Your job contains 1 sequence.
>psy13255
ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA
ISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGA
KDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13255
(156 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 181 2.3e-28 2
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 181 2.4e-28 2
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 183 5.0e-28 2
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 181 1.3e-27 2
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 194 1.3e-27 2
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 183 2.1e-27 2
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 174 1.6e-26 2
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 174 1.9e-26 2
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 174 2.4e-26 2
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 174 3.0e-26 2
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 176 3.0e-26 2
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 174 4.1e-26 2
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 174 4.2e-26 2
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 174 4.7e-26 2
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 174 9.6e-26 2
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 155 6.4e-23 2
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 164 4.3e-22 2
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 164 4.3e-22 2
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 156 8.3e-22 2
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 153 1.1e-21 2
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 147 1.3e-21 2
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 151 1.4e-21 2
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 149 1.6e-21 2
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 158 2.7e-21 2
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 145 3.4e-21 2
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 146 4.1e-21 2
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 140 9.6e-21 2
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 151 2.2e-20 2
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 150 6.0e-20 2
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 150 7.9e-20 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 162 9.6e-20 2
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 150 1.2e-19 2
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 143 2.0e-19 2
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 149 2.2e-19 2
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 149 2.2e-19 2
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 137 6.5e-19 2
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 143 7.9e-19 2
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 138 1.5e-18 2
ZFIN|ZDB-GENE-060526-307 - symbol:msh3 "mutS homolog 3 (E... 132 1.1e-17 2
SGD|S000001162 - symbol:MSH1 "DNA-binding protein involve... 135 1.4e-17 2
UNIPROTKB|F1RF09 - symbol:MSH3 "Uncharacterized protein" ... 145 2.5e-17 2
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 133 3.9e-17 2
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 136 4.6e-17 2
UNIPROTKB|Q75D87 - symbol:AGOS_ABR137W "ABR137Wp" species... 125 4.6e-17 2
UNIPROTKB|Q23AD6 - symbol:TTHERM_00426230 "MutS domain II... 125 5.5e-17 2
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 131 1.2e-16 2
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 126 2.0e-16 2
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 132 2.4e-16 2
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 135 2.4e-16 2
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 156 2.6e-16 2
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 121 4.1e-16 2
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 125 7.8e-16 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 132 8.9e-16 2
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 132 8.9e-16 2
TAIR|locus:2130913 - symbol:MSH4 "AT4G17380" species:3702... 143 3.3e-15 2
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 125 3.6e-15 2
WB|WBGene00001872 - symbol:him-14 species:6239 "Caenorhab... 117 5.4e-15 2
UNIPROTKB|Q23405 - symbol:him-14 "MutS protein homolog hi... 117 5.4e-15 2
DICTYBASE|DDB_G0283957 - symbol:msh4 "mutS homolog" speci... 116 7.0e-15 2
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 119 8.7e-15 2
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 122 1.4e-14 2
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 141 1.7e-14 2
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 124 1.9e-14 3
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 119 2.8e-14 2
UNIPROTKB|Q7S0U7 - symbol:NCU07407 "Putative uncharacteri... 143 2.9e-14 2
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 117 5.9e-14 2
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 134 1.9e-13 2
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 125 1.0e-12 2
RGD|1309190 - symbol:Msh4 "mutS homolog 4 (E. coli)" spec... 114 1.4e-12 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 124 1.6e-12 2
CGD|CAL0005874 - symbol:orf19.496 species:5476 "Candida a... 130 2.0e-12 2
MGI|MGI:1860077 - symbol:Msh4 "mutS homolog 4 (E. coli)" ... 113 3.4e-12 2
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 124 4.2e-12 2
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 113 4.7e-12 2
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 124 5.2e-12 2
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 124 5.4e-12 2
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 176 5.4e-12 1
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 124 5.4e-12 2
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 112 7.2e-12 2
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 112 7.8e-12 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 109 9.6e-12 2
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 127 1.1e-11 2
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 117 1.1e-11 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 127 1.1e-11 2
UNIPROTKB|E1BK76 - symbol:MSH4 "Uncharacterized protein" ... 111 1.2e-11 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 169 1.7e-11 1
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 117 2.3e-11 2
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 109 3.4e-11 2
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 167 4.4e-11 1
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 109 4.8e-11 2
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 110 5.7e-11 2
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 118 1.2e-10 2
UNIPROTKB|A8J8E2 - symbol:CHLREDRAFT_120228 "Predicted pr... 149 1.2e-10 1
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 163 1.2e-10 1
UNIPROTKB|I3LUG7 - symbol:LOC100624532 "Uncharacterized p... 161 1.5e-10 1
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 162 1.5e-10 1
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 111 1.6e-10 2
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 160 2.4e-10 1
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 160 2.4e-10 1
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 152 1.6e-09 1
WARNING: Descriptions of 46 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 181 (68.8 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 41/89 (46%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD L NL VL N N TTEGTL+E++D C T FGKR+L+ L PL N +I R D
Sbjct: 715 VLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRLD 774
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A+ LL ++ +K L DLER+L
Sbjct: 775 AVEDLLAVPAKLTEITEHLKKLPDLERLL 803
Score = 179 (68.1 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 31/59 (52%), Positives = 46/59 (77%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I++HA+++SL LVDEL
Sbjct: 1138 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDEL 1196
Score = 36 (17.7 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQDA 60
N + + + T L E+ + T G KR ++ K L L ++R+DA
Sbjct: 956 NRYQMEIPETATSRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDA 1008
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 181 (68.8 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 41/89 (46%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD L NL VL N N TTEGTL+E++D C T FGKR+L+ L PL N +I R D
Sbjct: 731 VLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRLD 790
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A+ LL ++ +K L DLER+L
Sbjct: 791 AVEDLLAVPAKLTEITEHLKKLPDLERLL 819
Score = 179 (68.1 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 31/59 (52%), Positives = 46/59 (77%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I++HA+++SL LVDEL
Sbjct: 1154 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDEL 1212
Score = 36 (17.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQDA 60
N + + + T L E+ + T G KR ++ K L L ++R+DA
Sbjct: 972 NRYQMEIPETATSRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDA 1024
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 183 (69.5 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+SL LTPVDR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL L+DEL
Sbjct: 1166 GCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILLHATNHSLVLLDEL 1224
Score = 174 (66.3 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDNT-TEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD LANL +L NS EGTL+E+LD C T FGKR+L+ + PL N +I R D
Sbjct: 735 VLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSSIGDRLD 794
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A+ L+ T ++ +K L DLER+L
Sbjct: 795 ALEDLMGAPSQTSEVTDLLKKLPDLERLL 823
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 181 (68.8 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTPVDR+FTR+GA D + +ST+ EL+E+ +I+RHA+ +SL LVDEL
Sbjct: 1158 GCYVPAELCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDEL 1216
Score = 172 (65.6 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 39/89 (43%), Positives = 54/89 (60%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L+NL + N N +TEGTL+E+LD C T FGKR+L+ L PL + AI R D
Sbjct: 734 VLDAVTLSNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSAISDRLD 793
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 794 AIEDLMAVPDKVAEVADLLKKLPDLERLL 822
Score = 41 (19.5 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQDA 60
N + L +N L E+ + T G KR + K L+NL ++R+DA
Sbjct: 975 NRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKVIEKKLSNLINAEERRDA 1027
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 194 (73.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 41/89 (46%), Positives = 54/89 (60%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
ILD L NL + NS D +TEGTL + +D C T+FGKRM R + +PL N +AI RQ
Sbjct: 645 ILDGQCLVNLEIFNNSTDGSTEGTLFKLMDRCTTAFGKRMFRQWICRPLANKNAIVDRQK 704
