BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13255
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum
GN=msh6 PE=3 SV=1
Length = 1260
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
ILD L NL + NS D +TEGTL + +D C T+FGKRM R + +PL N +AI RQ
Sbjct: 645 ILDGQCLVNLEIFNNSTDGSTEGTLFKLMDRCTTAFGKRMFRQWICRPLANKNAIVDRQK 704
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L D +++ A + L DLERM+
Sbjct: 705 AIEFLRDSPETLQKVTAILNKLPDLERMI 733
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC V A S ++ VDRIFTR+GA DN+ QST++ EL E+ ++++A+K SL ++DEL
Sbjct: 1050 GCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDEL 1108
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3
Length = 1358
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTPVDR+FTR+GA D + +ST+ EL+E+ +I+RHA+ +SL LVDEL
Sbjct: 1155 GCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDEL 1213
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N N +TEGTL+E+LD C T FGKR+L+ L PL + AI R D
Sbjct: 731 VLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSAISDRLD 790
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A+ L+ ++ +K L DLER+L
Sbjct: 791 AVEDLMAVPDKVTEVADLLKKLPDLERLL 819
>sp|A6W1Q6|MUTS_MARMS DNA mismatch repair protein MutS OS=Marinomonas sp. (strain MWYL1)
GN=mutS PE=3 SV=1
Length = 883
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 51/65 (78%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L+ GC VPA+S +++ VDRIFTRMG+ D+L+G +ST++ E+TE+ I+ +ASK SL
Sbjct: 636 TLLAHTGCFVPAESASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNASKNSLV 695
Query: 152 LVDEL 156
L+DE+
Sbjct: 696 LMDEV 700
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++D NL + N T TL+E LD C T G R+L+ L P+ +L+ I+ RQ
Sbjct: 271 LIDGATRRNLEIDINLTGGTSNTLVEVLDKCSTPMGSRLLKRWLHTPIRDLNEIQARQQV 330
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
++ L Q A +K + DLER+L
Sbjct: 331 VAE-LQQNQSYNAFEAPLKKVGDLERIL 357
>sp|Q7NRW7|MUTS_CHRVO DNA mismatch repair protein MutS OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=mutS PE=3 SV=1
Length = 873
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 50/65 (76%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L+ G VPADS + P+DRIFTR+GA D+L+G +ST++ E+TE+ I+ +AS++SL
Sbjct: 652 TLLAHVGSFVPADSAVIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILNNASEHSLV 711
Query: 152 LVDEL 156
L+DE+
Sbjct: 712 LMDEV 716
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL + TL LD C TS G R+L L P+ N + +R A+
Sbjct: 291 MDAATRRNLELTETIRGEASPTLASLLDTCATSMGSRLLGHWLHHPMRNHGKLARRHGAV 350
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
LL + + + A++ + D+ER+
Sbjct: 351 RALLSR---YQDVHAELDQVSDIERI 373
>sp|Q31F87|MUTS_THICR DNA mismatch repair protein MutS OS=Thiomicrospira crunogena
(strain XCL-2) GN=mutS PE=3 SV=1
Length = 871
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA+S TL P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ HAS SL L
Sbjct: 635 IMAYMGSFVPAESATLGPIDRIFTRIGASDDLTSGRSTFMVEMTETANILHHASPESLIL 694
Query: 153 VDEL 156
+DE+
Sbjct: 695 MDEV 698
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD+ + NL + TN TL LD+ T+ G R++ L +PL N D I R +AI
Sbjct: 270 LDAMSRRNLELDTNLTGGKNHTLFAILDNATTAMGSRLMNRWLNQPLRNRDIINDRFNAI 329
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
+++Q H E+ R+ +K + DLER+L
Sbjct: 330 EDIIEQ-HSQEEFRSALKPIGDLERIL 355
>sp|Q5X4B2|MUTS_LEGPA DNA mismatch repair protein MutS OS=Legionella pneumophila (strain
Paris) GN=mutS PE=3 SV=1
Length = 846
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
LS G VPAD +TL P+DRIFTR+GA D+LS +ST++ E+TE+ I+R A+ SL
Sbjct: 627 VLLSHIGSFVPADEVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLV 686
Query: 152 LVDEL 156
L+DE+
Sbjct: 687 LIDEI 691
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD++ +L + N E L+ LD + G R+L+ L KPL I+ RQ AI
Sbjct: 263 LDASTQKHLELFENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAIIQTRQQAI 322
