BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13254
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3
Length = 1358
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 99/136 (72%), Gaps = 8/136 (5%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+F+ +LV+KGYKVARVEQTE+ E M+ R ++ V + RVVRREIC+
Sbjct: 455 WAHSGFPEIAFGRFSDSLVQKGYKVARVEQTETPEMMEARCRKMAHVSKFDRVVRREICR 514
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDR-------LGVCFIDTTIGEFHVGEFED 114
I +G QT+S++D D + +++LL + ++ + GVCF+DT++G+F +G+F D
Sbjct: 515 IITKGTQTYSVLDGDPSENYSRYLLSLKEKEEETSGHTRVYGVCFVDTSLGKFFIGQFSD 574
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 575 DRHCSRFRTLVAHYPP 590
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
Length = 1360
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 99/136 (72%), Gaps = 8/136 (5%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 456 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 515
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGDR------LGVCFIDTTIGEFHVGEFED 114
I +G QT+S+++ D + +K+LL + KE D GVCF+DT++G+F +G+F D
Sbjct: 516 IITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSD 575
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 576 DRHCSRFRTLVAHYPP 591
>sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila
melanogaster GN=Msh6 PE=1 SV=2
Length = 1190
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Query: 2 EYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICK 61
E+AHSGFPEIS+ K + LV++G+KVARVEQTE+ + M R KR K + +VV REIC+
Sbjct: 310 EFAHSGFPEISFDKMSTILVDRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREICQ 369
Query: 62 ITCRGAQTF-SIMDVDANYVDNKFLLGVTK-EG--DRLGVCFIDTTIGEFHVGEFEDDKQ 117
IT RG Q F S + N+ N L V K EG R GVCFIDT+IG+FH+GEFEDDK
Sbjct: 370 ITNRGTQVFGSQCKIGPNHQPNYMLAIVEKDEGTCSRYGVCFIDTSIGDFHLGEFEDDKN 429
Query: 118 FSRLSTLMSHYPP 130
SRL TL+SH+ P
Sbjct: 430 CSRLLTLVSHHMP 442
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6
PE=1 SV=2
Length = 1324
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 19/141 (13%)
Query: 2 EYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICK 61
E H GFPE ++ + LV KGY+V VEQTE+ +Q++ R R + K +VV+RE+C
Sbjct: 428 EQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQR--RKETGSKDKVVKREVCA 485
Query: 62 ITCRGAQT---FSIMDVDANYVDNKFLLGVTKEGDRL---------GVCFIDTTIGEFHV 109
+ +G T + + DA+Y L+ +T+ G+ L GVC +D + +
Sbjct: 486 VVTKGTLTDGEMLLTNPDASY-----LMALTEGGESLTNPTAEHNFGVCLVDVATQKIIL 540
Query: 110 GEFEDDKQFSRLSTLMSHYPP 130
G+F+DD+ S LS L+S P
Sbjct: 541 GQFKDDQDCSALSCLLSEMRP 561
>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=msh6 PE=1 SV=1
Length = 1254
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G PE S+ +A + KGY++ARV+Q E+A +I+ R + ++++VV+R + ++ G
Sbjct: 429 GIPEASFDYWASQFIAKGYRIARVDQLETALGKEIK-DRQRTQKEEKVVQRGLTQVLTSG 487
Query: 67 AQTFSIM---DVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
M D+ + K L E G+CFIDT+ G FH+ EF DD ++L T
Sbjct: 488 TLVDEAMLTSDLSTYCMAIKESLQSDNEEPSFGICFIDTSTGGFHMCEFTDDIHRTKLDT 547
Query: 124 LMSHYPP 130
L++ P
Sbjct: 548 LLTQVRP 554
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum
GN=msh6 PE=3 SV=1
Length = 1260
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIR-TKRDKVPQKQRVVRREICKITCR 65
G PE+S+ +A L+ G+KVA+V+Q E++ M R ++ +K +++RE+ I
Sbjct: 415 GVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTA 474
Query: 66 GAQTFSIMDVDANYVDNKFLLGVTKEGD---RLGVCFIDTTIGEFHVGEFEDDKQFSRLS 122
G M D + +L+ + KE + + GVCF+D +IGEF++ +DD +
Sbjct: 475 GTLLDEQMITDQT---STYLMAI-KENEYDKQYGVCFVDVSIGEFYLCTIQDDDNRMQFE 530
Query: 123 TLMSHYPP 130
TL+ P
Sbjct: 531 TLLLQMMP 538
>sp|Q03834|MSH6_YEAST DNA mismatch repair protein MSH6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSH6 PE=1 SV=1
Length = 1242
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCR 65
+G PE+S+ +A ++ GYKVA+V+Q ES ++R + +V+RE+ I
Sbjct: 367 AGIPEMSFEYWAAQFIQMGYKVAKVDQRESMLAKEMREG------SKGIVKRELQCILTS 420
