Query psy13254
Match_columns 132
No_of_seqs 105 out of 1032
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 00:04:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_B DNA mismatch repair pro 100.0 1.4E-37 4.8E-42 276.4 12.8 126 1-132 62-209 (918)
2 2o8b_B DNA mismatch repair pro 100.0 2.4E-37 8.3E-42 277.3 12.1 131 2-132 117-255 (1022)
3 1wb9_A DNA mismatch repair pro 100.0 9.7E-36 3.3E-40 261.7 11.4 114 1-132 64-177 (800)
4 1ewq_A DNA mismatch repair pro 100.0 1.9E-35 6.4E-40 258.9 11.7 112 1-132 66-177 (765)
5 3thx_A DNA mismatch repair pro 99.9 1E-23 3.5E-28 187.8 10.1 116 2-132 74-198 (934)
6 1vhx_A Putative holliday junct 72.6 10 0.00034 26.4 6.0 47 85-131 5-57 (150)
7 1iv0_A Hypothetical protein; r 56.4 17 0.00058 23.4 4.3 47 85-131 3-53 (98)
8 2heo_A Z-DNA binding protein 1 47.4 5.5 0.00019 23.6 0.7 21 5-25 34-54 (67)
9 1nu0_A Hypothetical protein YQ 44.6 49 0.0017 22.5 5.3 48 84-131 4-55 (138)
10 1ufm_A COP9 complex subunit 4; 39.3 9.6 0.00033 24.0 0.9 30 5-34 39-68 (84)
11 3l8h_A Putative haloacid dehal 36.8 33 0.0011 22.8 3.5 23 9-31 28-50 (179)
12 2d9s_A CBL E3 ubiquitin protei 35.8 19 0.00064 21.0 1.7 19 8-26 4-22 (53)
13 2oo9_A E3 ubiquitin-protein li 34.3 23 0.00079 20.0 1.9 15 12-26 3-17 (46)
14 2ooa_A E3 ubiquitin-protein li 33.8 19 0.00064 20.9 1.4 20 7-26 5-24 (52)
15 4fbl_A LIPS lipolytic enzyme; 33.0 26 0.0009 25.3 2.6 27 7-33 59-87 (281)
16 2pr7_A Haloacid dehalogenase/e 30.1 25 0.00086 22.0 1.8 21 12-32 22-42 (137)
17 3cuo_A Uncharacterized HTH-typ 29.0 20 0.00069 21.7 1.2 22 6-27 48-69 (99)
18 1r7j_A Conserved hypothetical 29.0 17 0.00057 23.1 0.8 23 5-27 29-51 (95)
19 1f9z_A Glyoxalase I; beta-alph 28.8 74 0.0025 19.5 4.0 25 4-28 73-97 (135)
20 3ib6_A Uncharacterized protein 28.7 53 0.0018 22.3 3.5 23 9-31 35-57 (189)
21 4guc_A Protein BA_2500; virule 27.8 10 0.00034 25.9 -0.5 18 53-70 85-102 (120)
22 3pqk_A Biofilm growth-associat 27.6 30 0.001 21.4 1.9 20 6-25 46-65 (102)
23 3e5d_A Putative glyoxalase I; 27.5 58 0.002 19.8 3.2 26 4-29 73-101 (127)
24 1gxs_B P-(S)-hydroxymandelonit 27.5 42 0.0015 23.0 2.7 20 12-31 54-73 (158)
25 2wm8_A MDP-1, magnesium-depend 27.3 49 0.0017 22.4 3.1 23 9-31 69-91 (187)
26 2fpr_A Histidine biosynthesis 26.7 52 0.0018 22.3 3.1 23 9-31 43-65 (176)
27 3kkj_A Amine oxidase, flavin-c 26.7 34 0.0012 22.9 2.1 18 18-35 19-36 (336)
28 4dgk_A Phytoene dehydrogenase; 26.5 32 0.0011 27.1 2.2 20 17-36 17-36 (501)
29 3hrg_A Uncharacterized protein 26.2 1.1E+02 0.0037 22.8 5.0 32 79-110 6-37 (257)
30 2b82_A APHA, class B acid phos 26.1 36 0.0012 24.1 2.2 23 9-31 89-111 (211)
31 1whs_B Serine carboxypeptidase 25.9 45 0.0015 22.7 2.6 20 12-31 52-71 (153)
32 2p25_A Glyoxalase family prote 25.4 49 0.0017 20.1 2.5 24 4-27 75-98 (126)
33 2d1h_A ST1889, 109AA long hypo 25.4 24 0.00082 21.5 1.0 22 6-27 46-67 (109)
34 2htj_A P fimbrial regulatory p 25.3 22 0.00074 21.3 0.8 20 6-25 24-43 (81)
35 2wtm_A EST1E; hydrolase; 1.60A 25.3 64 0.0022 22.4 3.4 29 6-34 34-66 (251)
36 3jth_A Transcription activator 24.5 26 0.00088 21.5 1.0 21 6-26 46-66 (98)
37 1qgp_A Protein (double strande 24.4 25 0.00086 21.3 0.9 20 6-25 41-60 (77)
38 4ao6_A Esterase; hydrolase, th 24.3 42 0.0014 24.0 2.3 27 7-33 64-94 (259)
39 3r8s_X 50S ribosomal protein L 24.2 37 0.0013 21.0 1.7 16 12-27 62-77 (77)
40 1xpj_A Hypothetical protein; s 24.2 53 0.0018 21.2 2.7 21 11-31 27-47 (126)
41 1y0u_A Arsenical resistance op 24.2 26 0.0009 21.5 1.0 21 6-26 53-73 (96)
42 2gmw_A D,D-heptose 1,7-bisphos 24.1 71 0.0024 22.2 3.5 23 9-31 51-73 (211)
43 4az3_B Lysosomal protective pr 24.1 67 0.0023 21.8 3.2 22 10-31 49-70 (155)
44 3nvb_A Uncharacterized protein 23.2 30 0.001 27.8 1.4 27 7-33 255-281 (387)
45 2oqg_A Possible transcriptiona 23.1 29 0.00098 21.7 1.1 22 6-27 44-65 (114)
46 1qlw_A Esterase; anisotropic r 23.0 50 0.0017 24.6 2.6 20 15-34 87-106 (328)
47 4ep4_A Crossover junction endo 22.7 2E+02 0.0069 20.1 5.8 47 85-131 3-65 (166)
48 1ub9_A Hypothetical protein PH 22.3 30 0.001 20.8 1.0 22 6-27 40-61 (100)
49 3fpn_B Geobacillus stearotherm 21.9 72 0.0025 20.6 2.9 69 11-108 23-91 (106)
50 2fea_A 2-hydroxy-3-keto-5-meth 21.9 69 0.0024 22.4 3.0 23 9-31 78-100 (236)
51 1p6r_A Penicillinase repressor 21.8 34 0.0012 20.3 1.2 19 8-26 39-57 (82)
52 2cjp_A Epoxide hydrolase; HET: 21.7 62 0.0021 23.4 2.8 29 7-35 39-69 (328)
53 3ffv_A Protein SYD; membrane, 21.5 30 0.001 25.0 1.0 37 95-131 141-180 (181)
54 1sfx_A Conserved hypothetical 21.5 32 0.0011 20.8 1.0 20 6-25 44-63 (109)
55 1r1u_A CZRA, repressor protein 21.4 32 0.0011 21.6 1.0 23 6-28 49-71 (106)
56 1nnl_A L-3-phosphoserine phosp 21.3 88 0.003 21.3 3.5 23 9-31 87-109 (225)
57 3rmu_A Methylmalonyl-COA epime 21.3 52 0.0018 20.0 2.1 24 4-27 79-102 (134)
58 4fs3_A Enoyl-[acyl-carrier-pro 21.2 71 0.0024 23.2 3.1 20 16-35 24-43 (256)
59 3ged_A Short-chain dehydrogena 21.2 59 0.002 24.1 2.6 19 16-34 18-36 (247)
60 2obb_A Hypothetical protein; s 20.9 66 0.0023 21.9 2.7 21 11-31 27-47 (142)
61 1ku9_A Hypothetical protein MJ 20.7 33 0.0011 22.0 1.0 20 6-25 51-70 (152)
62 3llv_A Exopolyphosphatase-rela 20.6 62 0.0021 20.8 2.4 30 4-35 10-40 (141)
63 3k7m_X 6-hydroxy-L-nicotine ox 20.5 49 0.0017 25.4 2.1 18 17-34 17-34 (431)
64 3dme_A Conserved exported prot 20.5 50 0.0017 24.4 2.1 17 18-34 21-37 (369)
65 2wfl_A Polyneuridine-aldehyde 20.3 56 0.0019 23.0 2.3 28 7-34 18-47 (264)
66 2o2x_A Hypothetical protein; s 20.2 69 0.0024 22.2 2.7 23 9-31 57-79 (218)
67 3pfb_A Cinnamoyl esterase; alp 20.2 92 0.0032 21.3 3.4 21 13-33 64-84 (270)
No 1
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=1.4e-37 Score=276.36 Aligned_cols=126 Identities=22% Similarity=0.316 Sum_probs=107.9
