BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13252
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 160/453 (35%), Positives = 237/453 (52%), Gaps = 35/453 (7%)
Query: 23 SNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRY 82
S P PI + E R D F++EF L + H + + + EN+ KNRY
Sbjct: 2 SGPKKYFPIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHI-QGTFELANKEENREKNRY 60
Query: 83 PDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQ 142
P+I D +RV L+ +DG+P SDYINA+++ GYKE KFI AQGP + TVNDFWRM+WEQ
Sbjct: 61 PNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQ 120
Query: 143 HLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTA 202
++MLTNL+E + KC +YWP+Q G TYG+ V + + +Y +R+ +
Sbjct: 121 KSATIVMLTNLKERKEEKCHQYWPDQ--GCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQL 178
Query: 203 SGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVVQ 262
R + Q H+ +W DF P P G+LKF+K V + GPI+VHC A
Sbjct: 179 PDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSA------ 232
Query: 263 FGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNL 322
+ T ++ + + +K ++ EF ++++ Q+ I+Q L
Sbjct: 233 ----GVGRTGTFIVIDAMMAMMHAEQKVDV-FEFVSRIRNQRPQMVQTDMQYTFIYQALL 287
Query: 323 ---ASGPDQVYVLRLTQAKEENKSTTNAKSEDLTVLGV-----RLTQAK--EENKSTTNA 372
G ++ V L E++ T + + +G+ +LT + +EN T N
Sbjct: 288 EYYLYGDTELDVSSL----EKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNL 343
Query: 373 KSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYDNTESFIITQDPDMEH 430
+ N K R IIPYD NRVILS ++Y++YINASFI+ Y + FI TQ P + H
Sbjct: 344 PA--NMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGP-LAH 400
Query: 431 TVHDFWRMISEHTISTIIMLSDRLTQAKEENKS 463
TV DFWRMI E TI+ML++ Q +E++K
Sbjct: 401 TVEDFWRMIWEWKSHTIVMLTE--VQEREQDKC 431
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 109/216 (50%), Gaps = 6/216 (2%)
Query: 44 HYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPG 103
H+D G ++EF +L N + + N K R I YD RV L+ G
Sbjct: 315 HFDK-IGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEY 373
Query: 104 SDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAK 163
+DYINA+F+ GY++ FI QGP+ HTV DFWRMIWE ++MLT ++E + KC +
Sbjct: 374 TDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQ 433
Query: 164 YWPEQEEGDKTYGDFIVGLVNEKKFGEYILRE-LKLVRTASGKESEE-RSIFQYHYLAWK 221
YWP EG T+G+ + + N+ +R+ L + ++ E+ R + Q+H+ W
Sbjct: 434 YWP--TEGSVTHGEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHFHGWP 491
Query: 222 DFQAPENPSGLLKFIKHVN-EAYSLEKGPILVHCRA 256
+ P G++ I V + PI VHC A
Sbjct: 492 EIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSA 527
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 459 EENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYDNTESFI 516
+EN T N + N K R IIPYD NRVILS ++Y++YINASFI+ Y + FI
Sbjct: 335 KENMRTGNLPA--NMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFI 392
Query: 517 ITQDPDMEHTVHDFWRMISEHTISTIIMLSD 547
TQ P + HTV DFWRMI E TI+ML++
Sbjct: 393 ATQGP-LAHTVEDFWRMIWEWKSHTIVMLTE 422
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDME 524
A EEN++KNR +I+P D +RVILS S+YINAS+I+ Y FI Q P E
Sbjct: 49 ANKEENREKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQE 108
Query: 525 HTVHDFWRMISEHTISTIIMLSD 547
TV+DFWRM+ E +TI+ML++
Sbjct: 109 -TVNDFWRMVWEQKSATIVMLTN 130
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 232/449 (51%), Gaps = 48/449 (10%)
Query: 37 VMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA--SEARENQHKNRYPDIKAYDQTRVK 94
V E + ++ +GF ++FE+ V D + A S EN+HKNRY +I AYD +RVK
Sbjct: 9 VKHIGELYSNNQHGFSEDFEE-VQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVK 67
Query: 95 LTPVDGVPG--SDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTN 152
L P+ G SDYINAN+V GY + K +I QGP++ T DFWRMIWEQ+ I++M+TN
Sbjct: 68 LRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITN 127
Query: 153 LEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESE---- 208
L E + KC +YWP E + YG+ IV L + K Y +R + T K +
Sbjct: 128 LVEKGRRKCDQYWP--TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPK 185
Query: 209 ----ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVVQFG 264
ER + QYHY W D PE +L F++ + A E GP+LVHC A V G
Sbjct: 186 GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGV-----G 240
Query: 265 ETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLAS 324
T + S L+ +K +K + L F + ++L+++ Q+ IH
Sbjct: 241 RTGTYIV-IDSMLQQIK-----DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIH------ 288
Query: 325 GPDQVYVLRLTQAKEENKSTTNAKSEDLTVLGVR-----------LTQAKEENKSTTNAK 373
D + L + E + + ++ + + GV +TQ + +A+
Sbjct: 289 --DALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQ 346
Query: 374 SEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDMEHT 431
E NK+KNR+ S++P +R RV L+P ++YINAS+I Y + FIITQ P + HT
Sbjct: 347 KECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHP-LPHT 405
Query: 432 VHDFWRMISEHTISTIIMLSDRLTQAKEE 460
DFWRMI +H I+ML D + A++E
Sbjct: 406 TKDFWRMIWDHNAQIIVMLPDNQSLAEDE 434
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 454 LTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDN 511
+TQ + +A+ E NK+KNR+ S++P +R RV L+P ++YINAS+I Y
Sbjct: 332 VTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYR 391
Query: 512 TESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSD 547
+ FIITQ P + HT DFWRMI +H I+ML D
Sbjct: 392 SNEFIITQHP-LPHTTKDFWRMIWDHNAQIIVMLPD 426
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 516
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 38 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 97
Query: 517 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
TQ P ++ T DFWRMI E I+M+++ +E+ +
Sbjct: 98 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRR 134
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 225/421 (53%), Gaps = 35/421 (8%)
Query: 51 FQQEFEQL-VNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINA 109
F QE+E + + F + + S N+ KNRY ++ AYD +RV LT +DGVPGSDYINA
Sbjct: 20 FSQEYESIDPGQQF---TWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINA 76
Query: 110 NFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
N++ GY++ +I QGP+ T+ DFWRM+WEQ V+M+T LEE S++KC +YWP +
Sbjct: 77 NYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPAR- 135
Query: 170 EGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENP 229
G +T G V L++ + Y +R L ++ S SE+R + Q+ ++AW D PE P
Sbjct: 136 -GTETCGLIQVTLLDTVELATYTVRTFALHKSGS---SEKRELRQFQFMAWPDHGVPEYP 191
Query: 230 SGLLKFIKHVNEAYSLEKGPILVHCRALVEVVQFGETEIRATDLKSTLETLKRVNDGNKK 289
+ +L F++ V L+ GP++VHC A V G T + + LE +K K
Sbjct: 192 TPILAFLRRVKACNPLDAGPMVVHCSAGV-----GRTGCFIV-IDAMLERMKH----EKT 241
Query: 290 SELELEFEETHNKC----SDHLIRSACQFYLIHQVNL---ASGPDQVYVLRLTQAKEENK 342
++ H C ++++++ Q+ IH+ L G +V L ++
Sbjct: 242 VDI-----YGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLG 296
Query: 343 STTNAKSEDLTVLGVRLTQAKEENKST-TNAKSEENKDKNRDESIIPYDRNRVILSPAKD 401
+S L +L + + + S +A NK KNR +I+PY+ RV L P +
Sbjct: 297 QVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRG 356
Query: 402 Y--SNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKE 459
S+YINASF++ Y +++I TQ P E T DFWRM+ EH + I+ML+ +E
Sbjct: 357 VEGSDYINASFLDGYRQQKAYIATQGPLAEST-EDFWRMLWEHNSTIIVMLTKLREMGRE 415
Query: 460 E 460
+
Sbjct: 416 K 416
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 9/186 (4%)
Query: 76 NQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDF 135
N+ KNR +I Y+ TRV L P+ GV GSDYINA+F+ GY++ K +I QGP+ + DF
Sbjct: 332 NKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDF 391
Query: 136 WRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRE 195
WRM+WE + I++MLT L E + KC +YWP + Y F+V + E +YILRE
Sbjct: 392 WRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQY--FVVDPMAEYNMPQYILRE 449
Query: 196 LKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN---EAYSLEKGPILV 252
K+ ++ + R+I Q+ + W + P+ G + FI V+ E + + GPI V
Sbjct: 450 FKV---TDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFG-QDGPITV 505
Query: 253 HCRALV 258
HC A V
Sbjct: 506 HCSAGV 511
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 454 LTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDN 511
L +K +A NK KNR +I+PY+ RV L P + S+YINASF++ Y
Sbjct: 314 LASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQ 373
Query: 512 TESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+++I TQ P E T DFWRM+ EH + I+ML+
Sbjct: 374 QKAYIATQGPLAEST-EDFWRMLWEHNSTIIVMLT 407
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 466 NAKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDM 523
N+ E NK KNR ++I YD +RVIL+ S+YINA++I+ Y ++I TQ P +
Sbjct: 37 NSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGP-L 95
Query: 524 EHTVHDFWRMISEHTISTIIMLSDGLEETNKFR 556
T+ DFWRM+ E +T++M++ LEE ++ +
Sbjct: 96 PETMGDFWRMVWEQRTATVVMMTR-LEEKSRVK 127
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 230/445 (51%), Gaps = 41/445 (9%)
Query: 30 PITRADIVMEYDERHYDSD-YGFQQEFEQL-VNEHFPDRSTKASEARENQHKNRYPDIKA 87
PI AD+ E+ ER +D QE+E + + F + + S N+ KNRY ++ A
Sbjct: 11 PIPIADMA-EHTERLKANDSLKLSQEYESIDPGQQF---TWEHSNLEVNKPKNRYANVIA 66
Query: 88 YDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIV 147
YD +RV L P++G+ GSDYINAN+V GY+ +I QGP+ T DFWRM+WEQ +
Sbjct: 67 YDHSRVILQPIEGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSATI 126
Query: 148 IMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKES 207
+M+T LEE S+IKC +YWP + G +TYG V L++ + + +R L + S S
Sbjct: 127 VMMTRLEEKSRIKCDQYWPNR--GTETYGFIQVTLLDTIELATFCVRTFSLHKNGS---S 181
Query: 208 EERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVVQFGETE 267
E+R + Q+ + AW D PE P+ L F++ V + GPI+VHC A V G T
Sbjct: 182 EKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPIVVHCSAGV-----GRTG 236
Query: 268 IRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNL---AS 324
+ + LE +K + + L + ++++++ Q+ IH+ L
Sbjct: 237 CFIV-IDAMLERIKPEKTVDVYGHVTLMRSQ-----RNYMVQTEDQYSFIHEALLEAVGC 290
Query: 325 GPDQV-------YVLRLTQAKEENKSTTNAKSEDLTVLGVRLTQAKEENKSTTNAKSEEN 377
G +V Y+ +L Q E + T + E RL +K +A N
Sbjct: 291 GNTEVPARSLYAYIQKLAQV-EPGEHVTGMELEFK-----RLANSKAHTSRFISANLPCN 344
Query: 378 KDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDMEHTVHDF 435
K KNR +I+PY+ RV L P + S+YINASFI+ Y +++I TQ P + T DF
Sbjct: 345 KFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGP-LAETTEDF 403
Query: 436 WRMISEHTISTIIMLSDRLTQAKEE 460
WRM+ E+ + ++ML+ +E+
Sbjct: 404 WRMLWENNSTIVVMLTKLREMGREK 428
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 127/234 (54%), Gaps = 13/234 (5%)
Query: 50 GFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINA 109
G + EF++L N ++ N+ KNR +I Y+ TRV L P+ GV GSDYINA
Sbjct: 318 GMELEFKRLANSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINA 377
Query: 110 NFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
+F+ GY++ K +I QGP+ T DFWRM+WE + IV+MLT L E + KC +YWP +
Sbjct: 378 SFIDGYRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAER 437
Query: 170 EGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENP 229
Y F+V + E +YILRE K+ ++ + R++ Q+ + W + P++
Sbjct: 438 SARYQY--FVVDPMAEYNMPQYILREFKV---TDARDGQSRTVRQFQFTDWPEQGVPKSG 492
Query: 230 SGLLKFIKHVNEAYSL--EKGPILVHCRALVEVVQFGETEIRATDLKSTLETLK 281
G + FI V++ + GPI VHC A V G T + T L LE ++
Sbjct: 493 EGFIDFIGQVHKTKEQFGQDGPISVHCSAGV-----GRTGVFIT-LSIVLERMR 540
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 453 RLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYD 510
RL +K +A NK KNR +I+PY+ RV L P + S+YINASFI+ Y
Sbjct: 325 RLANSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYR 384
Query: 511 NTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+++I TQ P + T DFWRM+ E+ + ++ML+
Sbjct: 385 QQKAYIATQGP-LAETTEDFWRMLWENNSTIVVMLT 419
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 470 EENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDMEHTV 527
E NK KNR ++I YD +RVIL P + S+YINA++++ Y ++I TQ P + T
Sbjct: 53 EVNKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDGYRRQNAYIATQGP-LPETF 111
Query: 528 HDFWRMISEHTISTIIMLSDGLEETNKFR 556
DFWRM+ E +TI+M++ LEE ++ +
Sbjct: 112 GDFWRMVWEQRSATIVMMTR-LEEKSRIK 139
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 229/451 (50%), Gaps = 43/451 (9%)
Query: 23 SNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQL-VNEHFPDRSTKASEARENQHKNR 81
S+PP PIT D+ + + QE+E + + F + + S N+ KNR
Sbjct: 10 SHPP--IPIT--DMAEHMERLKANDSLKLSQEYESIDPGQQF---TWEHSNLEANKPKNR 62
Query: 82 YPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWE 141
Y ++ AYD +RV L P++G+ GSDYINAN+V GY+ +I QGP+ T DFWRM+WE
Sbjct: 63 YANVIAYDHSRVILQPLEGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWE 122
Query: 142 QHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRT 201
Q V+M+T LEE S+IKC +YWP + G +TYG V L++ + + +R L +
Sbjct: 123 QRSATVVMMTRLEEKSRIKCDQYWPNR--GTETYGFIQVTLLDTMELATFCVRTFSLHKN 180
Query: 202 ASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVV 261
S SE+R + + + AW D PE P+ L F++ V + GPI+VHC A V
Sbjct: 181 GS---SEKREVRHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPIVVHCSAGV--- 234
Query: 262 QFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVN 321
G T + + LE +K + + L + ++++++ Q+ IH+
Sbjct: 235 --GRTGCFIV-IDAMLERIKTEKTVDVYGHVTLMRSQ-----RNYMVQTEDQYGFIHEAL 286
Query: 322 L---ASGPDQV-------YVLRLTQAKEENKSTTNAKSEDLTVLGVRLTQAKEENKSTTN 371
L G +V Y+ +L Q E + T + E RL +K
Sbjct: 287 LEAVGCGNTEVPARSLYTYIQKLAQV-EPGEHVTGMELEF-----KRLASSKAHTSRFIT 340
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAK--DYSNYINASFIEAYDNTESFIITQDPDME 429
A NK KNR +I+PY+ +RV L P + + S+YINASFI+ Y +++I TQ P +
Sbjct: 341 ASLPCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGP-LA 399
Query: 430 HTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
T DFWR + E+ + ++ML+ +E+
Sbjct: 400 ETTEDFWRALWENNSTIVVMLTKLREMGREK 430
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 15/235 (6%)
Query: 50 GFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINA 109
G + EF++L + + N+ KNR +I Y+ +RV L P+ GV GSDYINA
Sbjct: 320 GMELEFKRLASSKAHTSRFITASLPCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYINA 379
Query: 110 NFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
+F+ GY++ K +I QGP+ T DFWR +WE + IV+MLT L E + KC +YWP +
Sbjct: 380 SFIDGYRQQKAYIATQGPLAETTEDFWRALWENNSTIVVMLTKLREMGREKCHQYWPAER 439
Query: 170 EGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENP 229
Y F+V + E +YILRE K+ ++ + R++ Q+ + W + AP++
Sbjct: 440 SARYQY--FVVDPMAEYNMPQYILREFKV---TDARDGQSRTVRQFQFTDWPEQGAPKSG 494
Query: 230 SGLLKFIKHVN---EAYSLEKGPILVHCRALVEVVQFGETEIRATDLKSTLETLK 281
G + FI V+ E + + GPI VHC A V G T + T L LE ++
Sbjct: 495 EGFIDFIGQVHKTKEQFG-QDGPISVHCSAGV-----GRTGVFIT-LSIVLERMR 542
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 470 EENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDMEHTV 527
E NK KNR ++I YD +RVIL P + S+YINA++++ Y ++I TQ P + T
Sbjct: 55 EANKPKNRYANVIAYDHSRVILQPLEGIMGSDYINANYVDGYRRQNAYIATQGP-LPETF 113
Query: 528 HDFWRMISEHTISTIIMLSDGLEETNKFR 556
DFWRM+ E +T++M++ LEE ++ +
Sbjct: 114 GDFWRMVWEQRSATVVMMTR-LEEKSRIK 141
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 453 RLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYD 510
RL +K A NK KNR +I+PY+ +RV L P + S+YINASFI+ Y
Sbjct: 327 RLASSKAHTSRFITASLPCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYINASFIDGYR 386
Query: 511 NTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+++I TQ P + T DFWR + E+ + ++ML+
Sbjct: 387 QQKAYIATQGP-LAETTEDFWRALWENNSTIVVMLT 421
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 229/456 (50%), Gaps = 51/456 (11%)
Query: 27 DMAPITRADIVME-YDERHYDSDYGFQQEFEQL--VNEHFPDRSTKASEARE--NQHKNR 81
++ PI ADI++E Y + D F EF+ + V FP + EAR+ NQ+KNR
Sbjct: 6 NVEPI-HADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIK-----EARKPFNQNKNR 59
Query: 82 YPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWE 141
Y DI YD RV+L+ ++G GS+YINA+++ G+KE +K+I AQGP + TV+DFWR IWE
Sbjct: 60 YVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRXIWE 119
Query: 142 QHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRT 201
Q +++ +T EE ++ KCA+YWP EEG + +GD +V + K+ +YI+++L +V
Sbjct: 120 QKATVIVXVTRCEEGNRNKCAEYWPSXEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNK 179
Query: 202 ASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVV 261
+++ R + + +W D PE+P LLK + VN + GPI+VH A V
Sbjct: 180 K--EKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGV--- 234