Query: 66 GAQT-------------FSIMDVDANYVDNKFLLGVT---KEGDRL-GVCFIDTTIGEFH 108
G T +I + N+ + L T K ++ G FIDT GE
Sbjct: 421 GTLTDGDMLHSDLATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQ 480
Query: 109 VGEFEDDKQFSRLSTLMSHYPP 130
+ EFEDD + ++L TLMS P
Sbjct: 481 MLEFEDDSECTKLDTLMSQVRP 502
>sp|Q5M1Z0|MUTS_STRT1 DNA mismatch repair protein MutS OS=Streptococcus thermophilus
(strain CNRZ 1066) GN=mutS PE=3 SV=1
Length = 852
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S + LVE GYKVA EQ E +Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQ------------AVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + K G R G+ ++D + GEF E +D
Sbjct: 108 QVITPG----TVVDSSKPDSANNFLVAIDKVGSRFGLSYMDVSTGEFFATELDD 157
>sp|Q03MY4|MUTS_STRTD DNA mismatch repair protein MutS OS=Streptococcus thermophilus
(strain ATCC BAA-491 / LMD-9) GN=mutS PE=3 SV=1
Length = 852
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S + LVE GYKVA EQ E +Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQ------------AVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + K G R G+ ++D + GEF E +D
Sbjct: 108 QVITPG----TVVDSSKPDSANNFLVAIDKVGSRFGLSYMDVSTGEFFATELDD 157
>sp|Q5M6I1|MUTS_STRT2 DNA mismatch repair protein MutS OS=Streptococcus thermophilus
(strain ATCC BAA-250 / LMG 18311) GN=mutS PE=3 SV=1
Length = 852
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S + LVE GYKVA EQ E +Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQAYIDVLVEMGYKVAIAEQMEDPKQ------------AVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + K G R G+ ++D + GEF E +D
Sbjct: 108 QVITPG----TVVDSSKPDSANNFLVAIDKVGSRFGLSYMDVSTGEFFATELDD 157
>sp|B1I9E5|MUTS_STRPI DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain Hungary19A-6) GN=mutS PE=3 SV=1
Length = 844
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVAIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|C1CN23|MUTS_STRZP DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain P1031) GN=mutS PE=3 SV=1
Length = 844
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|C1CH06|MUTS_STRZJ DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain JJA) GN=mutS PE=3 SV=1
Length = 844
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|B8ZPK0|MUTS_STRPJ DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain ATCC 700669 / Spain 23F-1) GN=mutS PE=3 SV=1
Length = 844
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|C1CAQ5|MUTS_STRP7 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain 70585) GN=mutS PE=3 SV=1
Length = 844
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|Q04I96|MUTS_STRP2 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
serotype 2 (strain D39 / NCTC 7466) GN=mutS PE=3 SV=1
Length = 844
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|P0A3R4|HEXA_STRR6 DNA mismatch repair protein HexA OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=hexA PE=3 SV=1
Length = 844
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|P0A3R3|HEXA_STRPN DNA mismatch repair protein HexA OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=hexA PE=3
SV=1
Length = 844
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|C1CTY2|MUTS_STRZT DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain Taiwan19F-14) GN=mutS PE=3 SV=1
Length = 844
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +EG++ G+ ++D G+F+V D
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLD 157
>sp|Q2GJL7|MUTS_ANAPZ DNA mismatch repair protein MutS OS=Anaplasma phagocytophilum
(strain HZ) GN=mutS PE=3 SV=1
Length = 820
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G P S + LV+ GYKVA EQ E+AE+ R+ R +VRRE+ +I G
Sbjct: 63 GVPYHSSESYIGRLVKSGYKVAVCEQIETAEEARKRSVR-------ALVRREVTRIVTPG 115
Query: 67 AQTF-SIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHV--GEFED-DKQFSRL 121
S++D +N +L ++ G+R GV +++ + G FHV + ED D + RL
Sbjct: 116 TLVEDSLLDAK----ENNYLACISNIGERYGVAWMELSTGLFHVRASKLEDLDSEIQRL 170
>sp|Q6MBV4|MUTS_PARUW DNA mismatch repair protein MutS OS=Protochlamydia amoebophila
