Your job contains 1 sequence.
>psy13254
NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC
KITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSR
LSTLMSHYPPCR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13254
(132 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 358 2.3e-31 1
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 352 9.6e-31 1
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 352 9.7e-31 1
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 351 1.3e-30 1
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 349 1.6e-30 1
UNIPROTKB|I3LUG7 - symbol:LOC100624532 "Uncharacterized p... 346 2.6e-30 1
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 345 3.6e-30 1
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 346 4.1e-30 1
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 346 4.3e-30 1
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 345 4.7e-30 1
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 345 4.9e-30 1
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 345 5.0e-30 1
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 345 5.4e-30 1
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 341 1.5e-29 1
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 255 1.8e-20 1
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 255 1.8e-20 1
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 198 2.4e-14 1
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 182 1.2e-12 1
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 175 6.3e-12 1
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 159 3.2e-10 1
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 157 5.1e-10 1
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 155 8.7e-10 1
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 153 1.3e-09 1
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 153 1.3e-09 1
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 153 1.4e-09 1
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 128 3.9e-07 1
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 130 3.9e-07 1
UNIPROTKB|Q23AD6 - symbol:TTHERM_00426230 "MutS domain II... 126 9.5e-07 1
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 118 7.0e-06 1
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 113 1.9e-05 1
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 111 4.2e-05 1
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 105 0.00013 1
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 104 0.00023 1
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 358 (131.1 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 68/139 (48%), Positives = 97/139 (69%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQK-QRVVRREICK 61
+AHSGFPEI +G+F+ LV+KGYKVARVEQTE+ + M+ R K+ P K +VV+RE+C+
Sbjct: 455 WAHSGFPEIGFGRFSDVLVQKGYKVARVEQTETPDMMEARCKKLARPTKFDKVVKREVCR 514
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGV--------TKEGDRLGVCFIDTTIGEFHVGEFE 113
I RG QT+S++D + +K+LL + T G GVCFIDT++G FH+G+F+
Sbjct: 515 IITRGTQTYSVLDGAPSETQSKYLLSIKEKSEEDSTGHGHIYGVCFIDTSVGRFHIGQFQ 574
Query: 114 DDKQFSRLSTLMSHYPPCR 132
DD+ SRL TL++HY P +
Sbjct: 575 DDRHCSRLRTLVAHYSPAQ 593
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 352 (129.0 bits), Expect = 9.6e-31, P = 9.6e-31
Identities = 71/134 (52%), Positives = 96/134 (71%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQK-QRVVRREICK 61
+AHSGFPE ++G+F+ LV+KGYK+ARVEQTE+ E M+ R K K +VVRREIC+
Sbjct: 439 WAHSGFPETAFGRFSAILVQKGYKIARVEQTETPEMMEARCKATAHTTKFDKVVRREICR 498
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KE---GDRL-GVCFIDTTIGEFHVGEFEDDK 116
I +G QT+SI+D D NK+LL V KE G R+ GVCF+DT++G+F+VG+F DD+
Sbjct: 499 IITKGTQTYSIIDCDPTENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDR 558