Query: 262 QFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVN 321
G T + + LE L+ NK + +C ++ Q+ LIHQ
Sbjct: 235 --GRTGT-YIGIDAXLEGLE---AENKVDVYGYVVKLRRQRCLX--VQVEAQYILIHQAL 286
Query: 322 L---ASGPDQVYVLRL-TQAKEENKSTTNAKSEDLTVLGVRLTQAKEENKSTTNAKSEEN 377
+ G +V + L K ++ L RL + ++ EEN
Sbjct: 287 VEYNQFGETEVNLSELHPYLHNXKKRDPPSEPSPLEAEFQRLPSYRSW-RTQHIGNQEEN 345
Query: 378 KDKNRDESIIPYDRNRVILSPAKDY---------------------SNYINASFIEAYDN 416
K KNR+ ++IPYD NRV L + S YINASFI +Y
Sbjct: 346 KSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASFIXSYWK 405
Query: 417 TESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSD 452
E I Q P ++ T+ DFW+ I + + I+ L++
Sbjct: 406 PEVXIAAQGP-LKETIGDFWQXIFQRKVKVIVXLTE 440
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 46/260 (17%)
Query: 66 RSTKASEARENQHKNRYPDIKAYDQTRVKL-------------------TPVDGVPGSDY 106
R+ EN+ KNR ++ YD RV L D S Y
Sbjct: 335 RTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKY 394
Query: 107 INANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWP 166
INA+F+ Y + + I AQGP++ T+ DFW+ I+++ +++++ LT L+ + CA+YW
Sbjct: 395 INASFIXSYWKPEVXIAAQGPLKETIGDFWQXIFQRKVKVIVXLTELKHGDQEICAQYW- 453
Query: 167 EQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAP 226
EG +TYGD V L + K Y LR +L + K + R+++QY Y W Q P
Sbjct: 454 --GEGKQTYGDIEVDLKDTDKSSTYTLRVFELRHS---KRKDSRTVYQYQYTNWSVEQLP 508
Query: 227 ENPSGLLKFIKHVNEAYSLEKG----------PILVHCR----------ALVEVVQFGET 266
P L+ I+ V + + P+L+HCR AL+ +++ ET
Sbjct: 509 AEPKELISXIQVVKQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLLESAET 568
Query: 267 EIRATDLKSTLETLKRVNDG 286
E D+ ++ L++ G
Sbjct: 569 E-EVVDIFQVVKALRKARLG 587
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYDNTESFIITQDPDME 524
A+ N++KNR I+PYD NRV LS SNYINAS+I+ + +I Q P E
Sbjct: 49 ARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDE 108
Query: 525 HTVHDFWRMISEHTISTIIMLSDGLEETNK 554
TV DFWR I E +T+I+ EE N+
Sbjct: 109 -TVDDFWRXIWEQK-ATVIVXVTRCEEGNR 136
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 22/102 (21%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDY---------------------SNYINASF 505
EENK KNR+ ++IPYD NRV L + S YINASF
Sbjct: 340 GNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASF 399
Query: 506 IEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSD 547
I +Y E I Q P ++ T+ DFW+ I + + I+ L++
Sbjct: 400 IXSYWKPEVXIAAQGP-LKETIGDFWQXIFQRKVKVIVXLTE 440
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 137/222 (61%), Gaps = 6/222 (2%)
Query: 39 EYDERHYDSDYGFQQEFEQLVNEHFPDRST-KASEARENQHKNRYPDIKAYDQTRVKLTP 97
E + R D + F++EF L P ++T +A+ EN+ KNRY +I YD +RV LTP
Sbjct: 19 EINRRMADDNKLFREEFNAL--PACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTP 76
Query: 98 VDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYS 157
V+GVP SDYINA+F+ GY+E KFI AQGP E TVNDFWRMIWEQ+ ++M+TNL+E
Sbjct: 77 VEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERK 136
Query: 158 KIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTAS-GKESEERSIFQYH 216
+ KCA+YWP+Q G TYG+ V + + +Y +R+ + + +R I Q+H
Sbjct: 137 ECKCAQYWPDQ--GCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFH 194
Query: 217 YLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV 258
+ +W DF P P G+LKF+K V G I+VHC A V
Sbjct: 195 FTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGV 236
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDME 429
A EENK+KNR +I+PYD +RV L+P + S+YINASFI Y FI Q P E
Sbjct: 50 ASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPK-E 108
Query: 430 HTVHDFWRMISEHTISTIIMLSD 452
TV+DFWRMI E +TI+M+++
Sbjct: 109 ETVNDFWRMIWEQNTATIVMVTN 131
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDME 524
A EENK+KNR +I+PYD +RV L+P + S+YINASFI Y FI Q P E
Sbjct: 50 ASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPK-E 108
Query: 525 HTVHDFWRMISEHTISTIIMLSD 547
TV+DFWRMI E +TI+M+++
Sbjct: 109 ETVNDFWRMIWEQNTATIVMVTN 131
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 12/231 (5%)
Query: 28 MAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQH--KNRYPDI 85
M I AD++ + YGF++E+E F +S A+++Q+ KNRY +I
Sbjct: 23 MPAIRVADLLQHINLMKTSDSYGFKEEYESF----FEGQSASWDVAKKDQNRAKNRYGNI 78
Query: 86 KAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLE 145
AYD +RV L PV+ P SDYINAN++ GY+ +I QGP+ TV DFWRMIW++
Sbjct: 79 IAYDHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIATQGPVHETVYDFWRMIWQEQSA 138
Query: 146 IVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGK 205
++M+TNL E ++KC KYWP+ E YGDF V V + EY++R L R
Sbjct: 139 CIVMVTNLVEVGRVKCYKYWPDDTE---VYGDFKVTCVEMEPLAEYVVRTFTLERRGY-- 193
Query: 206 ESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRA 256
+E R + Q+H+ W D P + +GLL FI+ V + GPI+VHC A
Sbjct: 194 -NEIREVKQFHFTGWPDHGVPYHATGLLSFIRRVKLSNPPSAGPIVVHCSA 243
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 460 ENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFII 517
++ S AK ++N+ KNR +II YD +RVIL P +D S+YINA++I+ Y +I
Sbjct: 57 QSASWDVAKKDQNRAKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIA 116
Query: 518 TQDPDMEHTVHDFWRMISEHTISTIIMLSDGLE 550
TQ P + TV+DFWRMI + + I+M+++ +E
Sbjct: 117 TQGP-VHETVYDFWRMIWQEQSACIVMVTNLVE 148
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Query: 365 ENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFII 422
++ S AK ++N+ KNR +II YD +RVIL P +D S+YINA++I+ Y +I
Sbjct: 57 QSASWDVAKKDQNRAKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIA 116
Query: 423 TQDPDMEHTVHDFWRMISEHTISTIIMLSD 452
TQ P + TV+DFWRMI + + I+M+++
Sbjct: 117 TQGP-VHETVYDFWRMIWQEQSACIVMVTN 145
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 135/246 (54%), Gaps = 15/246 (6%)
Query: 25 PPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA--SEARENQHKNRY 82
P DM I V E + ++ +GF ++FE+ V D + A S EN+HKNRY
Sbjct: 5 PDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEE-VQRCTADMNITAEHSNHPENKHKNRY 63
Query: 83 PDIKAYDQTRVKLTPVDGVPG--SDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIW 140
+I AYD +RVKL P+ G SDYINAN+V GY + K +I QGP++ T DFWRMIW
Sbjct: 64 INILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIW 123
Query: 141 EQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVR 200
EQ+ I++M+TNL E + KC +YWP E + YG+ IV L + K Y +R +
Sbjct: 124 EQNTGIIVMITNLVEKGRRKCDQYWP--TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 181
Query: 201 TASGKESE--------ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILV 252
T K + ER + QYHY W D PE +L F++ + A E GP+LV
Sbjct: 182 TKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLV 241
Query: 253 HCRALV 258
HC A V
Sbjct: 242 HCSAGV 247
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 516
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 46 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 105
Query: 517 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
TQ P ++ T DFWRMI E I+M+++ +E+ +
Sbjct: 106 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRR 142
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 421
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 46 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 105
Query: 422 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
TQ P ++ T DFWRMI E I+M+++ + + + +
Sbjct: 106 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRK 143
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 14/229 (6%)
Query: 31 ITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA---SEARENQHKNRYPDIKA 87
I AD++ + YGF++E+E L P+ T + ++ EN++KNRY +I +
Sbjct: 4 IRVADLLQHITQMKRGQGYGFKEEYEAL-----PEGQTASWDTAKEDENRNKNRYGNIIS 58
Query: 88 YDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIV 147
YD +RV+L +DG P SDYINAN++ GY + +I QGPM+ TV DFWRMIW+++ +
Sbjct: 59 YDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASI 118
Query: 148 IMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKES 207
+M+TNL E ++KC +YWP+ E YGD V L+ + EY++R + +
Sbjct: 119 VMVTNLVEVGRVKCVRYWPDDTE---VYGDIKVTLIETEPLAEYVIRTFTVQKKGY---H 172
Query: 208 EERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRA 256
E R + +H+ +W D P +GLL F++ V E GPI+VHC A
Sbjct: 173 EIRELRLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSA 221
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 460 ENKSTTNAKSEENKDKNRDESIIPYDRNRV--ILSPAKDYSNYINASFIEAYDNTESFII 517
+ S AK +EN++KNR +II YD +RV ++ +S+YINA++I+ Y +I
Sbjct: 35 QTASWDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIA 94
Query: 518 TQDPDMEHTVHDFWRMISEHTISTIIMLSDGLE 550
TQ P M+ TV DFWRMI + ++I+M+++ +E
Sbjct: 95 TQGP-MQETVKDFWRMIWQENSASIVMVTNLVE 126
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
Query: 365 ENKSTTNAKSEENKDKNRDESIIPYDRNRV--ILSPAKDYSNYINASFIEAYDNTESFII 422
+ S AK +EN++KNR +II YD +RV ++ +S+YINA++I+ Y +I
Sbjct: 35 QTASWDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIA 94
Query: 423 TQDPDMEHTVHDFWRMISEHTISTIIMLSD 452
TQ P M+ TV DFWRMI + ++I+M+++
Sbjct: 95 TQGP-MQETVKDFWRMIWQENSASIVMVTN 123
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 135/249 (54%), Gaps = 15/249 (6%)
Query: 22 ASNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA--SEARENQHK 79
S+ M I V E + ++ +GF ++FE+ V D + A S EN+HK
Sbjct: 1 GSHMGSMEAIPVKQFVKHIGELYSNNQHGFSEDFEE-VQRSTADMNITAEHSNHPENKHK 59
Query: 80 NRYPDIKAYDQTRVKLTPVDGVPG--SDYINANFVLGYKELKKFICAQGPMEHTVNDFWR 137
NRY +I AYD +RVKL P+ G SDYINAN+V GY + K +I QGP++ T DFWR
Sbjct: 60 NRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWR 119
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
MIWEQ+ I++M+TNL E + KC +YWP E + YG+ IV L + K Y +R
Sbjct: 120 MIWEQNTGIIVMITNLVEKGRRKCDQYWP--TENTEEYGNIIVTLKSTKIHACYTVRRFS 177
Query: 198 LVRTASGKESE--------ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGP 249
+ T K + ER + QYHY W D PE +L F++ + A E GP
Sbjct: 178 IRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGP 237
Query: 250 ILVHCRALV 258
+LVHC A V
Sbjct: 238 VLVHCSAGV 246
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 516
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 45 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 104
Query: 517 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
TQ P ++ T DFWRMI E I+M+++ +E+ +
Sbjct: 105 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRR 141
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 421
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 45 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 104
Query: 422 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
TQ P ++ T DFWRMI E I+M+++ + + + +
Sbjct: 105 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRK 142
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 135/249 (54%), Gaps = 15/249 (6%)
Query: 22 ASNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA--SEARENQHK 79
S+ M I V E + ++ +GF ++FE+ V D + A S EN+HK
Sbjct: 1 GSHMGSMEAIPVKQFVKHIGELYSNNQHGFSEDFEE-VQRCTADMNITAEHSNHPENKHK 59
Query: 80 NRYPDIKAYDQTRVKLTPVDGVPG--SDYINANFVLGYKELKKFICAQGPMEHTVNDFWR 137
NRY +I AYD +RVKL P+ G SDYINAN+V GY + K +I QGP++ T DFWR
Sbjct: 60 NRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWR 119
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
MIWEQ+ I+IM+TNL E + KC +YWP E + YG+ IV L + K Y +R
Sbjct: 120 MIWEQNTGIIIMITNLVEKGRRKCDQYWP--TENTEEYGNIIVTLKSTKIHACYTVRRFS 177
Query: 198 LVRTASGKESE--------ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGP 249
+ T K + ER + QYHY W D PE +L F++ + A E GP
Sbjct: 178 IRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGP 237
Query: 250 ILVHCRALV 258
+LVHC A V
Sbjct: 238 VLVHCSAGV 246
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 516
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 45 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 104
Query: 517 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
TQ P ++ T DFWRMI E IIM+++ +E+ +
Sbjct: 105 ATQGP-LKSTFEDFWRMIWEQNTGIIIMITNLVEKGRR 141
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 421
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 45 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 104
Query: 422 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
TQ P ++ T DFWRMI E IIM+++ + + + +
Sbjct: 105 ATQGP-LKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRK 142
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 135/249 (54%), Gaps = 15/249 (6%)
Query: 22 ASNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA--SEARENQHK 79
S+ M I V E + ++ +GF ++FE+ V D + A S EN+HK
Sbjct: 1 GSHMGSMEAIPVKQFVKHIGELYSNNQHGFSEDFEE-VQRCTADMNITAEHSNHPENKHK 59
Query: 80 NRYPDIKAYDQTRVKLTPVDGVPG--SDYINANFVLGYKELKKFICAQGPMEHTVNDFWR 137
NRY +I AYD +RVKL P+ G SDYINAN+V GY + K +I QGP++ T DFWR
Sbjct: 60 NRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWR 119
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
MIWEQ+ I++M+TNL E + KC +YWP E + YG+ IV L + K Y +R
Sbjct: 120 MIWEQNTGIIVMITNLVEKGRRKCDQYWP--TENSEEYGNIIVTLKSTKIHACYTVRRFS 177
Query: 198 LVRTASGKESE--------ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGP 249
+ T K + ER + QYHY W D PE +L F++ + A E GP
Sbjct: 178 IRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGP 237
Query: 250 ILVHCRALV 258
+LVHC A V
Sbjct: 238 VLVHCSAGV 246
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 516
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 45 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 104
Query: 517 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
TQ P ++ T DFWRMI E I+M+++ +E+ +
Sbjct: 105 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRR 141
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 421
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 45 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 104
Query: 422 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
TQ P ++ T DFWRMI E I+M+++ + + + +
Sbjct: 105 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRK 142
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 141/240 (58%), Gaps = 15/240 (6%)
Query: 21 VASNPPDMAPITRADIVMEYDERHYDSD-YGFQQEFEQL-VNEHFPDRSTKASEARENQH 78
+AS+PP PI + ++ ER +D F QE+E + + F + + S N+
Sbjct: 3 LASHPP--IPILE---LADHIERLKANDNLKFSQEYESIDPGQQF---TWEHSNLEVNKP 54
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRM 138
KNRY ++ AYD +RV L+ ++G+PGSDY+NAN++ GY++ +I QG + T DFWRM
Sbjct: 55 KNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRM 114
Query: 139 IWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKL 198
IWEQ V+M+T LEE S++KC +YWP + G +T+G V L++ + Y +R L
Sbjct: 115 IWEQRSATVVMMTKLEERSRVKCDQYWPSR--GTETHGLVQVTLLDTVELATYCVRTFAL 172
Query: 199 VRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV 258
+ S SE+R + Q+ + AW D PE+P+ L F++ V + GP++VHC A V
Sbjct: 173 YKNGS---SEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGV 229
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 470 EENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDMEHTV 527
E NK KNR ++I YD +RV+LS + S+Y+NA++I+ Y ++I TQ + T
Sbjct: 50 EVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQG-SLPETF 108
Query: 528 HDFWRMISEHTISTIIMLSDGLEETNKFR 556
DFWRMI E +T++M++ LEE ++ +
Sbjct: 109 GDFWRMIWEQRSATVVMMTK-LEERSRVK 136
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 375 EENKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDMEHTV 432
E NK KNR ++I YD +RV+LS + S+Y+NA++I+ Y ++I TQ + T
Sbjct: 50 EVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQG-SLPETF 108
Query: 433 HDFWRMISEHTISTIIMLS 451
DFWRMI E +T++M++
Sbjct: 109 GDFWRMIWEQRSATVVMMT 127
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 131/235 (55%), Gaps = 15/235 (6%)
Query: 36 IVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA--SEARENQHKNRYPDIKAYDQTRV 93
V E + ++ +GF ++FE+ V D + A S EN+HKNRY +I AYD +RV
Sbjct: 26 FVKHIGELYSNNQHGFSEDFEE-VQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRV 84
Query: 94 KLTPVDGVPG--SDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLT 151
KL P+ G SDYINAN+V GY + K +I QGP++ T DFWRMIWEQ+ I++M+T
Sbjct: 85 KLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMIT 144
Query: 152 NLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESE--- 208
NL E + KC +YWP E + YG+ IV L + K Y +R + T K +
Sbjct: 145 NLVEKGRRKCDQYWP--TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNP 202
Query: 209 -----ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV 258
ER + QYHY W D PE +L F++ + A E GP+LVHC A V
Sbjct: 203 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGV 257
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 516
