Query psy13252
Match_columns 558
No_of_seqs 485 out of 2925
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:00:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4228|consensus 100.0 4.1E-94 8.9E-99 790.7 24.4 441 30-505 522-968 (1087)
2 PHA02742 protein tyrosine phos 100.0 4E-66 8.6E-71 526.9 22.4 278 27-324 5-295 (303)
3 PHA02740 protein tyrosine phos 100.0 1.4E-65 3.1E-70 519.3 20.9 271 27-324 5-287 (298)
4 PHA02747 protein tyrosine phos 100.0 1.4E-64 3.1E-69 517.1 22.1 280 26-324 4-298 (312)
5 KOG0790|consensus 100.0 1.7E-65 3.6E-70 511.6 10.1 290 22-324 211-520 (600)
6 PHA02746 protein tyrosine phos 100.0 1.6E-63 3.5E-68 511.2 22.1 279 27-324 5-313 (323)
7 PHA02738 hypothetical protein; 100.0 4.8E-63 1E-67 507.2 20.7 273 29-324 7-293 (320)
8 KOG0792|consensus 100.0 1.8E-59 4E-64 510.5 19.5 273 31-322 852-1127(1144)
9 KOG0791|consensus 100.0 1.8E-59 3.8E-64 464.3 13.0 278 28-324 75-353 (374)
10 smart00194 PTPc Protein tyrosi 100.0 2.9E-58 6.4E-63 461.4 20.4 256 50-322 1-257 (258)
11 cd00047 PTPc Protein tyrosine 100.0 8.5E-53 1.8E-57 415.1 18.9 229 78-323 1-231 (231)
12 KOG0793|consensus 100.0 1E-53 2.3E-58 445.0 9.0 278 31-324 714-994 (1004)
13 COG5599 PTP2 Protein tyrosine 100.0 4.3E-53 9.3E-58 400.2 8.1 241 69-324 46-293 (302)
14 PF00102 Y_phosphatase: Protei 100.0 3.2E-50 6.9E-55 396.7 15.4 231 76-323 1-235 (235)
15 KOG4228|consensus 100.0 4.6E-50 9.9E-55 442.6 12.2 279 26-324 799-1084(1087)
16 PRK15375 pathogenicity island 100.0 3.2E-46 7E-51 386.6 17.5 271 18-320 228-525 (535)
17 KOG0789|consensus 100.0 1.8E-43 3.9E-48 378.3 16.5 261 48-325 101-367 (415)
18 PHA02742 protein tyrosine phos 100.0 2.8E-31 6E-36 270.9 7.3 130 428-558 7-137 (303)
19 PHA02747 protein tyrosine phos 100.0 1.6E-30 3.6E-35 266.1 8.0 130 428-558 7-138 (312)
20 PHA02746 protein tyrosine phos 100.0 5.3E-30 1.1E-34 263.4 7.6 129 428-558 7-156 (323)
21 PHA02738 hypothetical protein; 100.0 1.1E-29 2.4E-34 260.6 6.1 131 425-558 4-134 (320)
22 PHA02740 protein tyrosine phos 100.0 4.6E-29 1E-33 252.9 6.6 120 428-551 7-128 (298)
23 KOG0790|consensus 99.9 1.8E-25 3.9E-30 224.8 10.6 226 174-557 131-367 (600)
24 smart00194 PTPc Protein tyrosi 99.9 8.6E-25 1.9E-29 219.2 8.0 96 462-558 17-113 (258)
25 KOG0792|consensus 99.9 1.2E-23 2.6E-28 231.2 7.1 126 432-558 854-982 (1144)
26 COG5599 PTP2 Protein tyrosine 99.9 1.3E-22 2.9E-27 193.2 6.0 89 467-558 48-138 (302)
27 cd00047 PTPc Protein tyrosine 99.9 3E-22 6.5E-27 197.4 7.8 84 474-558 1-85 (231)
28 KOG0791|consensus 99.8 6.1E-22 1.3E-26 197.4 4.5 96 460-556 110-207 (374)
29 PF00102 Y_phosphatase: Protei 99.8 8.1E-21 1.8E-25 187.0 6.6 84 472-556 1-84 (235)
30 KOG0793|consensus 99.8 1E-20 2.3E-25 198.9 6.5 97 460-557 747-846 (1004)
31 KOG0789|consensus 99.7 1.3E-18 2.7E-23 186.4 6.3 90 466-557 121-210 (415)
32 PRK15375 pathogenicity island 99.7 6.9E-17 1.5E-21 168.8 6.8 74 479-558 305-380 (535)
33 smart00404 PTPc_motif Protein 99.6 1.1E-16 2.3E-21 137.1 3.3 101 211-322 1-104 (105)
34 smart00012 PTPc_DSPc Protein t 99.6 1.1E-16 2.3E-21 137.1 3.3 101 211-322 1-104 (105)
35 PTZ00242 protein tyrosine phos 99.1 6.8E-11 1.5E-15 110.2 4.5 132 119-319 16-153 (166)
36 PTZ00393 protein tyrosine phos 98.6 9.5E-08 2.1E-12 92.5 8.6 147 104-319 74-224 (241)
37 KOG1720|consensus 98.5 6.4E-08 1.4E-12 90.5 2.2 88 212-320 116-204 (225)
38 cd00127 DSPc Dual specificity 97.8 2.9E-05 6.2E-10 69.8 4.6 52 210-265 48-100 (139)
39 KOG2836|consensus 97.7 0.00012 2.6E-09 63.7 7.7 97 119-265 17-116 (173)
40 COG2453 CDC14 Predicted protei 97.7 3.4E-05 7.3E-10 73.1 3.8 85 218-320 78-163 (180)
41 smart00195 DSPc Dual specifici 97.1 0.0021 4.6E-08 57.7 7.8 21 246-266 77-98 (138)
42 PF00782 DSPc: Dual specificit 96.7 0.0046 1E-07 55.0 6.6 35 228-266 58-93 (133)
43 PF05706 CDKN3: Cyclin-depende 96.3 0.0045 9.8E-08 56.9 4.4 119 104-265 24-152 (168)
44 PF03162 Y_phosphatase2: Tyros 96.2 0.0043 9.3E-08 57.7 3.5 51 212-265 59-110 (164)
45 PRK12361 hypothetical protein; 95.6 0.037 8E-07 61.7 8.5 68 219-288 149-221 (547)
46 KOG1718|consensus 95.1 0.042 9.1E-07 50.3 5.5 100 210-313 56-169 (198)
47 PF14566 PTPlike_phytase: Inos 93.9 0.072 1.6E-06 48.7 4.4 43 218-263 98-141 (149)
48 PF04273 DUF442: Putative phos 92.4 0.19 4.1E-06 43.5 4.4 32 228-263 71-102 (110)
49 KOG2283|consensus 92.2 0.27 5.8E-06 52.8 6.1 45 218-263 78-124 (434)
50 TIGR01244 conserved hypothetic 91.9 0.3 6.6E-06 43.8 5.3 34 228-265 71-104 (135)
51 PF13350 Y_phosphatase3: Tyros 91.9 0.13 2.7E-06 47.8 2.9 38 120-158 20-57 (164)
52 COG5350 Predicted protein tyro 90.9 0.26 5.7E-06 44.5 3.6 42 218-261 65-108 (172)
53 COG2365 Protein tyrosine/serin 89.1 0.31 6.8E-06 48.5 3.1 34 230-266 122-156 (249)
54 KOG1716|consensus 87.7 1 2.3E-05 45.7 5.9 53 230-286 142-198 (285)
55 KOG1719|consensus 86.3 2.9 6.3E-05 38.0 7.0 42 223-266 87-129 (183)
56 KOG4471|consensus 83.8 0.66 1.4E-05 50.5 2.2 24 244-267 371-395 (717)
57 PLN02727 NAD kinase 80.4 2.1 4.6E-05 49.5 4.7 37 227-266 324-361 (986)
58 KOG1717|consensus 73.2 2.2 4.8E-05 42.1 2.0 29 232-264 240-269 (343)
59 COG3453 Uncharacterized protei 71.5 7.3 0.00016 34.0 4.5 31 228-262 72-102 (130)
60 KOG1572|consensus 54.8 17 0.00037 35.5 4.2 21 245-265 146-167 (249)
61 PF06602 Myotub-related: Myotu 48.9 13 0.00028 39.1 2.6 34 231-264 215-249 (353)
62 KOG1089|consensus 45.1 18 0.00038 40.1 3.0 47 367-415 448-496 (573)
63 cd01533 4RHOD_Repeat_2 Member 42.0 28 0.00061 29.3 3.3 16 246-261 65-80 (109)
64 KOG1147|consensus 41.5 9.9 0.00021 41.4 0.4 119 28-147 314-503 (712)
65 cd03738 SOCS_SOCS4 SOCS (suppr 39.9 16 0.00034 27.4 1.2 20 2-21 1-20 (56)
66 KOG1530|consensus 38.9 23 0.00049 31.5 2.1 30 233-262 75-104 (136)
67 cd01518 RHOD_YceA Member of th 35.6 24 0.00053 29.2 1.9 18 246-263 60-77 (101)
68 PF02061 Lambda_CIII: Lambda P 31.4 55 0.0012 22.7 2.6 24 214-237 2-25 (45)
69 PRK10287 thiosulfate:cyanide s 30.3 60 0.0013 27.5 3.4 18 246-263 59-76 (104)
70 cd03737 SOCS_SOCS3 SOCS (suppr 30.1 22 0.00049 25.0 0.6 16 5-20 4-19 (42)
71 KOG1147|consensus 29.5 10 0.00022 41.3 -1.8 61 481-542 421-503 (712)
72 KOG2386|consensus 29.2 1.1E+02 0.0024 32.5 5.8 69 218-287 92-168 (393)
73 COG0607 PspE Rhodanese-related 28.4 29 0.00064 28.8 1.2 18 246-263 60-77 (110)
74 cd01523 RHOD_Lact_B Member of 27.3 38 0.00082 27.9 1.6 17 246-262 60-76 (100)
75 cd01519 RHOD_HSP67B2 Member of 25.2 63 0.0014 26.7 2.6 17 246-262 65-81 (106)
76 PLN02160 thiosulfate sulfurtra 25.1 52 0.0011 29.3 2.2 18 246-263 80-97 (136)
77 PTZ00242 protein tyrosine phos 24.8 1.1E+02 0.0025 28.2 4.5 36 513-549 16-51 (166)
78 PF10727 Rossmann-like: Rossma 23.4 83 0.0018 27.8 3.1 28 231-258 80-107 (127)
79 cd01444 GlpE_ST GlpE sulfurtra 21.2 64 0.0014 26.1 1.9 17 246-262 55-71 (96)
80 cd01449 TST_Repeat_2 Thiosulfa 20.7 1.2E+02 0.0027 25.5 3.7 18 246-263 77-94 (118)
81 TIGR02981 phageshock_pspE phag 20.7 1.2E+02 0.0027 25.4 3.5 18 246-263 57-74 (101)
No 1
>KOG4228|consensus
Probab=100.00 E-value=4.1e-94 Score=790.68 Aligned_cols=441 Identities=39% Similarity=0.668 Sum_probs=376.7
Q ss_pred CcCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCceee
Q psy13252 30 PITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINA 109 (558)
Q Consensus 30 pi~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINA 109 (558)
||++++|.+++++++++++.+|++||+.| +.. +.++.++.+++|+.||||.||++|||+||+|...+|++++|||||
T Consensus 522 pI~v~dl~~~i~~~~~~~~~~F~~Eyesl-~~~--~~~~~~s~~~en~~KNRY~nilayD~sRV~L~~i~Gd~~sDYINA 598 (1087)
T KOG4228|consen 522 PIPVADLLEHIERRKADDGYGFKQEYESL-PEG--QFTWEHSNKKENKQKNRYENILAYDHSRVILPPIEGDPNSDYINA 598 (1087)
T ss_pred CccHHHHHHHHHHhhcccccchHHHHhhc-ccc--CCccccCccccccccccCCcchhhhcceeeecccCCCccccceee
Confidence 89999999999999999999999999999 444 678899999999999999999999999999999999999999999
Q ss_pred eeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeeeC
Q psy13252 110 NFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFG 189 (558)
Q Consensus 110 s~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~~ 189 (558)
||||||+.+++|||||||+++|++||||||||+++.+|||+|++.|.++.||.+|||+ ++.+||++.|++.+.+..+
T Consensus 599 nyIdGy~e~n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~r~kC~qYWP~---~t~~yGdi~V~~~~~~~~a 675 (1087)
T KOG4228|consen 599 NYIDGYKEPNAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFSRVKCAQYWPE---GTETYGDIKVTLVQTKPLA 675 (1087)
T ss_pred eeeecccccccceeccCCcccchHHHHHHheeccCCcEEEEecccccccccccccCCC---Cccccccccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999999999999993 5889999999999999999
Q ss_pred ceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceee
Q psy13252 190 EYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEI 268 (558)
Q Consensus 190 ~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i 268 (558)
+|++|+|.|... | ....|.|+||||++|||||+|..+.++|.|++.|+..++...||||||||||+ |||+| |
T Consensus 676 ~y~iRtf~l~~~--g-~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~f----i 748 (1087)
T KOG4228|consen 676 EYGIRTFALKKQ--G-ENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCF----I 748 (1087)
T ss_pred cceEEeeecccc--C-CCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceE----E
Confidence 999999999873 3 55789999999999999999999999999999999988878899999999999 99998 4
Q ss_pred ehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeecc---cCCchhhHHhhhhhhHhccc-c
Q psy13252 269 RATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLA---SGPDQVYVLRLTQAKEENKS-T 344 (558)
Q Consensus 269 ~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~---~~~~~~~~~~~~~~~~~~~~-~ 344 (558)
.+|.|.+.++.-+..+. .++++.+|.||..||||.+||+|||+++++ +|.+++.+..+.......+. .
T Consensus 749 ~iDaml~~~~~e~~vdi--------y~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~T~i~~~~~~~~~~~l~~~~ 820 (1087)
T KOG4228|consen 749 VIDAMLDRLECEGKVDI--------YGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGDTEVPASTLAPYSQKLKRID 820 (1087)
T ss_pred EeHHHHHHHHhhCccce--------echhHHHHhccccccccHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHhccCC
Confidence 55555444444333332 567889999999999999999999999997 69999888766655543332 1
Q ss_pred cccccchhhhhhhhhhhhhhcccccccccccccccCCCCCCCCCCCCceEEecC-CCCCCCCcccccccccCCCCceeee
Q psy13252 345 TNAKSEDLTVLGVRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP-AKDYSNYINASFIEAYDNTESFIIT 423 (558)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~knr~~~ilp~d~~rv~l~~-~~~~~~yinAs~i~g~~~~~~~i~t 423 (558)
+.....+++..+++|............|.+++|+.|||..+|+|||++||.|.+ ..++||||||||||||+.+++||+|
T Consensus 821 p~~~~t~le~EF~~L~~~~~~~~~~~~~~l~~N~~KNR~~~i~P~d~~rv~L~~~~G~~sdYINAs~idgy~~~~~fivt 900 (1087)
T KOG4228|consen 821 PPENKTGLEEEFKTLNSCKPRTRMMICGNLPENKSKNRQVNILPYDRNRVILIPTHGESSDYINASFIDGYRQPKAFIVT 900 (1087)
T ss_pred CCCCCcchHHHHHHHhhccccchhhhccccchhcccccccccCCchhcccceeccCCCcccccchhhhcccCCcceEEEe
Confidence 111222444444444444433333445999999999999999999999999998 3348999999999999999999999
Q ss_pred CCCCCcccHHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCCCCCCCCCCCCeeeecCCCCCCCcccc
Q psy13252 424 QDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINA 503 (558)
Q Consensus 424 q~P~~~~t~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~~~~~~~YInA 503 (558)
|+| +.+|+.|||||||++++..||||.+.... ++++-.+.. ....+|+.-+|.........+|++-
T Consensus 901 q~P-L~~T~~DFWrmi~d~~~tsiVmL~~l~~~--~~C~qyw~~-----------~g~~~yg~i~Ve~~~~~~~~~~t~r 966 (1087)
T KOG4228|consen 901 QGP-LAETVEDFWRMIWDQNVTSIVMLTELKHP--EKCPQYWPP-----------EGSQRYGPIEVEDMNEHINPQYTAR 966 (1087)
T ss_pred cCC-cccchHHHHHHhhccceeEEEEecccCcc--cccccccCC-----------cCceecCcEEEEecccccchhhhhh
Confidence 999 99999999999999999999999998887 555554432 2345788888887766666666665
Q ss_pred cc
Q psy13252 504 SF 505 (558)
Q Consensus 504 s~ 505 (558)
-|
T Consensus 967 ~f 968 (1087)
T KOG4228|consen 967 EF 968 (1087)
T ss_pred hh
Confidence 55
No 2
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=4e-66 Score=526.92 Aligned_cols=278 Identities=28% Similarity=0.437 Sum_probs=240.7
Q ss_pred CCCCcC-HHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCC
Q psy13252 27 DMAPIT-RADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSD 105 (558)
Q Consensus 27 ~~~pi~-~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~d 105 (558)
...+++ +.+|.+.+++ .+...-+++||+.|.... ...++..+..++|..||||.||+|||++||+|+..++ ++|
T Consensus 5 ~~~~~~~~~~~~~~~~~--~~~~~~i~~E~~~i~~~~-~~~~~~~~~~~~N~~KNRy~~i~~~D~tRV~L~~~~~--~~d 79 (303)
T PHA02742 5 CSKKNSFAKNCEQLIEE--SNLAEILKEEHEHIMQEI-VAFSCNESLELKNMKKCRYPDAPCFDRNRVILKIEDG--GDD 79 (303)
T ss_pred cccccCcHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-CCCchhhccChhhhhcCCCCCCCCCCCCEEEeCCCCC--CCC
Confidence 345688 8999998876 344556899999995433 3578888889999999999999999999999986543 689
Q ss_pred ceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeee
Q psy13252 106 YINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNE 185 (558)
Q Consensus 106 YINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~ 185 (558)
|||||||+|+..+++|||||||+++|++|||+||||++|.+|||||++.|.|+.||.+|||...++...||+|+|++.++
T Consensus 80 YINAsyI~g~~~~~~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~ 159 (303)
T PHA02742 80 FINASYVDGHNAKGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKI 159 (303)
T ss_pred cEEEeeecCCCCCCeEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEEE
Confidence 99999999999889999999999999999999999999999999999999999999999998777788999999999999
Q ss_pred eeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcC-----------CCCCCEEEEc
Q psy13252 186 KKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYS-----------LEKGPILVHC 254 (558)
Q Consensus 186 ~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~-----------~~~~PIvVHC 254 (558)
....+|++|+|.|++.. ...+|.|+||||++|||+|+|.++..+|+|+..|++... ...+||||||
T Consensus 160 ~~~~~~~~~~l~l~~~~---~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHC 236 (303)
T PHA02742 160 KSFRNYAVTNLCLTDTN---TGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHC 236 (303)
T ss_pred EEcCCEEEEEEEEEECC---CCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEC
Confidence 98999999999998843 347899999999999999999999999999999986431 1247999999
Q ss_pred chhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeeccc
Q psy13252 255 RALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLAS 324 (558)
Q Consensus 255 saGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~ 324 (558)
|||+ |||+||+++++++++.. .... -..+.++.+|+||++||||.+||.|||.+++++
T Consensus 237 saGvGRTGtF~aid~~i~~~~~-------~~~v-----~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y 295 (303)
T PHA02742 237 SAGLDRAGAFCAIDICISKYNE-------RAII-----PLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIF 295 (303)
T ss_pred CCCCchhHHHHHHHHHHHHHHh-------cCCC-----CHHHHHHHHHhhcccccCCHHHHHHHHHHHHHH
Confidence 9999 99999998887755432 1111 136778889999999999999999999999876
No 3
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.4e-65 Score=519.32 Aligned_cols=271 Identities=20% Similarity=0.300 Sum_probs=234.3
Q ss_pred CCCCcCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCC--CCCCCCCCCcceEecCCCCCCCC
Q psy13252 27 DMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNR--YPDIKAYDQTRVKLTPVDGVPGS 104 (558)
Q Consensus 27 ~~~pi~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR--~~ni~p~D~tRV~L~~~~~~~~~ 104 (558)
..+++++++|.+++++. +...++.+||++|... ...+++..+..++|+.||| |.||+||||+||+|+. ++
T Consensus 5 ~~~~~~~~~f~~~~~~~--~~~~~i~~E~~~i~~~-~~~~~~~~~~~~~n~~knr~r~~~i~~~D~sRV~L~~-----~~ 76 (298)
T PHA02740 5 DAVDINGMDFINFINKP--DLLSCIIKEYRAIVPE-HEDEANKACAQAENKAKDENLALHITRLLHRRIKLFN-----DE 76 (298)
T ss_pred cccccCHHHHHHHHhCC--CHHHHHHHHHHHHhcc-CccchhhhhhchhhhcccccccCCcCCccCceEEecC-----CC
Confidence 45679999999999884 4456899999999533 3456788888999999996 6899999999999964 45
Q ss_pred CceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccc-cccCCCCCCcceeceEEEEEe
Q psy13252 105 DYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCA-KYWPEQEEGDKTYGDFIVGLV 183 (558)
Q Consensus 105 dYINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~-~YwP~~~~~~~~~g~~~V~~~ 183 (558)
||||||||+||..+++|||||||+++|++|||+||||++|.+|||||+..| .||. +|||...+....||+|.|++.