Query: 117 QFSRLSTLMSHYPP 130
SR TL++HY P
Sbjct: 559 HCSRFRTLVAHYTP 572
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 352 (129.0 bits), Expect = 9.7e-31, P = 9.7e-31
Identities = 71/134 (52%), Positives = 96/134 (71%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQK-QRVVRREICK 61
+AHSGFPE ++G+F+ LV+KGYK+ARVEQTE+ E M+ R K K +VVRREIC+
Sbjct: 455 WAHSGFPETAFGRFSAILVQKGYKIARVEQTETPEMMEARCKATAHTTKFDKVVRREICR 514
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KE---GDRL-GVCFIDTTIGEFHVGEFEDDK 116
I +G QT+SI+D D NK+LL V KE G R+ GVCF+DT++G+F+VG+F DD+
Sbjct: 515 IITKGTQTYSIIDCDPTENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDR 574
Query: 117 QFSRLSTLMSHYPP 130
SR TL++HY P
Sbjct: 575 HCSRFRTLVAHYTP 588
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 351 (128.6 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 69/136 (50%), Positives = 100/136 (73%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+F+ +LV+KGYKVARVEQTE+ E M+ R ++ V + RVVRREIC+
Sbjct: 458 WAHSGFPEIAFGRFSDSLVQKGYKVARVEQTETPEMMEARCRKMAHVSKFDRVVRREICR 517
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGDR------LGVCFIDTTIGEFHVGEFED 114
I +G QT+S++D D + +++LL + KE D GVCF+DT++G+F +G+F D
Sbjct: 518 IITKGTQTYSVLDGDPSENYSRYLLSLKEKEEDSSGHMRAYGVCFVDTSLGKFFLGQFSD 577
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SRL TL++HYPP
Sbjct: 578 DRHCSRLRTLVAHYPP 593
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 349 (127.9 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 75/133 (56%), Positives = 93/133 (69%)
Query: 2 EYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICK 61
E+AHSGFPEIS+ K + LV++G+KVARVEQTE+ + M R KR K + +VV REIC+
Sbjct: 310 EFAHSGFPEISFDKMSTILVDRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREICQ 369
Query: 62 ITCRGAQTF-SIMDVDANYVDNKFLLGVTK-EG--DRLGVCFIDTTIGEFHVGEFEDDKQ 117
IT RG Q F S + N+ N L V K EG R GVCFIDT+IG+FH+GEFEDDK
Sbjct: 370 ITNRGTQVFGSQCKIGPNHQPNYMLAIVEKDEGTCSRYGVCFIDTSIGDFHLGEFEDDKN 429
Query: 118 FSRLSTLMSHYPP 130
SRL TL+SH+ P
Sbjct: 430 CSRLLTLVSHHMP 442
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 346 (126.9 bits), Expect = 2.6e-30, P = 2.6e-30
Identities = 66/136 (48%), Positives = 101/136 (74%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 306 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 365
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGD-----RL-GVCFIDTTIGEFHVGEFED 114
+ +G QT+S+++ D + +K+LL + KE D R+ GVCF+DT++G+F +G+F D
Sbjct: 366 VITKGTQTYSVLEGDPSENYSKYLLSLKEKEDDSSGHTRVYGVCFVDTSLGKFFIGQFSD 425
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 426 DRHCSRFRTLVAHYPP 441
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 345 (126.5 bits), Expect = 3.6e-30, P = 3.6e-30
Identities = 66/136 (48%), Positives = 99/136 (72%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 154 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 213
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGDR------LGVCFIDTTIGEFHVGEFED 114
I +G QT+S+++ D + +K+LL + KE D GVCF+DT++G+F +G+F D
Sbjct: 214 IITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSD 273
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 274 DRHCSRFRTLVAHYPP 289
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 346 (126.9 bits), Expect = 4.1e-30, P = 4.1e-30
Identities = 66/136 (48%), Positives = 101/136 (74%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 431 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 490
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGD-----RL-GVCFIDTTIGEFHVGEFED 114
+ +G QT+S+++ D + +K+LL + KE D R+ GVCF+DT++G+F +G+F D
Sbjct: 491 VITKGTQTYSVLEGDPSENYSKYLLSLKEKEDDSSGHTRVYGVCFVDTSLGKFFIGQFSD 550
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 551 DRHCSRFRTLVAHYPP 566