Query: 62 S--VLLDQKHITEQMRAKMKDLRDLERML 88
+ L Q Q+ +K D+ER++
Sbjct: 323 KEIIFLQQDVSLHQL---IKQCADVERIV 348
>sp|A4G717|MUTS_HERAR DNA mismatch repair protein MutS OS=Herminiimonas arsenicoxydans
GN=mutS PE=3 SV=3
Length = 893
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L++ G VPA S T+ P+DRIFTR+GA D+L+G +ST++ E+TES I+ A++ SL
Sbjct: 658 TLLAYVGSFVPATSATIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAILNGATENSLV 717
Query: 152 LVDEL 156
L+DE+
Sbjct: 718 LMDEV 722
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 2 LDSTALANLHV---LTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQ 58
LD+ NL + + DN + TL LDHC T+ G R+LR L + + R
Sbjct: 289 LDAATRRNLELTETIRGQDNNS-ATLFSLLDHCRTAMGSRLLRHWLHHARRDQAVARARH 347
Query: 59 DAISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCR 100
AI+ L+ T + + + + D+ER+ +T ++ Q R
Sbjct: 348 AAINALMRTDACT-GLASTLASVPDVERI---ATRIALQSAR 385
>sp|Q47DJ8|MUTS_DECAR DNA mismatch repair protein MutS OS=Dechloromonas aromatica (strain
RCB) GN=mutS PE=3 SV=1
Length = 860
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ GC VPAD L P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ HA+ SL
Sbjct: 637 ALLAHIGCYVPADRCVLGPLDRIFTRIGASDDLASGRSTFMVEMTEAAAILHHATNQSLV 696
Query: 152 LVDEL 156
L+DE+
Sbjct: 697 LMDEI 701
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-DQKHITEQMRAKMKDL 81
TL LD+CVTS G R+LR L PL D R A+ LL D + ++R ++ +
Sbjct: 289 TLFSLLDNCVTSMGSRLLRHTLHHPLRARDIPAARHGAVEALLEDYGRLGNEVRKALRGI 348
Query: 82 RDLERM 87
D+ER+
Sbjct: 349 ADIERI 354
>sp|Q8Y093|MUTS_RALSO DNA mismatch repair protein MutS OS=Ralstonia solanacearum (strain
GMI1000) GN=mutS PE=3 SV=1
Length = 882
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 48/65 (73%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L++ G VPAD+ T+ P+DRIFTR+GA D+L+G +ST++ E+TE+ I+ A+ SL
Sbjct: 646 VLLAYVGAFVPADAATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSLV 705
Query: 152 LVDEL 156
L+DE+
Sbjct: 706 LMDEI 710
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD+ NL + TL LD C TS G R+LR L PL + + RQ AI
Sbjct: 283 LDTATRRNLELTETLRGQESPTLFSLLDTCATSMGSRLLRHWLHHPLRDRAVPQARQQAI 342
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
VLL + +R ++ L D+ER+
Sbjct: 343 EVLLAGD--WQSLRGTLRTLSDVERI 366
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
Length = 1360
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 1157 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDEL 1215
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N N +TEGTL+E++D C T FGKR+L+ L PL N AI R D
Sbjct: 734 VLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLD 793
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 794 AIEDLMVVPDKISEVVELLKKLPDLERLL 822
>sp|B1KPS7|MUTS_SHEWM DNA mismatch repair protein MutS OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=mutS PE=3 SV=1
Length = 858
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 48/65 (73%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPA S T+ PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMAHIGCYVPAQSATIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPKSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD+ NL + N TL LD+ T G RML+ + +PL + I+ RQ A
Sbjct: 270 ILDAATRRNLELTMNLQGGHSNTLATVLDNTTTPMGSRMLQRWIHEPLRDRQRIEARQSA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERM 87
+ +L+ + +++ +K L D+ER+
Sbjct: 330 LEEILENG-LYDELHPLLKSLGDVERI 355
>sp|Q5ZUJ3|MUTS_LEGPH DNA mismatch repair protein MutS OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=mutS PE=3 SV=2
Length = 846
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ G VPAD +TL P+DRIFTR+GA D+LS +ST++ E+TE+ I+R A+ SL
Sbjct: 627 VLLAHIGSFVPADKVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLV 686
Query: 152 LVDEL 156
L+DE+
Sbjct: 687 LIDEI 691
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD++ +L + N E L+ LD + G R+L+ L KPL I+ RQ AI
