RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13252
(558 letters)
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 259 bits (664), Expect = 4e-83
Identities = 91/207 (43%), Positives = 125/207 (60%), Gaps = 4/207 (1%)
Query: 50 GFQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINA 109
G ++EFE+L D S + EN+ KNRY D+ YD TRVKL P G GSDYINA
Sbjct: 1 GLEEEFEKLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPG-EGSDYINA 59
Query: 110 NFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQE 169
+++ G K +I QGP+ TV DFWRM+WEQ + +++MLT L E + KCA+YWP++E
Sbjct: 60 SYIDGPNGPKAYIATQGPLPSTVEDFWRMVWEQKVTVIVMLTELVEKGREKCAQYWPDEE 119
Query: 170 EGDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENP 229
TYGD V L + +K +Y +R L++ T SE R++ YHY W D PE+P
Sbjct: 120 GEPLTYGDITVTLKSVEKVDDYTIRTLEVTNT---GCSETRTVTHYHYTNWPDHGVPESP 176
Query: 230 SGLLKFIKHVNEAYSLEKGPILVHCRA 256
+L I+ V ++ S GPI+VHC A
Sbjct: 177 ESILDLIRAVRKSQSTSTGPIVVHCSA 203
Score = 119 bits (301), Expect = 2e-30
Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 447 IIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDY-SNYINASF 505
+ ++L + K +++S T A EN+DKNR + ++PYD RV L P S+YINAS+
Sbjct: 2 LEEEFEKLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPGEGSDYINASY 61
Query: 506 IEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNK 554
I+ + +++I TQ P + TV DFWRM+ E ++ I+ML++ L E +
Sbjct: 62 IDGPNGPKAYIATQGP-LPSTVEDFWRMVWEQKVTVIVMLTE-LVEKGR 108
Score = 115 bits (290), Expect = 4e-29
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 358 RLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDY-SNYINASFIEAYDN 416
+L + K +++S T A EN+DKNR + ++PYD RV L P S+YINAS+I+ +
Sbjct: 8 KLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPGEGSDYINASYIDGPNG 67
Query: 417 TESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSD 452
+++I TQ P + TV DFWRM+ E ++ I+ML++
Sbjct: 68 PKAYIATQGP-LPSTVEDFWRMVWEQKVTVIVMLTE 102
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 246 bits (630), Expect = 2e-78
Identities = 87/180 (48%), Positives = 113/180 (62%), Gaps = 6/180 (3%)
Query: 78 HKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDFWR 137
KNRY DI YD TRVKL P D GSDYINA+++ GY K +I QGP+ +TV DFWR
Sbjct: 1 KKNRYKDILPYDHTRVKLKPDDD-EGSDYINASYIDGYNPPKAYIATQGPLPNTVEDFWR 59
Query: 138 MIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGEYILRELK 197
M+WEQ + +++MLT L E + KCA+YWPE EEG TYGD V LV+E+K +Y +R LK
Sbjct: 60 MVWEQKVPVIVMLTELVEKGREKCAQYWPE-EEGSLTYGDITVTLVSEEKLDDYTVRTLK 118
Query: 198 LVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL-EKGPILVHCRA 256
L T E R++ + Y W D PE+P LL ++ V ++ GPI+VHC A
Sbjct: 119 LSNT---GTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSA 175
Score = 107 bits (269), Expect = 2e-26