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 346 (126.9 bits), Expect = 4.3e-30, P = 4.3e-30
Identities = 68/136 (50%), Positives = 101/136 (74%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+F+ +LV+KGYKVARVEQTE+ E M+ R ++ V + RVVRREIC+
Sbjct: 455 WAHSGFPEIAFGRFSDSLVQKGYKVARVEQTETPEMMEARCRKMAHVSKFDRVVRREICR 514
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGD-----RL-GVCFIDTTIGEFHVGEFED 114
I +G QT+S++D D + +++LL + KE + R+ GVCF+DT++G+F +G+F D
Sbjct: 515 IITKGTQTYSVLDGDPSENYSRYLLSLKEKEEETSGHTRVYGVCFVDTSLGKFFIGQFSD 574
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 575 DRHCSRFRTLVAHYPP 590
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 345 (126.5 bits), Expect = 4.7e-30, P = 4.7e-30
Identities = 66/136 (48%), Positives = 99/136 (72%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 326 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 385
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGDR------LGVCFIDTTIGEFHVGEFED 114
I +G QT+S+++ D + +K+LL + KE D GVCF+DT++G+F +G+F D
Sbjct: 386 IITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSD 445
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 446 DRHCSRFRTLVAHYPP 461
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 345 (126.5 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 66/136 (48%), Positives = 101/136 (74%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 384 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 443
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGD-----RL-GVCFIDTTIGEFHVGEFED 114
+ +G QT+S+++ D + +K+LL + KE D R+ GVCF+DT++G+F +G+F D
Sbjct: 444 VITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSD 503
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 504 DRHCSRFRTLVAHYPP 519
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 345 (126.5 bits), Expect = 5.0e-30, P = 5.0e-30
Identities = 66/136 (48%), Positives = 101/136 (74%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 374 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 433
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGD-----RL-GVCFIDTTIGEFHVGEFED 114
+ +G QT+S+++ D + +K+LL + KE D R+ GVCF+DT++G+F +G+F D
Sbjct: 434 VITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSD 493
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 494 DRHCSRFRTLVAHYPP 509
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 345 (126.5 bits), Expect = 5.4e-30, P = 5.4e-30
Identities = 66/136 (48%), Positives = 99/136 (72%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 456 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 515
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGDR------LGVCFIDTTIGEFHVGEFED 114
I +G QT+S+++ D + +K+LL + KE D GVCF+DT++G+F +G+F D
Sbjct: 516 IITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSD 575
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 576 DRHCSRFRTLVAHYPP 591
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 341 (125.1 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 66/136 (48%), Positives = 100/136 (73%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQRVVRREICK 61
+AHSGFPEI++G+++ +LV+KGYKVARVEQTE+ E M+ R ++ + + RVVRREIC+
Sbjct: 455 WAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 514
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGD-----RL-GVCFIDTTIGEFHVGEFED 114
I +G QT+S+++ D + +K+LL + KE + R+ GVCF+DT++G F +G+F D
Sbjct: 515 IITKGTQTYSVLEGDPSENYSKYLLSLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSD 574
Query: 115 DKQFSRLSTLMSHYPP 130
D+ SR TL++HYPP
Sbjct: 575 DRHCSRFRTLVAHYPP 590
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 255 (94.8 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 56/138 (40%), Positives = 85/138 (61%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKI 62