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 56 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 115
Query: 517 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
TQ P ++ T DFWRMI E I+M+++ +E+ +
Sbjct: 116 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRR 152
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTESFI 421
N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ +++I
Sbjct: 56 NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYI 115
Query: 422 ITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
TQ P ++ T DFWRMI E I+M+++ + + + +
Sbjct: 116 ATQGP-LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRK 153
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 132/246 (53%), Gaps = 15/246 (6%)
Query: 25 PPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKA--SEARENQHKNRY 82
P D I V E + ++ +GF ++FE+ V D + A S EN+HKNRY
Sbjct: 5 PDDXEAIPVKQFVKHIGELYSNNQHGFSEDFEE-VQRCTADXNITAEHSNHPENKHKNRY 63
Query: 83 PDIKAYDQTRVKLTPVDGVPG--SDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIW 140
+I AYD +RVKL P+ G SDYINAN+V GY + K +I QGP++ T DFWR IW
Sbjct: 64 INILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRXIW 123
Query: 141 EQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVR 200
EQ+ I++ +TNL E + KC +YWP E + YG+ IV L + K Y +R +
Sbjct: 124 EQNTGIIVXITNLVEKGRRKCDQYWP--TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 181
Query: 201 TASGKESE--------ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILV 252
T K + ER + QYHY W D PE +L F++ + A E GP+LV
Sbjct: 182 TKVKKGQKGNPKGRQNERVVIQYHYTQWPDXGVPEYALPVLTFVRRSSAARXPETGPVLV 241
Query: 253 HCRALV 258
HC A V
Sbjct: 242 HCSAGV 247
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 459 EENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTES 514
+ N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ ++
Sbjct: 44 DXNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKA 103
Query: 515 FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
+I TQ P ++ T DFWR I E I+ +++ +E+ +
Sbjct: 104 YIATQGP-LKSTFEDFWRXIWEQNTGIIVXITNLVEKGRR 142
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 364 EENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKD--YSNYINASFIEAYDNTES 419
+ N + ++ ENK KNR +I+ YD +RV L P KD +S+YINA++++ Y+ ++
Sbjct: 44 DXNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKA 103
Query: 420 FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P ++ T DFWR I E I+ +++ + + + +
Sbjct: 104 YIATQGP-LKSTFEDFWRXIWEQNTGIIVXITNLVEKGRRK 143
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 12/228 (5%)
Query: 31 ITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEAR--ENQHKNRYPDIKAY 88
I AD++ + YGF++E+E F +S A+ EN+ KNRY +I AY
Sbjct: 2 IRVADLLQHITQMKCAEGYGFKEEYESF----FEGQSAPWDSAKKDENRMKNRYGNIIAY 57
Query: 89 DQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVI 148
D +RV+L ++G SDYIN N++ GY +I QGPM+ T+ DFWRM+W ++ +I
Sbjct: 58 DHSRVRLQTIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASII 117
Query: 149 MLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESE 208
M+TNL E ++KC KYWP+ E Y D V L+ + EY++R + + E
Sbjct: 118 MVTNLVEVGRVKCCKYWPDDTE---IYKDIKVTLIETELLAEYVIRTFAVEKRGV---HE 171
Query: 209 ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRA 256
R I Q+H+ W D P + +GLL F++ V GP++VHC A
Sbjct: 172 IREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSA 219
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 466 NAKSEENKDKNRDESIIPYDRNRVILSPAKDYSN--YINASFIEAYDNTESFIITQDPDM 523
+AK +EN+ KNR +II YD +RV L + +N YIN ++I+ Y +I TQ P M
Sbjct: 39 SAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTNSDYINGNYIDGYHRPNHYIATQGP-M 97
Query: 524 EHTVHDFWRMISEHTISTIIMLSDGLE 550
+ T++DFWRM+ ++IIM+++ +E
Sbjct: 98 QETIYDFWRMVWHENTASIIMVTNLVE 124
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 371 NAKSEENKDKNRDESIIPYDRNRVILSPAKDYSN--YINASFIEAYDNTESFIITQDPDM 428
+AK +EN+ KNR +II YD +RV L + +N YIN ++I+ Y +I TQ P M
Sbjct: 39 SAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTNSDYINGNYIDGYHRPNHYIATQGP-M 97
Query: 429 EHTVHDFWRMISEHTISTIIMLSD 452
+ T++DFWRM+ ++IIM+++
Sbjct: 98 QETIYDFWRMVWHENTASIIMVTN 121
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 9/230 (3%)
Query: 30 PITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFP-DRSTKASEARENQHKNRYPDIKAY 88
PI + Y DSD+ F +EFE+L +H D+ ++ N+ KNR+ +I Y
Sbjct: 25 PILIKNFAEHYRLMSADSDFRFSEEFEEL--KHVGRDQPCTFADLPCNRPKNRFTNILPY 82
Query: 89 DQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVI 148
D +R KL PVD GSDYINAN+V G+ ++FI QGP+ T +DFWRM WE + ++
Sbjct: 83 DHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIV 142
Query: 149 MLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESE 208
MLT E + KC +YWP + YGD V ++N+ + ++++ E L R SE
Sbjct: 143 MLTRCFEKGREKCDQYWP-NDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRG-----SE 196
Query: 209 ERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV 258
+R + +H+ W DF P P L++F++ + E+ PI+VHC A V
Sbjct: 197 QRILRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGV 246
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIIT 423
++ T A N+ KNR +I+PYD +R L P D S+YINA+++ +++ FI+T
Sbjct: 59 DQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVT 118
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
Q P + T DFWRM E I+ML+ + +E+
Sbjct: 119 QGP-LHSTRDDFWRMCWESNSRAIVMLTRCFEKGREK 154
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIIT 518
++ T A N+ KNR +I+PYD +R L P D S+YINA+++ +++ FI+T
Sbjct: 59 DQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVT 118
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q P + T DFWRM E I+ML+ E+
Sbjct: 119 QGP-LHSTRDDFWRMCWESNSRAIVMLTRCFEK 150
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 148/279 (53%), Gaps = 21/279 (7%)
Query: 46 DSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSD 105
DS+Y +E+E+L + ++S + EN+ KNRY +I YD TRVKL+ VD P SD
Sbjct: 38 DSNYLLSKEYEEL-KDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSD 96
Query: 106 YINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYW 165
YINA+++ G +++I QGP+ T +DFW+M+WEQ++ ++M+T E ++KC YW
Sbjct: 97 YINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYW 156
Query: 166 PEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKES--EERSIFQYHYLAWKDF 223
P ++ YGD I+ +++E E+ +RE K+ G+E R I +HY W D
Sbjct: 157 PADQDS-LYYGDLILQMLSESVLPEWTIREFKI----CGEEQLDAHRLIRHFHYTVWPDH 211
Query: 224 QAPENPSGLLKFIKHVNEAY--SLEKGPILVHCRALVEVVQFGETEIRATDLKSTLETLK 281
PE L++F++ V + S GP +VHC A V T I + L++
Sbjct: 212 GVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRT---GTFIALDRILQQLDSKD 268
Query: 282 RVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQV 320
V+ +L L H++++ CQ+ +HQ
Sbjct: 269 SVDIYGAVHDLRLH--------RVHMVQTECQYVYLHQC 299
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIIT 518
N+S A EN+ KNR +I+PYD RV LS D S+YINAS+I + +I+T
Sbjct: 56 NQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVT 115
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q P + T DFW+M+ E + I+M++ +E+
Sbjct: 116 QGP-LPGTKDDFWKMVWEQNVHNIVMVTQCVEK 147
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIIT 423
N+S A EN+ KNR +I+PYD RV LS D S+YINAS+I + +I+T
Sbjct: 56 NQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVT 115
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
Q P + T DFW+M+ E + I+M++ + + +
Sbjct: 116 QGP-LPGTKDDFWKMVWEQNVHNIVMVTQCVEKGR 149
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 148/279 (53%), Gaps = 21/279 (7%)
Query: 46 DSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSD 105
DS+Y +E+E+L + ++S + EN+ KNRY +I YD TRVKL+ VD P SD
Sbjct: 22 DSNYLLSKEYEEL-KDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSD 80
Query: 106 YINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYW 165
YINA+++ G +++I QGP+ T +DFW+M+WEQ++ ++M+T E ++KC YW
Sbjct: 81 YINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYW 140
Query: 166 PEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKES--EERSIFQYHYLAWKDF 223
P ++ YGD I+ +++E E+ +RE K+ G+E R I +HY W D
Sbjct: 141 PADQD-SLYYGDLILQMLSESVLPEWTIREFKI----CGEEQLDAHRLIRHFHYTVWPDH 195
Query: 224 QAPENPSGLLKFIKHVNEAY--SLEKGPILVHCRALVEVVQFGETEIRATDLKSTLETLK 281
PE L++F++ V + S GP +VHC A V T I + L++
Sbjct: 196 GVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTG---TFIALDRILQQLDSKD 252
Query: 282 RVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQV 320
V+ +L L H++++ CQ+ +HQ
Sbjct: 253 SVDIYGAVHDLRLH--------RVHMVQTECQYVYLHQC 283
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIIT 518
N+S A EN+ KNR +I+PYD RV LS D S+YINAS+I + +I+T
Sbjct: 40 NQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVT 99
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q P + T DFW+M+ E + I+M++ +E+
Sbjct: 100 QGP-LPGTKDDFWKMVWEQNVHNIVMVTQCVEK 131
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIIT 423
N+S A EN+ KNR +I+PYD RV LS D S+YINAS+I + +I+T
Sbjct: 40 NQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVT 99
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
Q P + T DFW+M+ E + I+M++ + + +
Sbjct: 100 QGP-LPGTKDDFWKMVWEQNVHNIVMVTQCVEKGR 133
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 126/221 (57%), Gaps = 15/221 (6%)
Query: 50 GFQQEFEQLVNEHFPDR-STKASEARENQHKNRYPDIKAYDQTRVKLTPVD-GVPGSDYI 107
GF +EFE L + S K + +EN++KNRY +I +D TRV L D P SDYI
Sbjct: 246 GFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYI 305
Query: 108 NANFVL--------GYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKI 159
NAN ++ K K +I QG +++TVNDFWRM+++++ +++M T E K
Sbjct: 306 NANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS 365
Query: 160 KCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLA 219
KC KYWP+ E K YG V V E +Y LRELKL + G + ER+++QYH+
Sbjct: 366 KCVKYWPD-EYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQG--NTERTVWQYHFRT 422
Query: 220 WKDFQAPENPSGLLKFIKHVNEAYS--LEKGPILVHCRALV 258
W D P +P G+L F++ V+ ++ GP++VHC A +
Sbjct: 423 WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGI 463
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 12/102 (11%)
Query: 368 STTNAKSEENKDKNRDESIIPYDRNRVIL---SPAKDYSNYINASFIEAYDNT------- 417
S + +ENK+KNR ++I+P+D RV+L P + S+YINA+ I T
Sbjct: 264 SRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKP 323
Query: 418 -ESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
+S+I TQ +++TV+DFWRM+ + I+M + + + K
Sbjct: 324 KKSYIATQGC-LQNTVNDFWRMVFQENSRVIVMTTKEVERGK 364
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 12/99 (12%)
Query: 463 STTNAKSEENKDKNRDESIIPYDRNRVIL---SPAKDYSNYINASFIEAYDNT------- 512
S + +ENK+KNR ++I+P+D RV+L P + S+YINA+ I T
Sbjct: 264 SRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKP 323
Query: 513 -ESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLE 550
+S+I TQ +++TV+DFWRM+ + I+M + +E
Sbjct: 324 KKSYIATQGC-LQNTVNDFWRMVFQENSRVIVMTTKEVE 361
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 126/221 (57%), Gaps = 15/221 (6%)
Query: 50 GFQQEFEQLVNEHFPDR-STKASEARENQHKNRYPDIKAYDQTRVKLTPVD-GVPGSDYI 107
GF +EFE L + S K + +EN++KNRY +I +D TRV L D P SDYI
Sbjct: 33 GFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYI 92
Query: 108 NANFVL--------GYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKI 159
NAN ++ K K +I QG +++TVNDFWRM+++++ +++M T E K
Sbjct: 93 NANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS 152
Query: 160 KCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLA 219
KC KYWP+ E K YG V V E +Y LRELKL + G + ER+++QYH+
Sbjct: 153 KCVKYWPD-EYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQG--NTERTVWQYHFRT 209
Query: 220 WKDFQAPENPSGLLKFIKHVNEAYS--LEKGPILVHCRALV 258
W D P +P G+L F++ V+ ++ GP++VHC A +
Sbjct: 210 WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGI 250
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 12/102 (11%)
Query: 368 STTNAKSEENKDKNRDESIIPYDRNRVIL---SPAKDYSNYINASFIEAYDNT------- 417
S + +ENK+KNR ++I+P+D RV+L P + S+YINA+ I T
Sbjct: 51 SRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKP 110
Query: 418 -ESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
+S+I TQ +++TV+DFWRM+ + I+M + + + K
Sbjct: 111 KKSYIATQGC-LQNTVNDFWRMVFQENSRVIVMTTKEVERGK 151
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 12/99 (12%)
Query: 463 STTNAKSEENKDKNRDESIIPYDRNRVIL---SPAKDYSNYINASFIEAYDNT------- 512
S + +ENK+KNR ++I+P+D RV+L P + S+YINA+ I T
Sbjct: 51 SRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKP 110
Query: 513 -ESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLE 550
+S+I TQ +++TV+DFWRM+ + I+M + +E
Sbjct: 111 KKSYIATQGC-LQNTVNDFWRMVFQENSRVIVMTTKEVE 148
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 118/203 (58%), Gaps = 14/203 (6%)
Query: 67 STKASEARENQHKNRYPDIKAYDQTRVKLTPVD-GVPGSDYINANFVL--------GYKE 117
S K + +EN++KNRY +I +D TRV L D P SDYINAN ++ K
Sbjct: 4 SRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKP 63
Query: 118 LKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD 177
K +I QG +++TVNDFWRM+++++ +++M T E K KC KYWP+ E K YG
Sbjct: 64 KKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPD-EYALKEYGV 122
Query: 178 FIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIK 237
V V E +Y LRELKL + G + ER+++QYH+ W D P +P G+L F++
Sbjct: 123 MRVRNVKESAAHDYTLRELKLSKVGQG--NTERTVWQYHFRTWPDHGVPSDPGGVLDFLE 180
Query: 238 HVNEAYS--LEKGPILVHCRALV 258
V+ ++ GP++VHC A +
Sbjct: 181 EVHHKQESIMDAGPVVVHCSAGI 203
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 12/102 (11%)
Query: 368 STTNAKSEENKDKNRDESIIPYDRNRVIL---SPAKDYSNYINASFIEAYDNT------- 417
S + +ENK+KNR ++I+P+D RV+L P + S+YINA+ I T
Sbjct: 4 SRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKP 63
Query: 418 -ESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
+S+I TQ +++TV+DFWRM+ + I+M + + + K
Sbjct: 64 KKSYIATQGC-LQNTVNDFWRMVFQENSRVIVMTTKEVERGK 104
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 12/99 (12%)
Query: 463 STTNAKSEENKDKNRDESIIPYDRNRVIL---SPAKDYSNYINASFIEAYDNT------- 512
S + +ENK+KNR ++I+P+D RV+L P + S+YINA+ I T
Sbjct: 4 SRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKP 63
Query: 513 -ESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLE 550
+S+I TQ +++TV+DFWRM+ + I+M + +E
Sbjct: 64 KKSYIATQGC-LQNTVNDFWRMVFQENSRVIVMTTKEVE 101
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 26/302 (8%)
Query: 23 SNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRY 82
SN PI + + DS+Y +E+E+L + ++S + EN+ KNRY
Sbjct: 1 SNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEEL-KDVGRNQSCDIALLPENRGKNRY 59
Query: 83 PDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQ 142
+I YD TRVKL+ GSDYINA+++ G +++I QGP+ T +DFW+M+WEQ
Sbjct: 60 NNILPYDATRVKLSG-----GSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQ 114
Query: 143 HLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTA 202
++ ++M+T E ++KC YWP ++ YGD I+ +++E E+ +RE K+
Sbjct: 115 NVHNIVMVTQCVEKGRVKCDHYWPADQD-SLYYGDLILQMLSESVLPEWTIREFKI---- 169
Query: 203 SGKES--EERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAY--SLEKGPILVHCRALV 258
G+E R I +HY W D PE L++F++ V + S GP +VHC A V
Sbjct: 170 CGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGV 229
Query: 259 EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIH 318
T I + L++ V+ +L L H++++ CQ+ +H
Sbjct: 230 GRT---GTFIALDRILQQLDSKDSVDIYGAVHDLRLH--------RVHMVQTECQYVYLH 278
Query: 319 QV 320
Q
Sbjct: 279 QC 280
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 461 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQD 520
N+S A EN+ KNR +I+PYD RV LS D YINAS+I + +I+TQ
Sbjct: 42 NQSCDIALLPENRGKNRYNNILPYDATRVKLSGGSD---YINASYIPGNNFRREYIVTQG 98
Query: 521 PDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
P + T DFW+M+ E + I+M++ +E+
Sbjct: 99 P-LPGTKDDFWKMVWEQNVHNIVMVTQCVEK 128
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQD 425
N+S A EN+ KNR +I+PYD RV LS D YINAS+I + +I+TQ
Sbjct: 42 NQSCDIALLPENRGKNRYNNILPYDATRVKLSGGSD---YINASYIPGNNFRREYIVTQG 98
Query: 426 PDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
P + T DFW+M+ E + I+M++ + + +
Sbjct: 99 P-LPGTKDDFWKMVWEQNVHNIVMVTQCVEKGR 130
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 15/224 (6%)
Query: 40 YDERHYDSDYGFQQEFE--QLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTP 97
+ ++ DS+ GF +E+E +L+ P A+E EN+ KNRY ++ YD +RVKL+
Sbjct: 35 FKKQQADSNCGFAEEYEDLKLIGISLPKY---AAEIAENRGKNRYNNVLPYDISRVKLS- 90
Query: 98 VDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYS 157