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 474 DKNRDESIIPYDRNRVILSPAKDY-SNYINASFIEAYDNTESFIITQDPDMEHTVHDFWR 532
KNR + I+PYD RV L P D S+YINAS+I+ Y+ +++I TQ P + +TV DFWR
Sbjct: 1 KKNRYKDILPYDHTRVKLKPDDDEGSDYINASYIDGYNPPKAYIATQGP-LPNTVEDFWR 59
Query: 533 MISEHTISTIIMLSDGLEETNK 554
M+ E + I+ML++ L E +
Sbjct: 60 MVWEQKVPVIVMLTE-LVEKGR 80
Score = 105 bits (264), Expect = 1e-25
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 379 DKNRDESIIPYDRNRVILSPAKDY-SNYINASFIEAYDNTESFIITQDPDMEHTVHDFWR 437
KNR + I+PYD RV L P D S+YINAS+I+ Y+ +++I TQ P + +TV DFWR
Sbjct: 1 KKNRYKDILPYDHTRVKLKPDDDEGSDYINASYIDGYNPPKAYIATQGP-LPNTVEDFWR 59
Query: 438 MISEHTISTIIMLSD 452
M+ E + I+ML++
Sbjct: 60 MVWEQKVPVIVMLTE 74
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 232 bits (593), Expect = 5e-73
Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 8/183 (4%)
Query: 76 NQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEHTVNDF 135
N KNRY DI YD TRVKLTP SDYINA+++ GY++ + FI QGP+ +T+ DF
Sbjct: 1 NLEKNRYKDILPYDHTRVKLTPGGP---SDYINASYIDGYRKPRAFIATQGPLPNTIEDF 57
Query: 136 WRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFG-EYILR 194
WRM+WEQ + ++MLT LEE + KC +YWPE+EEG TYGD V LV E++ +Y +R
Sbjct: 58 WRMVWEQKVTTIVMLTELEEKGREKCDQYWPEEEEGSLTYGDISVTLVKEEEEEDDYTVR 117
Query: 195 ELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL-EKGPILVH 253
+L G E R++ +HY W D PE+P LL I+ V ++ + GPI+VH
Sbjct: 118 TFELKN---GGSEETRTVTHFHYTGWPDHGVPESPKSLLDLIRKVRKSQADPRSGPIVVH 174
Query: 254 CRA 256
C A
Sbjct: 175 CSA 177
Score = 106 bits (268), Expect = 3e-26
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Query: 472 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFW 531
N +KNR + I+PYD RV L+P S+YINAS+I+ Y +FI TQ P + +T+ DFW
Sbjct: 1 NLEKNRYKDILPYDHTRVKLTP-GGPSDYINASYIDGYRKPRAFIATQGP-LPNTIEDFW 58
Query: 532 RMISEHTISTIIMLSDGLEETNK 554
RM+ E ++TI+ML++ LEE +
Sbjct: 59 RMVWEQKVTTIVMLTE-LEEKGR 80
Score = 105 bits (264), Expect = 7e-26
Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 377 NKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFW 436
N +KNR + I+PYD RV L+P S+YINAS+I+ Y +FI TQ P + +T+ DFW
Sbjct: 1 NLEKNRYKDILPYDHTRVKLTP-GGPSDYINASYIDGYRKPRAFIATQGP-LPNTIEDFW 58
Query: 437 RMISEHTISTIIML 450
RM+ E ++TI+ML
Sbjct: 59 RMVWEQKVTTIVML 72
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 132 bits (334), Expect = 9e-35
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 51 FQQEFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINAN 110
++E E ++ E S S +N K RYPD +D+ RV L DG G D+INA+
Sbjct: 28 LKEEHEHIMQEIVA-FSCNESLELKNMKKCRYPDAPCFDRNRVILKIEDG--GDDFINAS 84
Query: 111 FVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEE 170
+V G+ +FIC Q P+E T DFW+ I++ + +++M+T + E K C YW E