YAH+GFPE + KFA L+ GYKVAR+EQTE+ + ++ R ++ K K++VVRRE+C++
Sbjct: 300 YAHAGFPEHAASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKT--KEKVVRREVCRV 357
Query: 63 TCRGAQTFSIMD-VDANYVDN------KFLLGVTK----EGDR--LGVCFIDTTIGEFHV 109
T G +T+ ++D VD + K LL + + E + GVC IDTT +
Sbjct: 358 TSNGTRTYGVLDGVDLGSASSTLDPTAKHLLAIKEFHNPETGKSSYGVCMIDTTTAHIRI 417
Query: 110 GEFEDDKQFSRLSTLMSH 127
G+FEDD S+L TL+++
Sbjct: 418 GQFEDDDYRSQLRTLLAN 435
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 255 (94.8 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 56/138 (40%), Positives = 85/138 (61%)
Query: 3 YAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKI 62
YAH+GFPE + KFA L+ GYKVAR+EQTE+ + ++ R ++ K K++VVRRE+C++
Sbjct: 300 YAHAGFPEHAASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKT--KEKVVRREVCRV 357
Query: 63 TCRGAQTFSIMD-VDANYVDN------KFLLGVTK----EGDR--LGVCFIDTTIGEFHV 109
T G +T+ ++D VD + K LL + + E + GVC IDTT +
Sbjct: 358 TSNGTRTYGVLDGVDLGSASSTLDPTAKHLLAIKEFHNPETGKSSYGVCMIDTTTAHIRI 417
Query: 110 GEFEDDKQFSRLSTLMSH 127
G+FEDD S+L TL+++
Sbjct: 418 GQFEDDDYRSQLRTLLAN 435
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 198 (74.8 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 49/138 (35%), Positives = 76/138 (55%)
Query: 2 EYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICK 61
E H GFPE ++ + LV KGY+V VEQTE+ +Q++ R K + K +VV+RE+C
Sbjct: 428 EQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRK--ETGSKDKVVKREVCA 485
Query: 62 ITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRL---------GVCFIDTTIGEFHVGEF 112
+ +G T M + N D +L+ +T+ G+ L GVC +D + +G+F
Sbjct: 486 VVTKGTLTDGEMLL-TN-PDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQF 543
Query: 113 EDDKQFSRLSTLMSHYPP 130
+DD+ S LS L+S P
Sbjct: 544 KDDQDCSALSCLLSEMRP 561
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 182 (69.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 42/127 (33%), Positives = 69/127 (54%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G PE S+ +A + KGY++ARV+Q E+A +I+ R + ++++VV+R + ++ G
Sbjct: 429 GIPEASFDYWASQFIAKGYRIARVDQLETALGKEIKD-RQRTQKEEKVVQRGLTQVLTSG 487
Query: 67 AQTFSIM---DVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
M D+ + K L E G+CFIDT+ G FH+ EF DD ++L T
Sbjct: 488 TLVDEAMLTSDLSTYCMAIKESLQSDNEEPSFGICFIDTSTGGFHMCEFTDDIHRTKLDT 547
Query: 124 LMSHYPP 130
L++ P
Sbjct: 548 LLTQVRP 554
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 175 (66.7 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 41/125 (32%), Positives = 61/125 (48%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G PE S + V KGYKVARV+Q ESA ++R + K + +++RRE+ I G
Sbjct: 405 GVPESSLDMWVNQFVAKGYKVARVDQMESALGKEMRERDTKAKKADKIIRRELTCILTGG 464
Query: 67 AQTFSIMDVDANYVDNKFLL-GVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTLM 125
M D N V + V + G+ F+D G+F + EFEDD ++ T +
Sbjct: 465 TLVDGSMLQDDNAVYCAAIKESVVDDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFV 524
Query: 126 SHYPP 130
+ P
Sbjct: 525 AQTSP 529
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 159 (61.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 39/126 (30%), Positives = 65/126 (51%)
Query: 5 HSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITC 64
H+GFPE + K A L+ GYKVA EQTE+ EQM R R+K K V RE+ ++
Sbjct: 316 HTGFPEKALDKMASKLISLGYKVAVAEQTETPEQMKQRLMREKSGPK--CVSRELVQVMT 373
Query: 65 RGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLSTL 124
+G T+ + + +Y ++L+ + + G+ ++++ V DD F++ TL
Sbjct: 374 KG--TYD-QNNETDY-QPRYLMSLRNFQTKFGIIIVESSTNVITVAYLNDDIHFTQFKTL 429
Query: 125 MSHYPP 130
+ P
Sbjct: 430 LCQVKP 435
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 157 (60.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 40/130 (30%), Positives = 73/130 (56%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCR 65