V DYINAN++ GY K FI QGP+ +T+ DFWRM+WE+++ ++MLT E
Sbjct: 91 VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQG 150
Query: 158 KIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHY 217
+ KC +YWP ++ D YGD V + +E E+ +R+ + S SE + Q+H+
Sbjct: 151 RTKCEEYWPSKQAQD--YGDITVAMTSEVVLPEWTIRDFVVKNMQS---SESHPLRQFHF 205
Query: 218 LAWKDFQAPENPSGLLKFIKHVNEAYSLE---KGPILVHCRALV 258
+W D P+ L+ F +++ Y + + PILVHC A V
Sbjct: 206 TSWPDHGVPDTTDLLINF-RYLVRDYMKQIPPESPILVHCSAGV 248
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 350 EDLTVLGVRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILS-PAKDYSNYINA 408
EDL ++G+ L + A+ EN+ KNR +++PYD +RV LS +YINA
Sbjct: 51 EDLKLIGISLPKYA--------AEIAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINA 102
Query: 409 SFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
+++ Y + + FI TQ P + +T+ DFWRM+ E + I+ML+ + Q +
Sbjct: 103 NYMPGYHSKKDFIATQGP-LPNTLKDFWRMVWEKNVYAIVMLTKCVEQGR 151
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS-PAKDYSNYINASFIEAYDNTESFIITQDPDMEH 525
A+ EN+ KNR +++PYD +RV LS +YINA+++ Y + + FI TQ P + +
Sbjct: 65 AEIAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINANYMPGYHSKKDFIATQGP-LPN 123
Query: 526 TVHDFWRMISEHTISTIIMLSDGLEE 551
T+ DFWRM+ E + I+ML+ +E+
Sbjct: 124 TLKDFWRMVWEKNVYAIVMLTKCVEQ 149
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 131/243 (53%), Gaps = 18/243 (7%)
Query: 31 ITRADI---VMEYDERHYDSD---YGFQQEFEQLVNEHFPDRSTKASEAR-ENQHKNRYP 83
+ ADI V+E +++ D GF +EFE L + + + R EN+ KNRY
Sbjct: 218 VNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYK 277
Query: 84 DIKAYDQTRVKLTPVDG-VPGSDYINANFV----LGYKE-LKKFICAQGPMEHTVNDFWR 137
+I +D +RV L D +PGSDYINAN++ LG E K +I +QG +E TVNDFW+
Sbjct: 278 NILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQ 337
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M W+++ +++M T E + KC YWPE + YG + V E EY LR L+
Sbjct: 338 MAWQENSRVIVMTTREVEKGRNKCVPYWPEVGM-QRAYGPYSVTNCGEHDTTEYKLRTLQ 396
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAY-SL-EKGPILVHCR 255
+ +G R I+ Y YL+W D P P G+L F+ +N+ SL GPI+VHC
Sbjct: 397 VSPLDNGDLI--REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCS 454
Query: 256 ALV 258
A +
Sbjct: 455 AGI 457
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 423
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 265 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 324
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
Q +E TV+DFW+M + I+M + + + +
Sbjct: 325 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEKGR 358
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 518
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 265 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 324
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q +E TV+DFW+M + I+M + +E+
Sbjct: 325 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEK 356
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 42 ERHYDSDYGFQQEFEQLVNEHFPDRSTKASEAR-ENQHKNRYPDIKAYDQTRVKLTPVDG 100
E Y GF +EFE L + + + R EN+ KNRY +I +D +RV L D
Sbjct: 15 ENLYFQGSGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDS 74
Query: 101 -VPGSDYINANFV----LGYKE-LKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLE 154
+PGSDYINAN++ LG E K +I +QG +E TVNDFW+M W+++ +++M T
Sbjct: 75 NIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREV 134
Query: 155 EYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQ 214
E + KC YWPE + YG + V E EY LR L++ +G R I+
Sbjct: 135 EKGRNKCVPYWPEVGM-QRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI--REIWH 191
Query: 215 YHYLAWKDFQAPENPSGLLKFIKHVNEAY-SL-EKGPILVHCRALV 258
Y YL+W D P P G+L F+ +N+ SL GPI+VHC A +
Sbjct: 192 YQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGI 237
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 423
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 45 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 104
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
Q +E TV+DFW+M + I+M + + + +
Sbjct: 105 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEKGR 138
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 518
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 45 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 104
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q +E TV+DFW+M + I+M + +E+
Sbjct: 105 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEK 136
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Query: 46 DSDYGFQQEFEQL--VNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPG 103
DSDY F +FE+L + P A++ N+ KNRY +I YD +RV+L ++ G
Sbjct: 29 DSDYKFSLQFEELKLIGLDIPHF---AADLPMNRCKNRYTNILPYDFSRVRLVSMNEEEG 85
Query: 104 SDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAK 163
SDYINAN++ GY +++I QGP+ T NDFW+M+ +Q +I++MLT E ++KC
Sbjct: 86 SDYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDH 145
Query: 164 YWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDF 223
YWP E+ YGD V +++E++ +++ R ++ E + + ++Y AW D
Sbjct: 146 YWPFTED-PIAYGDITVEMLSEEEHTDWVYRNFRI-----SYADEVQDVMHFNYTAWPDH 199
Query: 224 QAPENPSG--LLKFIKHVNEAYSLEKGPILVHCRALV 258
P + +L+F++ V + KGP+++HC A V
Sbjct: 200 GVPTANAAESILQFVQMVRQKSVKSKGPMIIHCSAGV 236
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 377 NKDKNRDESIIPYDRNRVILSPA--KDYSNYINASFIEAYDNTESFIITQDPDMEHTVHD 434
N+ KNR +I+PYD +RV L ++ S+YINA++I Y++ + +I TQ P + T +D
Sbjct: 58 NRCKNRYTNILPYDFSRVRLVSMNEEEGSDYINANYIPGYNSPQEYIATQGP-LPETRND 116
Query: 435 FWRMISEHTISTIIMLSDRLTQAKEENK 462
FW+M+ + I+M LTQ E+ +
Sbjct: 117 FWKMVLQQKSQIIVM----LTQCNEKRR 140
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 472 NKDKNRDESIIPYDRNRVILSPA--KDYSNYINASFIEAYDNTESFIITQDPDMEHTVHD 529
N+ KNR +I+PYD +RV L ++ S+YINA++I Y++ + +I TQ P + T +D
Sbjct: 58 NRCKNRYTNILPYDFSRVRLVSMNEEEGSDYINANYIPGYNSPQEYIATQGP-LPETRND 116
Query: 530 FWRMISEHTISTIIMLS 546
FW+M+ + I+ML+
Sbjct: 117 FWKMVLQQKSQIIVMLT 133
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 120/218 (55%), Gaps = 12/218 (5%)
Query: 50 GFQQEFEQLVNEHFPDRSTKASEAR-ENQHKNRYPDIKAYDQTRVKLTPVDG-VPGSDYI 107
GF +EFE L + + + R EN+ KNRY +I +D +RV L D +PGSDYI
Sbjct: 1 GFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 60
Query: 108 NANFV----LGYKE-LKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCA 162
NAN++ LG E K +I +QG +E TVNDFW+M W+++ +++M T E + KC
Sbjct: 61 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 120
Query: 163 KYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKD 222
YWPE + YG + V E EY LR L++ +G R I+ Y YL+W D
Sbjct: 121 PYWPEVGM-QRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI--REIWHYQYLSWPD 177
Query: 223 FQAPENPSGLLKFIKHVNEAY-SL-EKGPILVHCRALV 258
P P G+L F+ +N+ SL GPI+VHC A +
Sbjct: 178 HGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGI 215
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 423
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 23 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 82
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
Q +E TV+DFW+M + I+M + + + +
Sbjct: 83 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEKGR 116
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 518
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 23 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 82
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q +E TV+DFW+M + I+M + +E+
Sbjct: 83 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEK 114
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 9/233 (3%)
Query: 28 MAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKA 87
M P+ D + DSDY F +FE+L D A++ N+ KNRY +I
Sbjct: 2 MNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGL-DIPHFAADLPLNRCKNRYTNILP 60
Query: 88 YDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIV 147
YD +RV+L ++ G+DYINAN++ GY +++I QGP+ T NDFW+M+ +Q +I+
Sbjct: 61 YDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQII 120
Query: 148 IMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKES 207
+MLT E ++KC YWP EE YGD V +++E++ ++ R ++
Sbjct: 121 VMLTQCNEKRRVKCDHYWPFTEEP-IAYGDITVEMISEEEQDDWACRHFRI-----NYAD 174
Query: 208 EERSIFQYHYLAWKDFQAPENPSG--LLKFIKHVNEAYSLEKGPILVHCRALV 258
E + + ++Y AW D P + +L+F+ V + + KGP+++HC A V
Sbjct: 175 EMQDVMHFNYTAWPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGV 227
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 377 NKDKNRDESIIPYDRNRVILSPA--KDYSNYINASFIEAYDNTESFIITQDPDMEHTVHD 434
N+ KNR +I+PYD +RV L ++ ++YINA++I Y++ + +I TQ P + T +D
Sbjct: 49 NRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGP-LPETRND 107
Query: 435 FWRMISEHTISTIIMLSDRLTQAKEENK 462
FW+M+ + I+M LTQ E+ +
Sbjct: 108 FWKMVLQQKSQIIVM----LTQCNEKRR 131
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 472 NKDKNRDESIIPYDRNRVILSPA--KDYSNYINASFIEAYDNTESFIITQDPDMEHTVHD 529
N+ KNR +I+PYD +RV L ++ ++YINA++I Y++ + +I TQ P + T +D
Sbjct: 49 NRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGP-LPETRND 107
Query: 530 FWRMISEHTISTIIMLS 546
FW+M+ + I+ML+
Sbjct: 108 FWKMVLQQKSQIIVMLT 124
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 122/215 (56%), Gaps = 9/215 (4%)
Query: 46 DSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSD 105
DSDY F +FE+L D A++ N+ KNRY +I YD +RV+L ++ G+D
Sbjct: 22 DSDYKFSLQFEELKLIGL-DIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGAD 80
Query: 106 YINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYW 165
YINAN++ GY +++I QGP+ T NDFW+M+ +Q +I++MLT E ++KC YW
Sbjct: 81 YINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYW 140
Query: 166 PEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQA 225
P EE YGD V +++E++ ++ R ++ E + + ++Y AW D
Sbjct: 141 PFTEE-PIAYGDITVEMISEEEQDDWACRHFRI-----NYADEMQDVMHFNYTAWPDHGV 194
Query: 226 PENPSG--LLKFIKHVNEAYSLEKGPILVHCRALV 258
P + +L+F+ V + + KGP+++HC A V
Sbjct: 195 PTANAAESILQFVHMVRQQATKSKGPMIIHCSAGV 229
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 377 NKDKNRDESIIPYDRNRVILSPA--KDYSNYINASFIEAYDNTESFIITQDPDMEHTVHD 434
N+ KNR +I+PYD +RV L ++ ++YINA++I Y++ + +I TQ P + T +D
Sbjct: 51 NRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGP-LPETRND 109
Query: 435 FWRMISEHTISTIIMLSDRLTQAKEENK 462
FW+M+ + I+M LTQ E+ +
Sbjct: 110 FWKMVLQQKSQIIVM----LTQCNEKRR 133
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 472 NKDKNRDESIIPYDRNRVILSPA--KDYSNYINASFIEAYDNTESFIITQDPDMEHTVHD 529
N+ KNR +I+PYD +RV L ++ ++YINA++I Y++ + +I TQ P + T +D
Sbjct: 51 NRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGP-LPETRND 109
Query: 530 FWRMISEHTISTIIMLS 546
FW+M+ + I+ML+
Sbjct: 110 FWKMVLQQKSQIIVMLT 126
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 113/198 (57%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPSRVAKLPK---NKNRNRYCDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +TV FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 200 ESGSLSPEHGPVVVHCSA 217
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYCDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
V FW M+ E ++ML+ +E+ +
Sbjct: 92 VGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYCDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIML 450
V FW M+ E ++ML
Sbjct: 92 VGHFWEMVWEQKSRGVVML 110
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 19/250 (7%)
Query: 15 RRSHIPVASNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEH--FPDRSTKASE 72
R SH+ + M R + ME + D + ++ + +E FP R K +
Sbjct: 17 RGSHMASMTGGQQMG---RGSMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPK 73
Query: 73 ARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTV 132
N+++NRY D+ +D +R+KL D +DYINA+ + + + +I QGP+ +T
Sbjct: 74 ---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTC 126
Query: 133 NDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIVGLVNEKKFGE 190
FW M+WEQ V+ML + E +KCA+YWP++EE + + D + L++E
Sbjct: 127 GHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY 186
Query: 191 YILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL--EKG 248
Y +R+L+L + E R I +HY W DF PE+P+ L F+ V E+ SL E G
Sbjct: 187 YTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHG 243
Query: 249 PILVHCRALV 258
P++VHC A +
Sbjct: 244 PVVVHCSAGI 253
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 69 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 125
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 126 CGHFWEMVWEQKSRGVVMLNRVMEKGS 152
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 69 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 125
Query: 432 VHDFWRMISEHTISTIIML 450
FW M+ E ++ML
Sbjct: 126 CGHFWEMVWEQKSRGVVML 144
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 13/223 (5%)
Query: 40 YDERHYDSDYGFQQEFE--QLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTP 97
+ ++ DS+ GF +E+E +LV P A+E EN+ KNRY ++ YD +RVKL+
Sbjct: 35 FKKQQADSNCGFAEEYEDLKLVGISQPKY---AAELAENRGKNRYNNVLPYDISRVKLS- 90
Query: 98 VDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYS 157
V DYINAN++ GY K FI QGP+ +T+ DFWRM+WE+++ +IMLT E
Sbjct: 91 VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTKCVEQG 150
Query: 158 KIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHY 217
+ KC +YWP ++ D YGD V + +E E+ +R+ + + SE + Q+H+
Sbjct: 151 RTKCEEYWPSKQAQD--YGDITVAMTSEIVLPEWTIRDFTVKNIQT---SESHPLRQFHF 205
Query: 218 LAWKDFQAPENPSGLLKFIKHVNEAY--SLEKGPILVHCRALV 258
+W D P+ L+ F V + S + PILVH A V
Sbjct: 206 TSWPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHSSAGV 248
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 10/110 (9%)
Query: 350 EDLTVLGVRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILS-PAKDYSNYINA 408
EDL ++G+ +Q K A+ EN+ KNR +++PYD +RV LS +YINA
Sbjct: 51 EDLKLVGI--SQPKYA------AELAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINA 102
Query: 409 SFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
+++ Y + + FI TQ P + +T+ DFWRM+ E + IIML+ + Q +
Sbjct: 103 NYMPGYHSKKDFIATQGP-LPNTLKDFWRMVWEKNVYAIIMLTKCVEQGR 151
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS-PAKDYSNYINASFIEAYDNTESFIITQDPDMEH 525
A+ EN+ KNR +++PYD +RV LS +YINA+++ Y + + FI TQ P + +
Sbjct: 65 AELAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINANYMPGYHSKKDFIATQGP-LPN 123
Query: 526 TVHDFWRMISEHTISTIIMLSDGLEE 551
T+ DFWRM+ E + IIML+ +E+
Sbjct: 124 TLKDFWRMVWEKNVYAIIMLTKCVEQ 149
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 130/243 (53%), Gaps = 18/243 (7%)
Query: 31 ITRADI---VMEYDERHYDSD---YGFQQEFEQLVNEHFPDRSTKASEAR-ENQHKNRYP 83
+ ADI V+E +++ D GF +EFE L + + + R EN+ KNRY
Sbjct: 218 VNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYK 277
Query: 84 DIKAYDQTRVKLTPVDG-VPGSDYINANFV----LGYKE-LKKFICAQGPMEHTVNDFWR 137
+I +D +RV L D +PGSDYINAN++ LG E K +I +QG +E TVNDFW+
Sbjct: 278 NILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQ 337
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M W+++ +++M T E + KC YWPE + YG + V E EY LR L+
Sbjct: 338 MAWQENSRVIVMTTREVEKGRNKCVPYWPEVGM-QRAYGPYSVTNCGEHDTTEYKLRTLQ 396
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAY-SL-EKGPILVHCR 255
+ +G R I+ Y YL+W D P P G+L F+ +N+ SL GPI+VH
Sbjct: 397 VSPLDNGDLI--REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSS 454
Query: 256 ALV 258
A +
Sbjct: 455 AGI 457
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 376 ENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIITQDPD 427
ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +Q
Sbjct: 269 ENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGC- 327
Query: 428 MEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
+E TV+DFW+M + I+M + + + +
Sbjct: 328 LEATVNDFWQMAWQENSRVIVMTTREVEKGR 358
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 471 ENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIITQDPD 522
ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +Q
Sbjct: 269 ENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGC- 327
Query: 523 MEHTVHDFWRMISEHTISTIIMLSDGLEE 551
+E TV+DFW+M + I+M + +E+
Sbjct: 328 LEATVNDFWQMAWQENSRVIVMTTREVEK 356
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 42 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 94
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 95 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSVKCAQYWPQKEEKEMIFEDTNLKL 154
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 155 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 211
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 212 ESGSLSPEHGPVVVHCSAGI 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLNRVMEK 128