Sbjct: 263 LDASTQKHLELFENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAIIQTRQQAI 322
Query: 62 S--VLLDQKHITEQMRAKMKDLRDLERML 88
+ L Q Q+ +K D+ER++
Sbjct: 323 KEIIFLQQDVSLHQL---IKQCADVERIV 348
>sp|A5ICW2|MUTS_LEGPC DNA mismatch repair protein MutS OS=Legionella pneumophila (strain
Corby) GN=mutS PE=3 SV=2
Length = 846
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ G VPAD +TL P+DRIFTR+GA D+LS +ST++ E+TE+ I+R A+ SL
Sbjct: 627 VLLAHIGSFVPADKVTLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLV 686
Query: 152 LVDEL 156
L+DE+
Sbjct: 687 LIDEI 691
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD++ +L + N E L+ LD + G R+L+ L KPL I+ RQ AI
Sbjct: 263 LDASTQKHLELFENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAIIQTRQQAI 322
Query: 62 S--VLLDQKHITEQMRAKMKDLRDLERML 88
+ L Q Q+ +K D+ER++
Sbjct: 323 KEIIFLQQDVSLHQL---IKQCADVERIV 348
>sp|A6SXI2|MUTS_JANMA DNA mismatch repair protein MutS OS=Janthinobacterium sp. (strain
Marseille) GN=mutS PE=3 SV=1
Length = 882
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 48/65 (73%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L++ G VPA S + P+DRIFTR+GA D+L+G +ST++ E+TES I+ A++ SL
Sbjct: 652 TLLAYVGSFVPASSAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTESAAILNGATENSLV 711
Query: 152 LVDEL 156
L+DE+
Sbjct: 712 LMDEV 716
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDLR 82
TL LDHC T+ G R+LR L + R AI+ L+ + + + + +
Sbjct: 306 TLFSLLDHCRTAMGSRLLRHWLHHARRDQSVAMARHAAINALM-RADACSGLASTLASVP 364
Query: 83 DLERMLPSSTFLS-----FQGCRVPADSLTLTPVDRIFTRMGAKD 122
D+ER+ LS G R L P R + M KD
Sbjct: 365 DVERITTRIALLSARPRDLAGMR---GGLQQLPSLRAYVSMCNKD 406
>sp|Q1H2P1|MUTS_METFK DNA mismatch repair protein MutS OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=mutS1 PE=3 SV=1
Length = 884
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 48/65 (73%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ GC VPA S + P+DRIFTR+GA D+L+G +ST++ E+TE+ I+ +A++ SL
Sbjct: 660 VLLAHCGCFVPAKSARIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATERSLV 719
Query: 152 LVDEL 156
L+DE+
Sbjct: 720 LLDEI 724
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD+ NL + + TL L+ VT+ G R+LR+ L PL + I+ R A+
Sbjct: 299 LDAATRRNLEIDQTLRGESSPTLYSLLNTTVTAMGARLLRSWLHHPLQHQADIQARLQAV 358
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
VL Q + +R ++++ D+ERM
Sbjct: 359 KVLQAQ---YDGLRPLLRNVGDIERM 381
>sp|A9M4L8|MUTS_NEIM0 DNA mismatch repair protein MutS OS=Neisseria meningitidis
serogroup C (strain 053442) GN=mutS PE=3 SV=1
Length = 864
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ GC VPAD+ T+ P+D+IFTR+GA D+L+ +ST++ E++E+ I+ HA++ SL
Sbjct: 624 VLLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLV 683
Query: 152 LVDEL 156
L+DE+
Sbjct: 684 LMDEV 688
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL + TL+ LD C T G R+L L PL N I+ RQ+A+
Sbjct: 265 MDAATRRNLEITQTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAV 324
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
+ L Q + ++ ++K++ D+ER+
Sbjct: 325 AALESQ---YKPLQCRLKNIADIERI 347
>sp|A1U2E8|MUTS_MARAV DNA mismatch repair protein MutS OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=mutS PE=3 SV=1
Length = 874
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
L++ G VPA+ L PVDRIFTRMG+ D+++G +ST++ E+TE+ I+ +A+++SL L
Sbjct: 631 LLAYTGSFVPANRAVLGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVL 690
Query: 153 VDEL 156
+DE+
Sbjct: 691 MDEV 694
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD+ + NL + TN + TL +D T+ G R LR L +PL +++ ++QRQ A
Sbjct: 265 ILDAASRRNLEIDTNLMGGQQHTLAWVMDRTATAMGARELRRWLNRPLRDVERVRQRQQA 324
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
+S LLD H E + +K + D+ER+L
Sbjct: 325 VSALLDGFHY-EPVHDLLKRVGDIERIL 351
>sp|Q9JWT7|MUTS_NEIMA DNA mismatch repair protein MutS OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=mutS PE=3
SV=1
Length = 864