Q ss_pred CCeeeeeecCcCHHHHHHHHHHcCCeEEEEeeccChhhhhhhhccCCCCCCCCeEEeeeeEEEccceeeccccc------
Q psy13254 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRGAQTFSIMD------ 74 (132)
Q Consensus 1 ~~~~maGfP~~~l~~y~~kLv~~G~kVaiveQ~e~~~~~~~r~k~~~~~~~~~~v~Rev~~I~TpGT~~~~~~~------ 74 (132)
+++||||||+|+++.|++|||++|||||||||+|+|+.++.+. +++++|+|+||+||||||++|+.++
T Consensus 62 ~~~pmaGvP~ha~~~yl~rLv~~G~kVai~eQ~E~p~~k~~~~------~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~ 135 (918)
T 3thx_B 62 HNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGD------NRSSLFSRKLTALYTKSTLIGEDVNPLIKLD 135 (918)
T ss_dssp TTEEEEEEEGGGHHHHHHHHHHHTCCEEEEEECSCHHHHTTST------TCSSCCCEEEEEEECTTCCCSTTTCCEEEC-
T ss_pred CCeeEEeccHhHHHHHHHHHHHcCCcEEEEeccCChhhhhccc------ccCCceeeeEEEEECCCcccccccccccccc
Confidence 4689999999999999999999999999999999998753221 1247999999999999999987541
Q ss_pred ------cccCCCCcceEEEEEecC----------CEEEEEEEECCcceEEEEEEeChhhHHHHHHhhccCCCCC
Q psy13254 75 ------VDANYVDNKFLLGVTKEG----------DRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTLMSHYPPCR 132 (132)
Q Consensus 75 ------~~l~~~~~~yllai~~~~----------~~~Gi~~~D~sTg~~~~~~~~d~~~~~~L~t~l~~~~P~~ 132 (132)
+.+++..+|||+||+... ..||+||+|+|||+|.+++|.|+..+++|.++|.+++|+|
T Consensus 136 ~~~~~~~~l~~~~~nyL~ai~~~~~~~~~~~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~E 209 (918)
T 3thx_B 136 DAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVE 209 (918)
T ss_dssp -CEEECCCSCTTSCCCEEEEEEEC---------CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSE
T ss_pred cccccccccCCCCCcEEEEEEecccccccccccCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeE
Confidence 125678899999998531 1599999999999999999998877889999999999985
No 2
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=2.4e-37 Score=277.29 Aligned_cols=131 Identities=49% Similarity=0.970 Sum_probs=114.7
Q ss_pred CeeeeeecCcCHHHHHHHHHHcCCeEEEEeeccChhhhhhhhccCC-CCCCCCeEEeeeeEEEccceeeccccccccCCC
Q psy13254 2 EYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDK-VPQKQRVVRREICKITCRGAQTFSIMDVDANYV 80 (132)
Q Consensus 2 ~~~maGfP~~~l~~y~~kLv~~G~kVaiveQ~e~~~~~~~r~k~~~-~~~~~~~v~Rev~~I~TpGT~~~~~~~~~l~~~ 80 (132)
++||||||+|+++.|+++||++|||||||||+|+|+.++.|.|+.+ ++|++++|+|+||+||||||++|+.+++.++..
T Consensus 117 ~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT~~d~~~~~~l~~~ 196 (1022)
T 2o8b_B 117 NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSEN 196 (1022)
T ss_dssp SSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTSCCCCTTSCCCSCS
T ss_pred CCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEEEECCCeeecccccccccCC
Confidence 4899999999999999999999999999999999998877777543 233458999999999999999987654456788
Q ss_pred CcceEEEEEec-----C--CEEEEEEEECCcceEEEEEEeChhhHHHHHHhhccCCCCC
Q psy13254 81 DNKFLLGVTKE-----G--DRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTLMSHYPPCR 132 (132)
Q Consensus 81 ~~~yllai~~~-----~--~~~Gi~~~D~sTg~~~~~~~~d~~~~~~L~t~l~~~~P~~ 132 (132)
.+|||+||+.. + ..||+||+|+|||+|++++|.|+..+++|.++|.+++|+|
T Consensus 197 ~~n~l~ai~~~~~~~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~E 255 (1022)
T 2o8b_B 197 YSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQ 255 (1022)
T ss_dssp SCCEEEEEEEEECSCC-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEEE
T ss_pred CCcEEEEEEEccccccCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCcE
Confidence 99999999852 1 2799999999999999999998877889999999999985
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=9.7e-36 Score=261.65 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=104.2
Q ss_pred CCeeeeeecCcCHHHHHHHHHHcCCeEEEEeeccChhhhhhhhccCCCCCCCCeEEeeeeEEEccceeeccccccccCCC
Q psy13254 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRGAQTFSIMDVDANYV 80 (132)
Q Consensus 1 ~~~~maGfP~~~l~~y~~kLv~~G~kVaiveQ~e~~~~~~~r~k~~~~~~~~~~v~Rev~~I~TpGT~~~~~~~~~l~~~ 80 (132)
+++||||||+|+++.|+++||++|||||||||+|+|+.. | ++|+|+|++|+||||++|+.+ ++..
T Consensus 64 ~~~pm~GvP~~~~~~yl~~Lv~~G~kVai~eQ~e~~~~~----------k--~~v~R~v~~v~TpGT~~~~~~---l~~~ 128 (800)
T 1wb9_A 64 EPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS----------K--GPVERKVVRIVTPGTISDEAL---LQER 128 (800)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCGGGC----------S--SSCCEEEEEEECTTTCCCGGG---SCTT
T ss_pred CcCCccCCCHHHHHHHHHHHHHCCCeEEEEEccCCcccc----------C--CcceEEEEEEecCCccccccc---ccCC
Confidence 369999999999999999999999999999999999753 1 799999999999999998644 6788
Q ss_pred CcceEEEEEecCCEEEEEEEECCcceEEEEEEeChhhHHHHHHhhccCCCCC
Q psy13254 81 DNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTLMSHYPPCR 132 (132)
Q Consensus 81 ~~~yllai~~~~~~~Gi~~~D~sTg~~~~~~~~d~~~~~~L~t~l~~~~P~~ 132 (132)
.+|||+||+.....||+||+|+|||+|++.+|.| +++|.++|.+++|++
T Consensus 129 ~~n~l~ai~~~~~~~Gla~~D~stg~~~~~~~~d---~~~l~~~l~~~~P~E 177 (800)
T 1wb9_A 129 QDNLLAAIWQDSKGFGYATLDISSGRFRLSEPAD---RETMAAELQRTNPAE 177 (800)
T ss_dssp SCCCEEEEEECSSCEEEEEECTTTCCEEEECCCS---HHHHHHHHHHHCCSE
T ss_pred CCcEEEEEEEcCCEEEEEEEECCCCEEEEEEecC---HHHHHHHHHhcCCeE
Confidence 9999999987666899999999999999999987 579999999999985
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=1.9e-35 Score=258.87 Aligned_cols=112 Identities=24% Similarity=0.445 Sum_probs=101.9
Q ss_pred CCeeeeeecCcCHHHHHHHHHHcCCeEEEEeeccChhhhhhhhccCCCCCCCCeEEeeeeEEEccceeeccccccccCCC
Q psy13254 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRGAQTFSIMDVDANYV 80 (132)
Q Consensus 1 ~~~~maGfP~~~l~~y~~kLv~~G~kVaiveQ~e~~~~~~~r~k~~~~~~~~~~v~Rev~~I~TpGT~~~~~~~~~l~~~ 80 (132)
+++||||||+|+++.|+++||++|||||||||+|+|+.. | ++|+|+|++|+||||++|+.+ + ..