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLN 123
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 139/278 (50%), Gaps = 20/278 (7%)
Query: 50 GFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINA 109
G +E+E + E+ P + S + N KNRY D+ DQTRVKLT G +DYINA
Sbjct: 27 GIYEEYEDIRREN-PVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINA 85
Query: 110 NFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
+F+ GYK+ +I QGP+E+T DFW M+WEQ + +++M T EE + KC +YWP ++
Sbjct: 86 SFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEK 145
Query: 170 EGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENP 229
+ +G V + + Y L++ T +E ++R + + +L+W D+ P +
Sbjct: 146 DSRIRFGFLTVTNLGVENMNHYKKTTLEIHNT---EERQKRQVTHFQFLSWPDYGVPSSA 202
Query: 230 SGLLKFIKHVNEAYSL--------EKG-----PILVHCRALV-EVVQFGETEIRATDLK- 274
+ L+ F++ V SL KG PI+VHC A + F +I L+
Sbjct: 203 ASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEE 262
Query: 275 -STLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSA 311
TL + V+ + ++ E + C ++ A
Sbjct: 263 LGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFA 300
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 374 SEENKDKNRDESIIPYDRNRVILSPAKDYS--NYINASFIEAYDNTESFIITQDPDMEHT 431
S N +KNR + D+ RV L+ ++ +YINASF++ Y ++I TQ P +E+T
Sbjct: 49 SPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGP-LENT 107
Query: 432 VHDFWRMISEHTISTIIMLS 451
DFW M+ E + I+M +
Sbjct: 108 YRDFWLMVWEQKVLVIVMTT 127
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 469 SEENKDKNRDESIIPYDRNRVILSPAKDYS--NYINASFIEAYDNTESFIITQDPDMEHT 526
S N +KNR + D+ RV L+ ++ +YINASF++ Y ++I TQ P +E+T
Sbjct: 49 SPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGP-LENT 107
Query: 527 VHDFWRMISEHTISTIIMLS 546
DFW M+ E + I+M +
Sbjct: 108 YRDFWLMVWEQKVLVIVMTT 127
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 13/223 (5%)
Query: 40 YDERHYDSDYGFQQEFE--QLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTP 97
+ ++ DS+ GF +E+E +LV P A+E EN+ KNRY ++ YD +RVKL+
Sbjct: 35 FKKQQADSNCGFAEEYEDLKLVGISQPKY---AAELAENRGKNRYNNVLPYDISRVKLS- 90
Query: 98 VDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYS 157
V DYINAN++ GY K FI QGP+ +T+ DFWRM+WE+++ +IMLT E
Sbjct: 91 VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTKCVEQG 150
Query: 158 KIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHY 217
+ KC +YWP ++ D YGD V + +E E+ +R+ + + SE + Q+H+
Sbjct: 151 RTKCEEYWPSKQAQD--YGDITVAMTSEIVLPEWTIRDFTVKNIQT---SESHPLRQFHF 205
Query: 218 LAWKDFQAPENPSGLLKFIKHVNEAY--SLEKGPILVHCRALV 258
+ D P+ L+ F V + S + PILVHC A V
Sbjct: 206 TSAPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHCSAGV 248
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 10/110 (9%)
Query: 350 EDLTVLGVRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILS-PAKDYSNYINA 408
EDL ++G+ +Q K A+ EN+ KNR +++PYD +RV LS +YINA
Sbjct: 51 EDLKLVGI--SQPKYA------AELAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINA 102
Query: 409 SFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
+++ Y + + FI TQ P + +T+ DFWRM+ E + IIML+ + Q +
Sbjct: 103 NYMPGYHSKKDFIATQGP-LPNTLKDFWRMVWEKNVYAIIMLTKCVEQGR 151
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS-PAKDYSNYINASFIEAYDNTESFIITQDPDMEH 525
A+ EN+ KNR +++PYD +RV LS +YINA+++ Y + + FI TQ P + +
Sbjct: 65 AELAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINANYMPGYHSKKDFIATQGP-LPN 123
Query: 526 TVHDFWRMISEHTISTIIMLSDGLEE 551
T+ DFWRM+ E + IIML+ +E+
Sbjct: 124 TLKDFWRMVWEKNVYAIIMLTKCVEQ 149
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 200 ESGSLSPEHGPVVVHCSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 36 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 88
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 89 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 148
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 149 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 205
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 206 ESGSLSPEHGPVVVHCSAGI 225
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 98 CGHFWEMVWEQKSRGVVMLNRVMEK 122
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 98 CGHFWEMVWEQKSRGVVMLN 117
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 200 ESGSLSPEHGPVVVHCSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 42 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 94
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 95 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 154
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 155 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 211
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 212 ESGSLSPEHGPVVVHCSAGI 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLNRVMEK 128
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLN 123
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 200 ESGSLSPEHGPVVVHCSA 217
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 200 ESGSLSPEHGPVVVHCSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 200 ESGSLSPEHGPVVVHCSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 36 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 88
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 89 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 148
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 149 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 205
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 206 ESGSLSPEHGPVVVHCSAGI 225
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 98 CGHFWEMVWEQKSRGVVMLNRVMEKGS 124
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 98 CGHFWEMVWEQKSRGVVMLN 117
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 200 ESGSLSPEHGPVVVHCSAGI 219
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 29 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 81
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 82 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 141
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 142 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 198
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 199 ESGSLSPEHGPVVVHCSAGI 218
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 34 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 90
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 91 CGHFWEMVWEQKSRGVVMLNRVMEKGS 117
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 34 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 90
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 91 CGHFWEMVWEQKSRGVVMLN 110
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 32 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 84
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 85 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 144
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 145 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 201
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 202 ESGSLSPEHGPVVVHCSAGI 221
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 37 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 93
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 94 CGHFWEMVWEQKSRGVVMLNRVMEKGS 120
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 37 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 93
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 94 CGHFWEMVWEQKSRGVVMLN 113
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 200 ESGSLSPEHGPVVVHCSA 217
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 37 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 89
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 90 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 149
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 150 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 206
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 207 ESGSLSPEHGPVVVHCSA 224
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 42 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 98
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 99 CGHFWEMVWEQKSRGVVMLNRVMEK 123
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 42 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 98
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 99 CGHFWEMVWEQKSRGVVMLN 118
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 34 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 86
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 87 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 146
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 147 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 203
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 204 ESGSLSPEHGPVVVHCSA 221
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 39 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 95
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 96 CGHFWEMVWEQKSRGVVMLNRVMEKGS 122
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 39 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 95
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 96 CGHFWEMVWEQKSRGVVMLN 115
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 42 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 94
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 95 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 154
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 155 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 211
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 212 ESGSLSPEHGPVVVHCSA 229
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLNRVMEK 128
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLN 123
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKTYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 200 ESGSLSPEHGPVVVHCSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 12/218 (5%)
Query: 50 GFQQEFEQLVNEHFPDRSTKASEAR-ENQHKNRYPDIKAYDQTRVKLTPVDG-VPGSDYI 107
GF +EFE L + + + R EN+ KNRY +I +D +RV L D +PGSDYI
Sbjct: 3 GFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 62
Query: 108 NANFV----LGYKE-LKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCA 162
NAN++ LG E K +I +QG +E TVNDFW+M W+++ +++M T E + KC
Sbjct: 63 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 122
Query: 163 KYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKD 222
YWPE + YG + V E EY LR L++ +G R I+ Y YL+W D
Sbjct: 123 PYWPEVGM-QRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI--REIWHYQYLSWPD 179
Query: 223 FQAPENPSGLLKFIKHVNEAY-SL-EKGPILVHCRALV 258
P P G+L F+ +N+ SL GPI+VH A +
Sbjct: 180 HGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGI 217
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 423
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 25 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 84
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
Q +E TV+DFW+M + I+M + + + +
Sbjct: 85 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEKGR 118
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 518
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 25 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 84
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q +E TV+DFW+M + I+M + +E+
Sbjct: 85 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEK 116
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKTYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 200 ESGSLSPEHGPVVVHCSAGI 219
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 143/283 (50%), Gaps = 21/283 (7%)
Query: 31 ITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQ 90
I+ +++ Y E H + +E++ L + ++ N KNR+PD YD
Sbjct: 11 ISTGHMILAYMEDHLRNRDRLAKEWQALCAYQAEPNTCATAQGEGNIKKNRHPDFLPYDH 70
Query: 91 TRVKLTPVDGVPGSDYINANFVLGY-KELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIM 149
R+KL SDYINA+ ++ + + +I QGP+ HT+ DFW+M+WE +++M
Sbjct: 71 ARIKLKVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVM 130
Query: 150 LTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGE-YILRE--LKLVRTASGKE 206
LT L E +C +YWP +EG Y + V LV+E + E +++R LK V+T
Sbjct: 131 LTPLVEDGVKQCDRYWP--DEGASLYHVYEVNLVSEHIWCEDFLVRSFYLKNVQT----- 183
Query: 207 SEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCR---------AL 257
E R++ Q+H+L+W P + LL F + VN+ Y PI+VHC L
Sbjct: 184 QETRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYIL 243
Query: 258 VE-VVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEET 299
++ V+ ++ D+ +TLE ++ G +S+ + EF T
Sbjct: 244 IDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALT 286
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 454 LTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVIL----SPAKDYSNYINASFIEAY 509
L + E + A+ E N KNR +PYD R+ L SP++ S+YINAS I +
Sbjct: 38 LCAYQAEPNTCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSR--SDYINASPIIEH 95
Query: 510 D-NTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS----DGLEETNKF 555
D ++I TQ P + HT+ DFW+M+ E + I+ML+ DG+++ +++
Sbjct: 96 DPRMPAYIATQGP-LSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRY 145
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 359 LTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVIL----SPAKDYSNYINASFIEAY 414
L + E + A+ E N KNR +PYD R+ L SP++ S+YINAS I +
Sbjct: 38 LCAYQAEPNTCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSR--SDYINASPIIEH 95
Query: 415 D-NTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 451
D ++I TQ P + HT+ DFW+M+ E + I+ML+
Sbjct: 96 DPRMPAYIATQGP-LSHTIADFWQMVWESGCTVIVMLT 132
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 12/218 (5%)
Query: 50 GFQQEFEQLVNEHFPDRSTKASEAR-ENQHKNRYPDIKAYDQTRVKLTPVDG-VPGSDYI 107
GF +EFE L + + + R EN+ KNRY +I +D +RV L D +PGSDYI
Sbjct: 1 GFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 60
Query: 108 NANFV----LGYKE-LKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCA 162
NAN++ LG E K +I +QG +E TVNDFW+M W+++ +++M T E + KC
Sbjct: 61 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 120
Query: 163 KYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKD 222
YWPE + YG + V E EY LR L++ +G R I+ Y YL+W D
Sbjct: 121 PYWPEVGM-QRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI--REIWHYQYLSWPD 177
Query: 223 FQAPENPSGLLKFIKHVNEAY-SL-EKGPILVHCRALV 258
P P G+L F+ +N+ SL GPI+VH A +
Sbjct: 178 HGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGI 215
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 423
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 23 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 82
Query: 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
Q +E TV+DFW+M + I+M + + + +
Sbjct: 83 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEKGR 116
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILS------PAKDY--SNYINASFIEAYDNTESFIIT 518
+ ENK KNR ++I+P+D +RVIL P DY +NYI + +N +++I +
Sbjct: 23 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIAS 82
Query: 519 QDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551
Q +E TV+DFW+M + I+M + +E+
Sbjct: 83 QGC-LEATVNDFWQMAWQENSRVIVMTTREVEK 114
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 14/209 (6%)
Query: 54 EFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFV- 112
+F+QL + P + ++ +N KNRY DI YD TRV L DYINAN++
Sbjct: 50 QFDQLYRKK-PGMTMSCAKLPQNISKNRYRDISPYDATRVILKG-----NEDYINANYIN 103
Query: 113 ---LGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
+ ++I QGP+ HT DFW+M WEQ +V+MLT E ++KC +YWPE
Sbjct: 104 MEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPE-P 162
Query: 170 EGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENP 229
G +YG + V +E+ YI R++ L + +++E R + Q Y+AW D P++
Sbjct: 163 TGSSSYGCYQVTCHSEEGNTAYIFRKMTLF---NQEKNESRPLTQIQYIAWPDHGVPDDS 219
Query: 230 SGLLKFIKHVNEAYSLEKGPILVHCRALV 258
S L F+ HV + ++ P++VHC A +
Sbjct: 220 SDFLDFVCHVRNKRAGKEEPVVVHCSAGI 248
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 429 EHTVHDFWRMISEHTIS-TIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRN 487
+H++ + ++E I+ T++ D+L + K+ + + AK +N KNR I PYD
Sbjct: 28 DHSLRESMIQLAEGLITGTVLTQFDQLYR-KKPGMTMSCAKLPQNISKNRYRDISPYDAT 86
Query: 488 RVILSPAKDY--SNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIML 545
RVIL +DY +NYIN I + +I Q P + HT DFW+M E S ++ML
Sbjct: 87 RVILKGNEDYINANYINME-IPSSSIINQYIACQGP-LPHTCTDFWQMTWEQGSSMVVML 144
Query: 546 SDGLE 550
+ +E