Sbjct: 85 YVDGHNAKGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHER 144
Query: 171 GDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPS 230
G T+G+F + K F Y + L L T +G + I + Y W P +P+
Sbjct: 145 GKATHGEFKIKTKKIKSFRNYAVTNLCLTDTNTGASLD---IKHFAYEDWPHGGLPRDPN 201
Query: 231 GLLKFIKHVNEAYS-----------LEKGPILVHCRA 256
L F+ V EA +++ PILVHC A
Sbjct: 202 KFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSA 238
Score = 66.9 bits (163), Expect = 3e-12
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 376 ENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDF 435
+N K R +DRNRVIL ++INAS+++ ++ FI TQ P +E T DF
Sbjct: 51 KNMKKCRYPDAPCFDRNRVILKIEDGGDDFINASYVDGHNAKGRFICTQAP-LEETALDF 109
Query: 436 WRMISEHTISTIIMLSDRLTQAKE 459
W+ I + + I+M++ + KE
Sbjct: 110 WQAIFQDQVRVIVMITKIMEDGKE 133
Score = 66.9 bits (163), Expect = 4e-12
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 471 ENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDF 530
+N K R +DRNRVIL ++INAS+++ ++ FI TQ P +E T DF
Sbjct: 51 KNMKKCRYPDAPCFDRNRVILKIEDGGDDFINASYVDGHNAKGRFICTQAP-LEETALDF 109
Query: 531 WRMISEHTISTIIMLSDGLEE 551
W+ I + + I+M++ +E+
Sbjct: 110 WQAIFQDQVRVIVMITKIMED 130
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 132 bits (332), Expect = 2e-34
Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 16/212 (7%)
Query: 54 EFEQLVNEHFPDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVL 113
E Q++ + F D E ENQ KNRY DI +D RV L G SDYI+AN++
Sbjct: 30 EHHQIILKPF-DGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGGG-STSDYIHANWID 87
Query: 114 GYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYS-KIKCAKYWPEQEEGD 172
G+++ KKFI QGP T DFW+ +W++H I++MLT + + + KC +YW E+G+
Sbjct: 88 GFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGN 147
Query: 173 KTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGL 232
DF + + +YIL +++ + R I + W + + P +
Sbjct: 148 IDMEDFRIETLKTSVRAKYILTLIEITDKIL---KDSRKISHFQCSEWFEDETPSDHPDF 204
Query: 233 LKFIKHVN-------EAYSLEKG---PILVHC 254
+KFIK ++ + ++ + PI+VHC
Sbjct: 205 IKFIKIIDINRKKSGKLFNPKDALLCPIVVHC 236
Score = 73.1 bits (179), Expect = 4e-14
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 434 DFWRMISEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVIL-S 492
DF + ++ II K + N + EN+ KNR I +D NRVIL S
Sbjct: 13 DFLKRRNQLNCFGIIRDEHHQIILKPFDGLIANFEKPENQPKNRYWDIPCWDHNRVILDS 72
Query: 493 PAKDYSNYINASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLS 546
S+YI+A++I+ +++ + FI TQ P T DFW+ + + S I+ML+
Sbjct: 73 GGGSTSDYIHANWIDGFEDDKKFIATQGP-FAETCADFWKAVWQEHCSIIVMLT 125
Score = 69.6 bits (170), Expect = 5e-13
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 366 NKSTTNAKSEENKDKNRDESIIPYDRNRVIL-SPAKDYSNYINASFIEAYDNTESFIITQ 424
+ N + EN+ KNR I +D NRVIL S S+YI+A++I+ +++ + FI TQ
