RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13251
         (166 letters)



>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial,
           cytokine, developm protein, fungicide, glycoprotein,
           secreted; 2.40A {Drosophila melanogaster}
          Length = 114

 Score =  111 bits (278), Expect = 1e-32
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 66  SSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCL--STECNGV 123
             +    LC +  + V P+  +     W  +VN +E    YKQ ++ E C      C+  
Sbjct: 2   GGSDERFLCRSIRKLVYPKKGLRADDTWQLIVNNDE----YKQAIQIEECEGADQPCDFA 57

Query: 124 CGLPPGYTSRCEQKYVQKRLIALQGEGN-QLYTDVFWIPSCC 164
              P  Y   C+Q Y Q+ L +++ +G   +  + F IPSCC
Sbjct: 58  ANFPQSYNPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCC 99


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 1.2
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 24/132 (18%)

Query: 39  APPVSYYDPGYWWK---RYRRNADREKRQSSSTSTFT--------LCPTRSQFVMPQAAV 87
            PP   Y   Y++     + +N +  +R +     F         +    + +    + +
Sbjct: 465 IPP---YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 88  NNKGNW-MYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIAL 146
           N       Y   I + D +Y++LV + +    +            S+     ++   IAL
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-----ICSKY-TDLLR---IAL 572

Query: 147 QGEGNQLYTDVF 158
             E   ++ +  
Sbjct: 573 MAEDEAIFEEAH 584



 Score = 26.7 bits (58), Expect = 5.0
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 84  QAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGV--CGLPPGYTSRCEQ-KYVQ 140
           Q  ++ K  W+ + N N  +   + L K  +    + N             R    +   
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 141 KRLIALQGEGNQLYT--DVFWIPSC 163
           +RL+  +   N L    +V      
Sbjct: 235 RRLLKSKPYENCLLVLLNV-QNAKA 258


>1k32_A Tricorn protease; protein degradation, substrate gating, serine
           protease, beta propeller, proteasome, hydrolase; 2.00A
           {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
           b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
          Length = 1045

 Score = 28.2 bits (62), Expect = 1.7
 Identities = 9/65 (13%), Positives = 14/65 (21%), Gaps = 8/65 (12%)

Query: 12  PARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDPGYWWKRYRRNADREKRQSSSTSTF 71
                 L   T  +    R  +       P         WK YR     +     ++  F
Sbjct: 145 NFVPLNLGPATHILFADGRRVIGRNTFELP--------HWKGYRGGTRGKIWIEVNSGAF 196

Query: 72  TLCPT 76
                
Sbjct: 197 KKIVD 201


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 9.4
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 29 ARFELYPALTAPPVS 43
          A  +LY   +AP ++
Sbjct: 27 ASLKLYADDSAPALA 41


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.135    0.442 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,534,494
Number of extensions: 129153
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 10
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)