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L D +++ A + L DLERM+
Sbjct: 705 AIEFLRDSPETLQKVTAILNKLPDLERMI 733
Score = 158 (60.7 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC V A S ++ VDRIFTR+GA DN+ QST++ EL E+ ++++A+K SL ++DEL
Sbjct: 1050 GCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDEL 1108
Score = 47 (21.6 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 22 GTLIEQLDHCVTSFGKRMLRAQLVKPLTNL-DAIKQRQ-DAI---SVLLDQKHITEQMRA 76
G + ++D TS G M + Q K N D+I QR+ +I LLD++ IT+Q
Sbjct: 432 GHKVAKVDQMETSIG--MAKRQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTST 489
Query: 77 KMKDLRDLE 85
+ +++ E
Sbjct: 490 YLMAIKENE 498
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 183 (69.5 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTPVDR+FTR+GA D + +ST+ EL+E+ +I+RHA+ +SL LVDEL
Sbjct: 1155 GCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDEL 1213
Score = 168 (64.2 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N N +TEGTL+E+LD C T FGKR+L+ L PL + AI R D
Sbjct: 731 VLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSAISDRLD 790
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A+ L+ ++ +K L DLER+L
Sbjct: 791 AVEDLMAVPDKVTEVADLLKKLPDLERLL 819
Score = 37 (18.1 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQD 59
N + L +N L E+ + T G KR + K L NL ++R+D
Sbjct: 972 NRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD 1023
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 174 (66.3 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 855 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDEL 913
Score = 166 (63.5 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N N +TEGTL+E++D C T FGKR+L+ L PL N AI R D
Sbjct: 432 VLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLD 491
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 492 AIEDLMVVPDKISEVVELLKKLPDLERLL 520
Score = 42 (19.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQD 59
N + L +N T L E+ + T G KR + K L NL ++R+D
Sbjct: 673 NRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD 724
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 174 (66.3 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 1157 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDEL 1215
Score = 168 (64.2 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N N +TEGTL+E++D C T FGKR+L+ L PL N AI R D
Sbjct: 733 VLDAVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPHAINDRLD 792
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 793 AIEDLMVVPDKISEVVDLLKKLPDLERLL 821
Score = 38 (18.4 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQDA 60
N + L +N L E+ + T G KR + K L NL ++R+DA
Sbjct: 974 NRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLGNLINAEERRDA 1026
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 174 (66.3 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 1027 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDEL 1085
Score = 166 (63.5 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N N +TEGTL+E++D C T FGKR+L+ L PL N AI R D
Sbjct: 604 VLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLD 663
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 664 AIEDLMVVPDKISEVVELLKKLPDLERLL 692
Score = 42 (19.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQD 59
N + L +N T L E+ + T G KR + K L NL ++R+D
Sbjct: 845 NRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD 896
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 174 (66.3 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 1157 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDEL 1215
Score = 166 (63.5 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N N +TEGTL+E++D C T FGKR+L+ L PL N AI R D
Sbjct: 734 VLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLD 793
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 794 AIEDLMVVPDKISEVVELLKKLPDLERLL 822
Score = 42 (19.8 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQD 59
N + L +N T L E+ + T G KR + K L NL ++R+D
Sbjct: 975 NRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD 1026
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 176 (67.0 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDNT-TEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
ILD +L NL + N+ N EGTL L+ C+T FGKR+ R + PL N+ + +R D
Sbjct: 644 ILDGQSLINLEIFANTANGGPEGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLD 703
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A+ +L D + EQ ++M + DLER++
Sbjct: 704 AVDMLNDDHSLREQFSSQMSKMPDLERLI 732
Score = 163 (62.4 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
RM + ++ GC VPA S LTPVDRI +R+GA DN+ AQST+ EL+E++ I+ A
Sbjct: 1008 RMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEA 1067
Query: 146 SKYSLALVDEL 156
+ SL ++DEL
Sbjct: 1068 TPRSLVILDEL 1078
Score = 34 (17.0 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 45 VKPLTNL-DA-IKQRQ-DAISVLLDQKHITEQMRAKMKDLRDLERML 88
+KP T DA + +R+ D + + E AK+K+ RD + ++
Sbjct: 560 LKPGTEFWDADVARRELDCSGYFVSGEGQEEVWPAKLKEARDKDLLM 606
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 174 (66.3 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 1086 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDEL 1144
Score = 164 (62.8 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L+NL + N N +TEGTL+E++D C T FGKR+L+ L PL + AI R D
Sbjct: 662 VLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAINDRLD 721
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ + +K L DLER+L
Sbjct: 722 AIEDLMVVPDKISDVADLLKKLPDLERLL 750
Score = 36 (17.7 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQD 59
N + L +N L E+ + T G KR + K L NL ++R+D
Sbjct: 903 NRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD 954
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 174 (66.3 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 1076 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDEL 1134
Score = 164 (62.8 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L+NL + N N +TEGTL+E++D C T FGKR+L+ L PL + AI R D
Sbjct: 652 VLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAINDRLD 711
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ + +K L DLER+L
Sbjct: 712 AIEDLMVVPDKISDVADLLKKLPDLERLL 740
Score = 36 (17.7 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQD 59
N + L +N L E+ + T G KR + K L NL ++R+D
Sbjct: 893 NRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD 944
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 174 (66.3 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDNT-TEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD +L NL V +NS N EGTL L+ C+T FGKR+ R + PL N+ I +R D
Sbjct: 625 VLDGQSLINLEVFSNSVNGGPEGTLFNLLNRCITPFGKRLFRQWVCHPLCNIKKINERLD 684
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A+ +L + I EQ + M + DLER++
Sbjct: 685 AVDMLNADRSILEQFSSLMSKMPDLERLI 713
Score = 163 (62.4 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
RM + ++ GC VPA S LTPVDRI +R+GA DN+ AQST+ EL+E++ I+ A
Sbjct: 989 RMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEA 1048
Query: 146 SKYSLALVDEL 156
+ SL ++DEL
Sbjct: 1049 TPRSLVILDEL 1059
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 174 (66.3 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA+ LTP+DR+FTR+GA D + +ST+ EL+E+ +I+ HA+ +SL LVDEL
Sbjct: 1133 GCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDEL 1191
Score = 161 (61.7 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N+ N + EGTL+E++D C T FGKR+L+ L PL N AI R D
Sbjct: 709 VLDAVTLNNLEIFLNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRLD 768
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 769 AIEDLMVVPDKISEVVDLLKKLPDLERLL 797
Score = 42 (19.8 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 9 NLHVLTNSDNTTEGTLIEQLDHCVTSFG-KRMLRAQLVKPLTNLDAIKQRQD 59
N + L +N T L E+ + T G KR + K L NL ++R+D
Sbjct: 950 NRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRD 1001
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 155 (59.6 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G +PA S L+ VDRIFTR+GA+D++ ST+L EL E+ I++HA+ +SL L+DEL
Sbjct: 981 GAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDEL 1039
Score = 152 (58.6 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+T L+NL ++ E +L+ LDHC T FGKR+L L P ++ IK+RQDA
Sbjct: 580 VLDATTLSNLRIIGE-----EHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDA 634
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L+ +++RA + + D ER L
Sbjct: 635 IGELIRMPTELQEVRALLAPMPDFERNL 662
Score = 43 (20.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 24 LIEQLDH--C-VTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQK----HITEQMRA 76
L+EQ H C +T FG R QL P ++ + +K + T + RA
Sbjct: 790 LVEQERHFGCRITYFGSDKKRYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRA 849
Query: 77 KMKDLRDLE 85
+KD++ E
Sbjct: 850 LLKDMQHAE 858
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 164 (62.8 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 84 LERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMR 143
L R L+ G VPA S+ LTP+DRIFTR+GA D + +ST+ EL E++ +++
Sbjct: 971 LMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLK 1030
Query: 144 HASKYSLALVDEL 156
+A+K+SL LVDEL
Sbjct: 1031 NATKHSLLLVDEL 1043
Score = 135 (52.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 32/90 (35%), Positives = 53/90 (58%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD TAL NL+++ N ++ +L ++ C T FG+R+LR+ L++P + ++QRQ A
Sbjct: 572 ILDGTALENLNIVPNGRDSHLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQKA 631
Query: 61 ISVLL--DQKHITEQMRAKMKDLRDLERML 88
I L+ D A +K + DL+R+L
Sbjct: 632 IKWLVSPDASSFMTTATATLKKIPDLDRLL 661
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 164 (62.8 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 84 LERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMR 143
L R L+ G VPA S+ LTP+DRIFTR+GA D + +ST+ EL E++ +++
Sbjct: 971 LMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLK 1030
Query: 144 HASKYSLALVDEL 156
+A+K+SL LVDEL
Sbjct: 1031 NATKHSLLLVDEL 1043
Score = 135 (52.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 32/90 (35%), Positives = 53/90 (58%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD TAL NL+++ N ++ +L ++ C T FG+R+LR+ L++P + ++QRQ A
Sbjct: 572 ILDGTALENLNIVPNGRDSHLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQKA 631
Query: 61 ISVLL--DQKHITEQMRAKMKDLRDLERML 88
I L+ D A +K + DL+R+L
Sbjct: 632 IKWLVSPDASSFMTTATATLKKIPDLDRLL 661
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 156 (60.0 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 28/59 (47%), Positives = 46/59 (77%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+S ++ P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++ SL L+DE+
Sbjct: 644 GSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEI 702
Score = 137 (53.3 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD+ NL + N T+ TL E LDHC T G RML+ + +P+ + + QR DA