Sbjct: 40 DGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGGGSTSDYIHANWIDGFEDDKKFIATQ 99
Query: 425 DPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
P T DFW+ + + S I+ML+ EE
Sbjct: 100 GP-FAETCADFWKAVWQEHCSIIVMLTPTKGTNGEE 134
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 130 bits (327), Expect = 1e-33
Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 19/199 (9%)
Query: 71 SEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFICAQGPMEH 130
+ ++N+ NRY D +D +RV L P + G DYINAN+V G++ KKFIC Q P
Sbjct: 44 NAEKKNRKLNRYLDAVCFDHSRVIL-PAERNRG-DYINANYVDGFEYKKKFICGQAPTRQ 101
Query: 131 TVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVGLVNEKKFGE 190
T DF+RM+W +H++I++ML +E + KC YW + E+G +G F + +
Sbjct: 102 TCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQVETHPH 161
Query: 191 YILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHVNEAY------S 244
Y+ L L S + ++ +++ AW D P+N S L F+ V + S
Sbjct: 162 YVKSTLLLTDGTSATQ----TVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQES 217
Query: 245 LEKG-------PILVHCRA 256
L+ G PI+VHC A
Sbjct: 218 LQIGHNRLQPPPIVVHCNA 236
Score = 66.1 bits (161), Expect = 9e-12
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 370 TNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDME 429
T ++N+ NR + +D +RVIL ++ +YINA++++ ++ + FI Q P
Sbjct: 42 TFNAEKKNRKLNRYLDAVCFDHSRVILPAERNRGDYINANYVDGFEYKKKFICGQAP-TR 100
Query: 430 HTVHDFWRMISEHTISTIIMLSDRLTQAKEE 460
T +DF+RM+ + I+ML + +E+
Sbjct: 101 QTCYDFYRMLWMEHVQIIVMLCKKKENGREK 131
Score = 64.2 bits (156), Expect = 3e-11
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 465 TNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPDME 524
T ++N+ NR + +D +RVIL ++ +YINA++++ ++ + FI Q P
Sbjct: 42 TFNAEKKNRKLNRYLDAVCFDHSRVILPAERNRGDYINANYVDGFEYKKKFICGQAP-TR 100
Query: 525 HTVHDFWRMISEHTISTIIMLSDGLEETNK 554
T +DF+RM+ + I+ML E +
Sbjct: 101 QTCYDFYRMLWMEHVQIIVMLCKKKENGRE 130
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 116 bits (292), Expect = 6e-29
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 14/197 (7%)
Query: 64 PDRSTKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINANFVLGYKELKKFIC 123
S S + N +NRY +I Y+ TRV L +DYINA+++ K+I
Sbjct: 41 SRWSDDTSLSSTNYARNRYSNIVPYEHTRVHLKYGKS--INDYINASYI--KTPRGKYIA 96
Query: 124 AQGPMEHTVNDFWRMIWEQ--HLEIVIMLTNLEEYSKIKCAKYWPEQEEGDKTYGDFIVG 181
QGP T++DFW+M+W + +++MLT+L EY++ KC +YWP + G ++
Sbjct: 97 TQGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIK 156
Query: 182 LVNEKKFG--EYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPSGLLKFIKHV 239
+ F + +L + + I + Y+ W DF P+ S L + I +
Sbjct: 157 QKKYELFNDNIVNVHNFEL----TSINGPPKKIHHFQYINWVDFNVPDIRS-LTEVIHSL 211
Query: 240 NEAYSLEKGPILVHCRA 256
N++ + GPI+VHC A
Sbjct: 212 NDS-PVRTGPIIVHCSA 227