T Consensus 66 ~~~pm~GvP~~~~~~y~~~Lv~~G~kVai~eQ~e~~~~~----------k--g~v~R~v~~v~TpGT~~~~~~---l-~~ 129 (765)
T 1ewq_A 66 FTTPMAGIPLRAFEAYAERLLKMGFRLAVADQVEPAEEA----------E--GLVRREVTQLLTPGTLLQESL---L-PR 129 (765)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCGGGC----------S--SSCCEEEEEEECGGGCCCGGG---S-CS
T ss_pred CCCceecCcHHHHHHHHHHHHHCCCEEEEEecCCCcccc----------c--CceeEEEEEEEcCceecchhh---c-CC
Confidence 368999999999999999999999999999999999764 1 799999999999999998643 6 78
Q ss_pred CcceEEEEEecCCEEEEEEEECCcceEEEEEEeChhhHHHHHHhhccCCCCC
Q psy13254 81 DNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTLMSHYPPCR 132 (132)
Q Consensus 81 ~~~yllai~~~~~~~Gi~~~D~sTg~~~~~~~~d~~~~~~L~t~l~~~~P~~ 132 (132)
.+|||+||+ .+..||+||+|+|||+|++.+|.|+ ++|.++|.+++|++
T Consensus 130 ~~n~l~ai~-~~~~~Gla~~D~stg~~~~~~~~d~---~~l~~~l~~~~P~E 177 (765)
T 1ewq_A 130 EANYLAAIA-TGDGWGLAFLDVSTGEFKGTVLKSK---SALYDELFRHRPAE 177 (765)
T ss_dssp SCCCEEEEE-ESSSEEEEEEETTTTEEEEEEESSH---HHHHHHHHHHCCSE
T ss_pred CCcEEEEEE-eCCEEEEEEEECCCCEEEEEEecCH---HHHHHHHHhcCCeE
Confidence 999999998 4557999999999999999999976 69999999999985
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.89 E-value=1e-23 Score=187.85 Aligned_cols=116 Identities=16% Similarity=0.280 Sum_probs=94.6
Q ss_pred CeeeeeecCcCHHHHHHH-HHHcCCeEEEEeeccChhhhhhhhccCCCCCCCCeEEeeeeEEEccceeecccccccc---
Q psy13254 2 EYAHSGFPEISYGKFAQT-LVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRGAQTFSIMDVDA--- 77 (132)
Q Consensus 2 ~~~maGfP~~~l~~y~~k-Lv~~G~kVaiveQ~e~~~~~~~r~k~~~~~~~~~~v~Rev~~I~TpGT~~~~~~~~~l--- 77 (132)
++|++++|.+.++.|+++ |+.+||||+||||.++++. .+.++|+|++++||||+++- ++.+
T Consensus 74 ~~~~v~i~~~~~~~~l~~~Ll~~g~rVei~~q~~~~~~-------------~~~~~r~l~~~~TPGnl~~~--ed~L~~~ 138 (934)
T 3thx_A 74 NLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKA-------------SKENDWYLAYKASPGNLSQF--EDILFGN 138 (934)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHTTCCEEEEEEECC-----------------CCCCCEEEEEEEBTTBCTTC--HHHHC--
T ss_pred CCCeeeeCHHHHHHHHHHHHHHcCCEEEEEecCCcccc-------------cCccceEEEEEECCCcHHHH--HHHhhcc
Confidence 589999999999999998 9999999999999776532 25689999999999999962 1112
Q ss_pred -CCCCcceEEEEEec----CCEEEEEEEECCcceEEEEEEeChhhHHHHHHhhccCCCCC
Q psy13254 78 -NYVDNKFLLGVTKE----GDRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTLMSHYPPCR 132 (132)
Q Consensus 78 -~~~~~~yllai~~~----~~~~Gi~~~D~sTg~~~~~~~~d~~~~~~L~t~l~~~~P~~ 132 (132)
+-..++||+||... ...||+||+|+|||+|.+.+|.|+..++.|.++|.+++|+|
T Consensus 139 ~d~~~~~~l~AIk~~~~~~~~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~E 198 (934)
T 3thx_A 139 NDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKE 198 (934)
T ss_dssp ------CCEEEEEECCSSSSCEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSE
T ss_pred ccccccceEEEEEEeecCCCcEEEEEEEECCCCeEEEEecCCchHHHHHHHHHHhCCCeE
Confidence 22347899999862 35899999999999999999999887889999999999985
No 6
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=72.60 E-value=10 Score=26.36 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=33.9
Q ss_pred EEEEEecCCEEEEEEEECCcceEE-EEEEeC-----hhhHHHHHHhhccCCCC
Q psy13254 85 LLGVTKEGDRLGVCFIDTTIGEFH-VGEFED-----DKQFSRLSTLMSHYPPC 131 (132)
Q Consensus 85 llai~~~~~~~Gi~~~D~sTg~~~-~~~~~d-----~~~~~~L~t~l~~~~P~ 131 (132)
+|+|..+..++|++++|....... ++.+.. ......|..++.+++|.
T Consensus 5 iLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~ 57 (150)
T 1vhx_A 5 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTID 57 (150)
T ss_dssp EEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEE
T ss_pred EEEEEccCCEEEEEEEECCCCEEeeEEEEEcCCcchHHHHHHHHHHHHHcCCC
Confidence 788877777899999998544444 455532 23477899999988874
No 7
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=56.44 E-value=17 Score=23.41 Aligned_cols=47 Identities=9% Similarity=0.055 Sum_probs=30.3
Q ss_pred EEEEEecCCEEEEEEEECCcceEE-EEEE---eChhhHHHHHHhhccCCCC
Q psy13254 85 LLGVTKEGDRLGVCFIDTTIGEFH-VGEF---EDDKQFSRLSTLMSHYPPC 131 (132)
Q Consensus 85 llai~~~~~~~Gi~~~D~sTg~~~-~~~~---~d~~~~~~L~t~l~~~~P~ 131 (132)
+|+|..+..++|+|..|....--. +..+ ..+....+|..++...+|.