Sbjct: 273 ILDAATRRNLELTHNLAGGTDNTLAEVLDHCATPMGSRMLKRWIHQPMRDNATLNQRLDA 332
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I+ L + + ++ +K + D+ER+L
Sbjct: 333 ITELKETA-LYGELHPVLKQIGDIERIL 359
Score = 37 (18.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 129 STYLAELTESETIMRHASKYSLALVD 154
+T+ ELTE ++ H + L V+
Sbjct: 733 ATHYFELTELPNVLPHLANVHLDAVE 758
Score = 34 (17.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 121 KDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
+ L A+ + EL + E + ++ +LAL +L
Sbjct: 499 RQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQL 534
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 153 (58.9 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 31/89 (34%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD L NL + NS D T +GTL + ++ +T GKR +R ++ PL + I++R D
Sbjct: 543 VLDGITLQNLEIFANSFDGTDKGTLFKLVNRAITPMGKRQMRTWVMHPLLRKEHIEERLD 602
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
++ LL++ I + + + + L DLER+L
Sbjct: 603 SVDQLLNEMPIRDLLESSLTGLPDLERLL 631
Score = 142 (55.0 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
RM + ++ GC VP + L+P+DRI TR+GA DN+ +ST+ EL+E+ I+ A
Sbjct: 921 RMTCIAVIMAQLGCYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELSETRKILDMA 980
Query: 146 SKYSLALVDEL 156
+ +L ++DEL
Sbjct: 981 TNRTLIVLDEL 991
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 147 (56.8 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ G VPA+ T+ VD IFTRMGA DN+ QST++ ELT++ I+R A+ SL
Sbjct: 913 TIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATSQSLV 972
Query: 152 LVDEL 156
++DEL
Sbjct: 973 ILDEL 977
Score = 147 (56.8 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 2 LDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++ T L NL +L N +D T+G+L+ LDH TSFG+R L+ + +PL L I R DA
Sbjct: 537 INGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDA 596
Query: 61 IS-VLLDQKHITEQMRAKMKDLRDLERMLPS 90
+S VL + + Q+ ++ L D+ER L S
Sbjct: 597 VSEVLHSESSVFGQIENHLRKLPDIERGLCS 627
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 151 (58.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 37/91 (40%), Positives = 55/91 (60%)
Query: 2 LDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++ T L NL +L N +D T+G+L+ LDH TSFG+R L+ +V+PL L I R DA
Sbjct: 460 INGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVVQPLLKLREINARLDA 519
Query: 61 IS-VLLDQKHITEQMRAKMKDLRDLERMLPS 90
+S VL + + Q+ ++ L D+ER L S
Sbjct: 520 VSEVLHSESSVFGQIENHLRKLPDIERGLCS 550
Score = 142 (55.0 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ G VPA+ T+ VD IFTRMGA DN+ QST++ EL ++ I+R A+ SL
Sbjct: 836 TIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELMDTAEIIRQATSQSLV 895
Query: 152 LVDEL 156
++DEL
Sbjct: 896 ILDEL 900
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 149 (57.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 2 LDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+D L NL + +N+ D + GTL + L+HC+T GKR+LR + PL ++DAI +R D
Sbjct: 689 MDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCITPCGKRLLRRWICHPLKDIDAINERLDI 748
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
+ + + ++ + DLER+L
Sbjct: 749 VEGFIQNCGLGSVTLEHLRKVPDLERLL 776
Score = 145 (56.1 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP S LT D IFTR+GA D + +ST+L E TE+ +I+ +A++ SL L+DEL
Sbjct: 995 GCYVPCQSCELTLADAIFTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDEL 1053
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 158 (60.7 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L++ G VPA + L P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++ SL
Sbjct: 639 TLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLV 698
Query: 152 LVDEL 156
L+DE+
Sbjct: 699 LMDEV 703
Score = 130 (50.8 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL ++TN +L LDH T G R+LR + +PL + ++QRQ+A+
Sbjct: 274 IDANTRRNLELITNLQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAV 333
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
S LL++++ +E + ++ + DLER++
Sbjct: 334 STLLEKRNYSE-IYENLRHIGDLERIV 359
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 145 (56.1 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ G VPA+ T+ VD IFTRMGA DN+ QST++ ELT++ I+R A+ SL
Sbjct: 901 TVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATPQSLV 960
Query: 152 LVDEL 156
++DEL
Sbjct: 961 ILDEL 965
Score = 145 (56.1 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 2 LDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++ T L NL +L N +D T+G+L LDH TSFG+R L+ + +PL L I R DA
Sbjct: 525 INGTTLRNLEILQNQTDMKTKGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDA 584
Query: 61 IS-VLLDQKHITEQMRAKMKDLRDLERMLPS 90
+S VL + + Q+ ++ L D+ER L S
Sbjct: 585 VSEVLHSESSVFGQIENHLRKLPDIERGLCS 615
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 146 (56.5 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 2 LDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++ T L NL ++ N +D T+G+L+ LDH TSFG+R L+ + +PL L I R DA
Sbjct: 495 INGTTLRNLEMVQNQTDMKTKGSLLWVLDHTKTSFGRRKLKNWVTQPLLKLREINARLDA 554
Query: 61 IS-VLLDQKHITEQMRAKMKDLRDLERMLPS 90
+S VL + + EQ+ ++ L D+ER L S
Sbjct: 555 VSDVLHSESSVFEQIENLLRKLPDVERGLCS 585
Score = 143 (55.4 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ G VPA+ T+ VD IFTRMGA DN+ +ST++ +LT++ I+R AS SL
Sbjct: 867 TIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLV 926
Query: 152 LVDEL 156
++DEL
Sbjct: 927 ILDEL 931
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 140 (54.3 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ G VPA+ T+ VD IFTRMGA DN+ +ST++ ELT++ I+R A+ SL
Sbjct: 373 TVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRATSRSLV 432
Query: 152 LVDEL 156
++DEL
Sbjct: 433 ILDEL 437
Score = 139 (54.0 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 7 LANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAIS-VL 64
+ NL +L N +D T+G+L+ LDH TSFG+R L+ +++PL I R DA+S +L
Sbjct: 1 MKNLEILQNQTDLKTKGSLLWVLDHTKTSFGRRRLKKWVIQPLMKCSEINARLDAVSEIL 60
Query: 65 LDQKHITEQMRAKMKDLRDLERMLPS 90
L + + Q++ + L DLER L S
Sbjct: 61 LSESSVFGQIQNLLCKLPDLERGLCS 86
Score = 48 (22.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 41 RAQLVKPLTNLDAIKQRQDAISVLLD--QKHITEQMRAKMKD 80
+ QL K LT+ I+++++ I +L Q H+ E +R ++K+
Sbjct: 158 KTQLFKDLTDFPVIRKKKEEILDVLSKIQLHLLE-IRKQIKN 198
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 151 (58.2 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 2 LDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++ T L NL +L N +D T G+L+ LDH TSFG+R L+ + +PL L I R DA
Sbjct: 495 INGTTLRNLEILQNQTDMKTRGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLRDINARLDA 554
Query: 61 IS-VLLDQKHITEQMRAKMKDLRDLERMLPS 90
IS VL + + EQ+ ++ L D+ER L S
Sbjct: 555 ISDVLHSESSVFEQIENLLRKLPDVERGLCS 585
Score = 131 (51.2 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ T+ VD IFTR GA DN+ +ST++ ELT++ I++ A++ SL ++DEL
Sbjct: 877 GSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDEL 935
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 150 (57.9 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 3 DSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAIS 62
D + NL +L N ++ + +L+ +D T+ G R L+ +L KPL NL AI R DA+
Sbjct: 250 DESTRKNLEILRNREDNSS-SLLGIIDFTQTAMGARKLKEELTKPLLNLKAIADRLDAVE 308
Query: 63 VLLDQKHITEQMRAKMKDLRDLERM 87
+L++ + E +R +K+L DLER+
Sbjct: 309 ILVNDYELRENLRENLKNLYDLERL 333
Score = 125 (49.1 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + VD+I TR+GA D+L+ QST++ E+ E I+R+A+ SL L+DE+
Sbjct: 623 GSFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDEV 681
Score = 36 (17.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 50 NLDAIKQRQDAISVLLDQKHITEQMRAKMKDLRDLERML 88
NL+ ++ R+D S LL T+ K +L + L
Sbjct: 256 NLEILRNREDNSSSLLGIIDFTQTAMGARKLKEELTKPL 294
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 150 (57.9 bits), Expect = 7.9e-20, Sum P(2) = 7.9e-20
Identities = 34/91 (37%), Positives = 57/91 (62%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
IL S+A+ +L + NS D +++G+L+ LDH T++G R L+ + KPL N+D I+QR D
Sbjct: 422 ILPSSAIESLDIFENSTDRSSKGSLLWVLDHTRTNYGLRNLKNWIAKPLINIDQIQQRLD 481
Query: 60 AISVLLDQ--KHITEQMRAKMKDLRDLERML 88
A+ + + E + ++D +DLER+L
Sbjct: 482 AVQCISTEVGNIFIESLNNMLRDGQDLERIL 512
Score = 126 (49.4 bits), Expect = 7.9e-20, Sum P(2) = 7.9e-20
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA + D+IFTR+GA DNL ST+ E+TE I+R +++ SL L+DE+
Sbjct: 819 GCYVPAQEAEFSIFDQIFTRIGAYDNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEV 877
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 162 (62.1 bits), Expect = 9.6e-20, Sum P(2) = 9.6e-20
Identities = 28/63 (44%), Positives = 48/63 (76%)
Query: 94 LSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALV 153
+++ G VPA + + P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A++YSL L+
Sbjct: 633 MAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLM 692
Query: 154 DEL 156
DE+
Sbjct: 693 DEI 695
Score = 111 (44.1 bits), Expect = 9.6e-20, Sum P(2) = 9.6e-20
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I+D+ NL + N E TL LD VT G RML+ L P+ + + +RQ
Sbjct: 268 IMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I L D T ++ ++ + DLER+L
Sbjct: 328 IGALQD---FTAGLQPVLRQVGDLERIL 352
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 150 (57.9 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++D AL NL + + +G+LI +DH VT+ G RML+ L P+ + I RQDA
Sbjct: 269 LIDGPALRNLELFSTQSGEKKGSLISTIDHTVTAMGSRMLKRYLAFPVACHNVINGRQDA 328
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPAD 104
+ + + + E +R + D+ER+L T + F C P D
Sbjct: 329 VEFFVSNRSLCEVIRGVINGFPDIERIL---TRVKFSKCS-PKD 368
Score = 122 (48.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 94 LSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALV 153
L+ G VPA+ + +D+IF+R+GA DN++ ST++ E+ E+ I+ A+ SL ++
Sbjct: 634 LAHIGSFVPAEHAHIGVIDKIFSRVGASDNIALGHSTFMVEMVETAAILNQATSKSLVIL 693
Query: 154 DEL 156
DE+
Sbjct: 694 DEI 696
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 143 (55.4 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD IFTR+GA D + +ST+L E TE+ +++++A++ SL ++DEL
Sbjct: 876 GCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDEL 934
Score = 130 (50.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 2 LDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+D + NL + NS D GTL + LD+CV+ GKR+LR + PL ++++I +R D
Sbjct: 555 IDGQTMVNLEIFNNSCDGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDV 614
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
+ + + L DLER+L
Sbjct: 615 VEEFTANSESMQITGQYLHKLPDLERLL 642
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 149 (57.5 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPAD ++ VDRIFTR+GA DNL+ QST++ E+ E+ I+R+A+ SL ++DE+
Sbjct: 644 GSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEI 702