Sbjct: 145 TTQVE 149
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 354 VLGVRLTQ-----AKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDY--SNYI 406
+ G LTQ K+ + + AK +N KNR I PYD RVIL +DY +NYI
Sbjct: 43 ITGTVLTQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVILKGNEDYINANYI 102
Query: 407 NASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAK 458
N I + +I Q P + HT DFW+M E S ++ML+ ++ + +
Sbjct: 103 NME-IPSSSIINQYIACQGP-LPHTCTDFWQMTWEQGSSMVVMLTTQVERGR 152
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY ++ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYVNVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKTYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 200 ESGSLSPEHGPVVVHCSA 217
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR ++ P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYVNVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR ++ P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYVNVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY ++ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYVNVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKTYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 200 ESGSLSPEHGPVVVHCSA 217
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR ++ P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYVNVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR ++ P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYVNVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 147/295 (49%), Gaps = 27/295 (9%)
Query: 20 PVASNPPDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHK 79
PV SN I+ +++ Y E H + ++E+E L S+ ++ EN K
Sbjct: 5 PVQSN----MDISTGHMILSYMEDHLKNKNRLEKEWEALCAYQAEPNSSFVAQREENVPK 60
Query: 80 NRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELK-KFICAQGPMEHTVNDFWRM 138
NR + YD +RV L + SDYINA+ ++ + +I QGP+ TV DFW+M
Sbjct: 61 NRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQGPLPATVADFWQM 120
Query: 139 IWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGE-YILRELK 197
+WE +++MLT L E +C YWP +EG Y + V LV+E + E +++R
Sbjct: 121 VWESGCVVIVMLTPLAENGVRQCYHYWP--DEGSNLYHIYEVNLVSEHIWCEDFLVRSFY 178
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCR-- 255
L + + +E R++ Q+H+L+W D P + LL F + VN+ Y PI+VHC
Sbjct: 179 L---KNLQTNETRTVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKCYRGRSCPIIVHCSDG 235
Query: 256 -------ALVEVV----QFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEET 299
L+++V G EI D+ +TLE L+ G +++ + EF T
Sbjct: 236 AGRSGTYVLIDMVLNKMAKGAKEI---DIAATLEHLRDQRPGMVQTKEQFEFALT 287
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 359 LTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYD- 415
L + E S+ A+ EEN KNR +++ YD +RV+L + +S+YINAS I +D
Sbjct: 39 LCAYQAEPNSSFVAQREENVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDP 98
Query: 416 NTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 451
++I TQ P + TV DFW+M+ E I+ML+
Sbjct: 99 RNPAYIATQGP-LPATVADFWQMVWESGCVVIVMLT 133
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 454 LTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYD- 510
L + E S+ A+ EEN KNR +++ YD +RV+L + +S+YINAS I +D
Sbjct: 39 LCAYQAEPNSSFVAQREENVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDP 98
Query: 511 NTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
++I TQ P + TV DFW+M+ E I+ML+
Sbjct: 99 RNPAYIATQGP-LPATVADFWQMVWESGCVVIVMLT 133
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY + DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTFPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VHC A
Sbjct: 200 ESGSLSPEHGPVVVHCSA 217
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 101/189 (53%), Gaps = 5/189 (2%)
Query: 68 TKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGP 127
T +E +N KNRY DI YD +RV+L+ + S YINANF+ G K +I QGP
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 128 MEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKK 187
+ T+ DFWRMIWE + I++M E K KC +YW E E +G F V EK+
Sbjct: 106 LSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKR 165
Query: 188 FGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK 247
+YI+R LK+ SE R+I+Q+HY W D P + +L+ I V +
Sbjct: 166 KSDYIIRTLKV-----KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDS 220
Query: 248 GPILVHCRA 256
PI +HC A
Sbjct: 221 VPICIHCSA 229
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 369 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 426
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 427 DMEHTVHDFWRMISEHTISTIIM 449
+ T+ DFWRMI E+++ I+M
Sbjct: 106 -LSTTLLDFWRMIWEYSVLIIVM 127
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 464 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 521
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 522 DMEHTVHDFWRMISEHTISTIIM 544
+ T+ DFWRMI E+++ I+M
Sbjct: 106 -LSTTLLDFWRMIWEYSVLIIVM 127
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 101/189 (53%), Gaps = 5/189 (2%)
Query: 68 TKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGP 127
T +E +N KNRY DI YD +RV+L+ + S YINANF+ G K +I QGP
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 128 MEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKK 187
+ T+ DFWRMIWE + I++M E K KC +YW E E +G F V EK+
Sbjct: 106 LSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKR 165
Query: 188 FGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK 247
+YI+R LK+ SE R+I+Q+HY W D P + +L+ I V +
Sbjct: 166 KSDYIIRTLKV-----KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDS 220
Query: 248 GPILVHCRA 256
PI +HC A
Sbjct: 221 VPICIHCSA 229
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 369 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 426
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 427 DMEHTVHDFWRMISEHTISTIIM 449
+ T+ DFWRMI E+++ I+M
Sbjct: 106 -LSTTLLDFWRMIWEYSVLIIVM 127
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 464 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 521
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 522 DMEHTVHDFWRMISEHTISTIIM 544
+ T+ DFWRMI E+++ I+M
Sbjct: 106 -LSTTLLDFWRMIWEYSVLIIVM 127
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 200 ESGSLSPEHGPVVVHASAGI 219
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 200 ESGSLSPEHGPVVVHSSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 200 ESGSLSPEHGPVVVHSSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 14/198 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRA 256
E+ SL E GP++VH A
Sbjct: 200 ESGSLSPEHGPVVVHAAA 217
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 101/189 (53%), Gaps = 5/189 (2%)
Query: 68 TKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGP 127
T +E +N KNRY DI YD +RV+L+ + S YINANF+ G K +I QGP
Sbjct: 65 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 124
Query: 128 MEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKK 187
+ T+ DFWRMIWE + I++M E K KC +YW E E +G F V EK+
Sbjct: 125 LSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKR 184
Query: 188 FGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK 247
+YI+R LK+ SE R+I+Q+HY W D P + +L+ I V +
Sbjct: 185 KSDYIIRTLKV-----KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDS 239
Query: 248 GPILVHCRA 256
PI +HC A
Sbjct: 240 VPICIHCSA 248
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 369 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 426
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 65 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 124
Query: 427 DMEHTVHDFWRMISEHTISTIIM 449
+ T+ DFWRMI E+++ I+M
Sbjct: 125 -LSTTLLDFWRMIWEYSVLIIVM 146
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 464 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 521
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 65 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 124
Query: 522 DMEHTVHDFWRMISEHTISTIIM 544
+ T+ DFWRMI E+++ I+M
Sbjct: 125 -LSTTLLDFWRMIWEYSVLIIVM 146
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 42 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 94
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 95 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 154
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 155 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 211
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 212 ESGSLSPEHGPVVVHSSAGI 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLNRVMEK 128
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLN 123
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 200 ESGSLSPEHGPVVVHXSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 36 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 88
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 89 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 148
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 149 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 205
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 206 ESGSLSPEHGPVVVHXSAGI 225
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 98 CGHFWEMVWEQKSRGVVMLNRVMEK 122
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 98 CGHFWEMVWEQKSRGVVMLN 117
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKTYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 200 ESGSLSPEHGPVVVHSSAGI 219
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKTYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 200 ESGSLSPEHGPVVVHSSAGI 219
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEK 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 30 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 82
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 83 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 142
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 143 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 199
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VH A +
Sbjct: 200 ESGSLSPEHGPVVVHXSAGI 219
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 92 CGHFWEMVWEQKSRGVVMLNRVMEKGS 118
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 35 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 91
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 92 CGHFWEMVWEQKSRGVVMLN 111
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 36 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 88
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +K A+YWP++EE + + D +
Sbjct: 89 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKEEKEMIFEDTNLKL 148
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 149 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 205
Query: 241 EAYSL--EKGPILVHCRALV 258
E+ SL E GP++VHC A +
Sbjct: 206 ESGSLSPEHGPVVVHCSAGI 225
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 527 VHDFWRMISEHTISTIIMLSDGLEETN 553
FW M+ E ++ML+ +E+ +
Sbjct: 98 CGHFWEMVWEQKSRGVVMLNRVMEKGS 124
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 41 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 97
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 98 CGHFWEMVWEQKSRGVVMLN 117
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 63 FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFI 122
FP R K + N+++NRY D+ +D +R+KL D +DYINA+ + + + +I
Sbjct: 42 FPCRVAKLPK---NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYI 94
Query: 123 CAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGD--FIV 180
QGP+ +T FW M+WEQ V+ML + E +KCA+YWP++EE + + D +
Sbjct: 95 LTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKL 154
Query: 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240
L++E Y +R+L+L + E R I +HY W DF PE+P+ L F+ V
Sbjct: 155 TLISEDIKSYYTVRQLELENLTT---QETREILHFHYTTWPDFGVPESPASFLNFLFKVR 211
Query: 241 EAYSL--EKGPILVH 253
E+ SL E GP++VH
Sbjct: 212 ESGSLSPEHGPVVVH 226
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ E ++ML+ +E+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLNRVMEK 128
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK +NK++NR + P+D +R+ L ++ ++YINAS I+ + S+I+TQ P + +T
Sbjct: 47 AKLPKNKNRNRYRDVSPFDHSRIKLH--QEDNDYINASLIKMEEAQRSYILTQGP-LPNT 103
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ E ++ML+
Sbjct: 104 CGHFWEMVWEQKSRGVVMLN 123
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 104/191 (54%), Gaps = 7/191 (3%)
Query: 67 STKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQG 126
ST A EN KNRY D+ YDQTRV L+ + SDYIN NF+ G +I QG
Sbjct: 51 STVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQG 110
Query: 127 PMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEK 186
P+ HT+ DFWR++WE +++++M E + +C +YW +++E +T G F + L+ EK
Sbjct: 111 PLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQT-GLFCITLIKEK 169
Query: 187 KFGEYI-LRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL 245
E I LR LK+ + E RS++Q Y++W D P +P +L ++
Sbjct: 170 WLNEDIMLRTLKVT-----FQKESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQGS 224
Query: 246 EKGPILVHCRA 256
P+ VHC A
Sbjct: 225 GPEPLCVHCSA 235
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 463 STTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIITQD 520
ST EN KNR + ++PYD+ RVILS ++ +S+YIN +FI D + ++I TQ
Sbjct: 51 STVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQG 110
Query: 521 PDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
P + HT+ DFWR++ E + I+M +E K
Sbjct: 111 P-LPHTLLDFWRLVWEFGVKVILMACREIENGRK 143
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 368 STTNAKSEENKDKNRDESIIPYDRNRVILSPAKD--YSNYINASFIEAYDNTESFIITQD 425
ST EN KNR + ++PYD+ RVILS ++ +S+YIN +FI D + ++I TQ
Sbjct: 51 STVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQG 110
Query: 426 PDMEHTVHDFWRMISEHTISTIIM 449
P + HT+ DFWR++ E + I+M
Sbjct: 111 P-LPHTLLDFWRLVWEFGVKVILM 133
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 121/219 (55%), Gaps = 17/219 (7%)
Query: 46 DSDYGFQQEFEQLVNEH--FPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPG 103
D+ +Q + ++ NE +P R K E N+++NRY D+ YD +RVKL +
Sbjct: 13 DTQRRWQPLYLEIRNESHDYPHRVAKFPE---NRNRNRYRDVSPYDHSRVKLQNAE---- 65
Query: 104 SDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAK 163
+DYINA+ V + + +I QGP+ +T FW M+W+Q + V+ML + E +KCA+
Sbjct: 66 NDYINASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQ 125
Query: 164 YWP--EQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWK 221
YWP +QE K G F V L++E Y + L+L SG E R+I +HY W
Sbjct: 126 YWPTDDQEMLFKETG-FSVKLLSEDVKSYYTVHLLQLENINSG---ETRTISHFHYTTWP 181
Query: 222 DFQAPENPSGLLKFIKHVNEAYSL--EKGPILVHCRALV 258
DF PE+P+ L F+ V E+ SL + GP ++HC A +
Sbjct: 182 DFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGI 220
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 526
AK EN+++NR + PYD +RV L A++ +YINAS ++ + S+I+TQ P + +T
Sbjct: 37 AKFPENRNRNRYRDVSPYDHSRVKLQNAEN--DYINASLVDIEEAQRSYILTQGP-LPNT 93
Query: 527 VHDFWRMISEHTISTIIMLSDGLEE 551
FW M+ + ++ML+ +E+
Sbjct: 94 CCHFWLMVWQQKTKAVVMLNRIVEK 118
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHT 431
AK EN+++NR + PYD +RV L A++ +YINAS ++ + S+I+TQ P + +T
Sbjct: 37 AKFPENRNRNRYRDVSPYDHSRVKLQNAEN--DYINASLVDIEEAQRSYILTQGP-LPNT 93
Query: 432 VHDFWRMISEHTISTIIMLS 451
FW M+ + ++ML+
Sbjct: 94 CCHFWLMVWQQKTKAVVMLN 113
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 76 NQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDF 135
N KNR I Y+ RV + G +DY+NA+F+ GY++ +I +QGP+ HT+ DF
Sbjct: 9 NMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDF 68
Query: 136 WRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRE 195
WRMIWE ++MLT LEE + KCA+YWP +G +YGD V L E++ Y +R+
Sbjct: 69 WRMIWEWKSCSIVMLTELEERGQEKCAQYWP--SDGLVSYGDITVELKKEEECESYTVRD 126
Query: 196 LKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKG-PILVHC 254
L + T +E++ R I Q+H+ W + P + G++ I V + PI VHC
Sbjct: 127 LLVTNT---RENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSGNHPITVHC 183
Query: 255 RA 256
A
Sbjct: 184 SA 185
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 472 NKDKNRDESIIPYDRNRVILSPAK---DYSNYINASFIEAYDNTESFIITQDPDMEHTVH 528
N KNR IIPY+ NRVI+ P K + ++Y+NASFI+ Y +S+I +Q P + HT+
Sbjct: 9 NMKKNRVLQIIPYEFNRVII-PVKRGEENTDYVNASFIDGYRQKDSYIASQGP-LLHTIE 66
Query: 529 DFWRMISEHTISTIIMLSDGLEETNK 554
DFWRMI E +I+ML++ LEE +
Sbjct: 67 DFWRMIWEWKSCSIVMLTE-LEERGQ 91
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAK---DYSNYINASFIEAYDNTESFIITQDPDMEHTVH 433
N KNR IIPY+ NRVI+ P K + ++Y+NASFI+ Y +S+I +Q P + HT+