T Consensus 3 iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~ 53 (98)
T 1iv0_A 3 VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLG 53 (98)
T ss_dssp EEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEeCCCEEEEEEEeCCCCeeeeeEEEEccCcHHHHHHHHHHHHHcCCC
Confidence 688877888999999998532211 2222 2233456788888777654
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=47.41 E-value=5.5 Score=23.65 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=19.6
Q ss_pred eeeecCcCHHHHHHHHHHcCC
Q psy13254 5 HSGFPEISYGKFAQTLVEKGY 25 (132)
Q Consensus 5 maGfP~~~l~~y~~kLv~~G~ 25 (132)
+.|+|..++...++.|.+.||
T Consensus 34 ~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 34 KCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp HHCSCHHHHHHHHHHHHHTTS
T ss_pred HHCcCHHHHHHHHHHHHHCCc
Confidence 468999999999999999999
No 9
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=44.60 E-value=49 Score=22.53 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=32.8
Q ss_pred eEEEEEecCCEEEEEEEECCcceEE-EEEE--e-ChhhHHHHHHhhccCCCC
Q psy13254 84 FLLGVTKEGDRLGVCFIDTTIGEFH-VGEF--E-DDKQFSRLSTLMSHYPPC 131 (132)
Q Consensus 84 yllai~~~~~~~Gi~~~D~sTg~~~-~~~~--~-d~~~~~~L~t~l~~~~P~ 131 (132)
-+|+|..+..++|+|+.|..+.... +..+ . .+.....|..++...+|.
T Consensus 4 ~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~ 55 (138)
T 1nu0_A 4 TLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPD 55 (138)
T ss_dssp EEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCS
T ss_pred eEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcchHHHHHHHHHHHcCCC
Confidence 4788877788999999999765433 2222 2 123357888888877664
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=39.31 E-value=9.6 Score=23.97 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=26.2
Q ss_pred eeeecCcCHHHHHHHHHHcCCeEEEEeecc
Q psy13254 5 HSGFPEISYGKFAQTLVEKGYKVARVEQTE 34 (132)
Q Consensus 5 maGfP~~~l~~y~~kLv~~G~kVaiveQ~e 34 (132)
+.|+|....+.++.+||..|.=-|.+||..
T Consensus 39 ll~ls~~~vE~~ls~mI~~~~l~akIDq~~ 68 (84)
T 1ufm_A 39 LLEIPAAKAEKIASQMITEGRMNGFIDQID 68 (84)
T ss_dssp HTTSCHHHHHHHHHHHHHTTSSCEEEETTT
T ss_pred HHCcCHHHHHHHHHHHHhCCcEEEEEeCCC
Confidence 357888999999999999998889999865
No 11
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=36.77 E-value=33 Score=22.84 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=19.2
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|.......+++|-++|++++|+-
T Consensus 28 ~~~g~~~~l~~L~~~g~~~~i~T 50 (179)
T 3l8h_A 28 ALPGSLQAIARLTQADWTVVLAT 50 (179)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEE
T ss_pred ECcCHHHHHHHHHHCCCEEEEEE
Confidence 44556788999999999999995
No 12
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.77 E-value=19 Score=21.01 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.8
Q ss_pred ecCcCHHHHHHHHHHcCCe
Q psy13254 8 FPEISYGKFAQTLVEKGYK 26 (132)
Q Consensus 8 fP~~~l~~y~~kLv~~G~k 26 (132)
.|....+.++++|+..||.
T Consensus 4 ~~~~~~e~~I~~L~~lGF~ 22 (53)
T 2d9s_A 4 GSSGQLSSEIERLMSQGYS 22 (53)
T ss_dssp SCCSCSHHHHHHHHHHTCC
T ss_pred CCccchHHHHHHHHHcCCC
Confidence 3566778899999999996
No 13
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=34.31 E-value=23 Score=20.00 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHcCCe
Q psy13254 12 SYGKFAQTLVEKGYK 26 (132)
Q Consensus 12 ~l~~y~~kLv~~G~k 26 (132)
.++..+.+|+..||+
T Consensus 3 ~~e~~I~~L~s~Gf~ 17 (46)
T 2oo9_A 3 QLSSEIENLMSQGYS 17 (46)
T ss_dssp HHHHHHHHHHHTTBC
T ss_pred chHHHHHHHHHcCCC
Confidence 578999999999996
No 14
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=33.75 E-value=19 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=12.7
Q ss_pred eecCcCHHHHHHHHHHcCCe
Q psy13254 7 GFPEISYGKFAQTLVEKGYK 26 (132)
Q Consensus 7 GfP~~~l~~y~~kLv~~G~k 26 (132)
..|....+.++++|+..||.
T Consensus 5 ~~~~~~~~~~Ia~Lm~mGFs 24 (52)
T 2ooa_A 5 EAALENVDAKIAKLMGEGYA 24 (52)
T ss_dssp ------CHHHHHHHHHTTCC
T ss_pred CCCCCChHHHHHHHHHcCCC
Confidence 34555677999999999995
No 15
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=33.03 E-value=26 Score=25.30 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=21.2
Q ss_pred eecCc--CHHHHHHHHHHcCCeEEEEeec
Q psy13254 7 GFPEI--SYGKFAQTLVEKGYKVARVEQT 33 (132)
Q Consensus 7 GfP~~--~l~~y~~kLv~~G~kVaiveQ~ 33 (132)
||+.+ .+..+++.|.++||+|...|.-
T Consensus 59 G~~~s~~~~~~la~~La~~Gy~Via~Dl~ 87 (281)
T 4fbl_A 59 GFTGSPQSMRFLAEGFARAGYTVATPRLT 87 (281)
T ss_dssp CTTCCGGGGHHHHHHHHHTTCEEEECCCT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEECCC
Confidence 55544 3567888999999999999975
No 16
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=30.10 E-value=25 Score=21.96 Aligned_cols=21 Identities=5% Similarity=0.142 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHcCCeEEEEee
Q psy13254 12 SYGKFAQTLVEKGYKVARVEQ 32 (132)
Q Consensus 12 ~l~~y~~kLv~~G~kVaiveQ 32 (132)
.....+++|-++|++++|+--
T Consensus 22 ~~~~~l~~L~~~G~~~~i~S~ 42 (137)
T 2pr7_A 22 RWRNLLAAAKKNGVGTVILSN 42 (137)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC
T ss_pred cHHHHHHHHHHCCCEEEEEeC
Confidence 355678888899999999953
No 17
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=29.04 E-value=20 Score=21.70 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=19.1
Q ss_pred eeecCcCHHHHHHHHHHcCCeE
Q psy13254 6 SGFPEISYGKFAQTLVEKGYKV 27 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~kV 27 (132)
.|++..++..++++|.++|+=.
T Consensus 48 l~is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 48 TGLSASATSQHLARMRDEGLID 69 (99)
T ss_dssp HCCCHHHHHHHHHHHHHTTSEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEE
Confidence 5788899999999999999843
No 18
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=29.03 E-value=17 Score=23.08 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=19.9
Q ss_pred eeeecCcCHHHHHHHHHHcCCeE
Q psy13254 5 HSGFPEISYGKFAQTLVEKGYKV 27 (132)
Q Consensus 5 maGfP~~~l~~y~~kLv~~G~kV 27 (132)
.+|+++.++..|+..|.++|+=.
T Consensus 29 ~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 29 GANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhCcCHHHHHHHHHHHHHCCCeE
Confidence 46889999999999999999843
No 19
>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A
Probab=28.77 E-value=74 Score=19.55 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=19.4
Q ss_pred eeeeecCcCHHHHHHHHHHcCCeEE
Q psy13254 4 AHSGFPEISYGKFAQTLVEKGYKVA 28 (132)
Q Consensus 4 ~maGfP~~~l~~y~~kLv~~G~kVa 28 (132)
.+.+|-...++...++|.++|.++.