Score = 121 (47.7 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 1 ILDSTALANLHV-LTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD ++ NL + T D G+L+ LD VT+ G R L+ + PL +++ I +R D
Sbjct: 269 VLDESSRRNLELNATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINERLD 328
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERM 87
A+ L+ + +RA + + DLER+
Sbjct: 329 AVEELVADAEFRQGVRAALDGVYDLERL 356
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 149 (57.5 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPAD ++ VDRIFTR+GA DNL+ QST++ E+ E+ I+R+A+ SL ++DE+
Sbjct: 644 GSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEI 702
Score = 121 (47.7 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 1 ILDSTALANLHV-LTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD ++ NL + T D G+L+ LD VT+ G R L+ + PL +++ I +R D
Sbjct: 269 VLDESSRRNLELNATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINERLD 328
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERM 87
A+ L+ + +RA + + DLER+
Sbjct: 329 AVEELVADAEFRQGVRAALDGVYDLERL 356
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 137 (53.3 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 27/65 (41%), Positives = 45/65 (69%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L+ G VPADS + VDR+F+R+GA DN++ +ST++ E+ E+ I+ +A+ SL
Sbjct: 633 TILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVEMMETANIVNNATCRSLV 692
Query: 152 LVDEL 156
++DE+
Sbjct: 693 ILDEV 697
Score = 128 (50.1 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 23/87 (26%), Positives = 53/87 (60%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD++ + L ++ + + +L++ +D T+ GKR+L++ +V PL +++ I+ RQD +
Sbjct: 270 LDASTIRGLELIESQTPGEKNSLLQVIDQTCTAGGKRLLKSYIVSPLISVEEIQARQDKV 329
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
Q+ + +++R ++ ++ D ER L
Sbjct: 330 EFFFIQEELRKKVRTELANIPDAERAL 356
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 143 (55.4 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA L DRIFTR+GA D+L+ QST++ E+TE+ I+ HA+ SL L+DE+
Sbjct: 708 GAFVPARGAVLGVADRIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEI 766
Score = 122 (48.0 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 1 ILDSTALANLHVL-TNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
ILD NL + T D G+L+ LD T G R LR L++PL + AI +RQD
Sbjct: 332 ILDHQTRRNLELTQTVRDGAQYGSLLWALDRTRTVMGGRALRRWLLQPLLDTRAIGRRQD 391
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERM 87
+++ L D+ + E+++ ++ + DLER+
Sbjct: 392 SVAELYDEGLLRERLQRILESVYDLERL 419
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 138 (53.6 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 94 LSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALV 153
L+ G VPA L+ VDRIFTR+G+ D+L+G +ST++ E++E+ I+ +A+ SL L+
Sbjct: 632 LAHIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLM 691
Query: 154 DEL 156
DE+
Sbjct: 692 DEV 694
Score = 124 (48.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILD + NL + N E TL +D C T+ R++ L +PL + ++ RQ++
Sbjct: 265 ILDGASRRNLELDINLSGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLEARQES 324
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I+ LL++ E ++ ++K++ DLER+L
Sbjct: 325 IACLLERYRF-ENLQPQLKEIGDLERIL 351
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 132 (51.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 1 ILDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+L + + NL +L N + + +G+L+ LDH T FGKR+LR + +PL ++ I+ RQ+
Sbjct: 495 LLSAATMKNLEILCNQTTGSVKGSLLWVLDHTQTLFGKRLLRKWVSQPLKSVIDIQARQE 554
Query: 60 AIS-VLLDQKHITEQMRAKMKDLRDLERMLPS 90
A++ +L + + +++ + L DLER L S
Sbjct: 555 AVAEILSSESSVLPSIQSLLTRLPDLERGLCS 586
Score = 123 (48.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R + T ++ G VPA ++ VD I+ RMGA DN+S +ST++ EL E+ ++ A
Sbjct: 863 RQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGRSTFMEELLETSDVLACA 922
Query: 146 SKYSLALVDEL 156
+ SL ++DEL
Sbjct: 923 TSRSLVILDEL 933
Score = 41 (19.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 41 RAQLVKPLTNLDAIKQRQDAI-SVLLDQKHITEQMRAKMKD 80
+ ++ LT+ I++ ++ I SVLLD ++R +K+
Sbjct: 654 KTEMFVDLTDFPVIRKTKEEIESVLLDIMEHRREVRLLLKN 694
Score = 37 (18.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 16 SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+ + + +L + H + + K L + V PL L ++Q +D +
Sbjct: 276 ASSANKSSLFSRQLHAL--YTKSTLVGEDVNPLLKLGDLEQAEDVV 319
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 135 (52.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 4 STALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISV 63
STAL LH T DN +G+L+ + VT G R+L L P +L IK+RQ ++
Sbjct: 370 STAL-ELHS-TVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAF 427
Query: 64 LLDQKHITEQMRAKMKDLRDLERMLPSSTF 93
D + ITE +R +K + DL R+L +F
Sbjct: 428 FKDNRDITETLRTMLKKVNDLSRILQKFSF 457
Score = 119 (46.9 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP + VD++F+R+G+ D+L ST++ E+ E+ I++ A++ SLA++DE+
Sbjct: 794 GCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIETSFILQGATERSLAILDEI 852
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 145 (56.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 2 LDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++ T L NL +L N +D T+G+L LDH TSFG+R L+ + +PL L I R DA
Sbjct: 525 INGTTLRNLEILQNQTDMKTKGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDA 584
Query: 61 IS-VLLDQKHITEQMRAKMKDLRDLERMLPS 90
+S V+ + + Q+ + ++ L D+ER L S
Sbjct: 585 VSEVVHSESSVFGQIESHLRKLPDIERGLCS 615
Score = 108 (43.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 103 ADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
A+ L +D F RMGA DN+ +ST++ ELT++ I+R A+ SL ++DEL
Sbjct: 914 AEESWLFVLDFFFIRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDEL 967
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 133 (51.9 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
+ L S ++ GC VPA S L D I RMG+ DNLS ST++ E+ E++ ++ A
Sbjct: 770 KQLALSAIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSVNMSTFMVEMLETKEVLSKA 829
Query: 146 SKYSLALVDEL 156
++ S+ ++DEL
Sbjct: 830 TEKSMVIIDEL 840
Score = 117 (46.2 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 1 ILDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+L AL L + N +D+T G+L LD T FG+RML+ L KPL + + I +R D
Sbjct: 403 VLSKQALEGLELFVNQTDHTPVGSLFWVLDRTYTRFGQRMLQRWLQKPLVDKENIIERLD 462
Query: 60 AISVL-LDQKHITEQMRAKMKDLRDLERML 88
A+ L + + +R + L DLE+ L
Sbjct: 463 AVEELAFNSNSQVQAIRKMLYRLPDLEKGL 492
Score = 35 (17.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 59 DAISVLLDQKH---ITEQMRA 76
DAI++L D H I+E M A
Sbjct: 13 DAINILSDNLHEGAISEDMVA 33
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 136 (52.9 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R + T ++ G VPAD + VDRIFTR+GA+D+++ QST++ E+TE+ ++ +
Sbjct: 720 RQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMTETAALLMQS 779
Query: 146 SKYSLALVDEL 156
+ SL ++DE+
Sbjct: 780 TPRSLIILDEV 790
Score = 113 (44.8 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 1 ILDSTALANLHVLTNSDNT-TEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD NL +L + + +LI LD T+ G R+LR + +PL ++ ++ RQ
Sbjct: 336 LLDPQTRRNLELLESGGRQGAKASLIAVLDRTCTAMGARLLRRWITQPLIVIEPLQVRQH 395
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
A++ L+ + ++R+ + DL D+ER L
Sbjct: 396 AVARLVAETMARLEVRSALADLPDMERAL 424
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 125 (49.1 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 24/59 (40%), Positives = 41/59 (69%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP S + VD+IF+R+G+ D+L ST++ E+ E+ +++ A+K SLA++DE+
Sbjct: 788 GCYVPCASAHIGLVDKIFSRVGSADDLYNDMSTFMVEMLETSFMLKGATKRSLAILDEI 846
Score = 124 (48.7 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 4 STALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISV 63
++A LH T DN G+L+ + VT G R+L L P +LD IKQRQ+ + +
Sbjct: 363 TSAALELHN-TFRDNLKRGSLLSAIRRTVTPSGTRLLTQWLSAPSMHLDEIKQRQNLVRL 421
Query: 64 LLDQKHITEQMRAKMKDLRDLERMLPSSTF 93
+ +T+ + A++K D+ R+L +F
Sbjct: 422 FMQNPFVTDNLIAQLKATADMTRILQKFSF 451
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 125 (49.1 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 97 QGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
QGC VPA+ + VDRIFTR+GA D L +ST+ E+ E + + + + S+A+ DEL
Sbjct: 943 QGCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIAIFDEL 1002
Score = 125 (49.1 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 34/100 (34%), Positives = 53/100 (53%)
Query: 1 ILDSTALANLHVLTNSDN--TT--------EGTLIEQLDHCVTSFGKRMLRAQLVKPLTN 50
ILDS AL +L + NS TT +GTL+ LD+ T +GKRML+ + PL +
Sbjct: 505 ILDSQALQHLEIFENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCSPLID 564
Query: 51 LDAIKQRQDAISVLLDQKHITEQMRAKMKDLRDLERMLPS 90
+ AI R DAI + + + ++ + + D+ER+ S
Sbjct: 565 ISAINDRYDAIEDIQNNLAMKDKFQYGIARYADIERLCSS 604
Score = 36 (17.7 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 51 LDAIKQRQDAISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLS 95
L++I + + D K +++M + L+ LE S T L+
Sbjct: 481 LESILNSSEYVECDFDNKQFSQRMILDSQALQHLEIFENSQTALT 525
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 131 (51.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA L D+IFTR+GA D+L QST++ E+ E++ + +A+K SL L DE+
Sbjct: 625 GCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEI 683
Score = 113 (44.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 2 LDSTALANLHVL-TNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+D + NL + T +G+L+ LD T+ G R+L+ + +PL ++ I++RQ+
Sbjct: 252 IDLYSKRNLELTETIRSKNKKGSLLWLLDETKTAMGGRLLKQWIDRPLIRVNQIEERQEM 311
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERM 87
+ L+ E +R ++K++ DLER+
Sbjct: 312 VETLMSHFFEREDLRERLKEVYDLERL 338
Score = 37 (18.1 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 21 EGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITE 72
E L +L V + R+ QL K ++ LDA++ + + + +H T+
Sbjct: 512 EYELFTELREKVKQYIPRL--QQLAKQMSELDALQ----CFATISENRHYTK 557
Score = 36 (17.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 117 RMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
R K L+ A+ EL E E ++ A L EL
Sbjct: 476 RYERKQTLTNAERYITPELKEKEALILEAENNICELEYEL 515
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 126 (49.4 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L+ G VPADS + V ++F+R+GA D+L+ +ST++ E+ E+ I+ A ++L
Sbjct: 647 TLLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDHALV 706
Query: 152 LVDEL 156
++DE+
Sbjct: 707 ILDEI 711
Score = 116 (45.9 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ NL + + G+L+ +D VT G R+L +L P NLD I R A+
Sbjct: 270 IDAATRRNLELTRSLSGERGGSLLSVIDRTVTPGGARLLEQRLGSPSRNLDVIHARLSAL 329
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
+D + +RA ++ DL+R L
Sbjct: 330 DFCIDHSTLAADLRAALRKTPDLDRAL 356
Score = 35 (17.4 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 117 RMGAKDNLSGAQSTYLAELTES 138
R GA D G Q LA L S
Sbjct: 779 RKGAADRSYGVQVAQLAGLPPS 800