Sbjct: 9 NMKKNRVLQIIPYEFNRVII-PVKRGEENTDYVNASFIDGYRQKDSYIASQGP-LLHTIE 66
Query: 434 DFWRMISEHTISTIIMLSDRLTQAKEE 460
DFWRMI E +I+ML++ + +E+
Sbjct: 67 DFWRMIWEWKSCSIVMLTELEERGQEK 93
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Query: 68 TKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGP 127
T +E +N KNRY DI YD +RV+L+ + S YINANF+ G K +I QGP
Sbjct: 65 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 124
Query: 128 MEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKK 187
+ T+ DFWRMIWE + I++M E K KC +YW E E +G F V EK+
Sbjct: 125 LSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKR 184
Query: 188 FGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK 247
+YI+R LK+ SE R+I+Q+HY W D P + +L+ I V +
Sbjct: 185 KSDYIIRTLKV-----KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDS 239
Query: 248 GPILVHCRA 256
PI +H A
Sbjct: 240 VPICIHSSA 248
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 369 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 426
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 65 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 124
Query: 427 DMEHTVHDFWRMISEHTISTIIM 449
+ T+ DFWRMI E+++ I+M
Sbjct: 125 -LSTTLLDFWRMIWEYSVLIIVM 146
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 464 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 521
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 65 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 124
Query: 522 DMEHTVHDFWRMISEHTISTIIM 544
+ T+ DFWRMI E+++ I+M
Sbjct: 125 -LSTTLLDFWRMIWEYSVLIIVM 146
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY I Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 71 KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 130
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 131 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 186
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E RS+ + AW D Q PE+ LL+ + V E+ + GPI+VHC
Sbjct: 187 IQ-----YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCS 241
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 242 AGIGRTGCFIATRIGCQQLKARGEV 266
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 367 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 418
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 419 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P M +TV DFW M+ + +S I+ML+ +L + KE+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT-QLREGKEK 152
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 462 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 513
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 514 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P M +TV DFW M+ + +S I+ML+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT 144
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY I Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 60 KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 119
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 120 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 175
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E RS+ + AW D Q PE+ LL+ + V E+ + GPI+VHC
Sbjct: 176 I-----QYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCS 230
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 231 AGIGRTGCFIATRIGCQQLKARGEV 255
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 367 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 418
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 41 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 100
Query: 419 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P M +TV DFW M+ + +S I+ML+ +L + KE+
Sbjct: 101 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT-QLREGKEK 141
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 462 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 513
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 41 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 100
Query: 514 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P M +TV DFW M+ + +S I+ML+
Sbjct: 101 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT 133
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY I Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 70 KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 129
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 130 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 185
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E RS+ + AW D Q PE+ LL+ + V E+ + GPI+VHC
Sbjct: 186 IQ-----YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCS 240
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 241 AGIGRTGCFIATRIGCQQLKARGEV 265
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 367 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 418
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 51 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 110
Query: 419 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P M +TV DFW M+ + +S I+ML+ +L + KE+
Sbjct: 111 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT-QLREGKEK 151
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 462 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 513
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 51 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 110
Query: 514 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P M +TV DFW M+ + +S I+ML+
Sbjct: 111 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT 143
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY DI Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 70 KDRYKDILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 129
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 130 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 185
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E RS+ + AW D Q PE+ LL+ + V E+ + GPI+VH
Sbjct: 186 IQ-----YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSS 240
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 241 AGIGRTGCFIATRIGCQQLKARGEV 265
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 11/103 (10%)
Query: 367 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 418
K +N S E+ D K+R + I+P ++RV L A+ +YINA++I YD E
Sbjct: 51 KIPSNFVSPEDLDIPGHASKDRYKDILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 110
Query: 419 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P M +TV DFW M+ + +S I+ML+ +L + KE+
Sbjct: 111 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT-QLREGKEK 151
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 462 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 513
K +N S E+ D K+R + I+P ++RV L A+ +YINA++I YD E
Sbjct: 51 KIPSNFVSPEDLDIPGHASKDRYKDILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 110
Query: 514 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P M +TV DFW M+ + +S I+ML+
Sbjct: 111 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT 143
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY I Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 71 KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 130
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 131 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 186
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E R + + AW D Q PE+ LL+ + V E+ + GPI+VHC
Sbjct: 187 IQ-----YQEERRDVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCS 241
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 242 AGIGRTGCFIATRIGCQQLKARGEV 266
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 367 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 418
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 419 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P M +TV DFW M+ + +S I+ML+ +L + KE+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT-QLREGKEK 152
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 462 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 513
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 514 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P M +TV DFW M+ + +S I+ML+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT 144
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 99/189 (52%), Gaps = 5/189 (2%)
Query: 68 TKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGP 127
T +E +N KNRY DI YD +RV+L+ + S YINANF+ G K +I QGP
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 128 MEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKK 187
+ T+ DFWRMIWE + I++M E K KC +YW E E +G F V EK+
Sbjct: 106 LSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKR 165
Query: 188 FGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK 247
+YI+R LK+ SE R+I+Q+HY W P + +L+ I V +
Sbjct: 166 KSDYIIRTLKV-----KFNSETRTIYQFHYKNWPAHDVPSSIDPILELIWDVRCYQEDDS 220
Query: 248 GPILVHCRA 256
PI +H A
Sbjct: 221 VPICIHSSA 229
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 369 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 426
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 427 DMEHTVHDFWRMISEHTISTIIM 449
+ T+ DFWRMI E+++ I+M
Sbjct: 106 -LSTTLLDFWRMIWEYSVLIIVM 127
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 464 TTNAKSEENKDKNRDESIIPYDRNRVILS--PAKDYSNYINASFIEAYDNTESFIITQDP 521
TT A+ +N KNR + I+PYD +RV LS + + S+YINA+FI+ +++I TQ P
Sbjct: 46 TTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGP 105
Query: 522 DMEHTVHDFWRMISEHTISTIIM 544
+ T+ DFWRMI E+++ I+M
Sbjct: 106 -LSTTLLDFWRMIWEYSVLIIVM 127
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 15/207 (7%)
Query: 54 EFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFV- 112
+FEQL + P + ++ +N KNRY D+ YD TRV L DYINA++V
Sbjct: 23 QFEQLYRKK-PGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQG-----NEDYINASYVN 76
Query: 113 ---LGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
+ K+I QGP+ HT FW+++W+Q L +++MLT L E + KC +YWP+
Sbjct: 77 MEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPP 136
Query: 170 EGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENP 229
+ +G F + +E Y+ RE+ + T +G EE ++ Y+AW D P++
Sbjct: 137 D-VMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTG---EEHTVTHLQYVAWPDHGVPDDS 192
Query: 230 SGLLKFIKHVNEAYSLEKGPILVHCRA 256
S L+F+ +V + ++ P+LVHC A
Sbjct: 193 SDFLEFVNYV-RSLRVDSEPVLVHCSA 218
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 363 KEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASF----IEAYDNTE 418
K+ + T AK +N DKNR + ++PYD RV+L +D YINAS+ I A +
Sbjct: 30 KKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQGNED---YINASYVNMEIPAANLVN 86
Query: 419 SFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 451
+I TQ P + HT FW+++ + +S I+ML+
Sbjct: 87 KYIATQGP-LPHTCAQFWQVVWDQKLSLIVMLT 118
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 458 KEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASF----IEAYDNTE 513
K+ + T AK +N DKNR + ++PYD RV+L +D YINAS+ I A +
Sbjct: 30 KKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQGNED---YINASYVNMEIPAANLVN 86
Query: 514 SFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P + HT FW+++ + +S I+ML+
Sbjct: 87 KYIATQGP-LPHTCAQFWQVVWDQKLSLIVMLT 118
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY I Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 71 KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 130
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 131 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 186
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E RS+ + AW Q PE+ LL+ + V E+ + GPI+VHC
Sbjct: 187 IQ-----YQEERRSVKHILFSAWPAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCS 241
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 242 AGIGRTGCFIATRIGCQQLKARGEV 266
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 367 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 418
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 419 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P M +TV DFW M+ + +S I+ML+ +L + KE+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT-QLREGKEK 152
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 462 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 513
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 514 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P M +TV DFW M+ + +S I+ML+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT 144
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY I Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 71 KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 130
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 131 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 186
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E RS+ + AW D Q PE+ LL+ + V E+ + GPI+VH
Sbjct: 187 IQ-----YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSS 241
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 242 AGIGRTGCFIATRIGCQQLKARGEV 266
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 367 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 418
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 419 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
+I TQ P M +TV DFW M+ + +S I+ML+ +L + KE+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT-QLREGKEK 152
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 462 KSTTNAKSEENKD------KNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTE 513
K +N S E+ D K+R ++I+P ++RV L A+ +YINA++I YD E
Sbjct: 52 KIPSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKE 111
Query: 514 S-FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P M +TV DFW M+ + +S I+ML+
Sbjct: 112 KVYIATQGP-MPNTVSDFWEMVWQEEVSLIVMLT 144
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 13/205 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKK-FICAQGPMEHTVNDFWR 137
K+RY I Q+RV L DYINAN++ GY +K +I QGPM +TV+DFW
Sbjct: 71 KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWE 130
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+W++ + +++MLT L E K KC YWP +EE TYG F + + + K+ EY +R+L
Sbjct: 131 MVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEE---TYGPFQIRIQDMKECPEYTVRQLT 186
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEA--YSLEKGPILVHCR 255
+ + E RS+ + AW Q PE+ LL+ + V E+ + GPI+VH
Sbjct: 187 IQ-----YQEERRSVKHILFSAWPAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSS 241
Query: 256 ALV-EVVQFGETEIRATDLKSTLET 279
A + F T I LK+ E
Sbjct: 242 AGIGRTGCFIATRIGCQQLKARGEV 266
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTES-FIITQDPDMEHTVH 433
+ K+R ++I+P ++RV L A+ +YINA++I YD E +I TQ P M +TV
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGP-MPNTVS 126
Query: 434 DFWRMISEHTISTIIMLSDRLTQAKEE 460
DFW M+ + +S I+ML+ +L + KE+
Sbjct: 127 DFWEMVWQEEVSLIVMLT-QLREGKEK 152
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 472 NKDKNRDESIIPYDRNRVILSPAKDY--SNYINASFIEAYDNTES-FIITQDPDMEHTVH 528
+ K+R ++I+P ++RV L A+ +YINA++I YD E +I TQ P M +TV
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGP-MPNTVS 126
Query: 529 DFWRMISEHTISTIIMLS 546
DFW M+ + +S I+ML+
Sbjct: 127 DFWEMVWQEEVSLIVMLT 144
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 14/183 (7%)
Query: 79 KNRYPDIKAYDQTRVKLT-PVDGVPGSDYINANFVLGYK-ELKKFICAQGPMEHTVNDFW 136
KNRY I +RV LT P P S YINAN++ GY E K +I QGP+ TV DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 137 RMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILREL 196
RM+W++H I++M+TN+EE ++ KC +YWPE++ + +++ + + L
Sbjct: 127 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQVAYDGVEITVQKVIHTEDY------RL 179
Query: 197 KLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK---GPILVH 253
+L+ SG +EER + Y + +W D + P+ LL ++ V EA E PI+VH
Sbjct: 180 RLISLKSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVH 237
Query: 254 CRA 256
C A
Sbjct: 238 CSA 240
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 475 KNRDESIIPYDRNRVILS---PAKDYSNYINASFIEAYDNTES-FIITQDPDMEHTVHDF 530
KNR ++I+P +RV L+ P S+YINA++I Y E +I TQ P + TV DF
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVS-TVADF 125
Query: 531 WRMISEHTISTIIMLSDGLEETNK 554
WRM+ + I+M+++ +EE N+
Sbjct: 126 WRMVWQEHTPIIVMITN-IEEMNE 148
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 380 KNRDESIIPYDRNRVILS---PAKDYSNYINASFIEAYDNTES-FIITQDPDMEHTVHDF 435
KNR ++I+P +RV L+ P S+YINA++I Y E +I TQ P + TV DF
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVS-TVADF 125