T Consensus 73 ~~~~~~v~d~~~~~~~l~~~G~~~~ 97 (135)
T 1f9z_A 73 GHIALSVDNAAEACEKIRQNGGNVT 97 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHTTCEEE
T ss_pred cEEEEEeCCHHHHHHHHHHCCCEEe
Confidence 4566777778888888888888764
No 20
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=28.70 E-value=53 Score=22.30 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.4
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|..-+...+++|-++|++++|+-
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~T 57 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAILS 57 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEE
T ss_pred eCcCHHHHHHHHHHCCCEEEEEE
Confidence 45566788999999999999996
No 21
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=27.77 E-value=10 Score=25.87 Aligned_cols=18 Identities=17% Similarity=-0.018 Sum_probs=15.5
Q ss_pred CeEEeeeeEEEccceeec
Q psy13254 53 RVVRREICKITCRGAQTF 70 (132)
Q Consensus 53 ~~v~Rev~~I~TpGT~~~ 70 (132)
..+.=.||.+|||||++-
T Consensus 85 ~~f~TpIT~vY~pGtYVA 102 (120)
T 4guc_A 85 GRFVTPITKAYNPGTYVA 102 (120)
T ss_dssp EEEEEECCTTSCSEEEEE
T ss_pred eEEEeecccccCCCcEEE
Confidence 578889999999999983
No 22
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=27.59 E-value=30 Score=21.38 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.5
Q ss_pred eeecCcCHHHHHHHHHHcCC
Q psy13254 6 SGFPEISYGKFAQTLVEKGY 25 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~ 25 (132)
.|++..++..++++|.++|+
T Consensus 46 l~is~~tvs~~L~~L~~~Gl 65 (102)
T 3pqk_A 46 IGIGQPTLSQQLGVLRESGI 65 (102)
T ss_dssp HTCCTTHHHHHHHHHHHTTS
T ss_pred HCcCHHHHHHHHHHHHHCCC
Confidence 48899999999999999997
No 23
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=27.54 E-value=58 Score=19.85 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=19.7
Q ss_pred eeeeecCcC---HHHHHHHHHHcCCeEEE
Q psy13254 4 AHSGFPEIS---YGKFAQTLVEKGYKVAR 29 (132)
Q Consensus 4 ~maGfP~~~---l~~y~~kLv~~G~kVai 29 (132)
.+.+|-... ++...++|.++|.++.-
T Consensus 73 ~hi~~~v~d~~~v~~~~~~l~~~G~~~~~ 101 (127)
T 3e5d_A 73 AHIAISTGTKEAVDELTEKLRQDGFAIAG 101 (127)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCeEec
Confidence 455666666 88999999999998754
No 24
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5
Probab=27.52 E-value=42 Score=23.02 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHcCCeEEEEe
Q psy13254 12 SYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 12 ~l~~y~~kLv~~G~kVaive 31 (132)
+.-.+++.|+++|+||.|.-
T Consensus 54 ~~~~~~~~Ll~~girVliys 73 (158)
T 1gxs_B 54 DLLPVYRELIQAGLRVWVYS 73 (158)
T ss_dssp BCHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHcCCeEEEEe
Confidence 45578899999999999984
No 25
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=27.31 E-value=49 Score=22.41 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=19.5
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|...+...+++|-++|++++|+-
T Consensus 69 ~~~g~~e~L~~L~~~G~~v~ivT 91 (187)
T 2wm8_A 69 LYPEVPEVLKRLQSLGVPGAAAS 91 (187)
T ss_dssp CCTTHHHHHHHHHHHTCCEEEEE
T ss_pred cchhHHHHHHHHHHCCceEEEEe
Confidence 45567788999999999999996
No 26
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=26.73 E-value=52 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.8
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|..-....+++|-++||+++|+-
T Consensus 43 ~~pg~~e~L~~L~~~G~~l~i~T 65 (176)
T 2fpr_A 43 FEPGVIPQLLKLQKAGYKLVMIT 65 (176)
T ss_dssp BCTTHHHHHHHHHHTTEEEEEEE
T ss_pred CCccHHHHHHHHHHCCCEEEEEE
Confidence 44566778999999999999985
No 27
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=26.70 E-value=34 Score=22.90 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHcCCeEEEEeeccC
Q psy13254 18 QTLVEKGYKVARVEQTES 35 (132)
Q Consensus 18 ~kLv~~G~kVaiveQ~e~ 35 (132)
..|-++|++|.|+|.-..
T Consensus 19 ~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 19 QALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp HHHHHTTCCEEEECSSSS
T ss_pred HHHHHCCCCEEEEECCCC
Confidence 456679999999997543
No 28
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=26.47 E-value=32 Score=27.14 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHcCCeEEEEeeccCh
Q psy13254 17 AQTLVEKGYKVARVEQTESA 36 (132)
Q Consensus 17 ~~kLv~~G~kVaiveQ~e~~ 36 (132)
+..|.++|++|.|+|+-..+
T Consensus 17 A~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 17 AIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp HHHHHHTTCCEEEECCC---
T ss_pred HHHHHHCCCcEEEEccCCCC
Confidence 34677899999999987655
No 29
>3hrg_A Uncharacterized protein BT_3980 with actin-like A fold; NP_812891.1, bacteroides thetaiotaomicron BT_3980; HET: MSE UNL; 1.85A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.24 E-value=1.1e+02 Score=22.75 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=26.0
Q ss_pred CCCcceEEEEEecCCEEEEEEEECCcceEEEE
Q psy13254 79 YVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVG 110 (132)
Q Consensus 79 ~~~~~yllai~~~~~~~Gi~~~D~sTg~~~~~ 110 (132)
+...+|-|+|..+.+.+.+|+.|..+......
T Consensus 6 ~~s~~~~LsIris~dglSF~i~d~~~~~~~~~ 37 (257)
T 3hrg_A 6 TKSKQYTLSIRLSTDGFSFSIYNPINDNSQSL 37 (257)
T ss_dssp GGGGGSEEEEEECTTCEEEEEEETTTTEEEEE
T ss_pred CcccceEEEEEEcCCcEEEEEECCCCCceEEE
Confidence 45678999998887789999999998875443
No 30
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A
Probab=26.12 E-value=36 Score=24.10 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.6
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|......+++.|-++|++++|+-
T Consensus 89 ~~~~~~e~l~~L~~~G~~l~ivT 111 (211)
T 2b82_A 89 PKEVARQLIDMHVRRGDAIFFVT 111 (211)
T ss_dssp ECHHHHHHHHHHHHHTCEEEEEE
T ss_pred CcHHHHHHHHHHHHCCCEEEEEc
Confidence 44456778999999999999994
No 31
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B*
Probab=25.90 E-value=45 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHcCCeEEEEe
Q psy13254 12 SYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 12 ~l~~y~~kLv~~G~kVaive 31 (132)
+.-.+++.|+++|+||.|.-
T Consensus 52 s~~~~~~~Ll~~girvlIy~ 71 (153)
T 1whs_B 52 SMLPIYRELIAAGLRIWVFS 71 (153)
T ss_dssp BCHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHhcCceEEEEe
Confidence 44578899999999999984
No 32
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=25.40 E-value=49 Score=20.06 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.6
Q ss_pred eeeeecCcCHHHHHHHHHHcCCeE
Q psy13254 4 AHSGFPEISYGKFAQTLVEKGYKV 27 (132)
Q Consensus 4 ~maGfP~~~l~~y~~kLv~~G~kV 27 (132)
.+.+|-...++...++|.++|.++
T Consensus 75 ~~~~~~v~d~~~~~~~l~~~G~~~ 98 (126)
T 2p25_A 75 RHLAFKVEHIEEVIAFLNEQGIET 98 (126)
T ss_dssp CCEEEECSCHHHHHHHHHHTTCCC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcc
Confidence 356677778999999999999886
No 33
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=25.40 E-value=24 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.3
Q ss_pred eeecCcCHHHHHHHHHHcCCeE
Q psy13254 6 SGFPEISYGKFAQTLVEKGYKV 27 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~kV 27 (132)
.|++..++..++++|.++|+=.