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ GC VPAD+ T+ P+D+IFTR+GA D+L+ +ST++ E++E+ I+ HA++ SL
Sbjct: 624 VLLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLV 683
Query: 152 LVDEL 156
L+DE+
Sbjct: 684 LMDEV 688
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL + TL+ LD C T G R+L L PL N I+ RQ+A+
Sbjct: 265 MDAATRRNLEITQTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAV 324
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
+ L Q + ++ ++K++ D+ER+
Sbjct: 325 AALESQ---YKPLQCRLKNIADIERI 347
>sp|Q9JX94|MUTS_NEIMB DNA mismatch repair protein MutS OS=Neisseria meningitidis
serogroup B (strain MC58) GN=mutS PE=3 SV=1
Length = 864
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ GC VPAD+ T+ P+D+IFTR+GA D+L+ +ST++ E++E+ I+ HA++ SL
Sbjct: 624 VLLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLV 683
Query: 152 LVDEL 156
L+DE+
Sbjct: 684 LMDEV 688
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL + TL+ LD C T G R+L L PL N I+ RQ+A+
Sbjct: 265 MDAATRRNLEITQTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAV 324
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
+ L Q + ++ ++K + D+ER+
Sbjct: 325 AALESQ---YKPLQCRLKSIADIERI 347
>sp|A1KWM6|MUTS_NEIMF DNA mismatch repair protein MutS OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=mutS PE=3 SV=1
Length = 864
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ GC VPAD+ T+ P+D+IFTR+GA D+L+ +ST++ E++E+ I+ HA++ SL
Sbjct: 624 VLLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSLV 683
Query: 152 LVDEL 156
L+DE+
Sbjct: 684 LMDEV 688
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL + TL+ LD C T G R+L L PL N I+ RQ+A+
Sbjct: 265 MDAATRRNLEITQTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAV 324
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
+ L Q + ++ ++K++ D+ER+
Sbjct: 325 AALESQ---YKPLQCRLKNIADIERI 347
>sp|Q12PY3|MUTS_SHEDO DNA mismatch repair protein MutS OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mutS PE=3
SV=1
Length = 862
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
+ ++ GC VPADS + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 SLMAHIGCFVPADSAVIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSQSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD+ NL + N E TL LD+ T G RML+ L +PL + + I R +A
Sbjct: 270 ILDAATRRNLELTQNLSGGREHTLAWVLDNTATPMGSRMLQRWLHQPLRDNNIIASRHNA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
++ L++ ++ +++ ++K L D+ER++
Sbjct: 330 VAELIE-ANLFDELHQQLKSLGDIERIM 356
>sp|Q5F5J4|MUTS_NEIG1 DNA mismatch repair protein MutS OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=mutS PE=3 SV=1
Length = 864
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ GC VPAD+ T+ PVD+IFTR+GA D+L+ +ST++ E++E+ I+ HA++ S+
Sbjct: 624 VLLAHTGCFVPADAATIGPVDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSIV 683
Query: 152 LVDEL 156
L+DE+
Sbjct: 684 LMDEV 688
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL + TL LD C T G R+L L PL N I+ RQ+A+
Sbjct: 265 MDAATRRNLEITQTLSGKKTPTLFSILDGCATHMGSRLLALWLHHPLRNRAHIRARQEAV 324
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERM 87
+ L Q E ++ +K + D+ER+
Sbjct: 325 TALESQ---YEPLQCHLKSIADIERI 347
>sp|Q1QZX5|MUTS_CHRSD DNA mismatch repair protein MutS OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=mutS
PE=3 SV=1
Length = 859
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 49/65 (75%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ G VPAD + PVDRIFTR+G+ D+L+G +ST++ E+TE+ TI+ +A+++SL
Sbjct: 632 ALLAHTGSCVPADEAEIGPVDRIFTRIGSSDDLAGGRSTFMVEMTETATILHNATEHSLV 691
Query: 152 LVDEL 156
L+DE+
Sbjct: 692 LMDEI 696
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++D+ + NL + TN + TL LD T+ G R L+ L +PL ++ I+ RQ A
Sbjct: 266 VIDAASRRNLEIDTNLGGGFDNTLASVLDTTATAMGSRQLKRWLNRPLRDIAQIQSRQAA 325
Query: 61 ISVLLD-QKHITEQMRAKMKDLRDLERML 88
+ L+D +H T +R +K + D+ER+L
Sbjct: 326 VQCLIDADRHAT--LRDALKAIGDIERIL 352
