Query psy13255
Match_columns 156
No_of_seqs 178 out of 1648
Neff 8.7
Searched_HMMs 29240
Date Sat Aug 17 00:05:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_B DNA mismatch repair pro 99.9 1.1E-21 3.8E-26 170.4 12.1 64 93-156 698-761 (918)
2 3thx_A DNA mismatch repair pro 99.9 7.6E-22 2.6E-26 171.7 10.9 64 93-156 687-750 (934)
3 1wb9_A DNA mismatch repair pro 99.7 4.6E-20 1.6E-24 158.7 -1.2 134 22-156 546-695 (800)
4 2o8b_B DNA mismatch repair pro 99.7 1.9E-20 6.6E-25 164.4 -4.6 133 23-156 714-877 (1022)
5 1ewq_A DNA mismatch repair pro 99.7 1.1E-18 3.8E-23 149.5 -2.1 131 22-156 521-664 (765)
6 2o8b_B DNA mismatch repair pro 99.7 4.3E-17 1.5E-21 143.3 7.4 93 1-93 396-489 (1022)
7 1wb9_A DNA mismatch repair pro 99.4 2E-13 7E-18 117.6 6.2 88 1-91 268-355 (800)
8 1ewq_A DNA mismatch repair pro 99.4 2.7E-13 9.3E-18 116.3 6.9 89 1-91 251-339 (765)
9 3thx_B DNA mismatch repair pro 93.9 0.0014 4.8E-08 57.5 -5.3 78 22-100 609-696 (918)
10 3thx_A DNA mismatch repair pro 87.4 0.0064 2.2E-07 53.4 -7.8 78 22-100 596-685 (934)
11 1jbk_A CLPB protein; beta barr 67.3 1.9 6.5E-05 28.9 1.2 20 137-156 105-124 (195)
12 2p65_A Hypothetical protein PF 61.0 4.5 0.00016 27.0 2.2 22 135-156 103-124 (187)
13 4gp7_A Metallophosphoesterase; 51.6 8.6 0.00029 26.0 2.3 12 84-95 16-27 (171)
14 2kjq_A DNAA-related protein; s 44.7 5.8 0.0002 26.4 0.5 15 84-98 43-57 (149)
15 3j16_B RLI1P; ribosome recycli 32.8 20 0.00067 30.0 2.0 14 84-97 110-123 (608)
16 3ozx_A RNAse L inhibitor; ATP 29.8 42 0.0014 27.4 3.5 14 84-97 32-45 (538)
17 3h4m_A Proteasome-activating n 27.1 77 0.0026 22.7 4.3 10 147-156 110-119 (285)
18 1qvr_A CLPB protein; coiled co 27.0 47 0.0016 28.6 3.4 26 131-156 247-272 (854)
19 2eyu_A Twitching motility prot 23.9 28 0.00094 25.5 1.2 16 83-98 31-46 (261)
20 1g5t_A COB(I)alamin adenosyltr 22.0 51 0.0017 23.3 2.3 11 146-156 119-129 (196)
21 3hlu_A Uncharacterized protein 21.5 98 0.0034 18.9 3.3 24 132-155 56-79 (96)
22 3bos_A Putative DNA replicatio 21.5 11 0.00038 26.2 -1.3 13 84-96 59-71 (242)
No 1
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.86 E-value=1.1e-21 Score=170.38 Aligned_cols=64 Identities=45% Similarity=0.701 Sum_probs=51.6
Q ss_pred HHHhhCCCCCCCcccccccceeeccCCccccccCCcCcHHHHHHHHHHHHHhcCCCceEEeccC
Q psy13255 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156 (156)
Q Consensus 93 ~laq~g~~vpa~~~~l~~~d~i~~~~~~~d~l~~~~S~F~~e~~~~~~il~~~~~~slvliDE~ 156 (156)
+|+|.|++||+..+.++.++++|++++..|++..+.|+|+.||.++..|++.+++++|+|+||.