+G PE+S+ +A+ + GYKVA+VEQ ES M ++ R ++++++ RE+ I
Sbjct: 371 AGIPEMSFEYWAKEFISHGYKVAKVEQKES---MLVKQMRGGATKEEKIIERELKGILTA 427
Query: 66 GAQTFSIMDVDANYVDNKFLLGVTKE----GDR-LGVCFIDTTIGEFHVGEFEDDKQFSR 120
G T + +D+ +N + + L + +E G + GV F+DT E + E +DD + ++
Sbjct: 428 G--TLTNLDMISNDMAT-YCLSIKEEDKEDGTKTFGVAFVDTATSELNFIELDDDAECTK 484
Query: 121 LSTLMSHYPP 130
L TL++ P
Sbjct: 485 LDTLITQINP 494
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 155 (59.6 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIR-TKRDKVPQKQRVVRREICKITCR 65
G PE+S+ +A L+ G+KVA+V+Q E++ M R ++ +K +++RE+ I
Sbjct: 415 GVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTA 474
Query: 66 GAQTFSIMDVDANYVDNKFLLGVTK-EGDR-LGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
G M D + +L+ + + E D+ GVCF+D +IGEF++ +DD + T
Sbjct: 475 GTLLDEQMITDQT---STYLMAIKENEYDKQYGVCFVDVSIGEFYLCTIQDDDNRMQFET 531
Query: 124 LMSHYPP 130
L+ P
Sbjct: 532 LLLQMMP 538
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 153 (58.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 36/127 (28%), Positives = 66/127 (51%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVP--QKQRVVRREI-CKIT 63
G PE S +A V KG+K+ARV+Q+ESA ++R + K ++++++RRE+ C +T
Sbjct: 346 GVPESSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKGGGKEEKIIRRELACVLT 405
Query: 64 CRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
+++ D + + + G+ F+DT G+F + EF DD ++ T
Sbjct: 406 AGTLVEGAMLQDDMSTFCVAIKEAIIENLPAFGIAFVDTATGQFFLTEFVDDVDMTKFET 465
Query: 124 LMSHYPP 130
++ P
Sbjct: 466 FVAQTRP 472
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 153 (58.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 36/127 (28%), Positives = 66/127 (51%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVP--QKQRVVRREI-CKIT 63
G PE S +A V KG+K+ARV+Q+ESA ++R + K ++++++RRE+ C +T
Sbjct: 346 GVPESSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKGGGKEEKIIRRELACVLT 405
Query: 64 CRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
+++ D + + + G+ F+DT G+F + EF DD ++ T
Sbjct: 406 AGTLVEGAMLQDDMSTFCVAIKEAIIENLPAFGIAFVDTATGQFFLTEFVDDVDMTKFET 465
Query: 124 LMSHYPP 130
++ P
Sbjct: 466 FVAQTRP 472
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 39/127 (30%), Positives = 62/127 (48%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKR-DKVPQKQ-RVVRREI-CKIT 63
G PE S + V KGYKVARV+Q ESA ++R + DK +K+ +++RRE+ C +T
Sbjct: 382 GVPEASLDIWVNQFVAKGYKVARVDQMESALGKEMRERGGDKKNKKEDKIIRRELACILT 441
Query: 64 CRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQFSRLST 123
S++ D G+ F+D G+F + +FEDD ++ T
Sbjct: 442 GGTLVEGSMLQDDMATFCVAIKESTINNHPAFGIAFVDAATGQFFISQFEDDVDLTKFET 501
Query: 124 LMSHYPP 130
++ P
Sbjct: 502 FVAQTSP 508
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 128 (50.1 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G P S + LV+ GYKVA EQ E+AE+ R+ R +VRRE+ +I G
Sbjct: 63 GVPYHSSESYIGRLVKSGYKVAVCEQIETAEEARKRSVR-------ALVRREVTRIVTPG 115
Query: 67 AQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHV--GEFED-DKQFSRL 121
+ +DA +N +L ++ G+R GV +++ + G FHV + ED D + RL
Sbjct: 116 TLVEDSL-LDAK--ENNYLACISNIGERYGVAWMELSTGLFHVRASKLEDLDSEIQRL 170
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 130 (50.8 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 43/136 (31%), Positives = 68/136 (50%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTES--AEQMDIRTKRDKVPQKQRVVRREICK-- 61
+G PE+S+ +A ++ GYKVA+V+Q ES A++M +K + Q ++
Sbjct: 367 AGIPEMSFEYWAAQFIQMGYKVAKVDQRESMLAKEMREGSKGIVKRELQCILTSGTLTDG 426
Query: 62 -ITCRGAQTF--SIMDVDANYVDNKFLLGVT---KEGDRL-GVCFIDTTIGEFHVGEFED 114
+ TF +I + N+ + L T K ++ G FIDT GE + EFED
Sbjct: 427 DMLHSDLATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFED 486