T Consensus 77 ~YINAnyVdG~~~~~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e---~kc~~~YWP~~~~~~~~~g~f~V~~~ 153 (298)
T PHA02740 77 KVLDARFVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHAD---KKCFNQFWSLKEGCVITSDKFQIETL 153 (298)
T ss_pred CcEEEEEecCCCCCCcEEEecCCchhhHHHHHHHHHhcCCCEEEEcccccc---ccccccCCCCCCCCeEEECCEEEEEE
Confidence 899999999999999999999999999999999999999999999999977 4798 999997776788999999999
Q ss_pred eeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHc--------CCCCCCEEEEcc
Q psy13252 184 NEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAY--------SLEKGPILVHCR 255 (558)
Q Consensus 184 ~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~--------~~~~~PIvVHCs 255 (558)
++....+|++|.|.|++. .+++|.|+||||++|||+|+|.++..+|+|+..|++.. ....+|||||||
T Consensus 154 ~~~~~~~~~~~~l~l~~~----~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCS 229 (298)
T PHA02740 154 EIIIKPHFNLTLLSLTDK----FGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCI 229 (298)
T ss_pred EEEecCCEEEEEEEEEcC----CCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECC
Confidence 998899999999999762 34689999999999999999999999999999987532 224689999999
Q ss_pred hhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeeccc
Q psy13252 256 ALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLAS 324 (558)
Q Consensus 256 aGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~ 324 (558)
||+ |||+||+++++++++... ... -..+.++.+|+||++|||+.+||.|||.+++++
T Consensus 230 aGvGRTGtFcaiDi~l~~~~~~-------~~v-----di~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y 287 (298)
T PHA02740 230 DGISSSAVFCVFDICATEFDKT-------GML-----SIANALKKVRQKKYGCMNCLDDYVFCYHLIAAY 287 (298)
T ss_pred CCCchhHHHHHHHHHHHHHHhc-------Ccc-----cHHHHHHHHHhhCccccCCHHHHHHHHHHHHHH
Confidence 999 999999999888666321 111 126778889999999999999999999999876
No 4
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.4e-64 Score=517.13 Aligned_cols=280 Identities=27% Similarity=0.414 Sum_probs=240.3
Q ss_pred CCCCCcCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCC
Q psy13252 26 PDMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSD 105 (558)
Q Consensus 26 ~~~~pi~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~d 105 (558)
....++++++|.+++++. +....+.+||+.|. ....++++..+..++|+.||||.||+|||++||+|.+.++ ..+|
T Consensus 4 ~~~~~~~~~~f~~~~~~~--~~~~~i~~E~~~i~-~~~~~~~~~~~~~~~N~~kNRy~di~p~D~sRV~L~~~~~-~~~d 79 (312)
T PHA02747 4 NCFAECRAIDFLKRRNQL--NCFGIIRDEHHQII-LKPFDGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGGG-STSD 79 (312)
T ss_pred ccccccCHHHHHHHHhCC--CHHHHHHHHHHHHh-cCCCCChhhhhhCchhhccCCCCCCCCCCCCEeEecCCCC-CCCC
Confidence 345679999999988774 34456899999994 3344567777889999999999999999999999987544 4689
Q ss_pred ceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCcc-ccCccccccccCCCCCCcceeceEEEEEee
Q psy13252 106 YINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLE-EYSKIKCAKYWPEQEEGDKTYGDFIVGLVN 184 (558)
Q Consensus 106 YINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~-E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~ 184 (558)
|||||||+|+..+++|||||||+++|++|||+||||++|.+|||||.+. |.|+.||.+|||.+.++...||+|.|++.+
T Consensus 80 YINAsyV~g~~~~~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V~~~~ 159 (312)
T PHA02747 80 YIHANWIDGFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETLK 159 (312)
T ss_pred cEEeeeecCCCCCCeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCCCCCCCeEeeeEEEEEEE
Confidence 9999999999989999999999999999999999999999999999999 899999999999877778899999999999
Q ss_pred eeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcC----------CCCCCEEEEc
Q psy13252 185 EKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYS----------LEKGPILVHC 254 (558)
Q Consensus 185 ~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~----------~~~~PIvVHC 254 (558)
+....+|+.|+|.|+... ...+|.|+||||++|||+|+|.++..+++|+..|+..+. ...+||||||
T Consensus 160 ~~~~~~~~~~~l~l~~~~---~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHC 236 (312)
T PHA02747 160 TSVRAKYILTLIEITDKI---LKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHC 236 (312)
T ss_pred EEecCCeEEEEEEEEECC---CCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEe
Confidence 988899999999998843 347899999999999999999999999999888865421 1237999999
Q ss_pred chhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeee---eeeeccc
Q psy13252 255 RALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLI---HQVNLAS 324 (558)
Q Consensus 255 saGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi---~~~~l~~ 324 (558)
|||+ |||+||++++++++|.. .... -..+.++.+|+||++||||.+||.|| |++++.+
T Consensus 237 saGvGRtGtfcaidi~i~~l~~-------~~~v-----~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~ 298 (312)
T PHA02747 237 SDGVGKTGIFCAVDICLNQLVK-------RKAI-----CLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYF 298 (312)
T ss_pred cCCCcchhHHHHHHHHHHHHHh-------cCCC-----CHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 9999 99999999888766532 1111 13677888999999999999999999 9987643
No 5
>KOG0790|consensus
Probab=100.00 E-value=1.7e-65 Score=511.61 Aligned_cols=290 Identities=34% Similarity=0.599 Sum_probs=243.7
Q ss_pred cCCCCCCCCcCHHhHHHHHHHHhcC------CchhHHHHHHhhhhCCCCC-CchhhhhhhhccCCCCCCCCCCCCCcceE
Q psy13252 22 ASNPPDMAPITRADIVMEYDERHYD------SDYGFQQEFEQLVNEHFPD-RSTKASEARENQHKNRYPDIKAYDQTRVK 94 (558)
Q Consensus 22 ~~~~~~~~pi~~~~~~~~~~~~~~~------~~~~~~~Ef~~l~~~~~~~-~~~~~~~~~~N~~KNR~~ni~p~D~tRV~ 94 (558)
+--|+..+.|.+++|..++.++.+. .+.||++||++|++....+ .+...+..++|+.||||.||+|||||||+
T Consensus 211 LrqP~naTrI~Aa~i~~Rve~l~k~~e~~d~~k~GfwEEFesLqq~~~~~~~sr~EG~r~eN~~KNRYkNIlPfDHtRVi 290 (600)
T KOG0790|consen 211 LRQPLNATRINAADIENRVEELNKKQESEDTAKAGFWEEFESLQQQEVKNLHSRLEGQRPENKGKNRYKNILPFDHTRVI 290 (600)
T ss_pred eeccccccchhhhhHHHHHHHHhccccchhhhhcchhHHHHHhhhhhhHhhhhhhccccchhhccccccccCcccceeeE
Confidence 4467888999999999999998863 3679999999995433222 34567889999999999999999999999
Q ss_pred ecCC-CCCCCCCceeeeeecCC--------ccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCcccccccc
Q psy13252 95 LTPV-DGVPGSDYINANFVLGY--------KELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYW 165 (558)
Q Consensus 95 L~~~-~~~~~~dYINAs~I~g~--------~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~Yw 165 (558)
|... +..+++||||||||-.- ..++.||||||-|.+|+.|||+||||+|+++|||.|...|.|+.||.+||
T Consensus 291 L~d~~~n~pgsdYINAnyi~~~~q~~~~~~~~kKsyIAtQGCL~nTVnDFW~MvwQENsrVIVMtTkE~ERgK~KC~~YW 370 (600)
T KOG0790|consen 291 LQDRDPNIPGSDYINANYIMIEFQRLCNNSKPKKSYIATQGCLQNTVNDFWRMVWQENSRVIVMTTKEVERGKSKCVKYW 370 (600)
T ss_pred eecCCCCCccchhcccchhhhhhhhccCccccccceeehhhHHHHHHHHHHHHHHhccceEEEEehhhhhcccccccccC
Confidence 9876 45689999999998321 22368999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeceEEEEEeeeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCC
Q psy13252 166 PEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL 245 (558)
Q Consensus 166 P~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~ 245 (558)
|++ +....||.+.|++.++....+|++|+|.++.. +.+...|.|+||||..|||||||.+|..+|+|++.|+..+..
T Consensus 371 Pee-~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~--~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~ 447 (600)
T KOG0790|consen 371 PEE-GALEEYGVMRVRNVKESDTHDYTLRELKVSKL--GNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQES 447 (600)
T ss_pred Ccc-cchhhcCceEEEeccccccccceehheeeccc--cCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhcc
Confidence 965 45789999999999999999999999999864 335688999999999999999999999999999999987643
Q ss_pred --CCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhh-HHHHHHHHhhcccccccccceeeeeeeee
Q psy13252 246 --EKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSEL-ELEFEETHNKCSDHLIRSACQFYLIHQVN 321 (558)
Q Consensus 246 --~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~-~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~ 321 (558)
..||||||||||+ ||||| |.|+.|.+.|. .... -|.+ ....+...|.||.+||||+.||.|||.++
T Consensus 448 l~~AgpIvVHCSAGIGrTGTf----iViD~lld~I~---~~Gl---dc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Av 517 (600)
T KOG0790|consen 448 LMDAGPIVVHCSAGIGRTGTF----IVIDMLLDQIR---EKGL---DCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAV 517 (600)
T ss_pred ccccCcEEEEccCCcCCcceE----EEhHHHHHHHH---hcCC---CCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHH
Confidence 6789999999999 99999 45555544443 2222 1221 24456778999999999999999999998
Q ss_pred ccc
Q psy13252 322 LAS 324 (558)
Q Consensus 322 l~~ 324 (558)
..|
T Consensus 518 qhy 520 (600)
T KOG0790|consen 518 QHY 520 (600)
T ss_pred HHH
Confidence 654
No 6
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.6e-63 Score=511.24 Aligned_cols=279 Identities=24% Similarity=0.390 Sum_probs=236.6
Q ss_pred CCCCcCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCC------
Q psy13252 27 DMAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDG------ 100 (558)
Q Consensus 27 ~~~pi~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~------ 100 (558)
...++++.+|.+...+ .+....+.+||.+|. .....+++..+..++|+.||||.||+||||+||+|.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~i~-~~~~~~t~~~~~~~~N~~KNRy~di~p~D~sRV~L~~~~~~~~~~~ 81 (323)
T PHA02746 5 CFEIFNAFDFFDKTNH--AKFCEFVLLEHAEVM-DIPIRGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDV 81 (323)
T ss_pred ccccCCHHHHHHHhcC--CCHHHHHHHHHHHHh-cCCCCcchhhccChhhccccCCCCCCCCcCCEEEecCCCCcccccc
Confidence 3556889999987766 344556899999994 3344577888889999999999999999999999986432
Q ss_pred -------------CCCCCceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCC
Q psy13252 101 -------------VPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPE 167 (558)
Q Consensus 101 -------------~~~~dYINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~ 167 (558)
.+++||||||||+|+..+++|||||||+++|++|||+||||++|.+|||||+++| ++.||.+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~dYINAsyV~g~~~~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e-~~~kc~~YWP~ 160 (323)
T PHA02746 82 GDSDGKKIEVTSEDNAENYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDD-DDEKCFELWTK 160 (323)
T ss_pred ccccccccccccCCCCCCeEEEecccCCCCCCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEeccccc-CCccCCCCCCC
Confidence 2458999999999999889999999999999999999999999999999999864 67899999999
Q ss_pred CCCCcceeceEEEEEeeeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcC---
Q psy13252 168 QEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYS--- 244 (558)
Q Consensus 168 ~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~--- 244 (558)
..+....||+|.|++.+.....+|+.|.|.|+... ...+|.|+||||++|||+|+|.++..+|+|++.|++.+.
T Consensus 161 ~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l~~~~---~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~ 237 (323)
T PHA02746 161 EEDSELAFGRFVAKILDIIEELSFTKTRLMITDKI---SDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELI 237 (323)
T ss_pred CCCCCeEEcCEEEEEEEEEEcCCeEEEEEEEEECC---CCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHh
Confidence 87777899999999998888889999999998743 346899999999999999999999999999999986431
Q ss_pred -------CCCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeee
Q psy13252 245 -------LEKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYL 316 (558)
Q Consensus 245 -------~~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~f 316 (558)
...+|||||||||+ |||+||+++++++++.. ..... ..+.++.+|+||.+|||+.+||.|
T Consensus 238 ~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~-------~~~vd-----v~~~V~~lR~qR~~~Vqt~~QY~F 305 (323)
T PHA02746 238 KQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEK-------EKEVC-----LGEIVLKIRKQRHSSVFLPEQYAF 305 (323)
T ss_pred hhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHh-------cCCCC-----HHHHHHHHHhcccccCCCHHHHHH
Confidence 12489999999999 99999998887765532 11111 256788899999999999999999
Q ss_pred eeeeeccc
Q psy13252 317 IHQVNLAS 324 (558)
Q Consensus 317 i~~~~l~~ 324 (558)
||++++.+
T Consensus 306 ~y~~l~~~ 313 (323)
T PHA02746 306 CYKALKYA 313 (323)
T ss_pred HHHHHHHH
Confidence 99998643
No 7
>PHA02738 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-63 Score=507.15 Aligned_cols=273 Identities=26% Similarity=0.499 Sum_probs=233.9
Q ss_pred CCcCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCcee
Q psy13252 29 APITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYIN 108 (558)
Q Consensus 29 ~pi~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYIN 108 (558)
+.+++++|.+.+++ .+....+.+||+.|... ..+++...+. .|+.||||.||+|||++||+|+...+ .+||||
T Consensus 7 ~~~~~~~fl~~~~~--~~~~~~i~~E~~~i~~~-~~~~t~~~~~--~N~~kNR~~~v~~~d~sRV~L~~~~~--~~dYIN 79 (320)
T PHA02738 7 RELKYAEFLALMEK--SDCEEVITREHQKVISE-KVDGTFNAEK--KNRKLNRYLDAVCFDHSRVILPAERN--RGDYIN 79 (320)
T ss_pred ccCCHHHHHHHHhC--CCHHHHHHHHHHHHhcC-CCCcchhHHH--HhhhhCCCCCcCCCcCCEEEeCCCCC--CCCceE
Confidence 45788999888765 34455689999999543 3345554443 49999999999999999999976433 589999
Q ss_pred eeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeee
Q psy13252 109 ANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKF 188 (558)
Q Consensus 109 As~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~ 188 (558)
||||+|+..+++|||||||+++|++|||+||||++|.+|||||+..|.++.+|.+|||...++...||+|+|++.++...