T Consensus 698 ~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP 761 (918)
T 3thx_B 698 IMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDEL 761 (918)
T ss_dssp HHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEEST
T ss_pred HHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999999999999999999995
No 2
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.86 E-value=7.6e-22 Score=171.73 Aligned_cols=64 Identities=41% Similarity=0.649 Sum_probs=52.6
Q ss_pred HHHhhCCCCCCCcccccccceeeccCCccccccCCcCcHHHHHHHHHHHHHhcCCCceEEeccC
Q psy13255 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156 (156)
Q Consensus 93 ~laq~g~~vpa~~~~l~~~d~i~~~~~~~d~l~~~~S~F~~e~~~~~~il~~~~~~slvliDE~ 156 (156)
+|+|+|++||+..+.++.+|++|++++..|++..+.|+|+.||.+++.+++.+++++|+|+||+
T Consensus 687 ~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp 750 (934)
T 3thx_A 687 LMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750 (934)
T ss_dssp HHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESC
T ss_pred HHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCC
Confidence 4688999999999999999999999999999999999999999999999999999999999995
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.75 E-value=4.6e-20 Score=158.71 Aligned_cols=134 Identities=28% Similarity=0.509 Sum_probs=102.8
Q ss_pred ccHHHHhhHhhhhHHHHHHHccccCCCCCH----HHHHhhHHHHHHHhhchhhHHHHHHhhhh-h--hhhhhhchhHH--
Q psy13255 22 GTLIEQLDHCVTSFGKRMLRAQLVKPLTNL----DAIKQRQDAISVLLDQKHITEQMRAKMKD-L--RDLERMLPSST-- 92 (156)
Q Consensus 22 ~sl~~~LD~~~t~~g~~~l~~~~~~P~~~~----~~i~~Rhplv~~l~~~~~v~~~i~~~l~~-~--~~~~n~~gk~~-- 92 (156)
...++.|| |+.+++..+...+|++|.++. ++.++|||+++....+.++++++...-.+ + -++||++|||+
T Consensus 546 ~~~la~lD-~l~s~A~~a~~~~~~~P~~~~~~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlL 624 (800)
T 1wb9_A 546 ASALAELD-VLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM 624 (800)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTTCBCCEECSSSCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhCCCcccEECCCCCEEEEeccccEEEccCCCceeeecccccCCCcEEEEECCCCCChHHHH
Confidence 36889999 999999999999999998863 35679999998655445677766432011 1 24599999985
Q ss_pred -------HHHhhCCCCCCCcccccccceeeccCCccccccCCcCcHHHHHHHHHHHHHhcCCCceEEeccC
Q psy13255 93 -------FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156 (156)
Q Consensus 93 -------~laq~g~~vpa~~~~l~~~d~i~~~~~~~d~l~~~~S~F~~e~~~~~~il~~~~~~slvliDE~ 156 (156)
+++|.|++||+..+.+++++++|++++..|++..+.|+|+.||.++..+++.+++++|+|+||+
T Consensus 625 r~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp 695 (800)
T 1wb9_A 625 RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEI 695 (800)
T ss_dssp HHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESC
T ss_pred HHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999995
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=1.9e-20 Score=164.40 Aligned_cols=133 Identities=32% Similarity=0.480 Sum_probs=99.6
Q ss_pred cHHHHhhHhhhhHHHHHH--HccccCCCCC--------HHHHHhhHHHHHHHh-hchhhHHHHHHhhh---------hh-
Q psy13255 23 TLIEQLDHCVTSFGKRML--RAQLVKPLTN--------LDAIKQRQDAISVLL-DQKHITEQMRAKMK---------DL- 81 (156)
Q Consensus 23 sl~~~LD~~~t~~g~~~l--~~~~~~P~~~--------~~~i~~Rhplv~~l~-~~~~v~~~i~~~l~---------~~- 81 (156)
..++.|| |+.+++..+. ...|++|.+. .++.++|||+++... .+.++++++..... .+
T Consensus 714 ~~la~lD-~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~ 792 (1022)
T 2o8b_B 714 ECIAVLD-VLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCV 792 (1022)
T ss_dssp HHHHHHH-HHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEE
T ss_pred HHHHHHH-HHHhHHHHHhhccCCccCCccccCCCCCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEE
Confidence 6789999 8999999998 6889999865 234578999987544 34567777653322 11
Q ss_pred -hhhhhhchhHH---------HHHhhCCCCCCCcccccccceeeccCCccccccCCcCcHHHHHHHHHHHHHhcCCCceE
Q psy13255 82 -RDLERMLPSST---------FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151 (156)
Q Consensus 82 -~~~~n~~gk~~---------~laq~g~~vpa~~~~l~~~d~i~~~~~~~d~l~~~~S~F~~e~~~~~~il~~~~~~slv 151 (156)
.++||++|||+ +|+|+|+|||+..+.++++|+||+++|..|++..+.|+|+.||.+++.++..+++++|+
T Consensus 793 ~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLl 872 (1022)
T 2o8b_B 793 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLV 872 (1022)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEE
Confidence 24699999985 46899999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC
Q psy13255 152 LVDEL 156 (156)
Q Consensus 152 liDE~ 156 (156)
|+||+
T Consensus 873 LLDEp 877 (1022)
T 2o8b_B 873 LVDEL 877 (1022)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 99996
No 5
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=1.1e-18 Score=149.48 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=104.7
Q ss_pred ccHHHHhhHhhhhHHHHHHHccccCCCCCH--HHHHhhHHHHHHHhhchhhHHHHHHhhhhh--hhhhhhchhHH-----
Q psy13255 22 GTLIEQLDHCVTSFGKRMLRAQLVKPLTNL--DAIKQRQDAISVLLDQKHITEQMRAKMKDL--RDLERMLPSST----- 92 (156)
Q Consensus 22 ~sl~~~LD~~~t~~g~~~l~~~~~~P~~~~--~~i~~Rhplv~~l~~~~~v~~~i~~~l~~~--~~~~n~~gk~~----- 92 (156)
...++.|| |+.+++..+....|++|.++. ++.++|||+++. .+.++++++... ..+ -++||++|||+
T Consensus 521 ~~~la~LD-~l~s~a~~a~~~~~~~P~~~~~i~i~~~rHP~le~--~~~~vl~disl~-g~i~~I~GpNGsGKSTlLr~i 596 (765)
T 1ewq_A 521 ARILAELD-VYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVER--RTEFVPNDLEMA-HELVLITGPNMAGKSTFLRQT 596 (765)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTCBCCEESSSEEEEEECCTTGGG--TSCCCCEEEEES-SCEEEEESCSSSSHHHHHHHH
T ss_pred HHHHHHHH-HHHhhHHHHHhCCceeeccCCcEEEEEeECceEcc--CCceEeeeccCC-CcEEEEECCCCCChHHHHHHH
Confidence 36889999 999999999999999998842 245689999874 345666666432 222 24599999985
Q ss_pred ----HHHhhCCCCCCCcccccccceeeccCCccccccCCcCcHHHHHHHHHHHHHhcCCCceEEeccC
Q psy13255 93 ----FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156 (156)
Q Consensus 93 ----~laq~g~~vpa~~~~l~~~d~i~~~~~~~d~l~~~~S~F~~e~~~~~~il~~~~~~slvliDE~ 156 (156)
+++|.|+++|+..+.+++++++|++++..|++..+.|+|+.||.+++.+++.+++++|+|+||.
T Consensus 597 agl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 597 ALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp HHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred HhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 3589999999999999999999999999999999999999999999999999999999999995
No 6
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.68 E-value=4.3e-17 Score=143.29 Aligned_cols=93 Identities=41% Similarity=0.618 Sum_probs=86.0
Q ss_pred CCCHHHHhhccccccC-CCCccccHHHHhhHhhhhHHHHHHHccccCCCCCHHHHHhhHHHHHHHhhchhhHHHHHHhhh
Q psy13255 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMK 79 (156)
Q Consensus 1 ~id~~t~~~Lei~~~~-~~~~~~sl~~~LD~~~t~~g~~~l~~~~~~P~~~~~~i~~Rhplv~~l~~~~~v~~~i~~~l~ 79 (156)
+||.+|++||||+++. +++++|||++.||+|.|++|+|+|++|+++|+.+.+.|+.||++|++++.+.....+++..|+
T Consensus 396 ~LD~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~ 475 (1022)
T 2o8b_B 396 VLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLK 475 (1022)
T ss_dssp BCCHHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred EeCHHHHHhhcCCccCCCCCCCCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4899999999999885 566789999999999999999999999999999999999999999999998888899999999
Q ss_pred hhhhhhhhchhHHH
Q psy13255 80 DLRDLERMLPSSTF 93 (156)
Q Consensus 80 ~~~~~~n~~gk~~~ 93 (156)
+++|++|+.+|+..