>sp|A5UE20|MUTS_HAEIE DNA mismatch repair protein MutS OS=Haemophilus influenzae (strain
PittEE) GN=mutS PE=3 SV=1
Length = 861
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L++ G VPADS + P+DRIFTR+GA D+L+ +ST++ E+TE I+ A++ SL
Sbjct: 633 TLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLV 692
Query: 152 LVDEL 156
L+DE+
Sbjct: 693 LIDEI 697
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD+ NL + N TE TL LD CVT G R+L+ + +P+ +++ +KQRQ AI
Sbjct: 269 LDAATRRNLELTQNLSGGTENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAI 328
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
+ +L+ + ++++ ++ + D+ER+L
Sbjct: 329 AEILN-FDLVDELQPYLQLVGDMERIL 354
>sp|Q4QML2|MUTS_HAEI8 DNA mismatch repair protein MutS OS=Haemophilus influenzae (strain
86-028NP) GN=mutS PE=3 SV=1
Length = 861
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L++ G VPADS + P+DRIFTR+GA D+L+ +ST++ E+TE I+ A++ SL
Sbjct: 633 TLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLV 692
Query: 152 LVDEL 156
L+DE+
Sbjct: 693 LIDEI 697
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD+ NL + N TE TL LD CVT G R+L+ + +P+ +++ +KQRQ AI
Sbjct: 269 LDAATRRNLELTQNLSGGTENTLASVLDKCVTPMGSRLLKRWIHQPIRDVEKLKQRQQAI 328
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
+ +L+ + ++++ ++ + D+ER+L
Sbjct: 329 AEILN-FDLVDELQPYLQLVGDMERIL 354
>sp|A9KYG1|MUTS_SHEB9 DNA mismatch repair protein MutS OS=Shewanella baltica (strain
OS195) GN=mutS PE=3 SV=1
Length = 856
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPAD + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +AS SL
Sbjct: 635 TLMAHIGCFVPADRALIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNASASSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N + TL LD+ T G RML+ + +PL + IK RQ A
Sbjct: 270 VLDAATRRNLELTQNLAGGRDNTLAAVLDNTATPMGSRMLQRWIHQPLRDPKHIKARQQA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
++ LLD E + ++K L D+ER++
Sbjct: 330 VTELLDTT-AHEGLHEQLKALGDIERIM 356
>sp|Q8EBR9|MUTS_SHEON DNA mismatch repair protein MutS OS=Shewanella oneidensis (strain
MR-1) GN=mutS PE=3 SV=1
Length = 856
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPA+ T+ P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N + TL LD+ T+ G RML+ + +PL + I RQ A
Sbjct: 270 VLDAATRRNLELTQNLSGGRDNTLAAVLDNTATAMGSRMLQRWIHQPLRDHALILARQTA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
++ LL+ + E + ++K L D+ER++
Sbjct: 330 VNELLETA-VHESLHEQLKALGDIERIM 356
>sp|A8FST7|MUTS_SHESH DNA mismatch repair protein MutS OS=Shewanella sediminis (strain
HAW-EB3) GN=mutS PE=3 SV=1
Length = 859
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPA S + PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMTHIGCYVPAQSAVIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATTESLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N E TL LD+ T G RML+ + +PL N I+ RQ A
Sbjct: 270 VLDAATRRNLELTVNLQGGHENTLASVLDNTATPMGSRMLQRWIHEPLRNQQQIESRQSA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERM 87
++ +LD ++ E + ++K L D+ER+
Sbjct: 330 LTEILD-TNLFETLEPQLKALGDVERI 355
>sp|Q6FC54|MUTS_ACIAD DNA mismatch repair protein MutS OS=Acinetobacter sp. (strain ADP1)
GN=mutS PE=3 SV=1
Length = 881
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
+ L++ G VPA S L P+DRIFTR+G+ D+LS +ST++ E+TE+ I+ HA+ SL
Sbjct: 649 SLLAYCGSYVPAKSAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATHQSLV 708
Query: 152 LVDEL 156
L+DE+
Sbjct: 709 LMDEV 713
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDLR 82
+L ++ C T+ G R+L L++P+ + + R DA LL H +R +K++
Sbjct: 302 SLFNLINDCQTAMGGRLLSRILMQPIRDTAILDARLDATEQLLIGYH-ESPVRLVLKEIG 360
Query: 83 DLERML 88
D+ER+L
Sbjct: 361 DIERVL 366
>sp|A8H1T4|MUTS_SHEPA DNA mismatch repair protein MutS OS=Shewanella pealeana (strain
ATCC 700345 / ANG-SQ1) GN=mutS PE=3 SV=1
Length = 859
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPA+ + PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMAHIGCYVPAEQAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N E TL LD+ VT G RML+ + +PL + D I+ RQ +