T Consensus 80 AsyVdg~~~~~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V~~~~~~~~ 159 (320)
T PHA02738 80 ANYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQVETH 159 (320)
T ss_pred eEEecCCCCCceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCCCCCCceEeccEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999878889999999999999999
Q ss_pred CceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcC-------------CCCCCEEEEcc
Q psy13252 189 GEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYS-------------LEKGPILVHCR 255 (558)
Q Consensus 189 ~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~-------------~~~~PIvVHCs 255 (558)
.+|+.|+|.|+. + .+.+|.|+||||++|||+|+|.++..+++|+..|++... ...+|||||||
T Consensus 160 ~~~~~~~l~l~~---~-~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs 235 (320)
T PHA02738 160 PHYVKSTLLLTD---G-TSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCN 235 (320)
T ss_pred CCeEEEEEEEEe---C-CCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcC
Confidence 999999999987 2 357899999999999999999999999999999986431 12479999999
Q ss_pred hhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeeccc
Q psy13252 256 ALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLAS 324 (558)
Q Consensus 256 aGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~ 324 (558)
||+ |||+|||++++++++.. .... -..+.++.+|+||++|||+.+||.|||.+++++
T Consensus 236 ~GiGRtGtFcaidi~i~~~~~-------~~~v-----dv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y 293 (320)
T PHA02738 236 AGLGRTPCYCVVDISISRFDA-------CATV-----SIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRY 293 (320)
T ss_pred CCCChhhhhhHHHHHHHHHHh-------cCCc-----CHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHH
Confidence 999 99999999988766532 1111 125778889999999999999999999999865
No 8
>KOG0792|consensus
Probab=100.00 E-value=1.8e-59 Score=510.51 Aligned_cols=273 Identities=31% Similarity=0.524 Sum_probs=234.6
Q ss_pred cCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCceeee
Q psy13252 31 ITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINAN 110 (558)
Q Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINAs 110 (558)
-+..+.+..+++... +.++..||+.|.... +...+.+|..++|..||||.||+|||.|||.|.+..+. ..+|||||
T Consensus 852 ~~~dks~~~L~~~L~--~g~v~~efE~i~rkk-p~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~~-nagYINAS 927 (1144)
T KOG0792|consen 852 ASLDKSCIILAQGLE--DGMVFTEFEQIYRKK-PGMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKDN-NAGYINAS 927 (1144)
T ss_pred cchhhHHHHHHhhhh--cCchHHHHHHHhhhC-CCceeeeccccccccccccCCcCCCcCceeeeccCCCC-Ccccccce
Confidence 345555555555433 335788999995444 78899999999999999999999999999999987654 67999999
Q ss_pred eecCCc--cccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeee
Q psy13252 111 FVLGYK--ELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKF 188 (558)
Q Consensus 111 ~I~g~~--~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~ 188 (558)
+|...- ..+.|||||||++.|+.|||+||||+++.+|||||..+|+|+.||++|||..+.++++||.|.|+|......
T Consensus 928 ~i~ipvgg~e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t 1007 (1144)
T KOG0792|consen 928 HIEIPVGGIENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQT 1007 (1144)
T ss_pred eeEeeecceeEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEeccc
Confidence 997652 347999999999999999999999999999999999999999999999999877789999999999999999
Q ss_pred CceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhccee
Q psy13252 189 GEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETE 267 (558)
Q Consensus 189 ~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~ 267 (558)
..|+.|.|.|.+..++ +.|+|+|+||++|||||+|+++..||+|+++|+..+.....|||||||||+ |||++
T Consensus 1008 ~~y~tr~m~l~~~~t~---eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVl---- 1080 (1144)
T KOG0792|consen 1008 TCYVTREMTLKDLQTR---EERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVL---- 1080 (1144)
T ss_pred ccEEEEeEEEeeccCC---ceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceeh----
Confidence 9999999999996654 889999999999999999999999999999999987766779999999999 99988
Q ss_pred eehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeec
Q psy13252 268 IRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNL 322 (558)
Q Consensus 268 i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l 322 (558)
|+++-+...++. +... -...+++.+|.||..||||..||.|+|.+||
T Consensus 1081 Il~e~~l~lle~----Ne~v----di~divr~mR~QR~~mVQT~~QYkFVyevil 1127 (1144)
T KOG0792|consen 1081 ILMETALCLLEH----NEPV----DILDIVRTMRDQRAMMVQTLSQYKFVYEVIL 1127 (1144)
T ss_pred HHHHHHHHHHhc----CCCC----CHHHHHHHHHHHHhhhccchHHhhHHHHHHH
Confidence 444444444442 1111 1257789999999999999999999999987
No 9
>KOG0791|consensus
Probab=100.00 E-value=1.8e-59 Score=464.27 Aligned_cols=278 Identities=35% Similarity=0.670 Sum_probs=246.2
Q ss_pred CCCcCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCce
Q psy13252 28 MAPITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYI 107 (558)
Q Consensus 28 ~~pi~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYI 107 (558)
..||+++++..+++.+.++++.+|++||+.|. ....+.+...|.++.|..||||.||+|||++||+|.+....+++|||
T Consensus 75 s~~i~len~e~~~~~~~~dsn~~f~eey~~lk-~~g~~~~~~aA~l~~n~~knr~~nilpYd~Srvkl~~~~e~~~~DYi 153 (374)
T KOG0791|consen 75 TNPVSLENFELHVKKMSADSNYKFSEEYNELK-LVGLDQSKLAALLPLNRPKNRYTNILPYDNSRVKLSPVNEEEGSDYI 153 (374)
T ss_pred CCceeeccchhhhhhcccccchhhHHHHhhhh-hhcccchhhhhhcCCCCCcCCcCCCCCcccccceeccccccchhhhh
Confidence 34999999999999999999999999999994 33334567788999999999999999999999999998888999999
Q ss_pred eeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeee
Q psy13252 108 NANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKK 187 (558)
Q Consensus 108 NAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~ 187 (558)
||||+.|+..++.|||||||+++|.++||+||||+++.+|||||...|.++.||+.|||.... ...||+++|..+.+..
T Consensus 154 nA~~~Pg~~s~~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~R~kc~~ywP~~~~-~~~~gdi~V~~v~e~~ 232 (374)
T KOG0791|consen 154 NASYIPGYNSPREFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKGRVKCDEYWPDEEV-PVAYGDITVTMVSEES 232 (374)
T ss_pred hhhhcCCCCCcceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeecccccchhhhhhcccccc-cceeccEEEEEechhh
Confidence 999999999999999999999999999999999999999999999999999999999999865 4899999999999999
Q ss_pred eCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcce
Q psy13252 188 FGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGET 266 (558)
Q Consensus 188 ~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~ 266 (558)
..++.+|.|.+.. ..++|.+.||||+.|||||+|..+..++.|++.++..-....+|++||||||| |||||
T Consensus 233 ~~~w~ir~~~l~~-----~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTF--- 304 (374)
T KOG0791|consen 233 LDEWTIREFRLNY-----AGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTF--- 304 (374)
T ss_pred cCCceEEEEeeec-----ccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccch---
Confidence 9999999999973 34789999999999999999999999999999999877667889999999999 99999
Q ss_pred eeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeeccc
Q psy13252 267 EIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLAS 324 (558)
Q Consensus 267 ~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~ 324 (558)
|+++.|..++..-+..+ ...++.-+|..|..||||++||+|||.|+++.
T Consensus 305 -iald~LLqq~~~~~~vd--------i~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 305 -IALDRLLQQIDSEETVD--------IFGVVLELRSARMLMVQTEDQYVFLHQCVLES 353 (374)
T ss_pred -HhHHHHHHHhccccccc--------HHHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence 55555544443222111 24455667889999999999999999998753
No 10
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=100.00 E-value=2.9e-58 Score=461.44 Aligned_cols=256 Identities=39% Similarity=0.698 Sum_probs=223.7
Q ss_pred hHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCceeeeeecCCccccceEEecCCCC
Q psy13252 50 GFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPME 129 (558)
Q Consensus 50 ~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINAs~I~g~~~~~~yIatQ~Pl~ 129 (558)
+|.+||+.|........++..+..++|..||||.||+|||++||+|...++ ..+||||||||+|+..+++||+||+|++
T Consensus 1 ~~~~e~~~i~~~~~~~~~~~~~~~~~n~~kNR~~~v~~~d~~RV~l~~~~~-~~~~YInAs~v~~~~~~~~fI~tQ~P~~ 79 (258)
T smart00194 1 GLEEEFEKLDRLKPDDESCTVAARPENRDKNRYKDVLPYDHTRVKLTPPPG-EGSDYINASYIDGPNGPKAYIATQGPLP 79 (258)
T ss_pred ChHHHHHHhhccCCCCccccccCCccccccCCCCCCCCCCCCEeEccCCCC-CCCCceeeeeEecCCCccceEEeCCCch
Confidence 378999999543322257778889999999999999999999999987554 4689999999999988899999999999
Q ss_pred CchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeeeCceEEEEEEEEEecCCCCCce
Q psy13252 130 HTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEE 209 (558)
Q Consensus 130 ~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~v~~~~~g~~~~~ 209 (558)
+|++|||+||||+++.+||||++..|.++.+|.+|||.+. +...||.|+|++.+++...+++.|+|.|+.. +.+++
T Consensus 80 ~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~~~-~~~~~g~~~V~~~~~~~~~~~~~~~l~v~~~---~~~~~ 155 (258)
T smart00194 80 STVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPEEE-EPLTYGDITVTLKSVEKVDDYTIRTLEVTNT---GCSET 155 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCCCC-CcceECCEEEEEEEEEecCCEEEEEEEEEEC---CCCCc
Confidence 9999999999999999999999999999999999999986 5789999999999999999999999999883 23588
Q ss_pred EEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCC
Q psy13252 210 RSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNK 288 (558)
Q Consensus 210 r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~ 288 (558)
+.|+||||++|||+++|.++..+++|++.|+.......+||||||+||+ |||+|++++++++++.. .....
T Consensus 156 ~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~-------~~~v~- 227 (258)
T smart00194 156 RTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEA-------GKEVD- 227 (258)
T ss_pred EEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHH-------cCCCC-
Confidence 9999999999999999999999999999999875545789999999999 99999887776544422 11111
Q ss_pred chhhHHHHHHHHhhcccccccccceeeeeeeeec
Q psy13252 289 KSELELEFEETHNKCSDHLIRSACQFYLIHQVNL 322 (558)
Q Consensus 289 ~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l 322 (558)
..+.++.+|++|++||++.+||.|+|.+++
T Consensus 228 ----v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l~ 257 (258)
T smart00194 228 ----IFEIVKELRSQRPGMVQTEEQYIFLYRAIL 257 (258)
T ss_pred ----HHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 256778899999999999999999999876
No 11
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=100.00 E-value=8.5e-53 Score=415.08 Aligned_cols=229 Identities=40% Similarity=0.733 Sum_probs=201.9
Q ss_pred CCCCCCCCCCCCCcceEecCCCCCCCCCceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccC
Q psy13252 78 HKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYS 157 (558)
Q Consensus 78 ~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~ 157 (558)
+||||+|++|||++||+|.... ...+||||||||+|+..+++||+||+|+++|++|||+|||+++|.+||||+...|.+
T Consensus 1 ~knR~~~~~~~d~~rV~l~~~~-~~~~~yinA~~v~~~~~~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~~e~~ 79 (231)
T cd00047 1 KKNRYKDILPYDHTRVKLKPDD-DEGSDYINASYIDGYNPPKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEKG 79 (231)
T ss_pred CCCCCCCCCCCCCCEEEccCCC-CCCCCcEEeeeEecCCCCcceEEcCCCChhhHHHHHHHHHhcCCCEEEEccccccCC
Confidence 5899999999999999998643 246799999999999988999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCcceeceEEEEEeeeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHH
Q psy13252 158 KIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIK 237 (558)
Q Consensus 158 ~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~ 237 (558)
+.+|.+|||.+. +...||.|+|++.+++...+++.|+|+|+.. ++..++.|+||||++|||+++|.++..+++|++
T Consensus 80 ~~~~~~Ywp~~~-~~~~~g~~~V~~~~~~~~~~~~~~~l~i~~~---~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~ 155 (231)
T cd00047 80 REKCAQYWPEEE-GSLTYGDITVTLVSEEKLDDYTVRTLKLSNT---GTGETRTVTHFQYTGWPDHGVPESPDSLLDLLR 155 (231)
T ss_pred CccCccCCCCCC-CCeEecCEEEEEEEEEEcCCEEEEEEEEEEC---CCCCceEEEEEeECCCCCCCccCChHHHHHHHH
Confidence 999999999987 6889999999999999999999999999983 246899999999999999999999999999999
Q ss_pred HHHHHcC-CCCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceee
Q psy13252 238 HVNEAYS-LEKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFY 315 (558)
Q Consensus 238 ~v~~~~~-~~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~ 315 (558)
.|++... ...+||+|||++|+ |||+|++++++++++... ... -..+..+.+|++|+++|++.+||.
T Consensus 156 ~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~-------~~~-----~~~~~v~~iR~~R~~~v~~~~Qy~ 223 (231)
T cd00047 156 KVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAE-------GVV-----DIFQTVKELRSQRPGMVQTEEQYI 223 (231)
T ss_pred HHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhc-------CCC-----CHHHHHHHHHhccccccCCHHHHH
Confidence 9987643 34689999999999 999998877766554331 111 125667888999999999999999
Q ss_pred eeeeeecc
Q psy13252 316 LIHQVNLA 323 (558)
Q Consensus 316 fi~~~~l~ 323 (558)
|+|.++++
T Consensus 224 f~~~~l~~ 231 (231)
T cd00047 224 FLYRAILE 231 (231)
T ss_pred HHHHHHhC
Confidence 99998863
No 12
>KOG0793|consensus
Probab=100.00 E-value=1e-53 Score=445.02 Aligned_cols=278 Identities=27% Similarity=0.501 Sum_probs=237.4
Q ss_pred cCHHhHHHHHHHHhcCCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCceeee
Q psy13252 31 ITRADIVMEYDERHYDSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINAN 110 (558)
Q Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINAs 110 (558)
|+...+.-.|.+-+-.++..+++|++.|+.....+.++..++.++|..|||...++||||+||.|.......++||||||
T Consensus 714 ISTGHmiLsymedhLrnk~rlekeWealc~YqaEpn~r~~aq~e~~a~kNR~~a~LpyDhsrV~l~~~~s~s~~dYiNAS 793 (1004)
T KOG0793|consen 714 ISTGHMILSYMEDHLRNKNRLEKEWEALCAYQAEPNSRFVAQREENAPKNRSLAVLPYDHSRVLLKAENSHSHSDYINAS 793 (1004)
T ss_pred cccchhHHHHHHHHhhCchHHHHHHHHHHHhhcCcchhhhhcccccccccCCCCccccccceeeeccccCcccccccccc
Confidence 66667776666666666677999999997555555667788899999999999999999999999987777889999999
Q ss_pred eecCCcc-ccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeee-
Q psy13252 111 FVLGYKE-LKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKF- 188 (558)
Q Consensus 111 ~I~g~~~-~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~- 188 (558)
+|...+. ...|||||||+++|+.|||+||||+.|.+|||||.+.|.|...|..|||++ ++..|+-|.|.++++.+-
T Consensus 794 ~I~DhDPR~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPde--GselyhiyEV~LVSEHIWc 871 (1004)
T KOG0793|consen 794 PIMDHDPRNPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDE--GSELYHIYEVNLVSEHIWC 871 (1004)
T ss_pred ccccCCCCccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCC--CcceeeeEEeeeehhhhhh
Confidence 9966653 358999999999999999999999999999999999999999999999996 478999999999999874
Q ss_pred CceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhccee
Q psy13252 189 GEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETE 267 (558)
Q Consensus 189 ~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~ 267 (558)
.||.+|.|.+.+.. .+++|+|+||||.+||+.|+|.++.++|+|.++|++.......|||||||+|. |||+++.++
T Consensus 872 eDfLVRSFYLKNlq---tseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliD 948 (1004)
T KOG0793|consen 872 EDFLVRSFYLKNLQ---TSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILID 948 (1004)
T ss_pred hhHHHHHHHHhhcc---cccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHH
Confidence 68999999998854 56899999999999999999999999999999999998777889999999998 999997766
Q ss_pred eehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeeccc
Q psy13252 268 IRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLAS 324 (558)
Q Consensus 268 i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~ 324 (558)
+.+..|..-+++ ++ +.....-+|.||+|||+|.+||.|.+.++.+.
T Consensus 949 mvl~Rm~kGake---ID--------IaATlEHlRDQR~GmVaTkdQFef~l~aVAeE 994 (1004)
T KOG0793|consen 949 MVLNRMAKGAKE---ID--------IAATLEHLRDQRPGMVATKDQFEFALTAVAEE 994 (1004)
T ss_pred HHHHHHhccchh---hh--------HHHHHHHHhhcCCcceeehhhhHHHHHHHHHH
Confidence 655444332221 11 13345668899999999999999999887653
No 13
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-53 Score=400.25 Aligned_cols=241 Identities=27% Similarity=0.512 Sum_probs=191.6
Q ss_pred hhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCc--cE
Q psy13252 69 KASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHL--EI 146 (558)
Q Consensus 69 ~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v--~~ 146 (558)
..+..+.|..||||.||+||++|||.|...+ ...||||||||+...+ +|||||||+++|++|||.|||+... .+
T Consensus 46 ~~sls~~~~~rNRYsnIvPYe~tRV~Lk~~k--~~~DYINAS~ik~~~~--~yIAtQgP~~~t~ddFW~mvw~n~~~~gv 121 (302)
T COG5599 46 DTSLSSTNYARNRYSNIVPYEHTRVHLKYGK--SINDYINASYIKTPRG--KYIATQGPKPETIDDFWKMVWHNVPNNGV 121 (302)
T ss_pred ccccCccccccccccccccccCceeeccCCC--chhhcccceeeecCCC--ceEEecCCCCchHHHHHHHHHhcCCCceE
Confidence 4456678999999999999999999998752 4679999999998874 5999999999999999999999988 99
Q ss_pred EEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeeeC--ceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCC
Q psy13252 147 VIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFG--EYILRELKLVRTASGKESEERSIFQYHYLAWKDFQ 224 (558)
Q Consensus 147 IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~~--~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~g 224 (558)
||||+++.|.+++||.+|||...+....+|...+.-++.+... -+..+.|+++.. ..+.+.|+||+|.+|+|.+
T Consensus 122 IVmLt~l~E~~rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~----~~~~k~Ihhf~y~nW~D~~ 197 (302)
T COG5599 122 IVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSI----NGPPKKIHHFQYINWVDFN 197 (302)
T ss_pred EEEecChHHHhHHHHhhhCCCCcCcceeeeeEEEEEecccccccceeeeeecccccC----CCCccEEEEEEecCccccC
Confidence 9999999999999999999988888888997776666555543 466788888763 2578999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCC-CCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHH-hhccCCCCchhhHHHHHHHHh
Q psy13252 225 APENPSGLLKFIKHVNEAYSL-EKGPILVHCRALV-EVVQFGETEIRATDLKSTLETL-KRVNDGNKKSELELEFEETHN 301 (558)
Q Consensus 225 vP~~~~~ll~~i~~v~~~~~~-~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l-~~~~~~~~~~~~~~e~~~~~r 301 (558)
+| +...+.++++.+.. ++ ..+|++||||||| |||||++++ .|.+..+.. ..........++.++++.-+|
T Consensus 198 ~p-~i~sl~~~~~sl~~--sp~~t~piiVHCSAGvGRTGTFIalD----~ll~~~~~~~~~t~~~~~t~D~if~iV~~LR 270 (302)
T COG5599 198 VP-DIRSLTEVIHSLND--SPVRTGPIIVHCSAGVGRTGTFIALD----ILLRMPNDTLNHTDTWEDTQDLIFQIVLSLR 270 (302)
T ss_pred Cc-CHHHHHHHHHHhhc--CcCCCCCEEEEeccCCCCcceeeeHH----HHHhccccccCCCchhhhhhhHHHHHHHHHH
Confidence 99 44444444444432 33 6799999999999 999995544 443322211 111111223467788889999
Q ss_pred hcccccccccceeeeeeeeeccc
Q psy13252 302 KCSDHLIRSACQFYLIHQVNLAS 324 (558)
Q Consensus 302 ~~R~~~Vqt~~Qy~fi~~~~l~~ 324 (558)
+||..|||+.+||.|||.++++.