T Consensus 476 ~i~DlERll~Ri~~ 489 (1022)
T 2o8b_B 476 KLPDLERLLSKIHN 489 (1022)
T ss_dssp TCCCHHHHHHHHHH
T ss_pred cCccHHHHHHHHHh
Confidence 99999999888754
No 7
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.40 E-value=2e-13 Score=117.55 Aligned_cols=88 Identities=33% Similarity=0.501 Sum_probs=79.6
Q ss_pred CCCHHHHhhccccccCCCCccccHHHHhhHhhhhHHHHHHHccccCCCCCHHHHHhhHHHHHHHhhchhhHHHHHHhhhh
Q psy13255 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKD 80 (156)
Q Consensus 1 ~id~~t~~~Lei~~~~~~~~~~sl~~~LD~~~t~~g~~~l~~~~~~P~~~~~~i~~Rhplv~~l~~~~~v~~~i~~~l~~ 80 (156)
+||.+|+++||++++..++++|||++.+|+|.|++|+|+++.|+.+|+.+.+.|+.||..|+++.. ....++..+++
T Consensus 268 ~ld~~t~~~LEl~~~~~~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~---~~~~l~~~L~~ 344 (800)
T 1wb9_A 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD---FTAGLQPVLRQ 344 (800)
T ss_dssp EECHHHHHHTTSSSCTTSCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG---GHHHHHHHHHT
T ss_pred EecHHHHHhccCcccCCCCccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcC
Confidence 379999999999988766678999999999999999999999999999999999999999999876 66777777889
Q ss_pred hhhhhhhchhH
Q psy13255 81 LRDLERMLPSS 91 (156)
Q Consensus 81 ~~~~~n~~gk~ 91 (156)
++|+++..+|.
T Consensus 345 ~~Dler~l~r~ 355 (800)
T 1wb9_A 345 VGDLERILARL 355 (800)
T ss_dssp TCSHHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 99998888764
No 8
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.40 E-value=2.7e-13 Score=116.27 Aligned_cols=89 Identities=27% Similarity=0.390 Sum_probs=81.0
Q ss_pred CCCHHHHhhccccccCCCCccccHHHHhhHhhhhHHHHHHHccccCCCCCHHHHHhhHHHHHHHhhchhhHHHHHHhhhh
Q psy13255 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKD 80 (156)
Q Consensus 1 ~id~~t~~~Lei~~~~~~~~~~sl~~~LD~~~t~~g~~~l~~~~~~P~~~~~~i~~Rhplv~~l~~~~~v~~~i~~~l~~ 80 (156)
.||.+|+++||++++..+ .++|++.+|+|.|++|+|++++|+.+|+.+.+.|+.||..|+++..++.....++..+++
T Consensus 251 ~lD~~t~~~LEl~~~~~~--~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~ 328 (765)
T 1ewq_A 251 RLPEATLRALEVFEPLRG--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYR 328 (765)
T ss_dssp BCCHHHHHHTTSSSCSSS--CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred EecHHHHHhCcCccCCCc--cchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhc
Confidence 489999999999987665 689999999999999999999999999999999999999999999887778888888899
Q ss_pred hhhhhhhchhH
Q psy13255 81 LRDLERMLPSS 91 (156)
Q Consensus 81 ~~~~~n~~gk~ 91 (156)
++|+++..+|.
T Consensus 329 ~~Dler~l~r~ 339 (765)
T 1ewq_A 329 LADLERLATRL 339 (765)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99998887764
No 9
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.95 E-value=0.0014 Score=57.46 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=60.2
Q ss_pred ccHHHHhhHhhhhHHHHHHHccccCCCCCH----HHHHhhHHHHHHHhh--chhhHHHHHHhhh-h-h--hhhhhhchhH
Q psy13255 22 GTLIEQLDHCVTSFGKRMLRAQLVKPLTNL----DAIKQRQDAISVLLD--QKHITEQMRAKMK-D-L--RDLERMLPSS 91 (156)
Q Consensus 22 ~sl~~~LD~~~t~~g~~~l~~~~~~P~~~~----~~i~~Rhplv~~l~~--~~~v~~~i~~~l~-~-~--~~~~n~~gk~ 91 (156)
...++.|| |+.++|..+...+|++|.++. .+.++|||+++..+. +.++++++..... + + -++||++|||
T Consensus 609 ~~~la~lD-~l~s~A~~a~~~~~~~P~~~~~~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKS 687 (918)
T 3thx_B 609 VHHLATVD-CIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKS 687 (918)
T ss_dssp HHHHHHHH-HHHHHHHHHTSSSCBCCEEESSCEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCcCCcccCCCcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchH
Confidence 36899999 999999999999999998753 346799999997664 3578887753322 1 1 3469999999
Q ss_pred HHHHhhCCC
Q psy13255 92 TFLSFQGCR 100 (156)
Q Consensus 92 ~~laq~g~~ 100 (156)
++|.++|..