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 132 (51.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 25/59 (42%), Positives = 42/59 (71%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA++ L DRIF+R+GA+++LS QST++ E+ E+ +I+ A+ SL ++DE+
Sbjct: 636 GSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEI 694
Score = 109 (43.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 2 LDSTALANLHVLTNSD-NTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+DS L+NL + +S N+ +G+L+ LD T+ G R+LR L +PL + I++R A
Sbjct: 262 IDSHTLSNLEIFRSSGGNSLKGSLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSA 321
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERM 87
+ ++ + + + D+ER+
Sbjct: 322 VDYFFEESLARASLAKALGQIADMERI 348
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 135 (52.6 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA L DRIFTRMGA+D+L+G +ST+L E+ E I+ ++ SL L+DE+
Sbjct: 612 GSFVPAQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEV 670
Score = 105 (42.0 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 25/88 (28%), Positives = 49/88 (55%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
ILDS + NL ++ L + L++ T G R+L+ ++ PL + I++R A
Sbjct: 251 ILDSATVENLSLIPGDRGKN---LFDVLNNTETPMGARLLKKWILHPLVDRKQIEERLKA 307
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
+ L++ + E+MR + ++RD+ER++
Sbjct: 308 VERLVNDRVSLEEMRNLLSNVRDVERIV 335
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 156 (60.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
RM L+ GC VPA SL +T VDRIFTR+GA D L +ST+ E+ E+ ++
Sbjct: 1014 RMACVMAILAQIGCYVPAKSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEETSNAVKQG 1073
Query: 146 SKYSLALVDEL 156
SK+SL ++DEL
Sbjct: 1074 SKHSLIIMDEL 1084
Score = 88 (36.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 1 ILDSTALANLHVLTNSDNTT------------EGTLIEQLDHCVTSFGKRMLRAQLVKPL 48
ILDS +L +L +L +S +G+L+ ++ T FG RML+ + PL
Sbjct: 551 ILDSQSLQHLEILDSSSGPVSTQKENYKLHFDDGSLLGYINKTKTPFGYRMLKNWICAPL 610
Query: 49 TNLDAIKQRQDAISVLLDQKHITEQ---MRAKMKDLRDLERM 87
+++ I R DAI L QK +E+ +R ++ L DLE+M
Sbjct: 611 MDINKIYDRYDAIEDL--QKFNSERDTFLRG-IEKLPDLEKM 649
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 121 (47.7 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP + + VD I R+GA D+ ST++ E+ E+ +I+++ASK SL +VDEL
Sbjct: 711 GCFVPCEEAEIAIVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDEL 769
Score = 119 (46.9 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 9 NLHV--LTNSDNTTEGT-LIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL 65
NL V T++ N+ + T L + L+HC T+ G R+L L +PLTN+D I +R D + L+
Sbjct: 320 NLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLI 379
Query: 66 DQKHITEQMRAK-MKDLRDLERM 87
DQ + + + ++ + + D+ R+
Sbjct: 380 DQIELRQMLTSEYLPMIPDIRRL 402
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 125 (49.1 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 33/93 (35%), Positives = 55/93 (59%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
IL + L +L + TN+ D+TT+G+L + L++ T FG R+L+ + +PL ++ IK R
Sbjct: 415 ILPANTLNSLEIFTNTTDHTTKGSLFKLLNNTKTIFGSRLLQKWVSRPLVHIQDIKDRHQ 474
Query: 60 AISVLLDQ-KHITEQMR---AKMKDLRDLERML 88
AI L + H+ + + K+K L DLE +L
Sbjct: 475 AIEDLQSEYNHVVDSISNFLTKIKYL-DLEGLL 506
Score = 113 (44.8 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC +P + T+ D IF RMGA DN+ ST++ E+ + + I+ S SL
Sbjct: 817 TVMTQIGCYLPCQNATMGIFDSIFIRMGANDNILKGYSTFMMEMLQCKNIISMMSNRSLI 876
Query: 152 LVDEL 156
++DE+
Sbjct: 877 ILDEI 881
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 132 (51.5 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA + L +D +FTRMGA DN+ +ST++ EL+E+ I++ A+ SL ++DEL
Sbjct: 900 GSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDEL 958
Score = 106 (42.4 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 1 ILDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+L+ L +L + N +D +++G+L LD T FG+RMLR + +PL + ++ R +
Sbjct: 515 LLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRVN 574
Query: 60 AISVLLDQKHIT--EQMRAKMKDLR-DLERML 88
A+ L D +++ E+++ + ++ DLE+ L
Sbjct: 575 AVEELKDFRNVVMVERIKGLLGKIKHDLEKGL 606
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 132 (51.5 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA + L +D +FTRMGA DN+ +ST++ EL+E+ I++ A+ SL ++DEL
Sbjct: 900 GSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDEL 958
Score = 106 (42.4 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 1 ILDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+L+ L +L + N +D +++G+L LD T FG+RMLR + +PL + ++ R +
Sbjct: 515 LLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRVN 574
Query: 60 AISVLLDQKHIT--EQMRAKMKDLR-DLERML 88
A+ L D +++ E+++ + ++ DLE+ L
Sbjct: 575 AVEELKDFRNVVMVERIKGLLGKIKHDLEKGL 606
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 143 (55.4 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA T+ VDRIFTRMG DNL ST++ E+ E+ IM++ + SL ++DEL
Sbjct: 576 GCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDEL 634
Score = 86 (35.3 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 2 LDSTALANLHVLTNSDNTTEGT------LIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIK 55
+D+T++ NL ++ N GT L + T+ G R+LRA L++PL +++ I
Sbjct: 167 IDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETIN 226
Query: 56 QRQDAISVLLDQKHI 70
R D + L+ + +
Sbjct: 227 TRLDCLDELMSNEQL 241
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 125 (49.1 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA L +D +FTRMGA D++ +ST+L EL+E+ I+R S SL ++DEL
Sbjct: 840 GSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDEL 898
Score = 107 (42.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 2 LDSTALANLHVL-TNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
L + L L V+ NSD + G+L ++H +T +G R+LR + PL + + I R DA
Sbjct: 422 LSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDA 481
Query: 61 ISVLLD--QKHITEQMRAKMKDLRDLERMLPSSTF 93
+S + H + Q+ +++ + ER + S F
Sbjct: 482 VSEISACMGSHSSSQLSSELVE-EGSERAIVSPEF 515
Score = 34 (17.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 26 EQLDHCVTSFGKRM 39
E+LD + SF K++
Sbjct: 646 EKLDSSIASFRKKL 659
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 117 (46.2 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC +PA+ +L +RIF+RMG D L +S + +E++++ I+++A K SL ++DEL
Sbjct: 611 GCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDEL 669
Score = 111 (44.1 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 21/66 (31%), Positives = 44/66 (66%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDLR 82
TL+ L+H VT+ G R+LR+ +++P T++ I+ RQ+AI L+ + + +++R +
Sbjct: 238 TLMSVLNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAH 297
Query: 83 DLERML 88
+L+R++
Sbjct: 298 ELDRVI 303
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 117 (46.2 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC +PA+ +L +RIF+RMG D L +S + +E++++ I+++A K SL ++DEL
Sbjct: 611 GCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDEL 669
Score = 111 (44.1 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 21/66 (31%), Positives = 44/66 (66%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDLR 82
TL+ L+H VT+ G R+LR+ +++P T++ I+ RQ+AI L+ + + +++R +
Sbjct: 238 TLMSVLNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAH 297
Query: 83 DLERML 88
+L+R++
Sbjct: 298 ELDRVI 303
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 116 (45.9 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 24/88 (27%), Positives = 51/88 (57%)
Query: 2 LDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+D+ + NL ++ +S D + TL + +++ TS G R+L + +V+P + + IK RQ+A
Sbjct: 398 IDAETIKNLELIHSSKDGSRNCTLYQSINNTSTSQGSRLLISAIVQPSNDFETIKHRQNA 457
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I LL + + + + ++D+++ L
Sbjct: 458 IKQLLSNQRVVFTLTPLLSKIQDIDKTL 485
Score = 113 (44.8 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ G +PA+ T+ VD+I +R+G DN+ ST++ E+ E I+ + ++ SL
Sbjct: 813 TIVAHIGYFLPAEFATVPIVDQIISRLGTSDNIQSNASTFMTEMKEISYILENTTESSLV 872
Query: 152 LVDEL 156
++DEL
Sbjct: 873 IIDEL 877
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 95 SFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRH 144
SF C VP D+L + G N+SG +STY+ ++ TI+ H
Sbjct: 773 SFSTCFVPNDTL-INETASFQLIHGC--NMSG-KSTYIQQVALL-TIVAH 817
Score = 37 (18.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 107 TLTPVDRIFTRMGAKDNLSGAQSTYL 132
T P R++ +KD+ SG + YL
Sbjct: 918 TFYPNIRVYHFQVSKDDSSGLKYNYL 943
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 119 (46.9 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP S LT D I R+GA D+ ST++AE+ E+ I++ A+ SL ++DEL
Sbjct: 682 GCFVPCSSAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDEL 740
Score = 108 (43.1 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 2 LDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
LD+ AL L+++ + D +L L+HC T G R+L L +PL N + I++RQ
Sbjct: 292 LDAAALKALNLMPGARDGAKNMSLYGLLNHCKTPVGSRLLSQWLKQPLMNAEEIEKRQQL 351
Query: 61 ISVLLDQKHITEQMRAK-MKDLRDLERM 87
+ + + + M+ + ++ + DL R+
Sbjct: 352 VEAFANDTELRQSMQEEHLRSIPDLYRL 379
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 122 (48.0 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 28/91 (30%), Positives = 51/91 (56%)
Query: 2 LDSTALANLHVL-TNSDNTTEGTLIEQLDH-CVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LDS A+ L+V+ + +D +L ++ C GKR+L L +PL +L+ IK R D
Sbjct: 296 LDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLD 355
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPS 90
+ +++ + + +R +K + D+ER+L S
Sbjct: 356 IVQCFVEEAGLRQDLRQHLKRISDVERLLRS 386
Score = 103 (41.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKD-NLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VP D +++ D IF R+GA D L G ST++ E+ E+ +I++ AS SL ++DEL
Sbjct: 689 GSFVPCDKASISIRDCIFARVGAGDCQLRGV-STFMQEMLETASILKGASDKSLIIIDEL 747
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 141 (54.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L+ G VPA+S + VD+IFTR+GA DN+S +ST++ E+ E+ I+ + S SL
Sbjct: 625 TLLAQIGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLV 684
Query: 152 LVDEL 156
L DEL
Sbjct: 685 LFDEL 689
Score = 82 (33.9 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD + +L ++ S N +L+ +D ++ G R+L+ +V PL + I R + +
Sbjct: 258 LDKFTVRSLELI-GSMNDGGSSLLNVIDRTISPMGARLLKRWMVFPLKDEKPINDRLNVV 316
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
Q E + ++ + DLER++
Sbjct: 317 EYFFRQPDFKELIEEQLHLIGDLERII 343
Score = 34 (17.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 16 SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTN 50
+DN + + EQL+ C++ +R ++ K + N
Sbjct: 376 ADNASLNRIGEQLNLCIS------IRDRIAKEINN 404
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 124 (48.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA T+ VD I +R+GA D+ ST++AE+ E+ I++ A+K SL ++DEL
Sbjct: 730 GCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDEL 788
Score = 84 (34.6 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 18/74 (24%), Positives = 39/74 (52%)