(strain UWE25) GN=mutS PE=3 SV=1
Length = 858
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 2 EYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQR-VVRREIC 60
E SG P + + LV KG++VA EQ E P+K + +V+RE+
Sbjct: 75 EIPMSGIPFHTSEGYIDKLVAKGFRVAIAEQIED-------------PKKTKGLVKREVV 121
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQF 118
++ G S + D N N F + K G G+ F+D T GE+ V EF +++
Sbjct: 122 RVVSPGTVINSSLLSDKN---NNFFAALVKVGQIFGLAFLDLTTGEYWVSEFTQEREL 176
>sp|B5E385|MUTS_STRP4 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
serotype 19F (strain G54) GN=mutS PE=3 SV=1
Length = 844
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E+GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHV 109
++ G +++D N FL+ + +EG++ G+ ++D G+F+V
Sbjct: 108 QVITPG----TVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYV 152
>sp|A2RGX2|MUTS_STRPG DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M5 (strain Manfredo) GN=mutS PE=3 SV=1
Length = 851
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q5X9F3|MUTS_STRP6 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394) GN=mutS PE=3 SV=1
Length = 851
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q8NZ24|MUTS_STRP8 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M18 (strain MGAS8232) GN=mutS PE=3 SV=1
Length = 851
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q1JEH0|MUTS_STRPD DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M2 (strain MGAS10270) GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q1JJH0|MUTS_STRPC DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M12 (strain MGAS9429) GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q1J9C1|MUTS_STRPB DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M12 (strain MGAS2096) GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|P0DC61|MUTS_STRPQ DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M3 (strain SSI-1) GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|P0DC60|MUTS_STRP3 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315) GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|B5XJ75|MUTS_STRPZ DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M49 (strain NZ131) GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q48QT6|MUTS_STRPM DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M28 (strain MGAS6180) GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q99XL8|MUTS_STRP1 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M1 GN=mutS PE=3 SV=1
Length = 851
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ V +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q1J489|MUTS_STRPF DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M4 (strain MGAS10750) GN=mutS PE=3 SV=1
Length = 851
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + +G R G+ ++D + GEF V + D
Sbjct: 108 QVITPG----TVVDSAKPDSANNFLVAIDFDGCRYGLAYMDVSTGEFCVTDLAD 157
>sp|Q8CPF0|MUTS_STAES DNA mismatch repair protein MutS OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=mutS PE=3 SV=1
Length = 873
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 22/111 (19%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G P S + +TL+ KGYKVA EQ E + Q + +VRRE+ +I G
Sbjct: 64 GVPYHSADNYIETLINKGYKVAICEQMEDPK------------QTKGMVRREVVRIITPG 111
Query: 67 AQTFSIMDVDANYVD---NKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++M D N +D N ++L E + G+C+ D + GE V F+D
Sbjct: 112 ----TVM--DQNGMDEKKNNYILSFI-ENEEFGLCYCDVSTGELKVTHFKD 155
>sp|Q5HPP5|MUTS_STAEQ DNA mismatch repair protein MutS OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=mutS PE=3 SV=1
Length = 873
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 22/111 (19%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G P S + +TL+ KGYKVA EQ E + Q + +VRRE+ +I G
Sbjct: 64 GVPYHSADNYIETLINKGYKVAICEQMEDPK------------QTKGMVRREVVRIITPG 111
Query: 67 AQTFSIMDVDANYVD---NKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++M D N +D N ++L E + G+C+ D + GE V F+D