T Consensus 271 sQRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 271 SQRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999997643
No 14
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=100.00 E-value=3.2e-50 Score=396.66 Aligned_cols=231 Identities=37% Similarity=0.666 Sum_probs=198.3
Q ss_pred ccCCCCCCCCCCCCCcceEecCCCCCCCCCceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccc
Q psy13252 76 NQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEE 155 (558)
Q Consensus 76 N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E 155 (558)
|.+|||+.||+|||++||+|...++ .+||||||||+++...++||+||+|+++|++|||+|||+++|.+||||++..|
T Consensus 1 n~~knR~~~~~~~d~~rv~l~~~~~--~~~yi~A~~v~~~~~~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~~~e 78 (235)
T PF00102_consen 1 NREKNRSPDILPYDDSRVKLNPSPG--DSDYINASYVDGYKNGKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCSFDE 78 (235)
T ss_dssp GGGGSSSTTS-BBTTTEEETTTTTT--STTEESEEEEEESSSTEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESBSEE
T ss_pred CCccCCCCCCCcCcceEEEecCCCC--ccchhhhhhhccccchhhheeecccccccccceehheeeccccceeccccccc
Confidence 7899999999999999999954332 35799999999998889999999999999999999999999999999999999
Q ss_pred cCccccccccCCCCCCcceeceEEEEEe-eee-eeCceEEEEEEEEEecCCCCC-ceEEEEEEEEcCcCCCCCCCChHHH
Q psy13252 156 YSKIKCAKYWPEQEEGDKTYGDFIVGLV-NEK-KFGEYILRELKLVRTASGKES-EERSIFQYHYLAWKDFQAPENPSGL 232 (558)
Q Consensus 156 ~~~~kc~~YwP~~~~~~~~~g~~~V~~~-~~~-~~~~~~~r~l~v~~~~~g~~~-~~r~V~~~~y~~Wpd~gvP~~~~~l 232 (558)
.+..+|.+|||.+.++...||+|+|++. +.. ...++++|+|.|+.. +.. .++.+.||||..||++++|.+...+
T Consensus 79 ~~~~~~~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~v~~~~~~~W~~~~~P~~~~~~ 155 (235)
T PF00102_consen 79 SGDEKCDQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVRKLEVTNG---KSKKKSRTVTHFHYTNWPDDGVPPSPESF 155 (235)
T ss_dssp TTEESS--TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEEEEEEEET---TTTEEEEEEEEEEEESSSSSSSGSSSHHH
T ss_pred ccccccccccccccccccccccccccccccccccccceEEeecccccc---ccccccccccceeeeeccccccccccchh
Confidence 9999999999988888999999999999 665 678999999999983 233 3799999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhccccccccc
Q psy13252 233 LKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSA 311 (558)
Q Consensus 233 l~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~ 311 (558)
++|++.+++......+||+|||++|+ |||+|++++++++++.. .... -..+..+.+|++|+++|++.
T Consensus 156 ~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~-------~~~~-----~v~~~~~~lR~~R~~~i~~~ 223 (235)
T PF00102_consen 156 LDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKK-------EGEV-----DVFEIVKKLRQQRPGAIQSP 223 (235)
T ss_dssp HHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHH-------HSEE-----CHHHHHHHHHTTSTTSSSSH
T ss_pred hhhhhhccccccCCccceEeecccccccccccccchhhcccccc-------ccch-----hhHHHHHHHHhhCCCccCCH
Confidence 99999999987667899999999999 99999876665544422 1111 12567788999999999999
Q ss_pred ceeeeeeeeecc
Q psy13252 312 CQFYLIHQVNLA 323 (558)
Q Consensus 312 ~Qy~fi~~~~l~ 323 (558)
.||.|+|.+++|
T Consensus 224 ~qy~f~~~~~~e 235 (235)
T PF00102_consen 224 EQYRFCYMAVLE 235 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 15
>KOG4228|consensus
Probab=100.00 E-value=4.6e-50 Score=442.60 Aligned_cols=279 Identities=30% Similarity=0.531 Sum_probs=236.3
Q ss_pred CCCCCcCHHhHHHHHHHHhc----CCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCC
Q psy13252 26 PDMAPITRADIVMEYDERHY----DSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGV 101 (558)
Q Consensus 26 ~~~~pi~~~~~~~~~~~~~~----~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~ 101 (558)
-..+.|++.+|..++..+.+ .++.+++.||+.|...........++..++|+.|||+.+|+|||++||.|.+..|.
T Consensus 799 ~G~T~i~~~~~~~~~~~l~~~~p~~~~t~le~EF~~L~~~~~~~~~~~~~~l~~N~~KNR~~~i~P~d~~rv~L~~~~G~ 878 (1087)
T KOG4228|consen 799 CGDTEVPASTLAPYSQKLKRIDPPENKTGLEEEFKTLNSCKPRTRMMICGNLPENKSKNRQVNILPYDRNRVILIPTHGE 878 (1087)
T ss_pred cCCccccHHHHHHHHHHhccCCCCCCCcchHHHHHHHhhccccchhhhccccchhcccccccccCCchhcccceeccCCC
Confidence 45678999999999999988 24678999999995443333334558999999999999999999999999999886
Q ss_pred CCCCceeeeeecCCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEE
Q psy13252 102 PGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVG 181 (558)
Q Consensus 102 ~~~dYINAs~I~g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~ 181 (558)
++||||||+||||..+..|||||+||.+|++|||||||+++|.+||||+.+.+. .+|.+|||.+ +...||.|.|.
T Consensus 879 -~sdYINAs~idgy~~~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVmL~~l~~~--~~C~qyw~~~--g~~~yg~i~Ve 953 (1087)
T KOG4228|consen 879 -SSDYINASFIDGYRQPKAFIVTQGPLAETVEDFWRMIWDQNVTSIVMLTELKHP--EKCPQYWPPE--GSQRYGPIEVE 953 (1087)
T ss_pred -cccccchhhhcccCCcceEEEecCCcccchHHHHHHhhccceeEEEEecccCcc--cccccccCCc--CceecCcEEEE
Confidence 889999999999999999999999999999999999999999999999999876 8999999984 47899999999
Q ss_pred EeeeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHH-HHHHHHHHHHHcCC-CCCCEEEEcchhh-
Q psy13252 182 LVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSG-LLKFIKHVNEAYSL-EKGPILVHCRALV- 258 (558)
Q Consensus 182 ~~~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~-ll~~i~~v~~~~~~-~~~PIvVHCsaGv- 258 (558)
.........++.|.|.|++.. ....|+|.||||++||..+.|+.... +..+...+++.+.. ..+|++|||++|+
T Consensus 954 ~~~~~~~~~~t~r~f~i~n~~---~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~ 1030 (1087)
T KOG4228|consen 954 DMNEHINPQYTAREFGVTNER---EKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVG 1030 (1087)
T ss_pred ecccccchhhhhhhheeeecc---ccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCc
Confidence 999999999999999999854 45789999999999999888765554 44455555544443 3899999999999
Q ss_pred HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeeccc
Q psy13252 259 EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLAS 324 (558)
Q Consensus 259 rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~ 324 (558)
|+|+||++.+++ ++++.....++ .+.+|.+|.+|++||++.+||.|||++++++
T Consensus 1031 rsg~f~ai~~l~-------e~~~~e~~vDV-----fq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y 1084 (1087)
T KOG4228|consen 1031 RTGTFCAISILL-------ERMRKEGVVDV-----FQTVKTLRFQRPGMVDTSDQYQFCYDVALEY 1084 (1087)
T ss_pred ceeehHHHHHHH-------HHHhhcCceee-----ehhhhhhhhcCccccCcHHHHHHHHHHHHHh
Confidence 999998766554 33333332222 5678999999999999999999999999875
No 16
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=100.00 E-value=3.2e-46 Score=386.60 Aligned_cols=271 Identities=14% Similarity=0.181 Sum_probs=199.3
Q ss_pred CCCCcCCCCCCC------------CcCHHhHHHHHHHHhc--CCchhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCC
Q psy13252 18 HIPVASNPPDMA------------PITRADIVMEYDERHY--DSDYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYP 83 (558)
Q Consensus 18 ~~~~~~~~~~~~------------pi~~~~~~~~~~~~~~--~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ 83 (558)
..||--.|+++. .-+.++|.+...++|. ..-..++.|.+.+....+.+.+... -.--..+=--+
T Consensus 228 ~~~v~g~~~~qwgt~gg~~~~~v~~as~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ag~p~~~~~~~--~~~~~~~~~~~ 305 (535)
T PRK15375 228 NIQVGVARFSQWGTCGGEVERWVDKASTHELTQAVKKIHVIAKELKNVTAELEKIEAGAPMPQTMSG--PTLGLARFAVS 305 (535)
T ss_pred hccccceeHHHhhccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCC--ccchhhHHHhc
Confidence 456666666643 1244555555555553 1123366777766322211111110 00111222346
Q ss_pred CCCCCCCcceEecCCCCCCCCCceeeeeecCCccccceEEecCCCC--CchhhhhhhhhcCCccEEEEcCCccccCcccc
Q psy13252 84 DIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPME--HTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKC 161 (558)
Q Consensus 84 ni~p~D~tRV~L~~~~~~~~~dYINAs~I~g~~~~~~yIatQ~Pl~--~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc 161 (558)
+|+|+|||||+|.. ++|||||||+ +..++.+|++|+|+. +|++|||+||||++|.+|||||+..|.++.+|
T Consensus 306 ~I~~~~~TrV~ls~------g~yI~ANyI~-~~~k~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC 378 (535)
T PRK15375 306 SIPINQQTQVKLSD------GMPVPVNTLT-FDGKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQL 378 (535)
T ss_pred ccCccccceEEcCC------CCccccceee-ecCccceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCccccc
Confidence 99999999999963 6899999999 888889999999975 89999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeceEEEEEeeeeee-CceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHH
Q psy13252 162 AKYWPEQEEGDKTYGDFIVGLVNEKKF-GEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVN 240 (558)
Q Consensus 162 ~~YwP~~~~~~~~~g~~~V~~~~~~~~-~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~ 240 (558)
.+||+ ++..||+|+|++.+++.. .++.+|.+.+.... .+..+.|.||||++|||||+|+++..+++|++.|+
T Consensus 379 ~pYW~----~s~tYGdItVts~seesls~g~iIR~f~L~Ik~---~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr 451 (535)
T PRK15375 379 PPYFR----GSYTFGEVHTNSQKVSSASQGEAIDQYNMQLSC---GEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVK 451 (535)
T ss_pred CccCC----CcceeccEEEEEEEEEeccCCceEEEEEEEEec---CCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHH
Confidence 99996 367899999999988775 56888888765521 23456899999999999999988888999999998
Q ss_pred HHcCC--------CCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccc-cccc
Q psy13252 241 EAYSL--------EKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDH-LIRS 310 (558)
Q Consensus 241 ~~~~~--------~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~-~Vqt 310 (558)
..... +.+++|||||||+ |||+||++.+ +..... . -.++++..+|.+|++ |||+
T Consensus 452 ~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~l-----------lk~~~~----~-sle~IV~dlR~qRng~MVQt 515 (535)
T PRK15375 452 NSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV-----------LKDNPH----S-NLEQVRADFRNSRNNRMLED 515 (535)
T ss_pred HhhhcccccccccCCCCceEEcCCCCchHHHHHHHHH-----------Hhcccc----C-CHHHHHHHHHhcCCcccccc
Confidence 75321 2234489999999 9999987542 111111 1 136788899999998 9999
Q ss_pred cceeeeeeee
Q psy13252 311 ACQFYLIHQV 320 (558)
Q Consensus 311 ~~Qy~fi~~~ 320 (558)
.+||.+++..
T Consensus 516 ~eQy~~l~~~ 525 (535)
T PRK15375 516 ASQFVQLKAM 525 (535)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 17
>KOG0789|consensus
Probab=100.00 E-value=1.8e-43 Score=378.29 Aligned_cols=261 Identities=26% Similarity=0.368 Sum_probs=192.6
Q ss_pred chhHHHHHHhhhhCCCCCCchhhhhhhhccCCCCCCCCCCCCCcceEecCCCCCCCCCceeeeeecCCccccceEEecCC
Q psy13252 48 DYGFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGP 127 (558)
Q Consensus 48 ~~~~~~Ef~~l~~~~~~~~~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~~~~~dYINAs~I~g~~~~~~yIatQ~P 127 (558)
..++..+|.... .... ....+.....|..||||.||.|||++||+|.... ..||||||||+++...+.||+||||
T Consensus 101 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~kNr~~dv~~~d~~rV~l~~~~---~~dyI~A~~v~~~~~~~~~I~tQ~P 175 (415)
T KOG0789|consen 101 IVEMFKQFRSNK-VEKE-SSHLCDAFLKNMDKNRYSDVQCLDHTRVKLKPPQ---DKDYIHASKIYFPKGPRTAILTQAP 175 (415)
T ss_pred cHHHHHHHHHhh-ccCC-cchhhhhhhccccccccCCcCcccCCeeecCCCC---CcccchhhccCCcCCCcCceecCCC
Confidence 344555555552 1111 1123556778999999999999999999997532 5799999999998633899999999
Q ss_pred CCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeee---eee--CceEEEEEEEEEec
Q psy13252 128 MEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNE---KKF--GEYILRELKLVRTA 202 (558)
Q Consensus 128 l~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~---~~~--~~~~~r~l~v~~~~ 202 (558)
++.|.+|||+|||++++.+|||||+..|.|+.+|.+|||...+....||.+..++... ... .......+.+....
T Consensus 176 l~~t~~dFW~mv~~~k~~~Ivml~~~~E~~~~kc~~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (415)
T KOG0789|consen 176 LSKTTEDFWRMVFEEKVESVVLLCSDEELGAAECASYFPSKRGVKLTFLEFGKKFVENRKVEMKQQDQTSTVGLLLLVLP 255 (415)
T ss_pred CcccHHHHHHHHHHcCCCEEEEecchhhccHHHHhhcCcccCCCeeeecccceeEEEeeeeecccccccceeeEEEeecC
Confidence 9999899999999999999999999999999999999999875456777765444433 221 12222333333322
Q ss_pred CCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHh
Q psy13252 203 SGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLK 281 (558)
Q Consensus 203 ~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~ 281 (558)
.+ ...++.|.|+||++|||+|+|.+...++.+++.......+..+|++||||||+ |||+|+++++++.++ .
T Consensus 256 ~~-~~~~~~v~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~-------~ 327 (415)
T KOG0789|consen 256 EG-LEISSSVVHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIEL-------Q 327 (415)
T ss_pred CC-ccccceEEEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHH-------h
Confidence 22 34457999999999999999999999999997611112235689999999999 999998766443222 1
Q ss_pred hccCCCCchhhHHHHHHHHhhcccccccccceeeeeeeeecccC
Q psy13252 282 RVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLASG 325 (558)
Q Consensus 282 ~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~~ 325 (558)
... ......++...+|.||.++||+..||.|+|.+++++.