T Consensus 46 l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 46 FKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEE
T ss_pred HCcCHHHHHHHHHHHHHCCCeE
Confidence 5888899999999999999943
No 34
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=25.35 E-value=22 Score=21.33 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=18.5
Q ss_pred eeecCcCHHHHHHHHHHcCC
Q psy13254 6 SGFPEISYGKFAQTLVEKGY 25 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~ 25 (132)
.|++..++..++++|.+.|+
T Consensus 24 lgvs~~tv~r~L~~L~~~Gl 43 (81)
T 2htj_A 24 LAVTDYQARYYLLLLEKAGM 43 (81)
T ss_dssp HTSCHHHHHHHHHHHHHHTS
T ss_pred HCcCHHHHHHHHHHHHHCCC
Confidence 58889999999999999998
No 35
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Probab=25.27 E-value=64 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=21.4
Q ss_pred eeecCc--C--HHHHHHHHHHcCCeEEEEeecc
Q psy13254 6 SGFPEI--S--YGKFAQTLVEKGYKVARVEQTE 34 (132)
Q Consensus 6 aGfP~~--~--l~~y~~kLv~~G~kVaiveQ~e 34 (132)
=|++.+ . +..+++.|.++||+|...|+--
T Consensus 34 HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G 66 (251)
T 2wtm_A 34 HGFTGHSEERHIVAVQETLNEIGVATLRADMYG 66 (251)
T ss_dssp CCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cCCCcccccccHHHHHHHHHHCCCEEEEecCCC
Confidence 366666 3 4566778888999999999753
No 36
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=24.46 E-value=26 Score=21.51 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=18.5
Q ss_pred eeecCcCHHHHHHHHHHcCCe
Q psy13254 6 SGFPEISYGKFAQTLVEKGYK 26 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~k 26 (132)
.|++..++..++++|.++|+=
T Consensus 46 l~is~~tvs~~L~~L~~~Glv 66 (98)
T 3jth_A 46 LQLSQSALSQHLAWLRRDGLV 66 (98)
T ss_dssp HTCCHHHHHHHHHHHHHTTSE
T ss_pred HCcCHHHHHHHHHHHHHCCCe
Confidence 478888999999999999983
No 37
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.37 E-value=25 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=18.4
Q ss_pred eeecCcCHHHHHHHHHHcCC
Q psy13254 6 SGFPEISYGKFAQTLVEKGY 25 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~ 25 (132)
.|+|..++..++.+|.+.|+
T Consensus 41 Lgvs~~tV~~~L~~L~~~G~ 60 (77)
T 1qgp_A 41 LGTPKKEINRVLYSLAKKGK 60 (77)
T ss_dssp HCCCHHHHHHHHHHHHHHTS
T ss_pred HCcCHHHHHHHHHHHHHCCC
Confidence 58899999999999999998
No 38
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A
Probab=24.32 E-value=42 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=17.9
Q ss_pred eecCc----CHHHHHHHHHHcCCeEEEEeec
Q psy13254 7 GFPEI----SYGKFAQTLVEKGYKVARVEQT 33 (132)
Q Consensus 7 GfP~~----~l~~y~~kLv~~G~kVaiveQ~ 33 (132)
|.|.+ .+...++.|.++||-|+.+|.-
T Consensus 64 G~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~r 94 (259)
T 4ao6_A 64 GGTTHKKVEYIEQVAKLLVGRGISAMAIDGP 94 (259)
T ss_dssp --------CHHHHHHHHHHHTTEEEEEECCC
T ss_pred CCcccccchHHHHHHHHHHHCCCeEEeeccC
Confidence 55655 3556778899999999999864
No 39
>3r8s_X 50S ribosomal protein L28; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2i2v_X 2wwq_0* 3fik_X 3j01_X 3j0t_Z* 3j0w_Z* 3j0y_Z* 3j11_Z* 3j12_Z* 3j14_Z* 3j19_X 3oas_X 3oat_X* 2i2t_X* 3ofd_X 3ofc_X 3ofr_X* 3ofz_X* 3og0_X 3ofq_X ...
Probab=24.22 E-value=37 Score=21.03 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHcCCeE
Q psy13254 12 SYGKFAQTLVEKGYKV 27 (132)
Q Consensus 12 ~l~~y~~kLv~~G~kV 27 (132)
-+|.|+..|..+|.+|
T Consensus 62 Gld~~l~~~~~~g~~~ 77 (77)
T 3r8s_X 62 GIDTVLAELRARGEKY 77 (77)
T ss_dssp CHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHccCcC
Confidence 4899999999999875
No 40
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=24.22 E-value=53 Score=21.22 Aligned_cols=21 Identities=5% Similarity=0.109 Sum_probs=17.8
Q ss_pred cCHHHHHHHHHHcCCeEEEEe
Q psy13254 11 ISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 11 ~~l~~y~~kLv~~G~kVaive 31 (132)
......+++|.++|++++++-
T Consensus 27 ~~~~~~l~~l~~~Gi~~~iaT 47 (126)
T 1xpj_A 27 LDVIEQLREYHQLGFEIVIST 47 (126)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEe
Confidence 346678899999999999996
No 41
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=24.20 E-value=26 Score=21.53 Aligned_cols=21 Identities=5% Similarity=-0.134 Sum_probs=18.2
Q ss_pred eeecCcCHHHHHHHHHHcCCe
Q psy13254 6 SGFPEISYGKFAQTLVEKGYK 26 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~k 26 (132)
.|++..++..++++|.++|+=
T Consensus 53 l~is~~tv~~~L~~L~~~Glv 73 (96)
T 1y0u_A 53 LSLSKKQLDYHLKVLEAGFCI 73 (96)
T ss_dssp HTCCHHHHHHHHHHHHHTTSE
T ss_pred HCcCHHHHHHHHHHHHHCCCE
Confidence 478888999999999999983
No 42
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=24.14 E-value=71 Score=22.18 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=19.1
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|..-....+++|-++|++++|+-
T Consensus 51 ~~pg~~e~L~~L~~~G~~~~ivT 73 (211)
T 2gmw_A 51 FIDGVIDAMRELKKMGFALVVVT 73 (211)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCcCHHHHHHHHHHCCCeEEEEE
Confidence 44557788999999999999995
No 43
>4az3_B Lysosomal protective protein 20 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_B*
Probab=24.10 E-value=67 Score=21.80 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=18.0
Q ss_pred CcCHHHHHHHHHHcCCeEEEEe
Q psy13254 10 EISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 10 ~~~l~~y~~kLv~~G~kVaive 31 (132)
......|++.|+++|+||.|.-
T Consensus 49 ~~~~~~~~~~Ll~~girVliy~ 70 (155)
T 4az3_B 49 RSMNSQYLKLLSSQKYQILLYN 70 (155)
T ss_dssp SBCHHHHHHHHHTCCCEEEEEE
T ss_pred ccchHHHHHHHHHcCceEEEEe
Confidence 3456678999999999999983
No 44
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=23.20 E-value=30 Score=27.83 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=21.6
Q ss_pred eecCcCHHHHHHHHHHcCCeEEEEeec
Q psy13254 7 GFPEISYGKFAQTLVEKGYKVARVEQT 33 (132)
Q Consensus 7 GfP~~~l~~y~~kLv~~G~kVaiveQ~ 33 (132)
|-|+..+..+++.|-++|++++||-=.
T Consensus 255 g~~ypgv~e~L~~Lk~~Gi~laI~Snn 281 (387)
T 3nvb_A 255 GKAFTEFQEWVKKLKNRGIIIAVCSKN 281 (387)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred cccCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 344556788999999999999999633
No 45
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=23.10 E-value=29 Score=21.68 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.0
Q ss_pred eeecCcCHHHHHHHHHHcCCeE
Q psy13254 6 SGFPEISYGKFAQTLVEKGYKV 27 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~kV 27 (132)
.|++..++..++++|.++|+=.
