RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13251
(166 letters)
>d2o3ba1 d.4.1.2 (A:35-274) Nuclease NucA {Anabaena sp., PCC 7120
[TaxId: 1167]}
Length = 240
Score = 26.7 bits (58), Expect = 1.3
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 38 TAPPVSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVV 97
P Y GY +ADR K + +TF + MPQ NN+ W +
Sbjct: 75 RVTPSMYSGSGYARGHIAPSADRTKTTEDNAATFLMTNM-----MPQTPDNNRNTWGNLE 129
Query: 98 N 98
+
Sbjct: 130 D 130
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD)
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 119
Score = 25.8 bits (56), Expect = 1.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 92 NWMYVVNINEVDNRYKQLVKSEVCL 116
NW VVN ++V+ R ++ + ++ L
Sbjct: 93 NWWNVVNWDDVERRLQKALNGQIAL 117
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 113
Score = 24.6 bits (53), Expect = 4.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 92 NWMYVVNINEVDNRYKQLV 110
+ +VN EV+ R++ ++
Sbjct: 95 AFWNIVNWKEVEKRFEDIL 113
>d1coja2 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD)
{Aquifex pyrophilus [TaxId: 2714]}
Length = 122
Score = 24.6 bits (53), Expect = 5.0
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 92 NWMYVVNINEVDNRYKQLVKSEVCL 116
+ +N + V+ R+++ +K+ L
Sbjct: 93 AFFKNINWDVVNERFEKAMKAYEAL 117
>d1jpya_ g.17.1.6 (A:) Interleukin 17F, IL-17F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 121
Score = 24.4 bits (53), Expect = 5.7
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 19/70 (27%)
Query: 56 RNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVC 115
N ++ S + + + P W Y V + NRY V C
Sbjct: 25 INENQRVSMSRNIESRSTSP-----------------WNYTVTWDP--NRYPSEVVQAQC 65
Query: 116 LSTECNGVCG 125
+ C G
Sbjct: 66 RNLGCINAQG 75
>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 628
Score = 24.9 bits (54), Expect = 6.0
Identities = 11/87 (12%), Positives = 25/87 (28%)
Query: 30 RFELYPALTAPPVSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNN 89
+ P SYY + Y N RE + ++ + A
Sbjct: 405 TPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAATFLT 464
Query: 90 KGNWMYVVNINEVDNRYKQLVKSEVCL 116
+ + +N+ + +++ L
Sbjct: 465 CHSIAHGINLRKSPVLQYLYYLAQIGL 491
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 23.6 bits (51), Expect = 6.1
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 80 FVMPQAAVNNKGNW------MYVVNINEVDNRYKQLVKSE 113
P ++KGN+ + +I +V+ Y++L K +
Sbjct: 42 DYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKID 81
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III
(MagIII) {Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 24.7 bits (53), Expect = 6.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 30 RFELYPALTAPPVSYYDPGYWWK 52
FE+ AL + + P +WW
Sbjct: 3 SFEILKALKSLDLLKNAPAWWWP 25
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
halodurans [TaxId: 86665]}
Length = 537
Score = 24.8 bits (53), Expect = 7.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 5 DLQEFPYPARRFPLHYGTDAVA 26
D Q +PYP+RR ++ VA
Sbjct: 4 DPQSYPYPSRRNVVYAKNGMVA 25
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus
subtilis [TaxId: 1423]}
Length = 223
Score = 24.5 bits (53), Expect = 8.1
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 6/64 (9%)
Query: 104 NRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVF----W 159
N +++ + L E P + +Q LI NQ D W
Sbjct: 9 NHADEILNPQ--LWKEIEETLLKMPLHVKASDQASKVGSLIFDPVGTNQYIKDELVPKHW 66
Query: 160 IPSC 163
+
Sbjct: 67 KNNI 70
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 23.5 bits (50), Expect = 9.3
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 92 NWMYVVNINEVDNRYKQLVK 111
V+N V RY K
Sbjct: 96 AIWNVINWENVTERYMACKK 115
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD)
{Thermus thermophilus [TaxId: 274]}
Length = 111
Score = 23.4 bits (50), Expect = 9.5
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 92 NWMYVVNINEVDNRYKQ 108
V+N + + +K+
Sbjct: 94 AIWNVLNWDVAEEFFKK 110
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD)
{Bacillus halodenitrificans [TaxId: 1482]}
Length = 111
Score = 23.4 bits (50), Expect = 9.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 92 NWMYVVNINEVDNRYKQ 108
+ VVN +EV +Y Q
Sbjct: 93 AFWNVVNWDEVAAQYSQ 109
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 116
Score = 23.5 bits (50), Expect = 9.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 92 NWMYVVNINEVDNRYKQLVK 111
V+N E +NRY K
Sbjct: 97 GIWNVINWAEAENRYIAGDK 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.442
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 652,255
Number of extensions: 27678
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 21
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)