T Consensus 328 ~~~----~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~ 367 (415)
T KOG0789|consen 328 GPE----GEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYI 367 (415)
T ss_pred cCC----CCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 111 1122356667789999999999999999999998764
No 18
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.97 E-value=2.8e-31 Score=270.90 Aligned_cols=130 Identities=25% Similarity=0.401 Sum_probs=123.1
Q ss_pred Cccc-HHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCCCCCCCCCCCCeeeecCCCCCCCccccccc
Q psy13252 428 MEHT-VHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFI 506 (558)
Q Consensus 428 ~~~t-~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~~~~~~~YInAs~i 506 (558)
...+ +.||++.+.+.++..+|.+++..+......+++..+..++|..||||.|++|||++||+|+..++.+||||||||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~E~~~i~~~~~~~~~~~~~~~~N~~KNRy~~i~~~D~tRV~L~~~~~~~dYINAsyI 86 (303)
T PHA02742 7 KKNSFAKNCEQLIEESNLAEILKEEHEHIMQEIVAFSCNESLELKNMKKCRYPDAPCFDRNRVILKIEDGGDDFINASYV 86 (303)
T ss_pred cccCcHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhccChhhhhcCCCCCCCCCCCCEEEeCCCCCCCCcEEEeee
Confidence 3457 899999999999999999999999988888999999999999999999999999999999987777899999999
Q ss_pred cccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccCCccccCC
Q psy13252 507 EAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNKFRYK 558 (558)
Q Consensus 507 ~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~~~~~~y~ 558 (558)
+|++.+++|||||+| +++|+.|||+|||++++.+|||||+..|+++.+|++
T Consensus 87 ~g~~~~~~fIatQ~P-l~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~ 137 (303)
T PHA02742 87 DGHNAKGRFICTQAP-LEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYP 137 (303)
T ss_pred cCCCCCCeEEEECCC-CcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccc
Confidence 999988999999999 999999999999999999999999999999999875
No 19
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.96 E-value=1.6e-30 Score=266.06 Aligned_cols=130 Identities=29% Similarity=0.414 Sum_probs=121.3
Q ss_pred CcccHHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCCCCCCCCCCCCeeeecCCCC-CCCccccccc
Q psy13252 428 MEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKD-YSNYINASFI 506 (558)
Q Consensus 428 ~~~t~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~~~~-~~~YInAs~i 506 (558)
...++.||++.+.+.++..+|..++..+..++..+++..+..++|..||||.|++|||++||+|.+..+ .+||||||||
T Consensus 7 ~~~~~~~f~~~~~~~~~~~~i~~E~~~i~~~~~~~~~~~~~~~~N~~kNRy~di~p~D~sRV~L~~~~~~~~dYINAsyV 86 (312)
T PHA02747 7 AECRAIDFLKRRNQLNCFGIIRDEHHQIILKPFDGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGGGSTSDYIHANWI 86 (312)
T ss_pred cccCHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhhhhhCchhhccCCCCCCCCCCCCEeEecCCCCCCCCcEEeeee
Confidence 456899999999999999999999999988888888888999999999999999999999999987544 5799999999
Q ss_pred cccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcc-cCCccccCC
Q psy13252 507 EAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGL-EETNKFRYK 558 (558)
Q Consensus 507 ~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~-e~~~~~~y~ 558 (558)
+|+..+++|||||+| +++|+.|||+||||+++.+|||||... |+++++|++
T Consensus 87 ~g~~~~~~yIaTQ~P-l~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~ 138 (312)
T PHA02747 87 DGFEDDKKFIATQGP-FAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQ 138 (312)
T ss_pred cCCCCCCeEEEeCCC-cchhHHHHHHHHHhccCCEEEEcccccccCCcccccc
Confidence 999999999999999 999999999999999999999999999 888888874
No 20
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.96 E-value=5.3e-30 Score=263.35 Aligned_cols=129 Identities=26% Similarity=0.433 Sum_probs=118.5
Q ss_pred CcccHHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCCCCCCCCCCCCeeeecCC-------------
Q psy13252 428 MEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPA------------- 494 (558)
Q Consensus 428 ~~~t~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~~------------- 494 (558)
...++.|||+.+.+.++..+|.+++..+...+..+++..+..++|..||||.||+|||++||+|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~t~~~~~~~~N~~KNRy~di~p~D~sRV~L~~~~~~~~~~~~~~~~ 86 (323)
T PHA02746 7 EIFNAFDFFDKTNHAKFCEFVLLEHAEVMDIPIRGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDG 86 (323)
T ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCcchhhccChhhccccCCCCCCCCcCCEEEecCCCCccccccccccc
Confidence 3458999999999999999999999999999999999999999999999999999999999999853
Q ss_pred --------CCCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccCCccccCC
Q psy13252 495 --------KDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNKFRYK 558 (558)
Q Consensus 495 --------~~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~~~~~~y~ 558 (558)
++.+||||||||+|+..+++|||||+| +++|+.|||+||||+++.+|||||+.. ++..+|++
T Consensus 87 ~~~~~~~~~~~~dYINAsyV~g~~~~~~fIaTQ~P-l~~T~~dFW~MIwe~~v~vIVMLt~~~-e~~~kc~~ 156 (323)
T PHA02746 87 KKIEVTSEDNAENYIHANFVDGFKEANKFICAQGP-KEDTSEDFFKLISEHESQVIVSLTDID-DDDEKCFE 156 (323)
T ss_pred cccccccCCCCCCeEEEecccCCCCCCeEEEeCCC-ChhhHHHHHHHHHhhCCCEEEEecccc-cCCccCCC
Confidence 234799999999999988999999999 999999999999999999999999975 45667764
No 21
>PHA02738 hypothetical protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=260.59 Aligned_cols=131 Identities=22% Similarity=0.393 Sum_probs=118.4
Q ss_pred CCCCcccHHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCCCCCCCCCCCCeeeecCCCCCCCccccc
Q psy13252 425 DPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINAS 504 (558)
Q Consensus 425 ~P~~~~t~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~~~~~~~YInAs 504 (558)
+.+...+..||++++.+.++..+|..++..+......+++..+. .|..||||.|++|||++||.|+...+.+||||||
T Consensus 4 ~~~~~~~~~~fl~~~~~~~~~~~i~~E~~~i~~~~~~~t~~~~~--~N~~kNR~~~v~~~d~sRV~L~~~~~~~dYINAs 81 (320)
T PHA02738 4 CKFRELKYAEFLALMEKSDCEEVITREHQKVISEKVDGTFNAEK--KNRKLNRYLDAVCFDHSRVILPAERNRGDYINAN 81 (320)
T ss_pred cccccCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCcchhHHH--HhhhhCCCCCcCCCcCCEEEeCCCCCCCCceEeE
Confidence 33455689999999999999999999999887777777766543 4999999999999999999998777778999999
Q ss_pred cccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccCCccccCC
Q psy13252 505 FIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNKFRYK 558 (558)
Q Consensus 505 ~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~~~~~~y~ 558 (558)
||+|+..+++|||||+| +++|++|||+|||++++.+|||||+..|.++.+|++
T Consensus 82 yVdg~~~~~kfI~TQ~P-l~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~ 134 (320)
T PHA02738 82 YVDGFEYKKKFICGQAP-TRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFP 134 (320)
T ss_pred EecCCCCCceeEEecCC-ChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccc
Confidence 99999999999999999 999999999999999999999999999999888864
No 22
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.95 E-value=4.6e-29 Score=252.94 Aligned_cols=120 Identities=20% Similarity=0.344 Sum_probs=111.5
Q ss_pred CcccHHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCC--CCCCCCCCCCeeeecCCCCCCCcccccc
Q psy13252 428 MEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNR--DESIIPYDRNRVILSPAKDYSNYINASF 505 (558)
Q Consensus 428 ~~~t~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr--~~~i~~~d~~rV~L~~~~~~~~YInAs~ 505 (558)
...++.||++++.+.++..++..++..+......+++..+..++|..||| |.+++||||+||+|.+ +++||||||
T Consensus 7 ~~~~~~~f~~~~~~~~~~~~i~~E~~~i~~~~~~~~~~~~~~~~n~~knr~r~~~i~~~D~sRV~L~~---~~~YINAny 83 (298)
T PHA02740 7 VDINGMDFINFINKPDLLSCIIKEYRAIVPEHEDEANKACAQAENKAKDENLALHITRLLHRRIKLFN---DEKVLDARF 83 (298)
T ss_pred cccCHHHHHHHHhCCCHHHHHHHHHHHHhccCccchhhhhhchhhhcccccccCCcCCccCceEEecC---CCCcEEEEE
Confidence 45689999999999999999999999999888889999999999999996 5899999999999964 348999999
Q ss_pred ccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccC
Q psy13252 506 IEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551 (558)
Q Consensus 506 i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~ 551 (558)
|+|++.+++|||||+| +++|+.|||+||||+++.+|||||...|.
T Consensus 84 VdG~~~~~~fIaTQ~P-l~~T~~dFW~MVwe~~~~iIVMLt~~~e~ 128 (298)
T PHA02740 84 VDGYDFEQKFICIINL-CEDACDKFLQALSDNKVQIIVLISRHADK 128 (298)
T ss_pred ecCCCCCCcEEEecCC-chhhHHHHHHHHHhcCCCEEEEccccccc
Confidence 9999999999999999 99999999999999999999999998773
No 23
>KOG0790|consensus
Probab=99.92 E-value=1.8e-25 Score=224.78 Aligned_cols=226 Identities=26% Similarity=0.405 Sum_probs=144.1
Q ss_pred eeceEEEEEeeeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcC----CCCCCCChHHHHHHHHHHHHHcCCCCCC
Q psy13252 174 TYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWK----DFQAPENPSGLLKFIKHVNEAYSLEKGP 249 (558)
Q Consensus 174 ~~g~~~V~~~~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wp----d~gvP~~~~~ll~~i~~v~~~~~~~~~P 249 (558)
..|.|-|+- +....+++++.... -....+ ....-.|+|+-. -|. |-|--+...++-++++.-+ +.|
T Consensus 131 k~gsfLvRe-Sqs~PGdfVlSvrT-dd~~~~-~~~~~kVtHvmI-~~q~~kydVGgge~F~sltdLidhyk------knp 200 (600)
T KOG0790|consen 131 KHGSFLVRE-SQSHPGDFVLSVRT-DDKKES-NDSKLKVTHVMI-RCQEGKYDVGGGERFDSLTDLVEHYK------KNP 200 (600)
T ss_pred CCccEEEec-cccCCCceEEEEEc-CCcccC-CCCccceEEEEE-EecccccccCCccccchHHHHHHHhc------cCc
Confidence 346666643 23344667766554 221111 223346666553 343 3344456667777776654 368
Q ss_pred EEEEcchhh--HHhhhcceeeehHHHHHHHHHHhhccCC--CCchhhHHHHHHHHhhcccccccccceeeeeeeeecccC
Q psy13252 250 ILVHCRALV--EVVQFGETEIRATDLKSTLETLKRVNDG--NKKSELELEFEETHNKCSDHLIRSACQFYLIHQVNLASG 325 (558)
Q Consensus 250 IvVHCsaGv--rtg~~~~~~i~i~~l~~~l~~l~~~~~~--~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l~~~ 325 (558)
||=-|++-+ |- -+-+|.|-...+.+.++.|++.... ..+.++-+||..|-.
T Consensus 201 mvEt~gtvv~Lrq-P~naTrI~Aa~i~~Rve~l~k~~e~~d~~k~GfwEEFesLqq------------------------ 255 (600)
T KOG0790|consen 201 MVETLGTVVYLRQ-PLNATRINAADIENRVEELNKKQESEDTAKAGFWEEFESLQQ------------------------ 255 (600)
T ss_pred hhhhcceeEEeec-cccccchhhhhHHHHHHHHhccccchhhhhcchhHHHHHhhh------------------------
Confidence 887777666 32 2336666666677777776654222 222334444433210
Q ss_pred CchhhHHhhhhhhHhcccccccccchhhhhhhhhhhhhhcccccccccccccccCCCCCCCCCCCCceEEecC---CCCC
Q psy13252 326 PDQVYVLRLTQAKEENKSTTNAKSEDLTVLGVRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP---AKDY 402 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~knr~~~ilp~d~~rv~l~~---~~~~ 402 (558)
+......+...|..++|+.||||.|||||||+||+|.. +..+
T Consensus 256 -----------------------------------~~~~~~~sr~EG~r~eN~~KNRYkNIlPfDHtRViL~d~~~n~pg 300 (600)
T KOG0790|consen 256 -----------------------------------QEVKNLHSRLEGQRPENKGKNRYKNILPFDHTRVILQDRDPNIPG 300 (600)
T ss_pred -----------------------------------hhhHhhhhhhccccchhhccccccccCcccceeeEeecCCCCCcc
Confidence 00111234457889999999999999999999999996 5568
Q ss_pred CCCcccccccccCCCCceeeeCCCCCcccHHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCCCCCCC
Q psy13252 403 SNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESII 482 (558)
Q Consensus 403 ~~yinAs~i~g~~~~~~~i~tq~P~~~~t~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr~~~i~ 482 (558)
+|||||+|| |+-+|. .
T Consensus 301 sdYINAnyi--------~~~~q~----------------------------------~---------------------- 316 (600)
T KOG0790|consen 301 SDYINANYI--------MIEFQR----------------------------------L---------------------- 316 (600)
T ss_pred chhcccchh--------hhhhhh----------------------------------c----------------------
Confidence 999999999 111110 0
Q ss_pred CCCCCeeeecCCCCCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccCCccccC
Q psy13252 483 PYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNKFRY 557 (558)
Q Consensus 483 ~~d~~rV~L~~~~~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~~~~~~y 557 (558)
|.+. ..++.||||||+ |.+|+.|||+||||+|+++|||.+...|.|+.||-
T Consensus 317 ~~~~-----------------------~~kKsyIAtQGC-L~nTVnDFW~MvwQENsrVIVMtTkE~ERgK~KC~ 367 (600)
T KOG0790|consen 317 CNNS-----------------------KPKKSYIATQGC-LQNTVNDFWRMVWQENSRVIVMTTKEVERGKSKCV 367 (600)
T ss_pred cCcc-----------------------ccccceeehhhH-HHHHHHHHHHHHHhccceEEEEehhhhhccccccc
Confidence 0000 011579999999 99999999999999999999999999999999984
No 24
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.91 E-value=8.6e-25 Score=219.17 Aligned_cols=96 Identities=42% Similarity=0.695 Sum_probs=89.1
Q ss_pred cccCccccccccCCCCCCCCCCCCCCeeeecCCC-CCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCc
Q psy13252 462 KSTTNAKSEENKDKNRDESIIPYDRNRVILSPAK-DYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTIS 540 (558)
Q Consensus 462 ~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~~~-~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~ 540 (558)
.++..+..++|..||||.+++|||++||+|.+.. +.++|||||||+|+..+++||+||+| +++|++|||+|||+++++
T Consensus 17 ~~~~~~~~~~n~~kNR~~~v~~~d~~RV~l~~~~~~~~~YInAs~v~~~~~~~~fI~tQ~P-~~~t~~dFW~mv~~~~~~ 95 (258)
T smart00194 17 ESCTVAARPENRDKNRYKDVLPYDHTRVKLTPPPGEGSDYINASYIDGPNGPKAYIATQGP-LPSTVEDFWRMVWEEKVT 95 (258)
T ss_pred ccccccCCccccccCCCCCCCCCCCCEeEccCCCCCCCCceeeeeEecCCCccceEEeCCC-chHHHHHHHHHHHhcCCC
Confidence 5777888999999999999999999999998765 56799999999999888999999999 999999999999999999
Q ss_pred EEEEccCcccCCccccCC
Q psy13252 541 TIIMLSDGLEETNKFRYK 558 (558)
Q Consensus 541 ~Ivml~~~~e~~~~~~y~ 558 (558)
+||||+...|.+..+|++
T Consensus 96 ~IVmL~~~~e~~~~~~~~ 113 (258)
T smart00194 96 TIVMLTELEEKGREKCAQ 113 (258)
T ss_pred EEEEeccceeCCEeeccc
Confidence 999999999988888764
No 25
>KOG0792|consensus
Probab=99.89 E-value=1.2e-23 Score=231.18 Aligned_cols=126 Identities=29% Similarity=0.424 Sum_probs=109.6
Q ss_pred HHHHHHhhhcccceeeeeecchhhhhcccccccCccccccccCCCCCCCCCCCCCCeeeecCCC-CCCCccccccccccC
Q psy13252 432 VHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAK-DYSNYINASFIEAYD 510 (558)
Q Consensus 432 ~~dFwrmi~~~~~~~iVml~~~~e~~ke~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~~~-~~~~YInAs~i~~~~ 510 (558)
...-.+.+.+....+.|..++..+..+.+...|.++..++|..||||.||+|||.+||.|.+.. ++.+|||||+|...-
T Consensus 854 ~dks~~~L~~~L~~g~v~~efE~i~rkkp~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~~nagYINAS~i~ipv 933 (1144)
T KOG0792|consen 854 LDKSCIILAQGLEDGMVFTEFEQIYRKKPGMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKDNNAGYINASHIEIPV 933 (1144)
T ss_pred hhhHHHHHHhhhhcCchHHHHHHHhhhCCCceeeeccccccccccccCCcCCCcCceeeeccCCCCCcccccceeeEeee
Confidence 3444556677777777777777777777999999999999999999999999999999999754 467899999998652
Q ss_pred --CCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccCCccccCC
Q psy13252 511 --NTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNKFRYK 558 (558)
Q Consensus 511 --~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~~~~~~y~ 558 (558)
....||||||| |++|+.|||+||||+++.+|||||..+|.|+.||.|
T Consensus 934 gg~e~~YIA~QGP-Lp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~Kchq 982 (1144)
T KOG0792|consen 934 GGIENRYIACQGP-LPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQ 982 (1144)
T ss_pred cceeEEEEEecCC-CcchHHHHHHHHHhcCceEEEEEeehhhcCeecccc
Confidence 34689999999 999999999999999999999999999999999975
No 26
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-22 Score=193.15 Aligned_cols=89 Identities=34% Similarity=0.538 Sum_probs=82.4
Q ss_pred cccccccCCCCCCCCCCCCCCeeeecCCCCCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhcCC--cEEEE
Q psy13252 467 AKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTI--STIIM 544 (558)
Q Consensus 467 ~~~~~n~~knr~~~i~~~d~~rV~L~~~~~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~--~~Ivm 544 (558)
...+.|..||||.||+||+++||.|....+..||||||||+... .+||||||| .++|++|||+|||+..+ .+|||
T Consensus 48 sls~~~~~rNRYsnIvPYe~tRV~Lk~~k~~~DYINAS~ik~~~--~~yIAtQgP-~~~t~ddFW~mvw~n~~~~gvIVm 124 (302)
T COG5599 48 SLSSTNYARNRYSNIVPYEHTRVHLKYGKSINDYINASYIKTPR--GKYIATQGP-KPETIDDFWKMVWHNVPNNGVIVM 124 (302)
T ss_pred ccCccccccccccccccccCceeeccCCCchhhcccceeeecCC--CceEEecCC-CCchHHHHHHHHHhcCCCceEEEE
Confidence 56778999999999999999999999876778999999999876 459999999 99999999999999988 99999
Q ss_pred ccCcccCCccccCC
Q psy13252 545 LSDGLEETNKFRYK 558 (558)
Q Consensus 545 l~~~~e~~~~~~y~ 558 (558)
|+.+.|.++++|+|
T Consensus 125 Lt~l~E~~rekc~q 138 (302)
T COG5599 125 LTSLPEYNREKCDQ 138 (302)
T ss_pred ecChHHHhHHHHhh
Confidence 99999999999976
No 27
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.86 E-value=3e-22 Score=197.44 Aligned_cols=84 Identities=42% Similarity=0.771 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCCCCeeeecCCC-CCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccCC
Q psy13252 474 DKNRDESIIPYDRNRVILSPAK-DYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEET 552 (558)
Q Consensus 474 ~knr~~~i~~~d~~rV~L~~~~-~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~~ 552 (558)
.|||+.+++|||++||+|.... +.++|||||||+|++.+++||+||+| +++|++|||+|||++++.+||||+...|.+
T Consensus 1 ~knR~~~~~~~d~~rV~l~~~~~~~~~yinA~~v~~~~~~~~fI~tQ~P-~~~t~~~FW~mv~~~~~~~IV~l~~~~e~~ 79 (231)
T cd00047 1 KKNRYKDILPYDHTRVKLKPDDDEGSDYINASYIDGYNPPKAYIATQGP-LPNTVEDFWRMVWEQKVPVIVMLTELVEKG 79 (231)
T ss_pred CCCCCCCCCCCCCCEEEccCCCCCCCCcEEeeeEecCCCCcceEEcCCC-ChhhHHHHHHHHHhcCCCEEEEccccccCC
Confidence 4899999999999999999764 56799999999999988999999999 999999999999999999999999999988
Q ss_pred ccccCC
Q psy13252 553 NKFRYK 558 (558)
Q Consensus 553 ~~~~y~ 558 (558)
..+|++
T Consensus 80 ~~~~~~ 85 (231)
T cd00047 80 REKCAQ 85 (231)
T ss_pred CccCcc
Confidence 777764
No 28
>KOG0791|consensus
Probab=99.84 E-value=6.1e-22 Score=197.39 Aligned_cols=96 Identities=39% Similarity=0.605 Sum_probs=89.0
Q ss_pred cccccCccccccccCCCCCCCCCCCCCCeeeecC--CCCCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhc
Q psy13252 460 ENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEH 537 (558)
Q Consensus 460 ~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~--~~~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~ 537 (558)
-+..+..+..++|..||||.+++|||++||+|.+ +.+.+|||||||++|...++.|||||+| +++|..+||+||||+
T Consensus 110 ~~~~~~aA~l~~n~~knr~~nilpYd~Srvkl~~~~e~~~~DYinA~~~Pg~~s~~~fIAtQGP-lp~t~~~fW~mvwq~ 188 (374)
T KOG0791|consen 110 LDQSKLAALLPLNRPKNRYTNILPYDNSRVKLSPVNEEEGSDYINASYIPGYNSPREFIATQGP-LPETRDDFWKMVWQQ 188 (374)
T ss_pred ccchhhhhhcCCCCCcCCcCCCCCcccccceeccccccchhhhhhhhhcCCCCCcceEEEeeCC-CCCChhHHHHHHHHh
Confidence 3456777889999999999999999999999995 4456899999999999999999999999 999999999999999
Q ss_pred CCcEEEEccCcccCCcccc
Q psy13252 538 TISTIIMLSDGLEETNKFR 556 (558)
Q Consensus 538 ~~~~Ivml~~~~e~~~~~~ 556 (558)
++.+|||||.+.|+++.||
T Consensus 189 ~~~~IVmlt~~~e~~R~kc 207 (374)
T KOG0791|consen 189 KSHIIVMLTKCNEKGRVKC 207 (374)
T ss_pred hcceEEEEeecccccchhh
Confidence 9999999999999999887
No 29
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.82 E-value=8.1e-21 Score=187.00 Aligned_cols=84 Identities=43% Similarity=0.781 Sum_probs=75.0
Q ss_pred ccCCCCCCCCCCCCCCeeeecCCCCCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcccC
Q psy13252 472 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEE 551 (558)
Q Consensus 472 n~~knr~~~i~~~d~~rV~L~~~~~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~e~ 551 (558)
|..|||+.+++|||++||+|.+..+..+|||||||+++...++||+||+| +++|++|||+|||++++.+||||+...|.