Sbjct: 112 ----TVM--DQNGMDEKKNNYILSFI-ENEEFGLCYCDVSTGELKVTHFKD 155
>sp|Q8RA71|MUTS_THETN DNA mismatch repair protein MutS OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=mutS PE=3 SV=1
Length = 869
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQR-VVRREICKITC 64
+G P + + LV+KGYKVA EQ E P K + +V+R++ +I
Sbjct: 65 AGVPYHAADFYIDKLVKKGYKVAICEQLED-------------PSKAKGLVKRDVVRIYT 111
Query: 65 RGAQTFSIMDVDA-NYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
G +I++ ++ + N +L+ V +E D G+C +D T GE + E ++ K R+
Sbjct: 112 PG----TIINPESMDEKSNNYLVSVYREKDNYGICAVDVTTGELYATEIKNCKNGKRIYD 167
Query: 124 LMSHYPP 130
++ Y P
Sbjct: 168 EIAKYSP 174
>sp|B0JFY0|MUTS_MICAN DNA mismatch repair protein MutS OS=Microcystis aeruginosa (strain
NIES-843) GN=mutS PE=3 SV=1
Length = 882
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 4 AHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKIT 63
A +G P + ++++ LVEKGY VA +Q E + + ++R+V R I K+
Sbjct: 88 AMTGVPHHALERYSRLLVEKGYAVAICDQVEDSTE---------AAAEKRLVERAITKLL 138
Query: 64 CRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
G T M N N FL V G+ G+ + D + GEF+ + D + LS
Sbjct: 139 TPGTLTDEGM---LNAKKNNFLAAVVITGENWGLAYSDISTGEFYTTQASD---LTALSL 192
Query: 124 LMSHYPP 130
+S P
Sbjct: 193 ELSRLQP 199
>sp|Q12VC9|MUTS_METBU DNA mismatch repair protein MutS OS=Methanococcoides burtonii
(strain DSM 6242) GN=mutS PE=3 SV=1
Length = 887
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQR-VVRREICKITC 64
+G P + + L++KGYKVA EQ E P+K + +++R + ++
Sbjct: 64 AGIPYHALDNYLPRLIKKGYKVAICEQLED-------------PKKAKGIIKRGVVRVVT 110
Query: 65 RGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTL 124
G + M D + N +L+ ++ GV F+D + GEF +F D + R+++
Sbjct: 111 PGTAIDTSMFTDPS---NNYLMSISGGDGDYGVSFLDVSTGEFLTTQFADKSPYDRIASE 167
Query: 125 MSHYPPC 131
+ P
Sbjct: 168 AARMRPS 174
>sp|A8AZU4|MUTS_STRGC DNA mismatch repair protein MutS OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=mutS PE=3
SV=1
Length = 847
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ L+E GYKVA EQ E + Q VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLIESGYKVAIAEQMEDPK------------QAVGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D +N FL+ + ++ G+ ++D GEF V D
Sbjct: 108 QVITPG----TVVDSSKPVGENNFLVALDRQEQAYGLAYMDLATGEFQVTSLAD 157
>sp|Q46CE2|MUTS_METBF DNA mismatch repair protein MutS OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=mutS PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 28/138 (20%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQR-VVRREICKITC 64
+G P + + L+ KGYKVA EQ E P+K + +V+R + ++
Sbjct: 65 AGIPYHAIDTYLPRLINKGYKVAICEQLED-------------PKKAKGIVKRGVVRVVT 111
Query: 65 RGAQTFSIMDVDANYVDNKFLLGVT-----KEGDR------LGVCFIDTTIGEFHVGEFE 113
G S M DA+ N +L+ V K G +GV F+D + GEF +F
Sbjct: 112 PGTAIDSSMFSDAS---NNYLMAVAGREIGKPGKNAENEFEIGVSFLDISTGEFLTTQFR 168
Query: 114 DDKQFSRLSTLMSHYPPC 131
D + F +L + ++ P
Sbjct: 169 DSENFEKLLSELARMRPS 186
>sp|B9LB04|MUTS_CHLSY DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus
(strain ATCC 29364 / DSM 637 / Y-400-fl) GN=mutS PE=3
SV=1
Length = 966
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQM--DIRTKR------DKVPQKQRVVRR 57
+G P + ++ L+ +GY+VA EQ E M D R + V ++V+R
Sbjct: 74 AGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPVESSGKMVQR 133
Query: 58 EICKITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQ 117
I ++ G M D N +L V E ++G+ + D + GEF EF D +
Sbjct: 134 AIVRVITPGTVIDPAMLPDRT---NNYLAAVIVEQGKVGLAYADLSTGEFAAAEFTDARA 190
Query: 118 FSRLSTLMSHYPP 130
+L ++ P
Sbjct: 191 LMQLQAELARLSP 203
>sp|A9WFZ9|MUTS_CHLAA DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus
(strain ATCC 29366 / DSM 635 / J-10-fl) GN=mutS PE=3
SV=1
Length = 966
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQM--DIRTKR------DKVPQKQRVVRR 57
+G P + ++ L+ +GY+VA EQ E M D R + V ++V+R
Sbjct: 74 AGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPVESSGKMVQR 133