Sbjct: 270 VLDAATRRNLELTVNLQGGRENTLASVLDNTVTPMGSRMLQRWIHQPLRDHDIIRARQAS 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERM 87
I+ L+ E + +K L D+ER+
Sbjct: 330 IAELMMTGDF-ETLSEDLKALGDVERI 355
>sp|Q0HL63|MUTS_SHESM DNA mismatch repair protein MutS OS=Shewanella sp. (strain MR-4)
GN=mutS PE=3 SV=1
Length = 861
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPAD + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMAHIGCFVPADRAIIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N + TL LD+ T+ G RML+ + +PL + I RQ A
Sbjct: 270 VLDAATRRNLELTQNLSGGRDNTLAAVLDNTATAMGSRMLQRWIHQPLRDHAQIFARQTA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
++ LL+ E + ++K L D+ER++
Sbjct: 330 VNELLETT-AHESLHEQLKALGDIERIM 356
>sp|B5FAC8|MUTS_VIBFM DNA mismatch repair protein MutS OS=Vibrio fischeri (strain MJ11)
GN=mutS PE=3 SV=1
Length = 854
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 46/59 (77%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPADS + +DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+K+SL L+DE+
Sbjct: 638 GCYVPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDEI 696
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD+ NL + N TL E LDH T+ G R+L+ L +P+ D + QR DA
Sbjct: 267 ILDAATRRNLEITQNLAGGFNHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLNQRLDA 326
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L + + + ++K++ D+ER+L
Sbjct: 327 IGE-LKESGLFADIAPQLKNIGDVERIL 353
>sp|A0KU91|MUTS_SHESA DNA mismatch repair protein MutS OS=Shewanella sp. (strain ANA-3)
GN=mutS PE=3 SV=1
Length = 861
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPAD + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMAHIGCFVPADRAIIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N + TL LD+ T+ G RML+ + +PL + I RQ A
Sbjct: 270 VLDAATRRNLELTQNLSGGRDNTLAAVLDNTATAMGSRMLQRWIHQPLRDHAQIFARQTA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
++ LL+ E + ++K L D+ER++
Sbjct: 330 VNELLETT-AHESLHDQLKALGDIERIM 356
>sp|P44834|MUTS_HAEIN DNA mismatch repair protein MutS OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mutS PE=3 SV=1
Length = 861
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L++ G VPADS + P+DRIFTR+GA D+L+ +ST++ E+TE I+ A+ SL
Sbjct: 633 TLLAYIGSFVPADSARIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATAQSLV 692
Query: 152 LVDEL 156
L+DE+
Sbjct: 693 LIDEI 697
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD+ NL + N TE TL LD CVT G R+L+ + +P+ +++ +KQRQ +I
Sbjct: 269 LDAATRRNLELTQNLAGGTENTLASVLDKCVTPMGSRLLKRWIHQPVRDVEKLKQRQQSI 328
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
+ +L+ + ++++ ++ + D+ER+L
Sbjct: 329 AEILN-FDLVDELQPYLQLVGDMERIL 354
>sp|Q5E7G7|MUTS_VIBF1 DNA mismatch repair protein MutS OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=mutS PE=3 SV=2
Length = 854
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 46/59 (77%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPADS + +DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+K+SL L+DE+
Sbjct: 638 GCYVPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATKHSLVLMDEI 696
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD+ NL + N TL E LDH T+ G R+L+ L +P+ D + QR DA
Sbjct: 267 ILDAATRRNLEITQNLAGGFNHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLNQRLDA 326
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L + + M ++K++ D+ER+L
Sbjct: 327 IGE-LKESGLFADMAPQLKNIGDVERIL 353
>sp|Q5WVP6|MUTS_LEGPL DNA mismatch repair protein MutS OS=Legionella pneumophila (strain
Lens) GN=mutS PE=3 SV=1
Length = 846
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ G VPAD + L P+DRIFTR+GA D+LS +ST++ E+TE+ I+R A+ SL
Sbjct: 627 VLLAHIGSFVPADEVRLGPLDRIFTRIGASDDLSSGRSTFMVEMTETAQILRQATSQSLV 686
Query: 152 LVDEL 156
L+DE+
Sbjct: 687 LIDEI 691
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD++ +L + N E L+ LD + G R+L+ L KPL I+ RQ AI