T Consensus 1 n~~knR~~~~~~~d~~rv~l~~~~~~~~yi~A~~v~~~~~~~~~I~~q~P-~~~t~~~FW~mv~~~~~~~Iv~L~~~~e~ 79 (235)
T PF00102_consen 1 NREKNRSPDILPYDDSRVKLNPSPGDSDYINASYVDGYKNGKKFIVTQAP-MPDTIEDFWQMVWEQKVQIIVMLCSFDES 79 (235)
T ss_dssp GGGGSSSTTS-BBTTTEEETTTTTTSTTEESEEEEEESSSTEEEEEEES--SGGGHHHHHHHHHHTTBSEEEEESBSEET
T ss_pred CCccCCCCCCCcCcceEEEecCCCCccchhhhhhhccccchhhheeeccc-ccccccceehheeeccccceecccccccc
Confidence 78899999999999999999766666689999999999888999999999 99999999999999999999999999887
Q ss_pred Ccccc
Q psy13252 552 TNKFR 556 (558)
Q Consensus 552 ~~~~~ 556 (558)
+...|
T Consensus 80 ~~~~~ 84 (235)
T PF00102_consen 80 GDEKC 84 (235)
T ss_dssp TEESS
T ss_pred ccccc
Confidence 55544
No 30
>KOG0793|consensus
Probab=99.82 E-value=1e-20 Score=198.93 Aligned_cols=97 Identities=39% Similarity=0.586 Sum_probs=85.6
Q ss_pred cccccCccccccccCCCCCCCCCCCCCCeeeecC--CCCCCCccccccccccCC-CccEEEecCCCCCCcHHHHHHHhHh
Q psy13252 460 ENKSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYDN-TESFIITQDPDMEHTVHDFWRMISE 536 (558)
Q Consensus 460 ~~~~~~~~~~~~n~~knr~~~i~~~d~~rV~L~~--~~~~~~YInAs~i~~~~~-~~~~I~tq~P~~~~t~~dFW~mv~~ 536 (558)
+..++..+..++|..|||...++||||+||.|.. ....+||||||+|-..+. ...||+||+| ++.|+.|||+||||
T Consensus 747 Epn~r~~aq~e~~a~kNR~~a~LpyDhsrV~l~~~~s~s~~dYiNAS~I~DhDPR~paYIAtQgP-l~stiA~FWQmvWe 825 (1004)
T KOG0793|consen 747 EPNSRFVAQREENAPKNRSLAVLPYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQGP-LPSTIADFWQMVWE 825 (1004)
T ss_pred CcchhhhhcccccccccCCCCccccccceeeeccccCccccccccccccccCCCCccceeeccCC-CchHHHHHHHHHHH
Confidence 4556777889999999999999999999999984 445679999999965544 3469999999 99999999999999
Q ss_pred cCCcEEEEccCcccCCccccC
Q psy13252 537 HTISTIIMLSDGLEETNKFRY 557 (558)
Q Consensus 537 ~~~~~Ivml~~~~e~~~~~~y 557 (558)
+++.+|||||.+.|+|...||
T Consensus 826 ~G~~vIV~Lt~l~Engv~qc~ 846 (1004)
T KOG0793|consen 826 SGCVVIVMLTPLAENGVRQCY 846 (1004)
T ss_pred cCcEEEEEecChhhcchhhhh
Confidence 999999999999999977776
No 31
>KOG0789|consensus
Probab=99.74 E-value=1.3e-18 Score=186.42 Aligned_cols=90 Identities=31% Similarity=0.427 Sum_probs=80.8
Q ss_pred ccccccccCCCCCCCCCCCCCCeeeecCCCCCCCccccccccccCCCccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEc
Q psy13252 466 NAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIML 545 (558)
Q Consensus 466 ~~~~~~n~~knr~~~i~~~d~~rV~L~~~~~~~~YInAs~i~~~~~~~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml 545 (558)
+....+|..||||.||.|||++||+|.... ..||||||||+++...++||+||+| +++|.+|||+|||++++..||||
T Consensus 121 ~~~~~~~~~kNr~~dv~~~d~~rV~l~~~~-~~dyI~A~~v~~~~~~~~~I~tQ~P-l~~t~~dFW~mv~~~k~~~Ivml 198 (415)
T KOG0789|consen 121 CDAFLKNMDKNRYSDVQCLDHTRVKLKPPQ-DKDYIHASKIYFPKGPRTAILTQAP-LSKTTEDFWRMVFEEKVESVVLL 198 (415)
T ss_pred hhhhhccccccccCCcCcccCCeeecCCCC-CcccchhhccCCcCCCcCceecCCC-CcccHHHHHHHHHHcCCCEEEEe
Confidence 445678888999999999999999998654 5699999999997634899999999 99999999999999999999999
Q ss_pred cCcccCCccccC
Q psy13252 546 SDGLEETNKFRY 557 (558)
Q Consensus 546 ~~~~e~~~~~~y 557 (558)
|...|.+..+|.
T Consensus 199 ~~~~E~~~~kc~ 210 (415)
T KOG0789|consen 199 CSDEELGAAECA 210 (415)
T ss_pred cchhhccHHHHh
Confidence 999999987775
No 32
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.66 E-value=6.9e-17 Score=168.83 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=68.3
Q ss_pred CCCCCCCCCeeeecCCCCCCCccccccccccCCCccEEEecCCCCC--CcHHHHHHHhHhcCCcEEEEccCcccCCcccc
Q psy13252 479 ESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDME--HTVHDFWRMISEHTISTIIMLSDGLEETNKFR 556 (558)
Q Consensus 479 ~~i~~~d~~rV~L~~~~~~~~YInAs~i~~~~~~~~~I~tq~P~~~--~t~~dFW~mv~~~~~~~Ivml~~~~e~~~~~~ 556 (558)
.+|+||||+||+|+. ++|||||||+ ++.++++|++|.| +. +|++|||+||||+++.+||||+...|.++.+|
T Consensus 305 ~~I~~~~~TrV~ls~----g~yI~ANyI~-~~~k~~aIa~QYP-~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC 378 (535)
T PRK15375 305 SSIPINQQTQVKLSD----GMPVPVNTLT-FDGKPVALAGSYP-KNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQL 378 (535)
T ss_pred cccCccccceEEcCC----CCccccceee-ecCccceEeccCC-CCchhhHHHHHHHHHHcCCCEEEEeeccccCccccc
Confidence 699999999999954 6899999999 8888999999999 65 89999999999999999999999999888888
Q ss_pred CC
Q psy13252 557 YK 558 (558)
Q Consensus 557 y~ 558 (558)
++
T Consensus 379 ~p 380 (535)
T PRK15375 379 PP 380 (535)
T ss_pred Cc
Confidence 74
No 33
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.63 E-value=1.1e-16 Score=137.08 Aligned_cols=101 Identities=25% Similarity=0.484 Sum_probs=79.6
Q ss_pred EEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCC--CCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCC
Q psy13252 211 SIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL--EKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGN 287 (558)
Q Consensus 211 ~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~--~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~ 287 (558)
.+.||||++|||+++|.....+++|++.+++.... ..+||+|||++|+ |||+|+++++++..+... ...
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~------~~~-- 72 (105)
T smart00404 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESE------TGE-- 72 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc------CCC--
Confidence 37899999999999999989999999999876432 3689999999999 999997766554333221 011
Q ss_pred CchhhHHHHHHHHhhcccccccccceeeeeeeeec
Q psy13252 288 KKSELELEFEETHNKCSDHLIRSACQFYLIHQVNL 322 (558)
Q Consensus 288 ~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l 322 (558)
.-..+..+.+|.+|++++++.+||.|+|.+++
T Consensus 73 ---~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00404 73 ---VDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred ---CCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 11256677789999999999999999998875
No 34
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.63 E-value=1.1e-16 Score=137.08 Aligned_cols=101 Identities=25% Similarity=0.484 Sum_probs=79.6
Q ss_pred EEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCC--CCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCC
Q psy13252 211 SIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL--EKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGN 287 (558)
Q Consensus 211 ~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~--~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~ 287 (558)
.+.||||++|||+++|.....+++|++.+++.... ..+||+|||++|+ |||+|+++++++..+... ...
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~------~~~-- 72 (105)
T smart00012 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESE------TGE-- 72 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc------CCC--
Confidence 37899999999999999989999999999876432 3689999999999 999997766554333221 011
Q ss_pred CchhhHHHHHHHHhhcccccccccceeeeeeeeec
Q psy13252 288 KKSELELEFEETHNKCSDHLIRSACQFYLIHQVNL 322 (558)
Q Consensus 288 ~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~~l 322 (558)
.-..+..+.+|.+|++++++.+||.|+|.+++
T Consensus 73 ---~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00012 73 ---VDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred ---CCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 11256677789999999999999999998875
No 35
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.09 E-value=6.8e-11 Score=110.17 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=86.6
Q ss_pred cceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeeeCceEEEEEEE
Q psy13252 119 KKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKL 198 (558)
Q Consensus 119 ~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~v 198 (558)
.+||++-+|+++++.+|...+-+.++..||.++.. +|+.+
T Consensus 16 ~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~----------~~~~~------------------------------ 55 (166)
T PTZ00242 16 FKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGP----------TYDAE------------------------------ 55 (166)
T ss_pred eEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCC----------CCCHH------------------------------
Confidence 58999999999999999999999999999998641 22210
Q ss_pred EEecCCCCCceEEEEEEEEcCcC--CCCCCCChH---HHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehHH
Q psy13252 199 VRTASGKESEERSIFQYHYLAWK--DFQAPENPS---GLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRATD 272 (558)
Q Consensus 199 ~~~~~g~~~~~r~V~~~~y~~Wp--d~gvP~~~~---~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~~ 272 (558)
.....+++|..|| |+++| +.. .+++++..+........+||+|||.||+ |||++++..
T Consensus 56 ----------~~~~~gi~~~~~p~~D~~~P-~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~y----- 119 (166)
T PTZ00242 56 ----------LLEKNGIEVHDWPFDDGAPP-PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALA----- 119 (166)
T ss_pred ----------HHHHCCCEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHH-----
Confidence 0111223344454 76666 443 4455555444332245789999999999 999996543
Q ss_pred HHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeee
Q psy13252 273 LKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQ 319 (558)
Q Consensus 273 l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~ 319 (558)
| ++ ... . . ..+-.+.+|+.|++++ +..|+.|+..
T Consensus 120 L---~~---~~~----~-s-~~eAi~~vr~~R~~~i-~~~Q~~~l~~ 153 (166)
T PTZ00242 120 L---VE---YGG----M-E-PLDAVGFVREKRKGAI-NQTQLQFLKK 153 (166)
T ss_pred H---HH---hCC----C-C-HHHHHHHHHHHCCCCc-hHHHHHHHHH
Confidence 1 11 111 1 1 1455667788899888 4788877754
No 36
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=98.64 E-value=9.5e-08 Score=92.50 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=92.4
Q ss_pred CCceeeeeec---CCccccceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEE
Q psy13252 104 SDYINANFVL---GYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIV 180 (558)
Q Consensus 104 ~dYINAs~I~---g~~~~~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V 180 (558)
.||+|.-|-- --.+.-+||++-+|+..++.+|..-....++..||-+|.. +++.+. +
T Consensus 74 ~~~~~~~~~~~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~----------~Yd~~~-----~----- 133 (241)
T PTZ00393 74 MDYLNPVLNHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCER----------TYNDGE-----I----- 133 (241)
T ss_pred ccccchhcccchhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCC----------CCCHHH-----H-----
Confidence 4566654431 1112359999999999999999999999999999998642 122110 0
Q ss_pred EEeeeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-H
Q psy13252 181 GLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-E 259 (558)
Q Consensus 181 ~~~~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-r 259 (558)
...-+.++ ...|||+++|+ ...+.+++..+.... ...++|+|||.||+ |
T Consensus 134 ---------------------------~~~GI~~~-~lpipDg~aPs-~~~i~~~l~~i~~~l-~~g~~VaVHC~AGlGR 183 (241)
T PTZ00393 134 ---------------------------TSAGINVH-ELIFPDGDAPT-VDIVSNWLTIVNNVI-KNNRAVAVHCVAGLGR 183 (241)
T ss_pred ---------------------------HHcCCeEE-EeecCCCCCCC-HHHHHHHHHHHHHHH-hcCCeEEEECCCCCCH
Confidence 00112233 35799999984 444445555554332 24569999999999 9
Q ss_pred HhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHHHHHHhhcccccccccceeeeeee
Q psy13252 260 VVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEFEETHNKCSDHLIRSACQFYLIHQ 319 (558)
Q Consensus 260 tg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~ 319 (558)
||++++..+ ++ .+.. -.+-...+|++|++++ +..|..||..
T Consensus 184 TGtl~AayL--------I~------~Gms----peeAI~~VR~~RPgAI-n~~Q~~fL~~ 224 (241)
T PTZ00393 184 APVLASIVL--------IE------FGMD----PIDAIVFIRDRRKGAI-NKRQLQFLKA 224 (241)
T ss_pred HHHHHHHHH--------HH------cCCC----HHHHHHHHHHHCCCCC-CHHHHHHHHH
Confidence 999864321 11 0111 1445566778888887 4677766543
No 37
>KOG1720|consensus
Probab=98.47 E-value=6.4e-08 Score=90.53 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=65.1
Q ss_pred EEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCch
Q psy13252 212 IFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKS 290 (558)
Q Consensus 212 V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~ 290 (558)
+.|+++ -.||.++| ++..+.+|++.+..... .|-|.|||.||. |||+.+|..+ | .. ...