Query: 115 DKQFSRLSTLMSHYPP 130
D + ++L TLMS P
Sbjct: 487 DSECTKLDTLMSQVRP 502
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 126 (49.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 40/126 (31%), Positives = 61/126 (48%)
Query: 1 NEYAHSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREIC 60
N+ H GFPE + KFA LV+ GYKV VEQT +T +V R+I
Sbjct: 272 NKELHCGFPEKALEKFASKLVQFGYKVVVVEQTSK------KTTTG-------IVDRDIT 318
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLGVT-KEGDRLGVCFIDTTIGEFHVGEFEDDKQFS 119
+I +G F+ + N+ D K+LL + K G+ ++ + VG +DDK +
Sbjct: 319 QIITKGTINFTFEE--QNH-DPKYLLVIRQKTNQEFGIIVYESFTSKIQVGLLQDDKTQT 375
Query: 120 RLSTLM 125
RL + +
Sbjct: 376 RLKSFL 381
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 118 (46.6 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQK--QRVVRREIC--- 60
+G PE+S+ +A ++ GYKVA+V+Q ES ++R + ++ Q V+
Sbjct: 296 AGIPEMSFDYWASQFIQHGYKVAKVDQKESMLAKEMREGNKGIVERELQCVLSGGTLTDL 355
Query: 61 KITCRGAQTFSIMDVDANYVDNKFLLG------VTKEGDRLGVCFIDTTIGEFHVGEFED 114
K+ T+ + +A G ++G G FIDT G + EFED
Sbjct: 356 KMLHSDQSTYCLSIHEAPLALYAMERGEAVPPEAQQQGRLFGTAFIDTATGRICLLEFED 415
Query: 115 DKQFSRLSTLMSHYPP 130
D + ++L TLM+ P
Sbjct: 416 DSECTQLDTLMAQVRP 431
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 113 (44.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 34/133 (25%), Positives = 57/133 (42%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQM--DIRTKR------DKVPQKQRVVRR 57
+G P + ++ L+ +GY+VA EQ E M D R + V ++V+R
Sbjct: 74 AGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPVESSGKMVQR 133
Query: 58 EICKITCRGAQTFSIMDVDANYVDNKFLLGVTKEGDRLGVCFIDTTIGEFHVGEFEDDKQ 117
I ++ G M D N +L V E ++G+ + D + GEF EF D +
Sbjct: 134 AIVRVITPGTVIDPAMLPDRT---NNYLAAVIVEQGKVGLAYADLSTGEFAAAEFTDARA 190
Query: 118 FSRLSTLMSHYPP 130
+L ++ P
Sbjct: 191 LMQLQAELARLSP 203
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 111 (44.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 5 HSGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITC 64
H GFPE S +A+ ++ G+KV +EQ E+ ++++ R K P K + ++REI +I
Sbjct: 353 HLGFPEQSLHLYAKKVINSGHKVVVIEQMETPKELEQRNKTSSGP-KDKAIKREINEIYT 411
Query: 65 RGAQTF-SIMDVDANYV 80
+G +++ + Y+
Sbjct: 412 KGTILHDNMLSAETKYI 428
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 40/137 (29%), Positives = 62/137 (45%)
Query: 6 SGFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQR-VVRREICKITC 64
+G P + + L+ KGYKVA EQ E P+K + VV+R + ++
Sbjct: 65 AGIPYHAIDTYLPRLINKGYKVAICEQLED-------------PKKAKGVVKRGVVRVVT 111
Query: 65 RGAQTFSIMDVDANYVDNKFLLGVT--------KEGDR---LGVCFIDTTIGEFHVGEFE 113
G S M DA+ N +L+ V K G++ G+ F+D + GEF +F
Sbjct: 112 PGTAIDSSMFSDAS---NNYLMAVAGREGGKSGKNGEKEMEFGISFLDISTGEFLTTQFT 168
Query: 114 DDKQFSRL-STLMSHYP 129
D + F +L S L +P
Sbjct: 169 DSENFDKLLSELARMHP 185
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 104 (41.7 bits), Expect = 0.00023, P = 0.00023
Identities = 33/125 (26%), Positives = 54/125 (43%)
Query: 7 GFPEISYGKFAQTLVEKGYKVARVEQTESAEQMDIRTKRDKVPQKQRVVRREICKITCRG 66
G E + L+ +GYKV R+EQ ESA+Q R V+ R++ ++
Sbjct: 460 GISESGIDVAVEKLLARGYKVGRIEQMESADQAKSRGSNS-------VILRKLVHVSTPS 512
Query: 67 AQTFSIMDVDANYVDNKFLLGVTKEGDRL-GVCFIDTTIGEFHVGEFEDDKQFSRLSTLM 125
S + DA ++ + + + G R+ G F+D + VG DD F+ L L+
Sbjct: 513 TVGDSNIGADAVHLLSLKEITLASNGSRVYGFAFLDYAALKIWVGSVHDDDTFAALGALL 572
Query: 126 SHYPP 130
P
Sbjct: 573 VQVSP 577
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 132 132 0.00091 102 3 11 22 0.39 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 552 (59 KB)
Total size of DFA: 124 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.29u 0.10s 13.39t Elapsed: 00:00:02
Total cpu time: 13.29u 0.10s 13.39t Elapsed: 00:00:02
Start: Thu Aug 15 15:44:04 2013 End: Thu Aug 15 15:44:06 2013