T Consensus 44 l~is~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 44 LPVSRQAIAKHLNALQACGLVE 65 (114)
T ss_dssp SSSCHHHHHHHHHHHHHTTSEE
T ss_pred HCcCHHHHHHHHHHHHHCCCee
Confidence 5788889999999999999843
No 46
>1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A*
Probab=22.98 E-value=50 Score=24.57 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCeEEEEeecc
Q psy13254 15 KFAQTLVEKGYKVARVEQTE 34 (132)
Q Consensus 15 ~y~~kLv~~G~kVaiveQ~e 34 (132)
.++..|.++||.|..+|+..
T Consensus 87 ~~~~~l~~~G~~V~~~D~~G 106 (328)
T 1qlw_A 87 GWDEYFLRKGYSTYVIDQSG 106 (328)
T ss_dssp CHHHHHHHTTCCEEEEECTT
T ss_pred HHHHHHHHCCCeEEEECCCC
Confidence 38899999999999999874
No 47
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=22.70 E-value=2e+02 Score=20.07 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=31.5
Q ss_pred EEEEEecCCEEEEEEEECCcc---eE---EEEEEeCh----------hhHHHHHHhhccCCCC
Q psy13254 85 LLGVTKEGDRLGVCFIDTTIG---EF---HVGEFEDD----------KQFSRLSTLMSHYPPC 131 (132)
Q Consensus 85 llai~~~~~~~Gi~~~D~sTg---~~---~~~~~~d~----------~~~~~L~t~l~~~~P~ 131 (132)
+|+|..+-...|++++|...+ .+ .++.+.-+ ..++.|..+|.+++|.
T Consensus 3 ILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd 65 (166)
T 4ep4_A 3 VAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPE 65 (166)
T ss_dssp EEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 567765556889999998877 54 33444321 2356788888888885
No 48
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=22.26 E-value=30 Score=20.84 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=18.9
Q ss_pred eeecCcCHHHHHHHHHHcCCeE
Q psy13254 6 SGFPEISYGKFAQTLVEKGYKV 27 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~kV 27 (132)
.|++..++..++++|.++|+=.
T Consensus 40 l~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 40 LDLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEE
Confidence 4788889999999999999843
No 49
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=21.88 E-value=72 Score=20.55 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=43.0
Q ss_pred cCHHHHHHHHHHcCCeEEEEeeccChhhhhhhhccCCCCCCCCeEEeeeeEEEccceeeccccccccCCCCcceEEEEEe
Q psy13254 11 ISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRGAQTFSIMDVDANYVDNKFLLGVTK 90 (132)
Q Consensus 11 ~~l~~y~~kLv~~G~kVaiveQ~e~~~~~~~r~k~~~~~~~~~~v~Rev~~I~TpGT~~~~~~~~~l~~~~~~yllai~~ 90 (132)
...+..+++|+..||+= +++.+.+.+ --++-.+..|+.+|. + +..+=+-+ .
T Consensus 23 i~~~~l~~~L~~~GY~r--~~~v~~~Ge--------------f~vRG~iiDIfp~~~--~----------~~pvRIef-f 73 (106)
T 3fpn_B 23 IERNALLRRLVDIQYDR--NDIDFRRGT--------------FRVRGDVVEIFPASR--D----------EHCIRVEF-F 73 (106)
T ss_dssp CCHHHHHHHHHHTTCEE--CTTCCCTTE--------------EEEETTEEEEECSST--T----------CCEEEEEE-E
T ss_pred cCHHHHHHHHHHcCCEE--CCccCCcEE--------------EEEECCEEEEecCCC--C----------CceEEEEE-E
Confidence 35788899999999963 355555532 246667778877642 1 11222222 2
Q ss_pred cCCEEEEEEEECCcceEE
Q psy13254 91 EGDRLGVCFIDTTIGEFH 108 (132)
Q Consensus 91 ~~~~~Gi~~~D~sTg~~~ 108 (132)
++.-=.|..+|+.|+...
T Consensus 74 gdeIesIr~fD~~tq~s~ 91 (106)
T 3fpn_B 74 GDEIERIREVDALTGEVL 91 (106)
T ss_dssp TTEEEEEEEECTTTCCEE
T ss_pred CCEEeEEEEECcccCcEe
Confidence 333447889999998765
No 50
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=21.88 E-value=69 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=19.0
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|..-+...+++|-++|++++|+-
T Consensus 78 ~~pg~~~~l~~L~~~g~~~~ivS 100 (236)
T 2fea_A 78 IREGFREFVAFINEHEIPFYVIS 100 (236)
T ss_dssp BCTTHHHHHHHHHHHTCCEEEEE
T ss_pred CCccHHHHHHHHHhCCCeEEEEe
Confidence 45567778999999999999995
No 51
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=21.85 E-value=34 Score=20.32 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.5
Q ss_pred ecCcCHHHHHHHHHHcCCe
Q psy13254 8 FPEISYGKFAQTLVEKGYK 26 (132)
Q Consensus 8 fP~~~l~~y~~kLv~~G~k 26 (132)
+...++...+++|.++|+=
T Consensus 39 ~s~~Tv~~~l~rL~~kGlv 57 (82)
T 1p6r_A 39 WSPKTIQTMLLRLIKKGAL 57 (82)
T ss_dssp CCHHHHHHHHHHHHHTTSE
T ss_pred ccHHHHHHHHHHHHHCCCe
Confidence 4567888999999999973
No 52
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A*
Probab=21.66 E-value=62 Score=23.39 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=21.1
Q ss_pred eecCcC--HHHHHHHHHHcCCeEEEEeeccC
Q psy13254 7 GFPEIS--YGKFAQTLVEKGYKVARVEQTES 35 (132)
Q Consensus 7 GfP~~~--l~~y~~kLv~~G~kVaiveQ~e~ 35 (132)
|+|.+. ....+..|.++||+|...|+---
T Consensus 39 G~~~~~~~w~~~~~~L~~~g~~via~Dl~G~ 69 (328)
T 2cjp_A 39 GFPELWYSWRHQMVYLAERGYRAVAPDLRGY 69 (328)
T ss_dssp CTTCCGGGGHHHHHHHHTTTCEEEEECCTTS
T ss_pred CCCCchHHHHHHHHHHHHCCcEEEEECCCCC
Confidence 777654 34456667778999999998653
No 53
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=21.53 E-value=30 Score=25.04 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=28.2
Q ss_pred EEEEEEECCcceEEEEEEeChh---hHHHHHHhhccCCCC
Q psy13254 95 LGVCFIDTTIGEFHVGEFEDDK---QFSRLSTLMSHYPPC 131 (132)
Q Consensus 95 ~Gi~~~D~sTg~~~~~~~~d~~---~~~~L~t~l~~~~P~ 131 (132)
.-+..+|..||++.+-.+.... .-..|...|.++.|+
T Consensus 141 ~~lIsv~N~sGeV~LE~~G~~~~~vLA~sLaeFL~~L~P~ 180 (181)
T 3ffv_A 141 LEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPL 180 (181)
T ss_dssp TEEEEEETTTCCEEEEETTSSCEEEEESSHHHHHHHCEEC
T ss_pred CcEEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCccC
Confidence 4577889999999998886332 234688899988885
No 54
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=21.48 E-value=32 Score=20.82 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=18.4
Q ss_pred eeecCcCHHHHHHHHHHcCC
Q psy13254 6 SGFPEISYGKFAQTLVEKGY 25 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~ 25 (132)
.|++..++...+++|.++|+
T Consensus 44 l~is~~tv~~~l~~L~~~gl 63 (109)
T 1sfx_A 44 LDLSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp HTCCHHHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHHHCCC
Confidence 57888999999999999999
No 55
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=21.43 E-value=32 Score=21.58 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=19.8
Q ss_pred eeecCcCHHHHHHHHHHcCCeEE
Q psy13254 6 SGFPEISYGKFAQTLVEKGYKVA 28 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~kVa 28 (132)
.|++..++..++++|.++|+=..