T Consensus 116 i~h~~l-~f~Dg~tP-~~~~v~~fv~i~e~~~~--~g~iaVHCkaGlGRTG~liAc~l----m----y~-~g~------- 175 (225)
T KOG1720|consen 116 IDHHDL-FFADGSTP-TDAIVKEFVKIVENAEK--GGKIAVHCKAGLGRTGTLIACYL----M----YE-YGM------- 175 (225)
T ss_pred ceeeee-ecCCCCCC-CHHHHHHHHHHHHHHHh--cCeEEEEeccCCCchhHHHHHHH----H----HH-hCC-------
Confidence 334443 46888887 78889999999987654 689999999999 9999865332 1 11 111
Q ss_pred hhHHHHHHHHhhcccccccccceeeeeeee
Q psy13252 291 ELELEFEETHNKCSDHLIRSACQFYLIHQV 320 (558)
Q Consensus 291 ~~~~e~~~~~r~~R~~~Vqt~~Qy~fi~~~ 320 (558)
.-.|-+..+|.+|++||++.+|+.++|+-
T Consensus 176 -ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q 204 (225)
T KOG1720|consen 176 -TAGEAIAWLRICRPGAVIGPQQHKLLHKQ 204 (225)
T ss_pred -CHHHHHHHHHhcCCccccCHHHHHHHHHH
Confidence 12566788899999999999999888764
No 38
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.76 E-value=2.9e-05 Score=69.82 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=36.1
Q ss_pred EEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcc
Q psy13252 210 RSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGE 265 (558)
Q Consensus 210 r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~ 265 (558)
....|+.+.+|++...+.....+++|++.... ..+||+|||.+|. |||++++
T Consensus 48 ~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~~~~~ 100 (139)
T cd00127 48 FNYLYVPILDLPSQDISKYFDEAVDFIDDARE----KGGKVLVHCLAGVSRSATLVI 100 (139)
T ss_pred ceEEEEEceeCCCCChHHHHHHHHHHHHHHHh----cCCcEEEECCCCCchhHHHHH
Confidence 35667777788755444444455666655543 3579999999999 9999865
No 39
>KOG2836|consensus
Probab=97.73 E-value=0.00012 Score=63.72 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=68.7
Q ss_pred cceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCccccccccCCCCCCcceeceEEEEEeeeeeeCceEEEEEEE
Q psy13252 119 KKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELKL 198 (558)
Q Consensus 119 ~~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~v 198 (558)
.+|.+|-.|...|+..|-.-+-.+++.++|-.|... | ..-. +
T Consensus 17 MrFLIThnPtnaTln~fieELkKygvttvVRVCe~T---------Y-----------dt~~------------------l 58 (173)
T KOG2836|consen 17 MRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT---------Y-----------DTTP------------------L 58 (173)
T ss_pred eEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc---------c-----------CCch------------------h
Confidence 689999999999999999999999999999988532 1 0000 0
Q ss_pred EEecCCCCCceEEEEEEEEcCcC-CCCCCCChHHHHHHHHHHHHH-cCCCCCCEEEEcchhh-HHhhhcc
Q psy13252 199 VRTASGKESEERSIFQYHYLAWK-DFQAPENPSGLLKFIKHVNEA-YSLEKGPILVHCRALV-EVVQFGE 265 (558)
Q Consensus 199 ~~~~~g~~~~~r~V~~~~y~~Wp-d~gvP~~~~~ll~~i~~v~~~-~~~~~~PIvVHCsaGv-rtg~~~~ 265 (558)
.. .| ++...|| |.|.|+...-+-+.+..+... ...+..-|-|||-||+ |+-.+.|
T Consensus 59 ek--~G----------I~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlva 116 (173)
T KOG2836|consen 59 EK--EG----------ITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVA 116 (173)
T ss_pred hh--cC----------ceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHH
Confidence 00 01 3446798 788886666555666655543 3445668999999999 8766644
No 40
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.67 E-value=3.4e-05 Score=73.06 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=53.0
Q ss_pred cCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehHHHHHHHHHHhhccCCCCchhhHHHH
Q psy13252 218 LAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRATDLKSTLETLKRVNDGNKKSELELEF 296 (558)
Q Consensus 218 ~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~~l~~~l~~l~~~~~~~~~~~~~~e~ 296 (558)
..++|+.+|+. ..+-.++..+..... ..+.|+|||.+|+ ||||+++..+.+ ... +.+..+.
T Consensus 78 ~~~~D~~~p~~-~~l~~~v~~i~~~~~-~g~kVvVHC~~GigRSgtviaA~lm~-----------~~~-----~~~~~~~ 139 (180)
T COG2453 78 LPILDGTVPDL-EDLDKIVDFIEEALS-KGKKVVVHCQGGIGRSGTVIAAYLML-----------YGG-----LSLADEA 139 (180)
T ss_pred eeecCCCCCcH-HHHHHHHHHHHHHHh-cCCeEEEEcCCCCchHHHHHHHHHHH-----------HcC-----CCCHHHH
Confidence 47889999943 444444444444332 2349999999999 999985432211 101 1223566
Q ss_pred HHHHhhcccccccccceeeeeeee
Q psy13252 297 EETHNKCSDHLIRSACQFYLIHQV 320 (558)
Q Consensus 297 ~~~~r~~R~~~Vqt~~Qy~fi~~~ 320 (558)
....|..|+++|.+..|+.|....
T Consensus 140 i~~~~~~r~~~v~~~~q~~~~~e~ 163 (180)
T COG2453 140 IAVKRRRRPGAVVTEIQHLFELEQ 163 (180)
T ss_pred HHHHHhcCCcccccHHHHHHHHHH
Confidence 677777777788888776665443
No 41
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.06 E-value=0.0021 Score=57.68 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.8
Q ss_pred CCCCEEEEcchhh-HHhhhcce
Q psy13252 246 EKGPILVHCRALV-EVVQFGET 266 (558)
Q Consensus 246 ~~~PIvVHCsaGv-rtg~~~~~ 266 (558)
..+||+|||.+|. |||++++.
T Consensus 77 ~~~~VlVHC~~G~~RS~~v~~~ 98 (138)
T smart00195 77 KGGKVLVHCQAGVSRSATLIIA 98 (138)
T ss_pred CCCeEEEECCCCCchHHHHHHH
Confidence 4679999999999 99998653
No 42
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=96.66 E-value=0.0046 Score=55.01 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcce
Q psy13252 228 NPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGET 266 (558)
Q Consensus 228 ~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~ 266 (558)
....+.+|+..... ..++|+|||.+|+ |||++++.
T Consensus 58 ~~~~~~~~i~~~~~----~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 58 HLDQAVEFIENAIS----EGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp GHHHHHHHHHHHHH----TTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHHHHHhhhhhhc----ccceeEEEeCCCcccchHHHHH
Confidence 33445555555432 4689999999999 99998643
No 43
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=96.34 E-value=0.0045 Score=56.94 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=54.1
Q ss_pred CCceeeeeecCC--ccccceEEecCCCCCchhhhh-------hhhhcCCccEEEEcCCccccCccccccccCCCCCCcce
Q psy13252 104 SDYINANFVLGY--KELKKFICAQGPMEHTVNDFW-------RMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKT 174 (558)
Q Consensus 104 ~dYINAs~I~g~--~~~~~yIatQ~Pl~~T~~dFW-------~MV~e~~v~~IVmLt~~~E~~~~kc~~YwP~~~~~~~~ 174 (558)
.+-|+.+|++-- ........|-+|-... .|.| .-+.++.+..||.|+...|..+.+ +|.-.+
T Consensus 24 ~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~-~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~----Vp~L~~---- 94 (168)
T PF05706_consen 24 QTPIQIDWLPLSPVNCSGFLGLTFLPGCKF-KDWRRDLQADLERLKDWGAQDVVTLLTDHELARLG----VPDLGE---- 94 (168)
T ss_dssp TS----EEEE-GGGT-SSEEEEES-TT-EE-TTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-----TTHHH----
T ss_pred CCceeeeeecccccCCcceeeeecCCCccc-ccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcC----CccHHH----
Confidence 346777777522 1223445566665321 2222 346678899999999887765432 232100
Q ss_pred eceEEEEEeeeeeeCceEEEEEEEEEecCCCCCceEEEEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEc
Q psy13252 175 YGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHC 254 (558)
Q Consensus 175 ~g~~~V~~~~~~~~~~~~~r~l~v~~~~~g~~~~~r~V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHC 254 (558)
....+-+..+| ..+||.++| +...+..++.++...-. ....|+|||
T Consensus 95 -------------------------------~~~~~Gi~~~h-~PI~D~~aP-d~~~~~~i~~eL~~~L~-~g~~V~vHC 140 (168)
T PF05706_consen 95 -------------------------------AAQARGIAWHH-LPIPDGSAP-DFAAAWQILEELAARLE-NGRKVLVHC 140 (168)
T ss_dssp -------------------------------HHHHTT-EEEE-----TTS----HHHHHHHHHHHHHHHH-TT--EEEE-
T ss_pred -------------------------------HHHHcCCEEEe-cCccCCCCC-CHHHHHHHHHHHHHHHH-cCCEEEEEC
Confidence 00112233334 378999999 45566677766654432 356899999
Q ss_pred chhh-HHhhhcc
Q psy13252 255 RALV-EVVQFGE 265 (558)
Q Consensus 255 saGv-rtg~~~~ 265 (558)
.+|. |||+++|
T Consensus 141 ~GGlGRtGlvAA 152 (168)
T PF05706_consen 141 RGGLGRTGLVAA 152 (168)
T ss_dssp SSSSSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 9999 9999864
No 44
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=96.18 E-value=0.0043 Score=57.73 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=26.5
Q ss_pred EEEEEEcCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcc
Q psy13252 212 IFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGE 265 (558)
Q Consensus 212 V~~~~y~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~ 265 (558)
+.|+....|.+..++...+.+.+.++.+... ...||+|||..|. |||+.+|
T Consensus 59 l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~---~n~PvLiHC~~G~~rTG~vvg 110 (164)
T PF03162_consen 59 LIHIPMSSSKDPWVPISEEQVAEALEIILDP---RNYPVLIHCNHGKDRTGLVVG 110 (164)
T ss_dssp EEE-------GGG----HHHHHHHHHHHH-G---GG-SEEEE-SSSSSHHHHHHH
T ss_pred EEEeccccccCccccCCHHHHHHHHHHHhCC---CCCCEEEEeCCCCcchhhHHH
Confidence 3344444444434555667777777665432 3579999999999 9999864
No 45
>PRK12361 hypothetical protein; Provisional
Probab=95.62 E-value=0.037 Score=61.70 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=43.6
Q ss_pred CcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeeh----HHHHHHHHHHhhccCCCC
Q psy13252 219 AWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRA----TDLKSTLETLKRVNDGNK 288 (558)
Q Consensus 219 ~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i----~~l~~~l~~l~~~~~~~~ 288 (558)
...|+..| +...+-+.++.+.+... ..++|+|||.+|. |+++.++..+.. ..+.+.++.+++.|+...
T Consensus 149 Pi~D~~~p-~~~~l~~a~~~i~~~~~-~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~ 221 (547)
T PRK12361 149 PILDHSVP-TLAQLNQAINWIHRQVR-ANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTAR 221 (547)
T ss_pred ecCCCCCC-cHHHHHHHHHHHHHHHH-CCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCC
Confidence 34466666 55556555555554332 3679999999999 999886543321 135667777777776543
No 46
>KOG1718|consensus
Probab=95.13 E-value=0.042 Score=50.29 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=51.3
Q ss_pred EEEEEEEEcCcCCCCCCC-----ChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehH---HHHHHHHHH
Q psy13252 210 RSIFQYHYLAWKDFQAPE-----NPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRAT---DLKSTLETL 280 (558)
Q Consensus 210 r~V~~~~y~~Wpd~gvP~-----~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~---~l~~~l~~l 280 (558)
+....++|+.-|-...|. ..+.+-+.|..|.. ..|-++|||-||| |++++|-....-. +|.+.....
T Consensus 56 ~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~----~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~v 131 (198)
T KOG1718|consen 56 TSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIM----RGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWV 131 (198)
T ss_pred ccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHh----cCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHH
Confidence 445555665555444442 23344555555554 4789999999999 9888764322111 233444444
Q ss_pred hhccCC-CCchhhHHHHHHHHhh----cccccccccce
Q psy13252 281 KRVNDG-NKKSELELEFEETHNK----CSDHLIRSACQ 313 (558)
Q Consensus 281 ~~~~~~-~~~~~~~~e~~~~~r~----~R~~~Vqt~~Q 313 (558)
+..++. ....+|-.+.+.--++ .-..||++..+
T Consensus 132 Ka~RpiIRPN~GFw~QLi~YE~qL~g~~sV~MV~~p~~ 169 (198)
T KOG1718|consen 132 KARRPIIRPNVGFWRQLIDYEQQLFGNASVRMVQTPVG 169 (198)
T ss_pred HhhCceeCCCccHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 433332 1123454444332222 22367777654
No 47
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=93.94 E-value=0.072 Score=48.73 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=28.8
Q ss_pred cCcCCCCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhh
Q psy13252 218 LAWKDFQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQF 263 (558)
Q Consensus 218 ~~Wpd~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~ 263 (558)
...+|+..| .+..+-.|++.++.. +....+++||.+|. ||.+|
T Consensus 98 ipitd~~~P-~~~~iD~fi~~v~~~--p~~~~l~fhC~~G~GRTTt~ 141 (149)
T PF14566_consen 98 IPITDHQAP-DPEDIDAFINFVKSL--PKDTWLHFHCQAGRGRTTTF 141 (149)
T ss_dssp EEE-TTS----HHHHHHHHHHHHTS---TT-EEEEE-SSSSHHHHHH
T ss_pred EeCCCcCCC-CHHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHH
Confidence 356677777 677788888888765 45678999999998 98887
No 48
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=92.42 E-value=0.19 Score=43.46 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCEEEEcchhhHHhhh
Q psy13252 228 NPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVVQF 263 (558)
Q Consensus 228 ~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGvrtg~~ 263 (558)
+...+..|.+.+... .+||++||..|.|++.+
T Consensus 71 ~~~~v~~f~~~l~~~----~~Pvl~hC~sG~Ra~~l 102 (110)
T PF04273_consen 71 TEEDVEAFADALESL----PKPVLAHCRSGTRASAL 102 (110)
T ss_dssp -HHHHHHHHHHHHTT----TTSEEEE-SCSHHHHHH
T ss_pred CHHHHHHHHHHHHhC----CCCEEEECCCChhHHHH
Confidence 567777787777653 57999999999998776
No 49
>KOG2283|consensus
Probab=92.21 E-value=0.27 Score=52.75 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=33.5
Q ss_pred cCcCCCCCCCChHHHHHHHHHHHHHcCC-CCCCEEEEcchhh-HHhhh
Q psy13252 218 LAWKDFQAPENPSGLLKFIKHVNEAYSL-EKGPILVHCRALV-EVVQF 263 (558)
Q Consensus 218 ~~Wpd~gvP~~~~~ll~~i~~v~~~~~~-~~~PIvVHCsaGv-rtg~~ 263 (558)
.+|+||++| ....+..|.+.+..+-.. ...-++|||.||- |+|+.
T Consensus 78 ~~~~Dh~~P-~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~ 124 (434)
T KOG2283|consen 78 FGFDDHNPP-PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVM 124 (434)
T ss_pred cCCCCCCCC-cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEE
Confidence 599999999 556666777777665433 4567899999997 87765
No 50
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=91.93 E-value=0.3 Score=43.79 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCEEEEcchhhHHhhhcc
Q psy13252 228 NPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVVQFGE 265 (558)
Q Consensus 228 ~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGvrtg~~~~ 265 (558)
+...+..|.+.++. ..+||++||.+|-|+|.+.+
T Consensus 71 ~~~~v~~f~~~~~~----~~~pvL~HC~sG~Rt~~l~a 104 (135)
T TIGR01244 71 TPDDVETFRAAIGA----AEGPVLAYCRSGTRSSLLWG 104 (135)
T ss_pred CHHHHHHHHHHHHh----CCCCEEEEcCCChHHHHHHH
Confidence 44556666665543 36899999999999988744
No 51
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=91.93 E-value=0.13 Score=47.81 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=23.3
Q ss_pred ceEEecCCCCCchhhhhhhhhcCCccEEEEcCCccccCc
Q psy13252 120 KFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSK 158 (558)
Q Consensus 120 ~yIatQ~Pl~~T~~dFW~MV~e~~v~~IVmLt~~~E~~~ 158 (558)
.++=+=.|..-|-+|.+.+. +.++++||=|-...|..+
T Consensus 20 ~lyRS~~l~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 20 RLYRSGNLSNLTEADLERLR-ELGIRTIIDLRSPTERER 57 (164)
T ss_dssp SEEEES--TT--HHHHHHHH-HTT--EEEE-S-HHHHHH
T ss_pred cEEecCCcCcCCHHHHHHHH-hCCCCEEEECCCcccccc
Confidence 44455667777889998888 999999999998877543
No 52
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=90.86 E-value=0.26 Score=44.47 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=28.0
Q ss_pred cCcCCCC-CCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHh
Q psy13252 218 LAWKDFQ-APENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVV 261 (558)
Q Consensus 218 ~~Wpd~g-vP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg 261 (558)
..-||.| .-.....+..++..+.+. +...|+||||-+|+ |+-
T Consensus 65 I~~~~~g~~ap~e~Hv~~i~DF~~~w--p~~apllIHC~aGISRSt 108 (172)
T COG5350 65 IAEPDDGWIAPGEAHVRAIIDFADEW--PRFAPLLIHCYAGISRST 108 (172)
T ss_pred ccCCCccccCCCHHHHHHHHHHHhcC--ccccceeeeeccccccch
Confidence 4455555 334566666666666654 34689999999999 743
No 53
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=89.11 E-value=0.31 Score=48.54 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcce
Q psy13252 230 SGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGET 266 (558)
Q Consensus 230 ~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~ 266 (558)
+.+..++..+.. ..++|+++||.+|- |||..+|+
T Consensus 122 e~~~~~~~l~~~---~e~~PvL~HC~~GkdRTGl~~al 156 (249)
T COG2365 122 ERLVELLQLLAD---AENGPVLIHCTAGKDRTGLVAAL 156 (249)
T ss_pred HHHHHHHHHHhh---cccCCEEEecCCCCcchHHHHHH
Confidence 344444444333 23699999999999 99988653
No 54
>KOG1716|consensus
Probab=87.70 E-value=1 Score=45.75 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcceeeehH---HHHHHHHHHhhccCC
Q psy13252 230 SGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGETEIRAT---DLKSTLETLKRVNDG 286 (558)
Q Consensus 230 ~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~~i~i~---~l~~~l~~l~~~~~~ 286 (558)
....+||..+.. ..|-|+|||.||+ |+.+++...+... .|.+.++.++..+..
T Consensus 142 ~~~~~fI~~a~~----~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~ 198 (285)
T KOG1716|consen 142 PEAISFIEKARE----KGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPI 198 (285)
T ss_pred HHHHHHHHHHHh----CCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 345566666655 3789999999999 9888753332221 144555555554443
No 55
>KOG1719|consensus
Probab=86.29 E-value=2.9 Score=38.05 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=27.5
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcce
Q psy13252 223 FQAPENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGET 266 (558)
Q Consensus 223 ~gvP~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~ 266 (558)
.|.| +...+-.-++.+.+..+ -...+-|||.||- |+.|.++.