Query: 436 WRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEEN 472
WRM+ + I+M +T +E N+ T EE
Sbjct: 126 WRMVWQEHTPIIVM----ITNIEEMNEKCTEYWPEEQ 158
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 53 QEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFV 112
+E E L E P + +EN+ KNRY +I YD TRV L G YINA+F+
Sbjct: 53 KELENL-QELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLGDEGG-----YINASFI 106
Query: 113 ---LGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
+G +E +I QGP+ TV DFW+MIWEQ ++ M+T E KIKC +YWP
Sbjct: 107 KIPVGKEEFV-YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNIL 165
Query: 170 EGDKTYGDFI-VGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPEN 228
+ + + LV ++ +++R + L + E R I ++ AW D P
Sbjct: 166 GKTTMVSNRLRLALVRMQQLKGFVVRAMTL---EDIQTREVRHISHLNFTAWPDHDTPSQ 222
Query: 229 PSGLLKFIKHVNEAYSLEKGPILVHCRA 256
P LL FI ++ + GPI+ HC A
Sbjct: 223 PDDLLTFISYMRHIH--RSGPIITHCSA 248
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF--IITQDPDME 524
+++EN+ KNR ++I+PYD RV P D YINASFI+ E F I Q P +
Sbjct: 70 GQTKENRRKNRYKNILPYDATRV---PLGDEGGYINASFIKIPVGKEEFVYIACQGP-LP 125
Query: 525 HTVHDFWRMISEHTISTIIMLSDGLE 550
TV DFW+MI E + I M++ +E
Sbjct: 126 TTVGDFWQMIWEQKSTVIAMMTQEVE 151
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 372 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF--IITQDPDME 429
+++EN+ KNR ++I+PYD RV P D YINASFI+ E F I Q P +
Sbjct: 70 GQTKENRRKNRYKNILPYDATRV---PLGDEGGYINASFIKIPVGKEEFVYIACQGP-LP 125
Query: 430 HTVHDFWRMISEHTISTIIMLS 451
TV DFW+MI E + I M++
Sbjct: 126 TTVGDFWQMIWEQKSTVIAMMT 147
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 79 KNRYPDIKAYDQTRVKLT-PVDGVPGSDYINANFVLGYK-ELKKFICAQGPMEHTVNDFW 136
KNRY I +RV LT P P S YINAN++ GY E K +I QGP+ TV DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 137 RMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILREL 196
RM+W++H I++M+TN+EE ++ KC +YWPE++ + +++ + + L
Sbjct: 127 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQVAYDGVEITVQKVIHTEDY------RL 179
Query: 197 KLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK---GPILVH 253
+L+ SG +EER + Y + +W D + P+ LL ++ V EA E PI+VH
Sbjct: 180 RLISLKSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVH 237
Query: 254 CRA 256
A
Sbjct: 238 SSA 240
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 475 KNRDESIIPYDRNRVILS---PAKDYSNYINASFIEAYDNTES-FIITQDPDMEHTVHDF 530
KNR ++I+P +RV L+ P S+YINA++I Y E +I TQ P + TV DF
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVS-TVADF 125
Query: 531 WRMISEHTISTIIMLSDGLEETNK 554
WRM+ + I+M+++ +EE N+
Sbjct: 126 WRMVWQEHTPIIVMITN-IEEMNE 148
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 380 KNRDESIIPYDRNRVILS---PAKDYSNYINASFIEAYDNTES-FIITQDPDMEHTVHDF 435
KNR ++I+P +RV L+ P S+YINA++I Y E +I TQ P + TV DF
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVS-TVADF 125
Query: 436 WRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEEN 472
WRM+ + I+M +T +E N+ T EE
Sbjct: 126 WRMVWQEHTPIIVM----ITNIEEMNEKCTEYWPEEQ 158
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 79 KNRYPDIKAYDQTRVKLT-PVDGVPGSDYINANFVLGYK-ELKKFICAQGPMEHTVNDFW 136
KNRY I +RV LT P P S YINAN++ GY E K +I QGP+ TV DFW
Sbjct: 46 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 105
Query: 137 RMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILREL 196
RM+W++H I++M+TN+EE ++ KC +YWPE++ + +++ + + L
Sbjct: 106 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQVAYDGVEITVQKVIHTEDY------RL 158
Query: 197 KLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEK---GPILVH 253
+L+ SG +EER + Y + +W D + P+ LL ++ V EA E PI+VH
Sbjct: 159 RLISLKSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVH 216
Query: 254 CRA 256
A
Sbjct: 217 XSA 219
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 475 KNRDESIIPYDRNRVILS---PAKDYSNYINASFIEAYDNTES-FIITQDPDMEHTVHDF 530
KNR ++I+P +RV L+ P S+YINA++I Y E +I TQ P + TV DF
Sbjct: 46 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVS-TVADF 104
Query: 531 WRMISEHTISTIIMLSDGLEETNK 554
WRM+ + I+M+++ +EE N+
Sbjct: 105 WRMVWQEHTPIIVMITN-IEEMNE 127
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 380 KNRDESIIPYDRNRVILS---PAKDYSNYINASFIEAYDNTES-FIITQDPDMEHTVHDF 435
KNR ++I+P +RV L+ P S+YINA++I Y E +I TQ P + TV DF
Sbjct: 46 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVS-TVADF 104
Query: 436 WRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEEN 472
WRM+ + I+M +T +E N+ T EE
Sbjct: 105 WRMVWQEHTPIIVM----ITNIEEMNEKCTEYWPEEQ 137
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 14/201 (6%)
Query: 79 KNRYPDIKAYDQTRVKLTPVDGVPG-SDYINANFVLGYK-ELKKFICAQGPMEHTVNDFW 136
KNRY I +RV L P + S YINAN++ GY + K FI QGPM +TV+DFW
Sbjct: 46 KNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFW 105
Query: 137 RMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILREL 196
+M+W++ +++M+T L+E ++ KC YWPE+ YG V +++ + Y +R L
Sbjct: 106 QMVWQEDSPVIVMITKLKEKNE-KCVLYWPEKR---GIYGKVEVLVISVNECDNYTIRNL 161
Query: 197 KLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNE--AYSLEKGPILVHC 254
L + S + + Y Y +W D + P++ LL+ + V E S +GP++VHC
Sbjct: 162 VL-----KQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVVHC 216
Query: 255 RALV-EVVQFGETEIRATDLK 274
A + F T I LK
Sbjct: 217 SAGIGRTGCFIATSIGCQQLK 237
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 380 KNRDESIIPYDRNRVILSP---AKDYSNYINASFIEAYDNTE-SFIITQDPDMEHTVHDF 435
KNR ++I+P +RV L P S YINA++I Y E +FI TQ P M +TV DF
Sbjct: 46 KNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGP-MINTVDDF 104
Query: 436 WRMISEHTISTIIMLSDRLTQAKEENK 462
W+M+ + I+M +T+ KE+N+
Sbjct: 105 WQMVWQEDSPVIVM----ITKLKEKNE 127
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 475 KNRDESIIPYDRNRVILSP---AKDYSNYINASFIEAYDNTE-SFIITQDPDMEHTVHDF 530
KNR ++I+P +RV L P S YINA++I Y E +FI TQ P M +TV DF
Sbjct: 46 KNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGP-MINTVDDF 104
Query: 531 WRMISEHTISTIIMLSDGLEETNK 554
W+M+ + I+M++ L+E N+
Sbjct: 105 WQMVWQEDSPVIVMITK-LKEKNE 127
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 18/203 (8%)
Query: 79 KNRYPDIKAYDQTRVKLTP---VDGVPGSDYINANFVLGYK-ELKKFICAQGPMEHTVND 134
KNRY I +RV L P D + S YINAN++ GY + K FI QGPM +TVND
Sbjct: 59 KNRYKTILPNPLSRVCLRPKNITDSL--STYINANYIRGYSGKEKAFIATQGPMINTVND 116
Query: 135 FWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILR 194
FW+M+W++ +++M+T L+E ++ KC YWPE+ YG V + + Y +R
Sbjct: 117 FWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEKR---GIYGKVEVLVTGVTECDNYTIR 172
Query: 195 ELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNE--AYSLEKGPILV 252
L L + S + + Y Y +W D + P++ LL+ + V E S +GP++V
Sbjct: 173 NLVL-----KQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVV 227
Query: 253 HCRALV-EVVQFGETEIRATDLK 274
HC A + F T I LK
Sbjct: 228 HCSAGIGRTGCFIATSIGCQQLK 250
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 380 KNRDESIIPYDRNRVILSP---AKDYSNYINASFIEAYDNTE-SFIITQDPDMEHTVHDF 435
KNR ++I+P +RV L P S YINA++I Y E +FI TQ P M +TV+DF
Sbjct: 59 KNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKAFIATQGP-MINTVNDF 117
Query: 436 WRMISEHTISTIIMLSDRLTQAKEENK 462
W+M+ + I+M +T+ KE+N+
Sbjct: 118 WQMVWQEDSPVIVM----ITKLKEKNE 140
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 475 KNRDESIIPYDRNRVILSP---AKDYSNYINASFIEAYDNTE-SFIITQDPDMEHTVHDF 530
KNR ++I+P +RV L P S YINA++I Y E +FI TQ P M +TV+DF
Sbjct: 59 KNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKAFIATQGP-MINTVNDF 117
Query: 531 WRMISEHTISTIIMLSDGLEETNK 554
W+M+ + I+M++ L+E N+
Sbjct: 118 WQMVWQEDSPVIVMITK-LKEKNE 140
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 20/199 (10%)
Query: 75 ENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINAN---FVLGYKELKKFICAQGPMEHT 131
EN ++R ++ Y++ RV+L P + YINA+ V+G E +I QGP+ HT
Sbjct: 70 ENAERSRIREVVPYEENRVELIPTKE-NNTGYINASHIKVVVGGAEWH-YIATQGPLPHT 127
Query: 132 VNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPE--QEEGDKTYGDFIVGLVNEKKFG 189
+DFW+M+WEQ + ++ M+T EE + K +YWP+ + TYG F V
Sbjct: 128 CHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSV 187
Query: 190 EYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFI-------KHVNEA 242
Y LK+ SG +ER+++ Y W D PE+ G L ++ +H N
Sbjct: 188 CYATTGLKVKHLLSG---QERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSM 244
Query: 243 YSLEKG---PILVHCRALV 258
K PI+VHC A V
Sbjct: 245 LEGTKNRHPPIVVHCSAGV 263
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 363 KEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD-YSNYINASFIEAYDNTES-- 419
K+ N + A EN +++R ++PY+ NRV L P K+ + YINAS I+
Sbjct: 57 KKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINASHIKVVVGGAEWH 116
Query: 420 FIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKST 464
+I TQ P + HT HDFW+M+ E ++ I M++ A+EE T
Sbjct: 117 YIATQGP-LPHTCHDFWQMVWEQGVNVIAMVT-----AEEEGGRT 155
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 458 KEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD-YSNYINASFIEAYDNTES-- 514
K+ N + A EN +++R ++PY+ NRV L P K+ + YINAS I+
Sbjct: 57 KKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINASHIKVVVGGAEWH 116
Query: 515 FIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
+I TQ P + HT HDFW+M+ E ++ I M++
Sbjct: 117 YIATQGP-LPHTCHDFWQMVWEQGVNVIAMVT 147
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 23/220 (10%)
Query: 51 FQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVK--LTPVDGVPGS-DYI 107
Q+EF QL + P R+ + + +N+HKNRY DI A ++T L V PG YI
Sbjct: 21 MQREFVQLQRQENP-RNINFTTSLKNRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYI 79
Query: 108 NANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPE 167
N N + F+ Q P+ V DF + E+ +++V+MLT L E +K +YWPE
Sbjct: 80 NGNLI-DLDLPHTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPE 138
Query: 168 QEEGDKTY---GDFIVGLVNEKKFGEYILRELKLVRT-----ASGKESEERSIFQYHYLA 219
+EE ++ G + + + + + EL +VR GK + Q Y+
Sbjct: 139 EEEDSLSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHR--VLQVQYVG 196
Query: 220 WKDFQAPENPSG---LLKFIKHVNEAYSLEKGPILVHCRA 256
W D PE+ + LL IK+ + PILVHC A
Sbjct: 197 WPDHGVPESAASFDELLSVIKN-----CVTTSPILVHCSA 231
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 30 PITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYD 89
P T+ + +Y+ Q+EF L+ + P RS + + +N+HKNRY DI A +
Sbjct: 8 PFTKLSVQAQYER--------VQREFSLLLRQEDP-RSISFATSLKNRHKNRYLDILANE 58
Query: 90 QTRVKLTP-VDGVPGSD---YINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLE 145
T L P V PG+ YIN N + KF+ Q P+ + DF M++E+ +
Sbjct: 59 AT---LYPQVTDAPGASTPYYINGNLI-DLDLPHKFVACQAPVVQGIPDFLAMLYEKKIS 114
Query: 146 IVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEY--ILRELKLVR--- 200
+VIM+T LEE +K +YWPE+ GL + G+ + ELK+ R
Sbjct: 115 LVIMVTKLEEGGFVKADRYWPEERGSGSIAVSGNCGLTISEDPGKAYEVEDELKITRRYL 174
Query: 201 TASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRA 256
+ Q Y W D P++ + L + +V S P++VHC A
Sbjct: 175 ILQRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVKN--SPTTVPVVVHCSA 228
>pdb|1YP6|A Chain A, Van Der Waals Interactions Dominate Hydrophobic
Association In A Protein Binding Site Occluded From
Solvent Water
pdb|1YP7|A Chain A, Van Der Waals Interactions Dominate Hydrophobic
Association In A Protein Binding Site Occluded From
Solvent Water
Length = 174
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF----IITQDPDMEHTV 432
+K + E + YD P DY N++ A I D E+F + ++PD+ +
Sbjct: 84 DKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDG-ETFQLMGLFGREPDLSSDI 142
Query: 433 HD-FWRMISEHTI--STIIMLS--DRLTQAKE 459
+ F ++ EH I II LS +R QA+E
Sbjct: 143 KERFAQLCEEHGILRENIIDLSNANRCLQARE 174
>pdb|1QY0|A Chain A, Thermodynamics Of Binding Of 2-Methoxy-3-Isopropylpyrazine
And 2- Methoxy-3-Isobutylpyrazine To The Major Urinary
Protein
pdb|1QY1|A Chain A, Thermodynamics Of Binding Of 2-Methoxy-3-Isopropylpyrazine
And 2- Methoxy-3-Isobutylpyrazine To The Major Urinary
Protein
pdb|1QY2|A Chain A, Thermodynamics Of Binding Of 2-Methoxy-3-Isopropylpyrazine
And 2- Methoxy-3-Isobutylpyrazine To The Major Urinary
Protein
pdb|1ZND|A Chain A, Strong Solute-solute Dispersive Interactions In A Protein-
Ligand Complex
pdb|1ZNE|A Chain A, Strong Solute-Solute Dispersive Interactions In A Protein-
Ligand Complex
pdb|1ZNG|A Chain A, Strong Solute-Solute Dispersive Interactions In A Protein-
Ligand Complex
pdb|1ZNH|A Chain A, Strong Solute-Solute Dispersive Interactions In A Protein-
Ligand Complex
pdb|1ZNK|A Chain A, Strong Solute-Solute Dispersive Interactions In A Protein-
Ligand Complex
pdb|1ZNL|A Chain A, Strong Solute-Solute Dispersive Interactions In A Protein-
Ligand Complex
pdb|2DM5|A Chain A, Thermodynamic Penalty Arising From Burial Of A Ligand
Polar Group Within A Hydrophobic Pocket Of A Protein
Receptor
pdb|2OZQ|A Chain A, Crystal Structure Of Apo-Mup
Length = 174
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF----IITQDPDMEHTV 432
+K + E + YD P DY N++ A I D E+F + ++PD+ +
Sbjct: 84 DKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDG-ETFQLMGLYGREPDLSSDI 142
Query: 433 HD-FWRMISEHTI--STIIMLS--DRLTQAKE 459
+ F ++ EH I II LS +R QA+E
Sbjct: 143 KERFAQLCEEHGILRENIIDLSNANRCLQARE 174
>pdb|2LB6|A Chain A, Structure Of 18694da Mup, Typical To The Major Urinary
Protein Family: Mup9, Mup11, Mup15, Mup18 & Mup19
Length = 176
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF----IITQDPDMEHTV 432
+K + E + YD P DY N++ A I D E+F + ++PD+ +
Sbjct: 86 DKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDG-ETFQLMGLYGREPDLSSDI 144
Query: 433 HD-FWRMISEHTI--STIIMLS--DRLTQAKE 459
+ F ++ EH I II LS +R QA+E
Sbjct: 145 KERFAQLCEEHGILRENIIDLSNANRCLQARE 176
>pdb|1JV4|A Chain A, Crystal Structure Of Recombinant Major Mouse Urinary
Protein (Rmup) At 1.75 A Resolution
pdb|1DF3|A Chain A, Solution Structure Of A Recombinant Mouse Major Urinary
Protein
Length = 162
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF----IITQDPDMEHTV 432
+K + E + YD P DY N++ A I D E+F + ++PD+ +
Sbjct: 72 DKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDG-ETFQLMGLYGREPDLSSDI 130
Query: 433 HD-FWRMISEHTI--STIIMLS--DRLTQAKE 459
+ F ++ EH I II LS +R QA+E
Sbjct: 131 KERFAQLCEEHGILRENIIDLSNANRCLQARE 162
>pdb|1MUP|A Chain A, Pheromone Binding To Two Rodent Urinary Proteins Revealed
By X-Ray Crystallography
Length = 166
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF----IITQDPDMEHTV 432
+K + E + YD P DY N++ A I D E+F + ++PD+ +
Sbjct: 76 DKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDG-ETFQLMGLYGREPDLSSDI 134
Query: 433 HD-FWRMISEHTI--STIIMLS--DRLTQAKE 459
+ F ++ EH I II LS +R QA+E
Sbjct: 135 KERFAQLCEEHGILRENIIDLSNANRCLQARE 166
>pdb|1I04|A Chain A, Crystal Structure Of Mouse Major Urinary Protein-I From
Mouse Liver
pdb|1I05|A Chain A, Crystal Structure Of Mouse Major Urinary Protein (Mup-I)
Complexed With Hydroxy-Methyl-Heptanone
pdb|1I06|A Chain A, Crystal Structure Of Mouse Major Urinary Protein (Mup-I)
Complexed With Sec-Butyl-Thiazoline
Length = 180
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF----IITQDPDMEHTV 432
+K + E + YD P DY N++ A I D E+F + ++PD+ +
Sbjct: 90 DKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDG-ETFQLMGLYGREPDLSSDI 148
Query: 433 HD-FWRMISEHTI--STIIMLS--DRLTQAKE 459
+ F ++ EH I II LS +R QA+E
Sbjct: 149 KERFAQLCEEHGILRENIIDLSNANRCLQARE 180
>pdb|2NND|A Chain A, The Structural Identification Of The Interaction Site And
Functional State Of Rbp For Its Membrane Receptor
pdb|2NNE|A Chain A, The Structural Identification Of The Interaction Site And
Functional State Of Rbp For Its Membrane Receptor
Length = 178
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESF----IITQDPDMEHTV 432
+K + E + YD P DY N++ A I D E+F + ++PD+ +
Sbjct: 88 DKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDG-ETFQLMGLYGREPDLSSDI 146
Query: 433 HD-FWRMISEHTI--STIIMLS--DRLTQAKE 459
+ F ++ EH I II LS +R QA+E
Sbjct: 147 KERFAQLCEEHGILRENIIDLSNANRCLQARE 178
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 499 NYINA---SFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNKF 555
NY+ A +F + S +I Q + H+ +R + E+ +I+L +GLE+T +F
Sbjct: 305 NYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERF 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,106,358
Number of Sequences: 62578
Number of extensions: 736300
Number of successful extensions: 2600
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 343
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)