T Consensus 688 TlLr~i~~i 696 (918)
T 3thx_B 688 SYIKQVALI 696 (918)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888643
No 10
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.38 E-value=0.0064 Score=53.44 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=56.8
Q ss_pred ccHHHHhhHhhhhHHHHHHH--ccccCCCCCH------HHHHhhHHHHHHHhhchhhHHHHHHhhh--h--hhhhhhhch
Q psy13255 22 GTLIEQLDHCVTSFGKRMLR--AQLVKPLTNL------DAIKQRQDAISVLLDQKHITEQMRAKMK--D--LRDLERMLP 89 (156)
Q Consensus 22 ~sl~~~LD~~~t~~g~~~l~--~~~~~P~~~~------~~i~~Rhplv~~l~~~~~v~~~i~~~l~--~--~~~~~n~~g 89 (156)
...++.|| |+.+++..+.. .+|++|.+.. ++.++|||+++....+.++++++..... . .-++||++|
T Consensus 596 ~~~la~lD-~l~s~A~~a~~~~~~~~rP~~~~~~~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsG 674 (934)
T 3thx_A 596 NDVLAQLD-AVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGG 674 (934)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSSCCBCCEEECTTSCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSS
T ss_pred HHHHHHHH-HHHHHHHHHHhccCCCcCCeeccCCCcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCC
Confidence 36899999 99999999987 6799998753 2457999999854334577777753322 1 134699999
Q ss_pred hHHHHHhhCCC
Q psy13255 90 SSTFLSFQGCR 100 (156)
Q Consensus 90 k~~~laq~g~~ 100 (156)
||++|.++|..
T Consensus 675 KSTlLr~ial~ 685 (934)
T 3thx_A 675 KSTYIRQTGVI 685 (934)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888543
No 11
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=67.29 E-value=1.9 Score=28.93 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCCceEEeccC
Q psy13255 137 ESETIMRHASKYSLALVDEL 156 (156)
Q Consensus 137 ~~~~il~~~~~~slvliDE~ 156 (156)
++..-+.......+++|||+
T Consensus 105 ~~~~~~~~~~~~~vl~iDe~ 124 (195)
T 1jbk_A 105 GVLNDLAKQEGNVILFIDEL 124 (195)
T ss_dssp HHHHHHHHSTTTEEEEEETG
T ss_pred HHHHHHhhcCCCeEEEEeCH
Confidence 33333334556789999996
No 12
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=61.01 E-value=4.5 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCCceEEeccC
Q psy13255 135 LTESETIMRHASKYSLALVDEL 156 (156)
Q Consensus 135 ~~~~~~il~~~~~~slvliDE~ 156 (156)
+.++...+.......+++|||+
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~ 124 (187)
T 2p65_A 103 LKSILKEVQDAEGQVVMFIDEI 124 (187)
T ss_dssp HHHHHHHHHHTTTSEEEEETTG
T ss_pred HHHHHHHHHhcCCceEEEEeCH
Confidence 3333334444455689999995
No 13
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=51.62 E-value=8.6 Score=26.01 Aligned_cols=12 Identities=25% Similarity=-0.022 Sum_probs=9.0
Q ss_pred hhhhchhHHHHH
Q psy13255 84 LERMLPSSTFLS 95 (156)
Q Consensus 84 ~~n~~gk~~~la 95 (156)
++|.+|||+++.