T Consensus 49 l~is~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 49 LNLSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HCcCHHHHHHHHHHHHHCCCeEE
Confidence 57888999999999999998543
No 56
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=21.30 E-value=88 Score=21.29 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.8
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|..-....++.|-++|++++|+-
T Consensus 87 ~~~g~~~~l~~L~~~g~~~~i~T 109 (225)
T 1nnl_A 87 LTPGIRELVSRLQERNVQVFLIS 109 (225)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCccHHHHHHHHHHCCCcEEEEe
Confidence 34457778899999999999995
No 57
>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0
Probab=21.27 E-value=52 Score=20.05 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=17.7
Q ss_pred eeeeecCcCHHHHHHHHHHcCCeE
Q psy13254 4 AHSGFPEISYGKFAQTLVEKGYKV 27 (132)
Q Consensus 4 ~maGfP~~~l~~y~~kLv~~G~kV 27 (132)
.|.+|-...++...++|.++|.++
T Consensus 79 ~hi~~~v~d~~~~~~~l~~~G~~~ 102 (134)
T 3rmu_A 79 HHICIEVDNINAAVMDLKKKKIRS 102 (134)
T ss_dssp EEEEEEESCHHHHHHHHHHTTCTT
T ss_pred eEEEEEcCCHHHHHHHHHHcCCcc
Confidence 455666667888888888888776
No 58
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=21.22 E-value=71 Score=23.16 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.1
Q ss_pred HHHHHHHcCCeEEEEeeccC
Q psy13254 16 FAQTLVEKGYKVARVEQTES 35 (132)
Q Consensus 16 y~~kLv~~G~kVaiveQ~e~ 35 (132)
-+++|.++|++|+++.-.+.
T Consensus 24 iA~~la~~Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 24 VAKVLDQLGAKLVFTYRKER 43 (256)
T ss_dssp HHHHHHHTTCEEEEEESSGG
T ss_pred HHHHHHHCCCEEEEEECCHH
Confidence 46788899999999976543
No 59
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=21.22 E-value=59 Score=24.06 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.8
Q ss_pred HHHHHHHcCCeEEEEeecc
Q psy13254 16 FAQTLVEKGYKVARVEQTE 34 (132)
Q Consensus 16 y~~kLv~~G~kVaiveQ~e 34 (132)
-+++|.++|++|++++--+
T Consensus 18 ia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 18 ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp HHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHCCCEEEEEeCCH
Confidence 4678999999999998544
No 60
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=20.94 E-value=66 Score=21.89 Aligned_cols=21 Identities=5% Similarity=-0.183 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHHcCCeEEEEe
Q psy13254 11 ISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 11 ~~l~~y~~kLv~~G~kVaive 31 (132)
...-..+++|.++|++|++|-
T Consensus 27 ~~~~~al~~l~~~G~~iii~T 47 (142)
T 2obb_A 27 PFAVETLKLLQQEKHRLILWS 47 (142)
T ss_dssp TTHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 466788999999999999995
No 61
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=20.70 E-value=33 Score=21.98 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=18.4
Q ss_pred eeecCcCHHHHHHHHHHcCC
Q psy13254 6 SGFPEISYGKFAQTLVEKGY 25 (132)
Q Consensus 6 aGfP~~~l~~y~~kLv~~G~ 25 (132)
.|+|..++...+++|.++||
T Consensus 51 l~~~~stvs~~l~~L~~~G~ 70 (152)
T 1ku9_A 51 LKISKGNVSMSLKKLEELGF 70 (152)
T ss_dssp HTCCHHHHHHHHHHHHHTTS
T ss_pred HCcCHHHHHHHHHHHHHCCC
Confidence 57888999999999999999
No 62
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.65 E-value=62 Score=20.78 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=19.0
Q ss_pred eeeeecCcCHHH-HHHHHHHcCCeEEEEeeccC
Q psy13254 4 AHSGFPEISYGK-FAQTLVEKGYKVARVEQTES 35 (132)
Q Consensus 4 ~maGfP~~~l~~-y~~kLv~~G~kVaiveQ~e~ 35 (132)
-.+|. -.+-. -++.|.++|++|.++|.-+.
T Consensus 10 ~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~ 40 (141)
T 3llv_A 10 IVIGS--EAAGVGLVRELTAAGKKVLAVDKSKE 40 (141)
T ss_dssp EEECC--SHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred EEECC--CHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 34554 22444 44566678999999997543
No 63
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=20.49 E-value=49 Score=25.43 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=14.0
Q ss_pred HHHHHHcCCeEEEEeecc
Q psy13254 17 AQTLVEKGYKVARVEQTE 34 (132)
Q Consensus 17 ~~kLv~~G~kVaiveQ~e 34 (132)
+.+|.++|++|+|+|.-.
T Consensus 17 A~~L~~~G~~V~vlE~~~ 34 (431)
T 3k7m_X 17 ARDLTNAGKKVLLLEGGE 34 (431)
T ss_dssp HHHHHHTTCCEEEECSSS
T ss_pred HHHHHHcCCeEEEEecCC
Confidence 456778899999999644
No 64
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=20.48 E-value=50 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.0
Q ss_pred HHHHHcCCeEEEEeecc
Q psy13254 18 QTLVEKGYKVARVEQTE 34 (132)
Q Consensus 18 ~kLv~~G~kVaiveQ~e 34 (132)
..|.++|++|+|+|+-.
T Consensus 21 ~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 21 RALAAGGHEVLVAEAAE 37 (369)
T ss_dssp HHHHHTTCCEEEECSSS
T ss_pred HHHHhCCCeEEEEeCCC
Confidence 45677999999999864
No 65
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Probab=20.29 E-value=56 Score=23.03 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=20.1
Q ss_pred eecCcC--HHHHHHHHHHcCCeEEEEeecc
Q psy13254 7 GFPEIS--YGKFAQTLVEKGYKVARVEQTE 34 (132)
Q Consensus 7 GfP~~~--l~~y~~kLv~~G~kVaiveQ~e 34 (132)
|++..+ .+..+..|.++||+|...|+--
T Consensus 18 G~~~~~~~w~~~~~~L~~~g~~via~Dl~G 47 (264)
T 2wfl_A 18 GGCLGAWIWYKLKPLLESAGHKVTAVDLSA 47 (264)
T ss_dssp CTTCCGGGGTTHHHHHHHTTCEEEEECCTT
T ss_pred CCccccchHHHHHHHHHhCCCEEEEeecCC
Confidence 666444 3445677778899999999764
No 66
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=20.24 E-value=69 Score=22.22 Aligned_cols=23 Identities=17% Similarity=-0.050 Sum_probs=18.8
Q ss_pred cCcCHHHHHHHHHHcCCeEEEEe
Q psy13254 9 PEISYGKFAQTLVEKGYKVARVE 31 (132)
Q Consensus 9 P~~~l~~y~~kLv~~G~kVaive 31 (132)
|..-....+++|-++|++++|+-
T Consensus 57 ~~~g~~e~L~~L~~~G~~~~i~T 79 (218)
T 2o2x_A 57 LRPQMLPAIATANRAGIPVVVVT 79 (218)
T ss_dssp BCGGGHHHHHHHHHHTCCEEEEE
T ss_pred ECcCHHHHHHHHHHCCCEEEEEc
Confidence 44456778999999999999994
No 67
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Probab=20.17 E-value=92 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCeEEEEeec
Q psy13254 13 YGKFAQTLVEKGYKVARVEQT 33 (132)
Q Consensus 13 l~~y~~kLv~~G~kVaiveQ~ 33 (132)
+..+++.|.++||.|..+|.-
T Consensus 64 ~~~~~~~l~~~G~~v~~~d~~ 84 (270)
T 3pfb_A 64 LREIANSLRDENIASVRFDFN 84 (270)
T ss_dssp HHHHHHHHHHTTCEEEEECCT
T ss_pred HHHHHHHHHhCCcEEEEEccc
Confidence 667788888999999999975
Done!