Score = 62.9 bits (153), Expect = 9e-11
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 368 STTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPD 427
S + S N +NR +I+PY+ RV L K ++YINAS+I+ +I TQ P
Sbjct: 44 SDDTSLSSTNYARNRYSNIVPYEHTRVHLKYGKSINDYINASYIKT--PRGKYIATQGPK 101
Query: 428 MEHTVHDFWRMI--SEHTISTIIMLSD 452
E T+ DFW+M+ + I+ML+
Sbjct: 102 PE-TIDDFWKMVWHNVPNNGVIVMLTS 127
Score = 62.9 bits (153), Expect = 9e-11
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 463 STTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFIITQDPD 522
S + S N +NR +I+PY+ RV L K ++YINAS+I+ +I TQ P
Sbjct: 44 SDDTSLSSTNYARNRYSNIVPYEHTRVHLKYGKSINDYINASYIKT--PRGKYIATQGPK 101
Query: 523 MEHTVHDFWRMI--SEHTISTIIMLSD 547
E T+ DFW+M+ + I+ML+
Sbjct: 102 PE-TIDDFWKMVWHNVPNNGVIVMLTS 127
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 112 bits (281), Expect = 2e-27
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 41/223 (18%)
Query: 67 STKASEARENQHKNRYPDIKAYDQTRVKLTPVDGVPGSD-------------------YI 107
+T +EN KNR+ DI +D +RV + + + D YI
Sbjct: 42 TTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAENYI 101
Query: 108 NANFVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPE 167
+ANFV G+KE KFICAQGP E T DF+++I E ++++ LT++++ + KC + W +
Sbjct: 102 HANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDDDDE-KCFELWTK 160
Query: 168 QEEGDKTYGDFIVGLVNEKKFGEYILRELKLVRT---ASGKESE-ERSIFQYHYLAWKDF 223
+E+ + +G F+ +++ I+ EL +T + K S+ R I + + W D
Sbjct: 161 EEDSELAFGRFVAKILD-------IIEELSFTKTRLMITDKISDTSREIHHFWFPDWPDN 213
Query: 224 QAPENPSGLLKFIKHVNE----------AYSLEKGPILVHCRA 256
P + L+ I VNE GPI+VHC A
Sbjct: 214 GIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSA 256
Score = 53.1 bits (127), Expect = 1e-07
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 33/136 (24%)
Query: 434 DFWRMI-SEHTISTIIMLSDRLTQAKEENKSTTNAKSEENKDKNRDESIIPYDRNRVILS 492
F + EH I + +T + +EN KNR I +D +RV+++
Sbjct: 22 KFCEFVLLEHAEVMDIPIRG----------TTNHFLKKENLKKNRFHDIPCWDHSRVVIN 71
Query: 493 PAK-----DY----------------SNYINASFIEAYDNTESFIITQDPDMEHTVHDFW 531
+ D NYI+A+F++ + FI Q P E T DF+
Sbjct: 72 AHESLKMFDVGDSDGKKIEVTSEDNAENYIHANFVDGFKEANKFICAQGP-KEDTSEDFF 130
Query: 532 RMISEHTISTIIMLSD 547
++ISEH I+ L+D
Sbjct: 131 KLISEHESQVIVSLTD 146
Score = 52.0 bits (124), Expect = 3e-07
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 368 STTNAKSEENKDKNRDESIIPYDRNRVILSPAK-----DY----------------SNYI 406
+T + +EN KNR I +D +RV+++ + D NYI
Sbjct: 42 TTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAENYI 101
Query: 407 NASFIEAYDNTESFIITQDPDMEHTVHDFWRMISEHTISTIIMLSD 452
+A+F++ + FI Q P E T DF+++ISEH I+ L+D
Sbjct: 102 HANFVDGFKEANKFICAQGP-KEDTSEDFFKLISEHESQVIVSLTD 146
>gnl|CDD|165107 PHA02740, PHA02740, protein tyrosine phosphatase; Provisional.