Query: 15 NSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQM 74
+S + + +L L+ C T G R+L + +PL N + I+ R + + + + + +
Sbjct: 351 SSSSNKDQSLYNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSL 410
Query: 75 RAK-MKDLRDLERM 87
R+ +K + DL+R+
Sbjct: 411 RSNDLKKIGDLDRL 424
Score = 36 (17.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 2 LDSTALANLHVLTNSDNT 19
LDS++ LH++ D++
Sbjct: 320 LDSSSFKGLHIIDLKDSS 337
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 119 (46.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD +L +L + T+ +G+L LDH TSFG RMLR ++KPL ++ I++R DA
Sbjct: 419 LLDPNSLQSLDIFTHDGG--KGSLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDA 476
Query: 61 ISVL---LDQKHITEQMRAKMKDLRDLERML 88
I + ++ E + + DL R L
Sbjct: 477 IECITSEINNSIFFESLNQMLNHTPDLLRTL 507
Score = 104 (41.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R + T ++ G VPA+ + L+ + + TR+GA D++ ST+ E+ + I+++
Sbjct: 802 RQVALLTIMAQIGSFVPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNC 861
Query: 146 SKYSLALVDEL 156
+K SL L+DE+
Sbjct: 862 NKRSLLLLDEV 872
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 143 (55.4 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L+ GC VPAD L VD IF+R+G+ DNL QST++ E+ E+ I+R A+ S
Sbjct: 1000 TILAQMGCYVPADYAELGIVDAIFSRVGSADNLYADQSTFMVEMMETAAILRQATPRSFV 1059
Query: 152 LVDEL 156
++DE+
Sbjct: 1060 IMDEI 1064
Score = 81 (33.6 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 2 LDSTALANLHVL-TNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+D ++ +L + T + G+L+ + VT G R+L L P T+L I R D
Sbjct: 487 IDKNSMRSLEIKKTMREGFFAGSLLHAIRRTVTKSGARLLNEWLSAPSTSLSVINSRLDL 546
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERML 88
I+ + +++ + + D +R++
Sbjct: 547 ITRFISNPDLSDAITVLLHRSHDTQRLV 574
Score = 42 (19.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 44 LVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAK 77
++KP N K + S+ ++ +TE+ RAK
Sbjct: 731 IMKPKANRALAKLHAELRSLQEQKEKLTEEFRAK 764
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 117 (46.2 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 26/89 (29%), Positives = 51/89 (57%)
Query: 1 ILDSTALANLHVLTNSDNTTEG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL ++TN+ ++ G TL L++ T G R LR+ +++PL + + IK R D
Sbjct: 224 MIDSSSAQNLELVTNNRDSRNGHTLFGVLNYTRTPGGSRRLRSNILEPLVDAETIKTRLD 283
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ L + + ++A + D E++L
Sbjct: 284 CVQEFLQDEELFFGLQAVISKFLDTEQLL 312
Score = 101 (40.6 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + ++IFTR+G D++ ST++ E+ E I+++A+ SL ++DEL
Sbjct: 616 GSYVPAEYCSFRIAEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIIIDEL 674
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 134 (52.2 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP D+ +T VD I R+GA D+ ST++AE+ E+ +I+R+A+K SL ++DEL
Sbjct: 706 GCFVPCDAAEITIVDAILCRVGAGDSQLKGVSTFMAEMLETASILRNATKNSLIIIDEL 764
Score = 80 (33.2 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMR 75
+L++ L+ C T+ G R+L L +PL++ +I++R + + L+DQ + +R
Sbjct: 331 SLLQLLNKCKTNAGVRLLNEWLKQPLSDKGSIEKRHNLVDYLVDQLELRSILR 383
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 125 (49.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP D L+ VD + R+GA D+ ST++AE+ E+ I+R AS+ SL ++DEL
Sbjct: 692 GCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSASEDSLIIIDEL 750
Score = 82 (33.9 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 22/89 (24%), Positives = 45/89 (50%)
Query: 2 LDSTALANLHVLTNSDNTTEGT--LIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LD+ A+ L++ S + GT L L+ C T G+R++ + +PL + + I++R D
Sbjct: 302 LDNAAVQALNLFQGSCDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERLD 361
Query: 60 AISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ ++ + + + + + DL RM
Sbjct: 362 LVETFVEDSELRKSCQEDLLRRFPDLNRM 390
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 114 (45.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D + TL L++ T+ G R LR+ +++PL +++ I R D
Sbjct: 333 MIDSSSAQNLELLVNNQDYRSNHTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLD 392
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 393 CVQELLQDEELFYGLQSVISRFLDTEQLL 421
Score = 92 (37.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA + +IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 725 GSFVPAQYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDEL 783
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 124 (48.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 692 GCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750
Score = 81 (33.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/89 (22%), Positives = 46/89 (51%)
Query: 2 LDSTALANLHVLTNS--DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LD A+ L++ S D T +L L+ C T+ G+R++ + +PL + + I++R +
Sbjct: 302 LDMAAVRALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVNQWIKQPLMDRNRIEERLN 361
Query: 60 AISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ ++ + + ++ + + DL R+
Sbjct: 362 LVEAFVEDSELRQSLQEDLLRRFPDLNRL 390
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 130 (50.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ T+ VD+IFTR+GA D+L ST++ E+ E I+ +A+ SLA+VDE+
Sbjct: 756 GSFVPAEKATIGLVDKIFTRIGATDDLFNDLSTFMVEMVEVSNILTNATPSSLAIVDEI 814
Score = 74 (31.1 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 22 GTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDL 81
G+L+ + TS G R+L + P + I++RQ + + L +H+ R ++ L
Sbjct: 347 GSLVSVIKRTCTSSGTRLLTEWIKSPSLDTKDIEKRQSFVKMFLKNQHLKIVTRQHLQQL 406
Query: 82 RDLERML 88
D R L
Sbjct: 407 GDFIRNL 413
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 113 (44.8 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D + TL L++ T+ G R LR+ +++PL +++ I R D
Sbjct: 333 MIDSSSAQNLELLVNNQDYRSNHTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLD 392
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 393 CVQELLQDEELFFGLQSVISRFLDTEQLL 421
Score = 95 (38.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + +IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 725 GSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDEL 783
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 124 (48.7 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 692 GCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750
Score = 77 (32.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 2 LDSTALANLHVLTNS--DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LD A+ L++ S D T +L L+ C T G+R++ + +PL + + I++R +
Sbjct: 302 LDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN 361
Query: 60 AISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ ++ + + ++ + + DL R+
Sbjct: 362 LVEAFVEDAELRQSLQEDLLRRFPDLNRL 390
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 113 (44.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA + VD IF+R+G+ D+LS +ST++ E+ E+ +I++ A+ S ++DE+
Sbjct: 723 GSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMVEMVETASILKKATNRSFVIMDEV 781
Score = 93 (37.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 19/87 (21%), Positives = 43/87 (49%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D + + +L + +G+L+E +D +T G R+L +++ P L I R + +
Sbjct: 320 IDYSTMQSLEITKTYQGDKKGSLLESIDKTITPQGGRLLFSRIQSPSLELKEINSRLNQL 379
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
+ +T ++R+ + D+ER +
Sbjct: 380 EFFYNNMELTNEVRSFLNAGSDIERCI 406
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 124 (48.7 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 692 GCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750
Score = 76 (31.8 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 2 LDSTALANLHVLTNS--DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LD A+ L++ S D T +L L+ C T G+R++ + +PL + + I++R +
Sbjct: 302 LDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN 361
Query: 60 AISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ ++ + + ++ + + DL R+
Sbjct: 362 LVEAFVEDAELRQTLQEDLLRRFPDLNRL 390
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 124 (48.7 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 692 GCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750
Score = 76 (31.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 2 LDSTALANLHVLTNS--DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LD A+ L++ S D T +L L+ C T+ G+R++ + +PL + + I++R +
Sbjct: 302 LDMAAVRALNLFQGSVEDTTGSQSLAAFLNKCKTAQGQRLVSQWIKQPLMDKNRIEERLN 361
Query: 60 AISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ ++ + ++ + + DL R+
Sbjct: 362 LVEAFVEDSELRRALQEDLLRRFPDLNRL 390
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 176 (67.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 40/110 (36%), Positives = 64/110 (58%)
Query: 1 ILDSTALANLHVLTNSDNTT-EGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ AL NL + NS N GTL QL+ C+T+ GKR+L+ L +PL N + IK+RQD
Sbjct: 697 VLDAAALENLEIFENSRNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQD 756
Query: 60 AISVLLDQK-HITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTL 108
A+++L + + + R + L D+ER++ + F S + D + L
Sbjct: 757 AVAILRGENLPYSLEFRKSLSRLPDMERLI-ARMFSSIEASGRNGDKVVL 805
Score = 146 (56.5 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 84 LERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMR 143
L R + + L+ G VPA++ ++PVD+I RMGAKD++ QST+L EL+E+ ++
Sbjct: 1092 LLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLT 1151
Query: 144 HASKYSLALVDEL 156
A++ SL ++DEL
Sbjct: 1152 SATRNSLVVLDEL 1164
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 124 (48.7 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 692 GCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750
Score = 76 (31.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 2 LDSTALANLHVLTNS--DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LD A+ L++ S D T +L L+ C T G+R++ + +PL + + I++R +
Sbjct: 302 LDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN 361
Query: 60 AISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ ++ + + ++ + + DL R+
Sbjct: 362 LVEAFVEDAELRQTLQEDLLRRFPDLNRL 390
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 112 (44.5 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 25/89 (28%), Positives = 50/89 (56%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D+ TL L++ T G R LR+ +++PL +++ I R D
Sbjct: 271 MIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLD 330
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 331 CVQELLQDEELFFGLQSVIARFLDTEQLL 359
Score = 98 (39.6 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + ++IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 669 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDEL 727
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 112 (44.5 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 25/89 (28%), Positives = 50/89 (56%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D+ TL L++ T G R LR+ +++PL +++ I R D