Sbjct: 263 LDASTQRHLELFENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAIIQTRQQAI 322
Query: 62 S--VLLDQKHITEQMRAKMKDLRDLERML 88
+ L Q Q+ +K D+ER++
Sbjct: 323 KEIIFLQQDVSLHQL---IKQCADVERIV 348
>sp|Q6D8C1|MUTS_ERWCT DNA mismatch repair protein MutS OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=mutS
PE=3 SV=1
Length = 854
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPAD + PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++ SL L+DE+
Sbjct: 639 GCFVPADQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEI 697
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT+ G RML+ + P ++DA+KQRQ A
Sbjct: 270 IMDAATRRNLELTQNLSGGVENTLAAVLDCTVTAMGSRMLKRWIHMPSRDIDALKQRQQA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
IS L + IT ++ ++ + DLER+L
Sbjct: 330 ISAL---QEITPDLQPYLRQVGDLERIL 354
>sp|B8CJQ5|MUTS_SHEPW DNA mismatch repair protein MutS OS=Shewanella piezotolerans
(strain WP3 / JCM 13877) GN=mutS PE=3 SV=1
Length = 860
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPA+ + PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMAHIGCYVPAEHAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N TL LD VT+ G RML+ L +PL + IK RQ +
Sbjct: 270 VLDAATRRNLELTVNLQGGHTNTLASVLDSTVTAMGSRMLQRWLHQPLRDHQVIKARQSS 329
Query: 61 ISVLLDQKHITEQMRAK-MKDLRDLERM 87
I+ L+ ++ Q+ A+ +K L D+ER+
Sbjct: 330 IAELIATENY--QLLAEDLKALGDVERI 355
>sp|C6DAK6|MUTS_PECCP DNA mismatch repair protein MutS OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=mutS PE=3 SV=1
Length = 854
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPAD + PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++ SL L+DE+
Sbjct: 639 GCFVPADQAVIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEI 697
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT+ G RML+ + P ++DA++QRQ A
Sbjct: 270 IMDAATRRNLELTQNLSGGVENTLAAVLDCTVTAMGSRMLKRWIHMPSRDIDALQQRQQA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
IS L D IT ++ ++ + DLER+L
Sbjct: 330 ISALQD---ITPDLQPYLRQVGDLERIL 354
>sp|B0TK13|MUTS_SHEHH DNA mismatch repair protein MutS OS=Shewanella halifaxensis (strain
HAW-EB4) GN=mutS PE=3 SV=1
Length = 859
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VPA+ + PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A+ SL
Sbjct: 635 TLMAHIGCYVPAEHAVIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATPNSLV 694
Query: 152 LVDEL 156
L+DE+
Sbjct: 695 LMDEI 699
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N E TL LD+ VT G RML+ L +PL + D I+ RQ +
Sbjct: 270 VLDAATRRNLELTVNLQGGRENTLASVLDNTVTPMGSRMLQRWLHQPLRDHDIIRARQVS 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERM 87
I LL + E + +K + D+ER+
Sbjct: 330 IEELLGNANY-EILSEDLKAIGDIERI 355
>sp|A1JJU1|MUTS_YERE8 DNA mismatch repair protein MutS OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=mutS PE=3
SV=1
Length = 851
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
L+ G VPAD T+ PVDRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++ SL
Sbjct: 631 VLLAHMGSYVPADQATIGPVDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEQSLV 690
Query: 152 LVDEL 156
L+DE+
Sbjct: 691 LMDEI 695
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++D+ NL + N TE TL LD VT+ G RML+ L P+ + + RQ A
Sbjct: 268 VMDAATRRNLELTQNLSGGTENTLAAILDCTVTAMGSRMLKRWLHMPIRDTKVLTDRQQA 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D IT +++ ++ + DLER+L
Sbjct: 328 IGGLQD---ITAELQTPLRQVGDLERIL 352
>sp|B0UWV7|MUTS_HAES2 DNA mismatch repair protein MutS OS=Haemophilus somnus (strain
2336) GN=mutS PE=3 SV=1
Length = 859
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
L S LA L VLTN E TL T G ++++ + P+ +K+ A
Sbjct: 544 LASLTLAELDVLTNLAERAE-TLNYVQPQFSTQVGLQIMQGR--HPVVE-QVLKEPFIAN 599
Query: 62 SVLLDQK-HITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGA 120
V L+QK H+ M R T +++ G VPA+S + P+DRIFTR+GA
Sbjct: 600 PVELNQKRHLLIITGPNMGGKSTYMRQTALITLMAYIGSFVPAESAVIGPIDRIFTRIGA 659