Length = 298
Score = 71.9 bits (176), Expect = 7e-14
Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 28/247 (11%)
Query: 53 QEFEQLVNEHFPDRSTKASEAREN--QHKNRYPDIKAYDQTRVKLTPVDGVPGSDYINAN 110
+E+ +V EH D + KA EN + +N I R+KL + V ++A
Sbjct: 29 KEYRAIVPEH-EDEANKACAQAENKAKDENLALHITRLLHRRIKLFNDEKV-----LDAR 82
Query: 111 FVLGYKELKKFICAQGPMEHTVNDFWRMIWEQHLEIVIMLTNLEEYSKIKCAKYWPEQEE 170
FV GY +KFIC E + F + + + ++I+++++ + K ++W +E
Sbjct: 83 FVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHAD--KKCFNQFWSLKEG 140
Query: 171 GDKTYGDFIVGLVNEKKFGEYILRELKLVRTASGKESEERSIFQYHYLAWKDFQAPENPS 230
T F + + + L L L + K + + I + Y AW +P
Sbjct: 141 CVITSDKFQIETLEIIIKPHFNLTLLSL----TDKFGQAQKISHFQYTAWPADGFSHDPD 196
Query: 231 GLLKFIKHVNEAYS-LEK-------GPILVHC------RALVEVVQFGETEIRATDLKST 276
+ F ++++ + LEK PI++ C A+ V TE T + S
Sbjct: 197 AFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSI 256
Query: 277 LETLKRV 283
LK+V
Sbjct: 257 ANALKKV 263
Score = 40.3 bits (94), Expect = 0.002
Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 458 KEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFII 517
++E + KD+N I R+ L + ++A F++ YD + FI
Sbjct: 39 EDEANKACAQAENKAKDENLALHITRLLHRRIKL---FNDEKVLDARFVDGYDFEQKFIC 95
Query: 518 TQDPDMEHTVHDFWRMISEHTISTIIMLSDGLEETNKFRY 557
+ E F + +S++ + I+++S ++ ++
Sbjct: 96 IIN-LCEDACDKFLQALSDNKVQIIVLISRHADKKCFNQF 134
Score = 37.3 bits (86), Expect = 0.015
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 363 KEENKSTTNAKSEENKDKNRDESIIPYDRNRVILSPAKDYSNYINASFIEAYDNTESFII 422
++E + KD+N I R+ L + ++A F++ YD + FI
Sbjct: 39 EDEANKACAQAENKAKDENLALHITRLLHRRIKL---FNDEKVLDARFVDGYDFEQKFIC 95
Query: 423 TQDPDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENK 462
+ E F + +S++ + II+L R K N+
Sbjct: 96 IIN-LCEDACDKFLQALSDNKVQ-IIVLISRHADKKCFNQ 133
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 57.0 bits (138), Expect = 4e-10
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 214 QYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL--EKGPILVHCRA 256
YHY W D PE+P +L+ ++ V + + GP++VHC A
Sbjct: 4 HYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESSGPVVVHCSA 48
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 57.0 bits (138), Expect = 4e-10
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 214 QYHYLAWKDFQAPENPSGLLKFIKHVNEAYSL--EKGPILVHCRA 256
YHY W D PE+P +L+ ++ V + + GP++VHC A
Sbjct: 4 HYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESSGPVVVHCSA 48
>gnl|CDD|205299 pfam13118, DUF3972, Protein of unknown function (DUF3972). This is
a Proteobacterial family of unknown function. Some of
the proteins in this family are annotated as being
kinesin-like proteins.
Length = 126
Score = 31.1 bits (71), Expect = 0.51
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 410 FIEAYDNTESFIITQD---PDMEHTVHDFWRMISEHTISTIIMLSDRLTQAKEENKSTTN 466
+IEA T++ + + M+ + E TI TI+ L +++ AK+E T
Sbjct: 32 YIEASSGTKALVPKAENELIAMDMSSVLLEPSFVEKTIGTILNLHEKVLDAKDE---TIE 88
Query: 467 AKSEENKD 474
A ENK
Sbjct: 89 ALKNENKF 96
>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 29.5 bits (66), Expect = 5.6
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 17/84 (20%)
Query: 320 VNLASGPDQVYVLRLTQAKEENKSTTNAKSEDL-----------------TVLGVRLTQA 362
VNLA D + L Q K N+S NA++E G T
Sbjct: 137 VNLADAVDDGDAVPLGQIKTWNQSAWNARNEANRSRNEADRARNQAERFNNESGASATNT 196
Query: 363 KEENKSTTNAKSEENKDKNRDESI 386
K+ + SE N+ K +S+
Sbjct: 197 KQWRSEADGSNSEANRFKGYADSM 220
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,916,901
Number of extensions: 2694699
Number of successful extensions: 2356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2300
Number of HSP's successfully gapped: 47
Length of query: 558
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 456
Effective length of database: 6,413,494
Effective search space: 2924553264
Effective search space used: 2924553264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)