Sbjct: 309 MIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLD 368
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 369 CVQELLQDEELFFGLQSVIARFLDTEQLL 397
Score = 98 (39.6 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + ++IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 701 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDEL 759
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 109 (43.4 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T LS G +PA + VD +FTR+G+ D L+ ST++ E+ E I+ +A++ SL
Sbjct: 624 TLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLV 683
Query: 152 LVDEL 156
++DE+
Sbjct: 684 ILDEV 688
Score = 105 (42.0 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 21/87 (24%), Positives = 49/87 (56%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LD A+ L +L + + + +L + +D +T G+R L+ +L+ P + + I++ Q+ +
Sbjct: 260 LDIKAIKGLEILESLEGRKDISLFKVIDRTLTGMGRRRLKFRLLSPFRSREKIERIQEGV 319
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
L + + ++R ++ + DLER++
Sbjct: 320 QELKENREALLKIRQILEGMADLERLV 346
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 127 (49.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S +T VD I R+GA D+ ST++AE+ E+ +I+R AS+ SL ++DEL
Sbjct: 620 GCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDEL 678
Score = 69 (29.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 19/90 (21%), Positives = 45/90 (50%)
Query: 1 ILDSTALANLHVLTNSDNTTEGT--LIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQ 58
+LD+ A+ L++ +S T L L+ C T G+R++ + +PL + + I++R
Sbjct: 229 VLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERL 288
Query: 59 DAISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ + + + + ++ + + DL R+
Sbjct: 289 NLVEAFVVDTELRQGLQEDLLRRFPDLNRL 318
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 117 (46.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/59 (37%), Positives = 41/59 (69%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA + + VD+IF+R+G+ DNL +ST++ E+ E+ I+++A++ S ++DE+
Sbjct: 770 GSFVPASNARIGIVDQIFSRIGSADNLYQQKSTFMVEMMETSFILKNATRRSFVIMDEI 828
Score = 80 (33.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
I+ +A+ L + ++ N G+L+ ++ VT G R+L +L P TN+ I R D
Sbjct: 344 IIGESAMKGLEIRSSLYQNRYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVEINNRLD 403
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ + ++ +K D R+L
Sbjct: 404 LVEKFKLLPELCSKVINLLKKSNDTHRIL 432
Score = 39 (18.8 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 49 TNLDAIKQRQDAISVLLDQKH 69
T+L + Q QD + ++D H
Sbjct: 685 TSLATLAQEQDFVRPVVDDSH 705
Score = 35 (17.4 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQ 27
+D + N+++ + + T GTLI++
Sbjct: 150 VDDLSSKNMYIRSVTRVITPGTLIDE 175
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 127 (49.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S +T VD I R+GA D+ ST++AE+ E+ +I+R AS+ SL ++DEL
Sbjct: 625 GCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDEL 683
Score = 69 (29.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 19/90 (21%), Positives = 45/90 (50%)
Query: 1 ILDSTALANLHVLTNSDNTTEGT--LIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQ 58
+LD+ A+ L++ +S T L L+ C T G+R++ + +PL + + I++R
Sbjct: 234 VLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERL 293
Query: 59 DAISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ + + + + ++ + + DL R+
Sbjct: 294 NLVEAFVVDTELRQGLQEDLLRRFPDLNRL 323
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 111 (44.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 25/89 (28%), Positives = 50/89 (56%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D+ TL L++ T G R LR+ +++PL +++ I R D
Sbjct: 230 MIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETINMRLD 289
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 290 CVQELLQDEELFFGLQSVIARFLDTEQLL 318
Score = 98 (39.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + ++IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 622 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEVAYILHNANDKSLILIDEL 680
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 169 (64.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/71 (43%), Positives = 50/71 (70%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R + T ++ GC VPA+ T+ P+DRIFTR+GA D+L+ +ST++ E+TE+ I+ +A
Sbjct: 629 RQVALITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNA 688
Query: 146 SKYSLALVDEL 156
+ SL L+DE+
Sbjct: 689 TAQSLVLMDEI 699
Score = 123 (48.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+ NL + N + TL LD+ T+ G RML+ + +PL + I RQ A
Sbjct: 270 VLDAATRRNLELTQNLSGGRDNTLAAVLDNTATAMGSRMLQRWIHQPLRDHALILARQTA 329
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPAD------SLTLTPVDRI 114
++ LL+ + E + ++K L D+ER++ L+ + R P D +L+L P ++
Sbjct: 330 VNELLETA-VHESLHEQLKALGDIERIMAR---LALRTAR-PRDFARLRQALSLLPQLQL 384
Query: 115 -FTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
+++ A + Q L E + + ++ HA
Sbjct: 385 SLSQLSAPHTVKLGQ--LLGEFPQEQQLLEHA 414
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 117 (46.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP + ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 692 GCFVPCEWAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750
Score = 77 (32.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 2 LDSTALANLHVLTNSDNTTEGT--LIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
LD A+ L++ S T G+ L L+ C T G+R++ + +PL + + I++R +
Sbjct: 302 LDIAAVRALNLFQGSVEDTSGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN 361
Query: 60 AISVLLDQKHITEQMRAKM-KDLRDLERM 87
+ ++ + + ++ + + DL R+
Sbjct: 362 LVEAFVEDAELRQNLQEDLLRRFPDLNRL 390
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 109 (43.4 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D TL L++ T G R LR+ +++PL +++ I R D
Sbjct: 173 MIDSSSAQNLELLINNQDCRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLD 232
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 233 CVQELLQDEELFFGLQSVISRFLDTEQLL 261
Score = 99 (39.9 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + ++IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 565 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDEL 623
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 167 (63.8 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 66 DQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLS 125
D+ H A L R + LS GC +PA+S LTPVDRI TR+GA DN+
Sbjct: 958 DEPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNIL 1017
Query: 126 GAQSTYLAELTESETIMRHASKYSLALVDEL 156
+ST+ EL+E++ I+ +A+ SL ++DEL
Sbjct: 1018 QGKSTFFVELSETKKILSNATPRSLVILDEL 1048
Score = 163 (62.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 1 ILDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
ILD L NL +L N SD TT+GTL + ++ TSFGKR L+ ++ PL +D I QR D
Sbjct: 613 ILDGVTLNNLEILNNTSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYD 672
Query: 60 AISVLL-DQKHITEQMRAKMKDLRDLERML 88
++ L+ D + ++ + ++ DLER+L
Sbjct: 673 SVDYLMNDGLELRSILQDTLANIPDLERLL 702
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 109 (43.4 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D TL L++ T G R LR+ +++PL +++ I R D
Sbjct: 305 MIDSSSAQNLELLINNQDCRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLD 364
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 365 CVQELLQDEELFFGLQSVISRFLDTEQLL 393
Score = 99 (39.9 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + ++IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 697 GSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDEL 755
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 110 (43.8 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++DS++ NL +L N+ D TL L++ T G R LR+ +++PL +++ I R D
Sbjct: 311 MIDSSSAQNLELLINNQDYRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLD 370
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
+ LL + + +++ + D E++L
Sbjct: 371 CVQELLQDEELFFGLQSVISRFLDTEQLL 399
Score = 95 (38.5 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ + +IFTR+ D++ ST++ E+ E I+ +A+ SL L+DEL
Sbjct: 703 GSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDEL 761
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 118 (46.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R + ++ ++ G VP T++ VD I R+GA DN+ ST++ E+ E+ I+R A
Sbjct: 678 RSVGTAVLMAHIGAFVPCSLATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIRTA 737
Query: 146 SKYSLALVDEL 156
+ SL ++DEL
Sbjct: 738 TDKSLVIIDEL 748
Score = 69 (29.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 2 LDSTALANLHVLTNSDNTTE------GTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIK 55
LDS A+A L+++ +++ LDHC T G R++ + +PL + + +
Sbjct: 299 LDSAAVAALNIMPKPGTHPSMPSYRWQSVLGVLDHCRTPQGHRLMGQWVKQPLRSRNILN 358
Query: 56 QRQDAISVLLDQKHITEQMRAK-MKDLRDL 84
R + + LL+ E + +K + D+
Sbjct: 359 DRHNIVQCLLESPDTMETLSLDYLKRIPDI 388
Score = 48 (22.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 25/91 (27%), Positives = 38/91 (41%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNL-DAIKQRQDA 60
LD + V + N + L+E LD F + L+ P L +I+ A
Sbjct: 154 LDGGGQRRVGVASVEQNDCKFQLLEFLDD--DFFTELEATVVLLGPKECLLPSIEGEYSA 211
Query: 61 ISVLLDQKHITEQMRAKMKD---LRDLERML 88
+ LLD+ + M K D L+DL R+L
Sbjct: 212 VKTLLDRNGVMITMPKKSGDNDLLQDLNRLL 242
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 91 STFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSL 150
+ L+ G VPA+SLTL+PVD +F RMGA+D++ QST+ EL E+ ++ A+ SL
Sbjct: 18 AAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFIELAETAAMLARATPDSL 77
Query: 151 ALVDEL 156
++DEL
Sbjct: 78 VVLDEL 83
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 163 (62.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
+LD+TAL +L +L T+ +L + ++ T+FG R +R + PL N D I QR D
Sbjct: 594 VLDATALKHLEILETQSGETKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDKINQRLDV 653
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCR--VPADSLTLTPVDRIFTRM 118
+ L HI +R K+K L D+ER+L + Q R V D++ T + T +
Sbjct: 654 VEFLRKNDHILSLIRLKLKKLPDIERLLNKICIQASQSERGAVFFDNIVNTKLKEFVTFL 713
Query: 119 GA 120
A
Sbjct: 714 NA 715
Score = 149 (57.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 84 LERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMR 143
L R S L+ G VP+ LT VD+IFTR+G+ DNL +ST+L EL + +++
Sbjct: 1023 LLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLK 1082
Query: 144 HASKYSLALVDEL 156
++KYSLA++DEL
Sbjct: 1083 QSTKYSLAILDEL 1095
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 1 ILDSTALANLHVLTNSDN-TTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD+ L NL + N+ N + EGTL+E++D C T FGKR+L+ L PL N AI R D
Sbjct: 584 VLDAVTLNNLEIFLNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRLD 643
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERML 88
AI L+ ++ +K L DLER+L
Sbjct: 644 AIEDLMVVPDKISEVVDLLKKLPDLERLL 672