Query: 121 KDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
D+L+ +ST++ E+TE I+ A++ SL L+DE+
Sbjct: 660 SDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEI 695
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D++ NL + N TE TL LD CVT G R+L+ + +P+ N++ ++ RQ I
Sbjct: 269 IDASTRRNLELTQNLAGGTENTLAAILDKCVTPMGSRLLKRWIHQPIRNIEKLQYRQQHI 328
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
+LL Q+++ E+++ ++ + D+ER+L
Sbjct: 329 QMLL-QQNLVEELQPLLRQVGDMERIL 354
>sp|A7ZQH3|MUTS_ECO24 DNA mismatch repair protein MutS OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=mutS PE=3 SV=2
Length = 855
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 634 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 693
Query: 153 VDEL 156
+DE+
Sbjct: 694 MDEI 697
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 270 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 330 IGALQD---FTAELQPVLRQVGDLERIL 354
>sp|B7NT79|MUTS_ECO7I DNA mismatch repair protein MutS OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 632 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691
Query: 153 VDEL 156
+DE+
Sbjct: 692 MDEI 695
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAELQPVLRQVGDLERIL 352
>sp|B1LQ55|MUTS_ECOSM DNA mismatch repair protein MutS OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=mutS PE=3 SV=1
Length = 853
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 632 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691
Query: 153 VDEL 156
+DE+
Sbjct: 692 MDEI 695
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAELQPVLRQVGDLERIL 352
>sp|B7MYN6|MUTS_ECO81 DNA mismatch repair protein MutS OS=Escherichia coli O81 (strain
ED1a) GN=mutS PE=3 SV=1
Length = 853
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 632 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691
Query: 153 VDEL 156
+DE+
Sbjct: 692 MDEI 695
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAELQPVLRQVGDLERIL 352
>sp|B7UHE9|MUTS_ECO27 DNA mismatch repair protein MutS OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 632 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691
Query: 153 VDEL 156
+DE+
Sbjct: 692 MDEI 695
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLTSVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAELQPVLRQVGDLERIL 352
>sp|B7LWH8|MUTS_ESCF3 DNA mismatch repair protein MutS OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mutS PE=3 SV=1
Length = 853
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 632 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691
Query: 153 VDEL 156
+DE+
Sbjct: 692 MDEI 695
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAELQPVLRQVGDLERIL 352
>sp|B6I6B9|MUTS_ECOSE DNA mismatch repair protein MutS OS=Escherichia coli (strain SE11)
GN=mutS PE=3 SV=1
Length = 853
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 632 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691
Query: 153 VDEL 156
+DE+
Sbjct: 692 MDEI 695
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAELQPVLRQVGDLERIL 352
>sp|B7N6W4|MUTS_ECOLU DNA mismatch repair protein MutS OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=mutS PE=3 SV=1
Length = 853
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 48/64 (75%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L
Sbjct: 632 LMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691
Query: 153 VDEL 156
+DE+
Sbjct: 692 MDEI 695
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T +++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAELQPVLRQVGDLERIL 352
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,776,984
Number of Sequences: 539616
Number of extensions: 1694748
Number of successful extensions: 6491
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 5119
Number of HSP's gapped (non-prelim): 1411
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)