T Consensus 87 ~~~P-s~~~i~~aVeFi~k~as-LGktvYVHCKAGRtRSaTvV~c 129 (183)
T KOG1719|consen 87 TGAP-SLENIQKAVEFIHKNAS-LGKTVYVHCKAGRTRSATVVAC 129 (183)
T ss_pred cCCC-CHHHHHHHHHHHHhccc-cCCeEEEEecCCCccchhhhhh
Confidence 3455 55556555666655433 3458999999998 88877543
No 56
>KOG4471|consensus
Probab=83.79 E-value=0.66 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=19.4
Q ss_pred CCCCCCEEEEcchhh-HHhhhccee
Q psy13252 244 SLEKGPILVHCRALV-EVVQFGETE 267 (558)
Q Consensus 244 ~~~~~PIvVHCsaGv-rtg~~~~~~ 267 (558)
..+..||+||||+|. ||..+.++.
T Consensus 371 e~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 371 ESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred hcCCceEEEEcCCCccchHHHHHHH
Confidence 346789999999999 999886543
No 57
>PLN02727 NAD kinase
Probab=80.38 E-value=2.1 Score=49.54 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhcce
Q psy13252 227 ENPSGLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFGET 266 (558)
Q Consensus 227 ~~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~~~ 266 (558)
.+.+.+.+|.+.++.. ...||++||..|. |||++.+.
T Consensus 324 pt~EqVe~fa~~l~~s---lpkPVLvHCKSGarRAGamvA~ 361 (986)
T PLN02727 324 PSAEQVEKFASLVSDS---SKKPIYLHSKEGVWRTSAMVSR 361 (986)
T ss_pred CCHHHHHHHHHHHHhh---cCCCEEEECCCCCchHHHHHHH
Confidence 3778888888888431 3689999999999 99988653
No 58
>KOG1717|consensus
Probab=73.15 E-value=2.2 Score=42.15 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhc
Q psy13252 232 LLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFG 264 (558)
Q Consensus 232 ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~ 264 (558)
-+.||...+. .+.-++|||-||+ |+.|.+
T Consensus 240 AIsfIdeArs----k~cgvLVHClaGISRSvTvt 269 (343)
T KOG1717|consen 240 AISFIDEARS----KNCGVLVHCLAGISRSVTVT 269 (343)
T ss_pred HHHHHHHhhc----cCCcEEEeeeccccchhHHH
Confidence 4556655554 3557999999999 988764
No 59
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.51 E-value=7.3 Score=33.96 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCEEEEcchhhHHhh
Q psy13252 228 NPSGLLKFIKHVNEAYSLEKGPILVHCRALVEVVQ 262 (558)
Q Consensus 228 ~~~~ll~~i~~v~~~~~~~~~PIvVHCsaGvrtg~ 262 (558)
+...+-.|.+.+.+. .+||+.||..|.|+..
T Consensus 72 T~~dV~~f~~Al~ea----egPVlayCrsGtRs~~ 102 (130)
T COG3453 72 TEADVEAFQRALDEA----EGPVLAYCRSGTRSLN 102 (130)
T ss_pred CHHHHHHHHHHHHHh----CCCEEeeecCCchHHH
Confidence 566777777777664 7899999999997543
No 60
>KOG1572|consensus
Probab=54.81 E-value=17 Score=35.54 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.6
Q ss_pred CCCCCEEEEcchhh-HHhhhcc
Q psy13252 245 LEKGPILVHCRALV-EVVQFGE 265 (558)
Q Consensus 245 ~~~~PIvVHCsaGv-rtg~~~~ 265 (558)
..+-|++|||.-|= |||+.++
T Consensus 146 ~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 146 KRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred ccCCceEEecCCCCcchhhhHH
Confidence 35679999999998 9998854
No 61
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=48.91 E-value=13 Score=39.11 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEcchhh-HHhhhc
Q psy13252 231 GLLKFIKHVNEAYSLEKGPILVHCRALV-EVVQFG 264 (558)
Q Consensus 231 ~ll~~i~~v~~~~~~~~~PIvVHCsaGv-rtg~~~ 264 (558)
.+|.....|-+.-.....+|+|||++|. ||..++
T Consensus 215 ~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 215 SILSGASRIADLLHDEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEECTTSSSHHHHHH
T ss_pred HHHHHHHHHHHHhhccCceEEEEcCCCCcccHHHH
Confidence 3333333333333345779999999999 987664
No 62
>KOG1089|consensus
Probab=45.12 E-value=18 Score=40.06 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=29.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceEEecC--CCCCCCCcccccccccC
Q psy13252 367 KSTTNAKSEENKDKNRDESIIPYDRNRVILSP--AKDYSNYINASFIEAYD 415 (558)
Q Consensus 367 ~~~~~~~~~~n~~knr~~~ilp~d~~rv~l~~--~~~~~~yinAs~i~g~~ 415 (558)
.+|..|.-..|-+|+|....+.-. ++ -|.+ ...-.+|+|-.|..-+.
T Consensus 448 ys~qfGtFl~NsekeR~e~~~~~k-t~-slW~~~~~~~~~f~Nply~~~~~ 496 (573)
T KOG1089|consen 448 YSSQFGTFLGNSEKERRELNLSEK-TT-SLWDYLLPRKEEFVNPLYDPRYL 496 (573)
T ss_pred HHhhhccccccCHHHHHHhccccc-ce-ehHHhHhhhhhhhcCcccccccc
Confidence 455567777788888877666533 22 2332 22345799988887544
No 63
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=42.01 E-value=28 Score=29.34 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=13.0
Q ss_pred CCCCEEEEcchhhHHh
Q psy13252 246 EKGPILVHCRALVEVV 261 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg 261 (558)
...||||+|..|.|+.
T Consensus 65 ~~~~ivv~C~~G~rs~ 80 (109)
T cd01533 65 PRTPIVVNCAGRTRSI 80 (109)
T ss_pred CCCeEEEECCCCchHH
Confidence 3579999999998754
No 64
>KOG1147|consensus
Probab=41.54 E-value=9.9 Score=41.37 Aligned_cols=119 Identities=19% Similarity=0.384 Sum_probs=77.1
Q ss_pred CCCcCHHhHHHHHHHHhcCCchhHHH------HHHhhhhCCCCCC-chhhhhhhhccCCCCCCCCCCCCCcceEecCCCC
Q psy13252 28 MAPITRADIVMEYDERHYDSDYGFQQ------EFEQLVNEHFPDR-STKASEARENQHKNRYPDIKAYDQTRVKLTPVDG 100 (558)
Q Consensus 28 ~~pi~~~~~~~~~~~~~~~~~~~~~~------Ef~~l~~~~~~~~-~~~~~~~~~N~~KNR~~ni~p~D~tRV~L~~~~~ 100 (558)
+..-++++=.+.+++|.+.+..|++- .+++. .....+. -..|...+-.+.-+.|.=.+.||-.-.++..++|
T Consensus 314 ~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~-NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEG 392 (712)
T KOG1147|consen 314 CRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSP-NKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEG 392 (712)
T ss_pred ccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCC-CccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhh
Confidence 44567788888888888766666531 22222 1111121 1245555666777888888889888877766555
Q ss_pred CCCC----------------------------------------------CceeeeeecCCccc----------------
Q psy13252 101 VPGS----------------------------------------------DYINANFVLGYKEL---------------- 118 (558)
Q Consensus 101 ~~~~----------------------------------------------dYINAs~I~g~~~~---------------- 118 (558)
.... -|++--+|+|.+.+
T Consensus 393 VThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvE 472 (712)
T KOG1147|consen 393 VTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVE 472 (712)
T ss_pred hhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHH
Confidence 3211 23444455555432
Q ss_pred --cceEEecCCCCCchhhhhhhhhcCCccEE
Q psy13252 119 --KKFICAQGPMEHTVNDFWRMIWEQHLEIV 147 (558)
Q Consensus 119 --~~yIatQ~Pl~~T~~dFW~MV~e~~v~~I 147 (558)
+.||++|||..+.+.-=|.-||.-|-.+|
T Consensus 473 gLkqfIl~QG~Sk~v~~meWdkiWAfNKKvI 503 (712)
T KOG1147|consen 473 GLKQFILAQGPSKNVVTMEWDKIWAFNKKVI 503 (712)
T ss_pred HHHHHHHHhCCccceeeeehHhhhhhccccc
Confidence 57999999999999999999999887766
No 65
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=39.89 E-value=16 Score=27.40 Aligned_cols=20 Identities=45% Similarity=0.619 Sum_probs=15.5
Q ss_pred chhhhHHHHHhhccCCCCCC
Q psy13252 2 TFRNSLRHICRTLRRSHIPV 21 (558)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (558)
||--||.||||..-+...+.
T Consensus 1 ~~~fSLQHLCR~~I~~~t~~ 20 (56)
T cd03738 1 TFPFSLQHICRTVICNCTTY 20 (56)
T ss_pred CCCcCHHHHHHHHHHhcCCc
Confidence 56779999999877766654
No 66
>KOG1530|consensus
Probab=38.86 E-value=23 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEcchhhHHhh
Q psy13252 233 LKFIKHVNEAYSLEKGPILVHCRALVEVVQ 262 (558)
Q Consensus 233 l~~i~~v~~~~~~~~~PIvVHCsaGvrtg~ 262 (558)
.+|++.+-...+.....||++|..|+|+..
T Consensus 75 ~eF~kqvg~~kp~~d~eiIf~C~SG~Rs~~ 104 (136)
T KOG1530|consen 75 PEFLKQVGSSKPPHDKEIIFGCASGVRSLK 104 (136)
T ss_pred HHHHHHhcccCCCCCCcEEEEeccCcchhH
Confidence 467777766555566799999999998554
No 67
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=35.65 E-value=24 Score=29.21 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=14.3
Q ss_pred CCCCEEEEcchhhHHhhh
Q psy13252 246 EKGPILVHCRALVEVVQF 263 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~~ 263 (558)
...||||+|..|.|+...
T Consensus 60 ~~~~ivvyC~~G~rs~~a 77 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKA 77 (101)
T ss_pred CCCEEEEECCCchhHHHH
Confidence 457999999999876543
No 68
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.37 E-value=55 Score=22.72 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEcCcCCCCCCCChHHHHHHHH
Q psy13252 214 QYHYLAWKDFQAPENPSGLLKFIK 237 (558)
Q Consensus 214 ~~~y~~Wpd~gvP~~~~~ll~~i~ 237 (558)
+|++.+||--|+|.-.+++|+-+-
T Consensus 2 ~~~~AG~~~~G~~ql~ESLLdrIt 25 (45)
T PF02061_consen 2 QYAIAGWPRMGCPQLSESLLDRIT 25 (45)
T ss_pred eeeecCccccCCchhhHHHHHHHH
Confidence 688899999999977788887653
No 69
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=30.27 E-value=60 Score=27.55 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=13.8
Q ss_pred CCCCEEEEcchhhHHhhh
Q psy13252 246 EKGPILVHCRALVEVVQF 263 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~~ 263 (558)
...||||+|.+|.|+...
T Consensus 59 ~~~~IVlyC~~G~rS~~a 76 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQA 76 (104)
T ss_pred CCCeEEEEeCCChHHHHH
Confidence 456899999999875543
No 70
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=30.08 E-value=22 Score=24.99 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=12.1
Q ss_pred hhHHHHHhhccCCCCC
Q psy13252 5 NSLRHICRTLRRSHIP 20 (558)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (558)
-||.||||..=+.+..
T Consensus 4 ~SLQHLCR~~In~~~~ 19 (42)
T cd03737 4 STLQHLCRKTVNGHLD 19 (42)
T ss_pred ccHHHHHHHHHHHhcC
Confidence 4899999987766543
No 71
>KOG1147|consensus
Probab=29.48 E-value=10 Score=41.28 Aligned_cols=61 Identities=16% Similarity=0.388 Sum_probs=44.2
Q ss_pred CCCCCCCeeeecC----CCCCCCccccccccccCCC------------------ccEEEecCCCCCCcHHHHHHHhHhcC
Q psy13252 481 IIPYDRNRVILSP----AKDYSNYINASFIEAYDNT------------------ESFIITQDPDMEHTVHDFWRMISEHT 538 (558)
Q Consensus 481 i~~~d~~rV~L~~----~~~~~~YInAs~i~~~~~~------------------~~~I~tq~P~~~~t~~dFW~mv~~~~ 538 (558)
+..|+.+|.-+.. ...-.-|++--+|+|++.+ +.||++||| ..+.+.-=|--||--|
T Consensus 421 p~iwefsRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~-Sk~v~~meWdkiWAfN 499 (712)
T KOG1147|consen 421 PHIWEFSRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGP-SKNVVTMEWDKIWAFN 499 (712)
T ss_pred cceeehhhhhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCC-ccceeeeehHhhhhhc
Confidence 3456666665542 2333457777788887654 469999999 9999999999999877
Q ss_pred CcEE
Q psy13252 539 ISTI 542 (558)
Q Consensus 539 ~~~I 542 (558)
-++|
T Consensus 500 KKvI 503 (712)
T KOG1147|consen 500 KKVI 503 (712)
T ss_pred cccc
Confidence 6665
No 72
>KOG2386|consensus
Probab=29.23 E-value=1.1e+02 Score=32.45 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=39.7
Q ss_pred cCcCCCC-CCCChHHHHHHHHHHHHHcC---CCCCCEEEEcchhh-HHhhhcceeeehH---HHHHHHHHHhhccCCC
Q psy13252 218 LAWKDFQ-APENPSGLLKFIKHVNEAYS---LEKGPILVHCRALV-EVVQFGETEIRAT---DLKSTLETLKRVNDGN 287 (558)
Q Consensus 218 ~~Wpd~g-vP~~~~~ll~~i~~v~~~~~---~~~~PIvVHCsaGv-rtg~~~~~~i~i~---~l~~~l~~l~~~~~~~ 287 (558)
..=+-++ +| +...+-.|++.|+.... .+..=|.|||..|. |||-++...++.. +...+++.+...+...
T Consensus 92 ~~c~g~~~vp-~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~g 168 (393)
T KOG2386|consen 92 RNCPGRGVVP-RTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPG 168 (393)
T ss_pred eccCCcccCC-CccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCc
Confidence 3445555 44 45555666666665543 34567999999999 9998754333221 2334445555555443
No 73
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=28.35 E-value=29 Score=28.84 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=14.4
Q ss_pred CCCCEEEEcchhhHHhhh
Q psy13252 246 EKGPILVHCRALVEVVQF 263 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~~ 263 (558)
...|++|+|+.|.|++..
T Consensus 60 ~~~~ivv~C~~G~rS~~a 77 (110)
T COG0607 60 DDDPIVVYCASGVRSAAA 77 (110)
T ss_pred CCCeEEEEeCCCCChHHH
Confidence 468999999999976543
No 74
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=27.30 E-value=38 Score=27.94 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.3
Q ss_pred CCCCEEEEcchhhHHhh
Q psy13252 246 EKGPILVHCRALVEVVQ 262 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~ 262 (558)
...||||+|..|.|+..
T Consensus 60 ~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 60 DDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCCeEEEEcCCCCcHHH
Confidence 45799999999986543
No 75
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=25.18 E-value=63 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=13.2
Q ss_pred CCCCEEEEcchhhHHhh
Q psy13252 246 EKGPILVHCRALVEVVQ 262 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~ 262 (558)
...||||+|..|.|+..
T Consensus 65 ~~~~ivv~c~~g~~s~~ 81 (106)
T cd01519 65 KDKELIFYCKAGVRSKA 81 (106)
T ss_pred CCCeEEEECCCcHHHHH
Confidence 46799999999886543
No 76
>PLN02160 thiosulfate sulfurtransferase
Probab=25.12 E-value=52 Score=29.33 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=14.3
Q ss_pred CCCCEEEEcchhhHHhhh
Q psy13252 246 EKGPILVHCRALVEVVQF 263 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~~ 263 (558)
...||||||..|.|+...
T Consensus 80 ~~~~IivyC~sG~RS~~A 97 (136)
T PLN02160 80 PADDILVGCQSGARSLKA 97 (136)
T ss_pred CCCcEEEECCCcHHHHHH
Confidence 457999999999986643
No 77
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=24.83 E-value=1.1e+02 Score=28.23 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=32.9
Q ss_pred ccEEEecCCCCCCcHHHHHHHhHhcCCcEEEEccCcc
Q psy13252 513 ESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGL 549 (558)
Q Consensus 513 ~~~I~tq~P~~~~t~~dFW~mv~~~~~~~Ivml~~~~ 549 (558)
.+||++-+| ++.++.+|....-+.++..||.++...
T Consensus 16 ~r~~~~~~P-~~~~~~~~l~~L~~~gI~~Iv~l~~~~ 51 (166)
T PTZ00242 16 FKFLILDAP-SPSNLPLYIKELQRYNVTHLVRVCGPT 51 (166)
T ss_pred eEEEEecCC-CcccHHHHHHHHHhCCCeEEEecCCCC
Confidence 589999999 999999999999999999999998653
No 78
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=23.36 E-value=83 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEcchhh
Q psy13252 231 GLLKFIKHVNEAYSLEKGPILVHCRALV 258 (558)
Q Consensus 231 ~ll~~i~~v~~~~~~~~~PIvVHCsaGv 258 (558)
.+-...+.+........+.+|||||+..
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 3444555554332234678999999765
No 79
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=21.18 E-value=64 Score=26.07 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.2
Q ss_pred CCCCEEEEcchhhHHhh
Q psy13252 246 EKGPILVHCRALVEVVQ 262 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~ 262 (558)
...||||+|..|.|+..
T Consensus 55 ~~~~ivv~c~~g~~s~~ 71 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQ 71 (96)
T ss_pred CCCCEEEEeCCCChHHH
Confidence 46799999998876544
No 80
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=20.74 E-value=1.2e+02 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=13.8
Q ss_pred CCCCEEEEcchhhHHhhh
Q psy13252 246 EKGPILVHCRALVEVVQF 263 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~~ 263 (558)
...|||++|..|.|+...
T Consensus 77 ~~~~iv~yc~~g~~s~~~ 94 (118)
T cd01449 77 PDKPVIVYCGSGVTACVL 94 (118)
T ss_pred CCCCEEEECCcHHHHHHH
Confidence 466999999998875543
No 81
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=20.69 E-value=1.2e+02 Score=25.41 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=13.8
Q ss_pred CCCCEEEEcchhhHHhhh
Q psy13252 246 EKGPILVHCRALVEVVQF 263 (558)
Q Consensus 246 ~~~PIvVHCsaGvrtg~~ 263 (558)
...||+|+|..|.|+...
T Consensus 57 ~~~~vvlyC~~G~rS~~a 74 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMA 74 (101)
T ss_pred CCCeEEEEeCCCHHHHHH
Confidence 456899999999876544
Done!