Query: 58 EICKITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQ 117
I ++ G M D N +L V E ++G+ + D + GEF EF D +
Sbjct: 134 AIVRVITPGTVIDPAMLPDRT---NNYLAAVIVEQGKVGLAYADLSTGEFAAAEFTDARA 190
Query: 118 FSRLSTLMSHYPP 130
+L ++ P
Sbjct: 191 LMQLQAELARLSP 203
>sp|Q01X96|MUTS_SOLUE DNA mismatch repair protein MutS OS=Solibacter usitatus (strain
Ellin6076) GN=mutS PE=3 SV=1
Length = 869
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N G P + + L++KG++VA +Q E A+ +++VRREI
Sbjct: 59 NAIPMCGVPYHAAEGYISRLIQKGFRVAICDQVEDAKL------------AKKLVRREIT 106
Query: 61 KITCRGAQTFSIMDVDANYV---DNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDK 116
++ G +D+N V +N FL V + G R V +D + GEF V E E ++
Sbjct: 107 RVVTPGTA------MDSNLVRSRENNFLAAVGRSGSRSAVAHVDVSTGEFRVTEMEPEE 159
>sp|A1BHN5|MUTS_CHLPD DNA mismatch repair protein MutS OS=Chlorobium phaeobacteroides
(strain DSM 266) GN=mutS PE=3 SV=1
Length = 872
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
+E +GFP + + LV+KGYKVA +Q E + + +VRREI
Sbjct: 62 SEVPMAGFPHHASEGYIARLVKKGYKVAVCDQVEDPS------------EAKGIVRREIT 109
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRL--GVCFIDTTIGEFHVGEF 112
I G T+S +D + + L + KEG R+ G FID T EF + E
Sbjct: 110 DIVTPGI-TYSDKILDDRHNNYLCALALLKEGRRVVAGAAFIDVTTAEFKIAEL 162
>sp|C6DZZ3|MUTS_GEOSM DNA mismatch repair protein MutS OS=Geobacter sp. (strain M21)
GN=mutS PE=3 SV=1
Length = 869
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G P S + LVE G KVA EQ E +Q + +V+RE+ K+ G
Sbjct: 65 GIPYHSCAPYIAKLVEAGEKVAICEQAEDPKQ------------AKGIVKREVVKVITPG 112
Query: 67 AQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFE 113
I D + +N +LL + +G+ G+ ++D + GEF V E +
Sbjct: 113 ---LVIEDASLSPKENNYLLALCCDGECYGLSYLDLSTGEFRVTELD 156
>sp|B5EA63|MUTS_GEOBB DNA mismatch repair protein MutS OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=mutS PE=3 SV=1
Length = 837
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G P S + LVE G KVA EQ E +Q + +V+RE+ K+ G
Sbjct: 65 GVPYHSCAPYIAKLVEAGEKVAICEQAEDPKQ------------AKGIVKREVVKVITPG 112
Query: 67 AQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFE 113
I D + +N +LL + +G+ G+ ++D + GEF V E +
Sbjct: 113 ---LVIEDASLSPKENNYLLALCCDGECYGLSYLDLSTGEFRVTELD 156
>sp|A4W4J7|MUTS_STRS2 DNA mismatch repair protein MutS OS=Streptococcus suis (strain
98HAH33) GN=mutS PE=3 SV=1
Length = 847
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P + ++ TLVE G+KVA EQ E + Q VV+RE+
Sbjct: 61 NPIPMAGVPYHAAQQYIDTLVELGHKVAIAEQMEDPK------------QAVGVVKREVV 108
Query: 61 KITCRGAQT-FSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G T S M D+NY L+ + ++G + + ++D + G+F V +D
Sbjct: 109 QVITPGTVTDSSKMGADSNY-----LVAIDRQGVQFALSYMDVSTGQFFVTSLDD 158
>sp|B2V1M2|MUTS_CLOBA DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=mutS PE=3 SV=1
Length = 941
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G P + + LV KGYKVA EQ E + Q + +V+R + K+ G
Sbjct: 63 GIPHHAAAAYIPRLVTKGYKVAICEQLEDPK------------QSKGIVKRGVVKVITPG 110
Query: 67 AQTFSIMDVDANYV-DNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDK 116
+ +D ++N DN +L+ +++ D+ G+ D + GEF F + K
Sbjct: 111 ----TFIDSNSNLENDNTYLMVISEHEDKFGIAMSDISTGEFKTTSFNNIK 157
>sp|A3CR17|MUTS_STRSV DNA mismatch repair protein MutS OS=Streptococcus sanguinis (strain
SK36) GN=mutS PE=3 SV=1
Length = 849
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N +G P S ++ LVE GYKVA EQ E + + + VV+RE+
Sbjct: 60 NPIPMAGVPYHSAQQYIDVLVESGYKVAIAEQMEDPK------------EAKGVVKREVV 107
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFED 114
++ G +++D N FL+ + G+ ++D GEF V ED
Sbjct: 108 QVITPG----TVVDSSKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLED 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,977,971
Number of Sequences: 539616
Number of extensions: 1694474
Number of successful extensions: 4573
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 4221
Number of HSP's gapped (non-prelim): 387
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)