T Consensus 16 G~nGsGKSTl~~ 27 (171)
T 4gp7_A 16 GSSGSGKSTFAK 27 (171)
T ss_dssp CCTTSCHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 478888887776
No 14
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=44.71 E-value=5.8 Score=26.45 Aligned_cols=15 Identities=20% Similarity=-0.148 Sum_probs=10.4
Q ss_pred hhhhchhHHHHHhhC
Q psy13255 84 LERMLPSSTFLSFQG 98 (156)
Q Consensus 84 ~~n~~gk~~~laq~g 98 (156)
+++-.||++++.-++
T Consensus 43 G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 43 GEEGAGKSHLLQAWV 57 (149)
T ss_dssp SSSTTTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 488899987654443
No 15
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=32.81 E-value=20 Score=29.96 Aligned_cols=14 Identities=21% Similarity=-0.009 Sum_probs=11.0
Q ss_pred hhhhchhHHHHHhh
Q psy13255 84 LERMLPSSTFLSFQ 97 (156)
Q Consensus 84 ~~n~~gk~~~laq~ 97 (156)
++|-+|||++|..+
T Consensus 110 GpNGaGKSTLLkiL 123 (608)
T 3j16_B 110 GTNGIGKSTALKIL 123 (608)
T ss_dssp CCTTSSHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 48999999887654
No 16
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=29.84 E-value=42 Score=27.42 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=10.4
Q ss_pred hhhhchhHHHHHhh
Q psy13255 84 LERMLPSSTFLSFQ 97 (156)
Q Consensus 84 ~~n~~gk~~~laq~ 97 (156)
++|-+|||++|.-+
T Consensus 32 GpNGaGKSTLlkiL 45 (538)
T 3ozx_A 32 GKNGVGKTTVLKIL 45 (538)
T ss_dssp CCTTSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHH
Confidence 38888888877554
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=27.07 E-value=77 Score=22.68 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=8.2
Q ss_pred CCceEEeccC
Q psy13255 147 KYSLALVDEL 156 (156)
Q Consensus 147 ~~slvliDE~ 156 (156)
..++++|||+
T Consensus 110 ~~~vl~iDEi 119 (285)
T 3h4m_A 110 APSIIFIDEI 119 (285)
T ss_dssp CSEEEEEETT
T ss_pred CCeEEEEECH
Confidence 4589999996
No 18
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.00 E-value=47 Score=28.63 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccC
Q psy13255 131 YLAELTESETIMRHASKYSLALVDEL 156 (156)
Q Consensus 131 F~~e~~~~~~il~~~~~~slvliDE~ 156 (156)
|-..+..+-.-+.....+.+++|||+
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi 272 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDEL 272 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 33334443333333345689999996
No 19
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=23.89 E-value=28 Score=25.48 Aligned_cols=16 Identities=13% Similarity=-0.290 Sum_probs=11.8
Q ss_pred hhhhhchhHHHHHhhC
Q psy13255 83 DLERMLPSSTFLSFQG 98 (156)
Q Consensus 83 ~~~n~~gk~~~laq~g 98 (156)
.++|-+||++++..+.
T Consensus 31 ~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMI 46 (261)
T ss_dssp ECSTTCSHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHH
Confidence 3599999998765543
No 20
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=22.02 E-value=51 Score=23.27 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=9.2
Q ss_pred CCCceEEeccC
Q psy13255 146 SKYSLALVDEL 156 (156)
Q Consensus 146 ~~~slvliDE~ 156 (156)
....|||+||+
T Consensus 119 ~~yDlvILDEi 129 (196)
T 1g5t_A 119 PLLDMVVLDEL 129 (196)
T ss_dssp TTCSEEEEETH
T ss_pred CCCCEEEEeCC
Confidence 45699999995
No 21
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=21.50 E-value=98 Score=18.89 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEecc
Q psy13255 132 LAELTESETIMRHASKYSLALVDE 155 (156)
Q Consensus 132 ~~e~~~~~~il~~~~~~slvliDE 155 (156)
-.|+.+++++++..+++.++.+-+
T Consensus 56 r~e~~~l~~~I~~iDp~AFi~i~~ 79 (96)
T 3hlu_A 56 KATLVKVRNLLKEVDPDAFMIVST 79 (96)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEC-
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEe
Confidence 458999999999999999988754
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=21.46 E-value=11 Score=26.18 Aligned_cols=13 Identities=0% Similarity=-0.220 Sum_probs=9.2
Q ss_pred hhhhchhHHHHHh
Q psy13255 84 LERMLPSSTFLSF 96 (156)
Q Consensus 84 ~~n~~gk~~~laq 96 (156)
++...||++++..
T Consensus 59 G~~G~GKT~la~~ 71 (242)
T 3bos_A 59 GPVKSGRTHLIHA 71 (242)
T ss_dssp CSTTSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 4788899866543
Done!