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 162 (62.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 42/138 (30%), Positives = 72/138 (52%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVK-PLTNLDAIKQRQ---DAISVLLDQKHITEQMRAKM 78
T+++++D + L+ + ++ P NL A + + I + +Q + A
Sbjct: 926 TIVDEVDSKTNTQLNGFLKFKSLRHPCFNLGATTAKDFIPNDIELGKEQPRLGLLTGANA 985
Query: 79 KDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTES 138
+ RM + ++ GC VP +S LTP+DRI TR+GA DN+ +ST+ EL E+
Sbjct: 986 AGKSTILRMACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAET 1045
Query: 139 ETIMRHASKYSLALVDEL 156
+ I+ A+ SL +VDEL
Sbjct: 1046 KKILDMATNRSLLVVDEL 1063
Score = 156 (60.0 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD L NL + +NS D + +GTL + + +T GKRM++ L+ PL + I+ R D
Sbjct: 615 VLDGITLQNLEIFSNSFDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLD 674
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMG 119
++ LL + EQ+ L DLERML + + +V +T + I
Sbjct: 675 SVDSLLQDITLREQLEITFSKLPDLERMLAR---IHSRTIKVKDFEKVITAFETIIELQD 731
Query: 120 A-KDN-LSGAQSTYLAELTE 137
+ K+N L G S Y++ E
Sbjct: 732 SLKNNDLKGDVSKYISSFPE 751
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 111 (44.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
RM+ ++ G +P ++ D+I R+GA DN+ ST+++E+ ++ I++ +
Sbjct: 378 RMIGLCVIMAQIGMFIPCSEAHISICDKIMCRIGAGDNIVEGMSTFMSEMKDTSEIIKKS 437
Query: 146 SKYSLALVDEL 156
+K SL L+DEL
Sbjct: 438 TKNSLVLIDEL 448
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
I++ A+ LH+ + E TL + L+ T G++M++ + +PL + D I +R +
Sbjct: 11 IIEEDAIEGLHLFGDKK---EMTLFKHLNRTHTKIGEKMIKEWIKQPLIDKDKINKRLEL 67
Query: 61 ISVLLDQKHITEQMR-AKMKDLRDLERML 88
+ D I +++ ++ + DLE+++
Sbjct: 68 VEGFYDNSGIRLKIKNEELAIIPDLEKLI 96
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 160 (61.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 84 LERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMR 143
L RM + ++ GC +P S LTPVDRI +R+GA DN+ AQST+ EL+E++ I+
Sbjct: 951 LLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILS 1010
Query: 144 HASKYSLALVDEL 156
A+ SL ++DEL
Sbjct: 1011 EATPRSLVILDEL 1023
Score = 155 (59.6 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 39/128 (30%), Positives = 63/128 (49%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD L N+ + NS D +GTL + L+ C+T FGKRM + + PL + I R D
Sbjct: 588 VLDGQTLINMEIFANSFDGGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLD 647
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRI-FTRM 118
A+ L + +Q +++ + DLER++ + CR L ++I +T
Sbjct: 648 AVDALNADSSVRDQFASQLTKMPDLERLISR---IHAANCRAQDFVRVLEGFEQIEYTMS 704
Query: 119 GAKDNLSG 126
KD+ SG
Sbjct: 705 LLKDSGSG 712
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 160 (61.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 84 LERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMR 143
L RM + ++ GC +P S LTPVDRI +R+GA DN+ AQST+ EL+E++ I+
Sbjct: 951 LLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILS 1010
Query: 144 HASKYSLALVDEL 156
A+ SL ++DEL
Sbjct: 1011 EATPRSLVILDEL 1023
Score = 155 (59.6 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 39/128 (30%), Positives = 63/128 (49%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+LD L N+ + NS D +GTL + L+ C+T FGKRM + + PL + I R D
Sbjct: 588 VLDGQTLINMEIFANSFDGGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLD 647
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRI-FTRM 118
A+ L + +Q +++ + DLER++ + CR L ++I +T
Sbjct: 648 AVDALNADSSVRDQFASQLTKMPDLERLISR---IHAANCRAQDFVRVLEGFEQIEYTMS 704
Query: 119 GAKDNLSG 126
KD+ SG
Sbjct: 705 LLKDSGSG 712
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 152 (58.6 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R L L+ G VPADSL LT D I+TRMGA DNL +ST++ E+ E+ I+R A
Sbjct: 924 RALALLVLLAQVGSFVPADSLRLTLSDAIYTRMGASDNLFAGESTFMVEVGETAAILRTA 983
Query: 146 SKYSLALVDEL 156
+ SL L+DEL
Sbjct: 984 TPRSLVLLDEL 994
Score = 121 (47.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 42/141 (29%), Positives = 69/141 (48%)
Query: 2 LDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++ T L +L V NS D+T +G+L+ LD T FG+RMLR L +PL + + + R A
Sbjct: 544 INGTTLESLEVYRNSTDHTEKGSLLWALDKTRTRFGQRMLRKWLGRPLLDKERLDDRVAA 603
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQG-CRVPADSLTLTPVDRIFTR-M 118
+ L + ++ Q+ K L ++ L S F G C P L + RI +
Sbjct: 604 VEELFENRN-GPQVEKLQKLLSSIKTDLERSLIRIFYGRCTRPELLAVLQTLQRIAVEYI 662
Query: 119 GAKD-NLSGAQSTYLAELTES 138
K+ + +G +S ++E S
Sbjct: 663 VVKEPSQTGFKSNLVSEALAS 683
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 148 (57.2 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 46/148 (31%), Positives = 72/148 (48%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+++ L NL + +NS D +EGTL L CVT FGKR+ L PL + AI R D
Sbjct: 667 LMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAINARLD 726
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSL-TLTPVDRI---F 115
+ ++ D I + + + L DLER++ G PAD + L RI F
Sbjct: 727 VVELIADNPVIRDTIWGFLHKLPDLERLISRV----HAGRSKPADFVRVLEGFQRINSAF 782
Query: 116 TRMGAKDNLSGAQSTYLAELTESETIMR 143
++ ++ + A+ T L E+ +S M+
Sbjct: 783 DQL-REEFMEVAEGTLLGEIIQSAPNMK 809
Score = 138 (53.6 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 84 LERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMR 143
L R + + ++ GC VPA ++TP+ I+TR+GA D++ A+ST++ EL+E++ I+
Sbjct: 1033 LLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILD 1092
Query: 144 HASKYSLALVDEL 156
SL ++DEL
Sbjct: 1093 ECGPKSLVILDEL 1105
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 147 (56.8 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA S++LT D IFTRMGA+DNL +ST++ E++E+ I+R A+ SL ++DEL
Sbjct: 905 GSFVPATSMSLTLSDAIFTRMGARDNLFKGESTFMVEVSETAAILRQATPRSLVVLDEL 963
Score = 114 (45.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 38/136 (27%), Positives = 69/136 (50%)
Query: 1 ILDSTALANLHVLTNS-DNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+++ T L +L V N+ D++ +G+L+ LD T FG+R+LR + +PL + +++R
Sbjct: 501 LINGTTLESLEVYRNATDHSEKGSLLWALDKTHTRFGQRLLRKWIGRPLLDQQRLEERVS 560
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQG-CRVPADSLTLTPVDRI-FTR 117
A+ LL+ + T ++ + L+ ++ L S + G C P TL + +I F
Sbjct: 561 AVEELLNNQS-TAKVDKLVNMLKSIKADLERSLIRIYYGKCTRPELLSTLQTLQKISFEY 619
Query: 118 MGAKDNL-SGAQSTYL 132
K +G ST L
Sbjct: 620 ARVKSPADTGFSSTLL 635
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 141 (54.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R L T +S GC VPA L D+IFTR+GA D+L QST++ E+ E++ + +A
Sbjct: 618 RQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANA 677
Query: 146 SKYSLALVDEL 156
S+ SL L DE+
Sbjct: 678 SERSLILFDEI 688
Score = 118 (46.6 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 38/141 (26%), Positives = 67/141 (47%)
Query: 2 LDSTALANLHVLTNSDNTTE--GTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+D + NL LT + T E G+L+ LD T+ G RML+ + +PL + I++R +
Sbjct: 256 IDVHSKRNLE-LTETLRTKEKTGSLLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERLE 314
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMG 119
+ ++ + E ++ K+K++ DLER+ F + + +L V I +
Sbjct: 315 MVETFVNDYFLREDLKEKLKEVYDLERLAGKVAFGNVNARDLLQLRRSLLQVPAILEAIS 374
Query: 120 AKDNLSGAQSTYLAELTESET 140
DN A+ A+ ES T
Sbjct: 375 LLDNAYAARLIQGADPCESLT 395
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
R + ++ G +PA S + VD+IFTR+GA DNLS ST++ E+ E+ I+ +A
Sbjct: 629 RQIALLVIMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNA 688
Query: 146 SKYSLALVDEL 156
+ SL ++DE+
Sbjct: 689 TDRSLVILDEI 699
Score = 125 (49.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 40/144 (27%), Positives = 72/144 (50%)
Query: 1 ILDSTALANLHVLTNSDNT-TEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
++D + NL +L+ +G+L++ ++ T G R+LR L+ P +L I RQD
Sbjct: 265 LIDKASQTNLELLSPIHGEHRKGSLLQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQD 324
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPS-STFLSFQGCRVPADSLTLTPVDRIFTRM 118
++ L Q + + ++ ++ +RDLER+ ST L+ P D TL D + +
Sbjct: 325 SVEFFLQQADLRKILKRQLSCVRDLERLATKISTSLA-----TPKDIGTLR--DSLLSCT 377
Query: 119 GAKDNLSGAQSTYLAELTESETIM 142
DNL Q+ L E E++ ++
Sbjct: 378 HIADNL---QNCALPEFLENKFLI 398
Score = 39 (18.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 129 STYLAELTESETIMRHASKYSLALVDE 155
+T+ ELTE E +H + A+V E
Sbjct: 732 ATHYKELTELEMHCQHVENFH-AMVKE 757
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 131 (51.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA+ T+ VD IFTR GA DN+ +ST++ ELT++ I++ A++ SL ++DEL
Sbjct: 37 GSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDEL 95
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 139 (54.0 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 36/116 (31%), Positives = 62/116 (53%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D+ AL NL + EG+LI +D+ +T+ G R+L+ L PL AI +R D +
Sbjct: 269 IDAAALRNLELFCTQSGDLEGSLISSIDYTITACGGRLLKRCLSAPLACSHAINRRLDIV 328
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPAD--SLTLTPVDRIF 115
++ + + +R ++ + D+ER+L T + C P D +L LT +D+IF
Sbjct: 329 EFFVNDRTLCRGVRETLRGIADIERIL---TRIKVGKCS-PKDLYALKLT-LDKIF 379
Score = 122 (48.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 94 LSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALV 153
L+ G VPA + +D++F+R+GA DN++ ST++ E+TE+ I+ A+ S ++
Sbjct: 633 LAHIGSFVPAQHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVIL 692
Query: 154 DEL 156
DE+
Sbjct: 693 DEI 695
Score = 37 (18.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 50 NLDAIKQRQDAISVLLDQKH 69
+L A+K D I VLLD H
Sbjct: 367 DLYALKLTLDKIFVLLDLLH 386
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 136 (52.9 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 62 SVLLD--QKHITEQMRAKMKDLRDLERMLPSSTFLSFQ-GCRVPADSLTLTPVDRIFTRM 118
SV LD K I M R + + L FQ G VPA S L VD++FTR+
Sbjct: 590 SVYLDTQDKAIAVLTGPNMAGKSTFMRQIALNQIL-FQIGAFVPAKSAKLPIVDKLFTRI 648
Query: 119 GAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GA DNL+ +ST+ E+ E+ I+ H ++ SL L DE+
Sbjct: 649 GAGDNLTAGESTFFVEMKETANILNHYTEDSLILFDEV 686
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 110 (43.8 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+K SL
Sbjct: 500 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATKQSLV 559
Query: 152 LVDE 155
L+DE
Sbjct: 560 LIDE 563
Score = 62 (26.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISV-LLDQKHITEQM 74
EG +L L+ C +G+++LR +P +L+ + R D I LL Q QM
Sbjct: 141 EGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQM 196
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 1 ILDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
ILDS L NL ++ N D E +L L+ T G R L+ L+KPL +++ I R D
Sbjct: 282 ILDSITLRNLEIVKNVRDEGDENSLYRTLNCTRTPMGNRTLKKWLLKPLLSVEKINPRLD 341
Query: 60 AISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPA--DSLTLTPVDRIFTR 117
AI L + + +R + D+RD+ER++ + + + A SL + P R
Sbjct: 342 AIEELAEDSLLRYDIRDWLSDVRDIERLVGRIVYGNASARDLVALKKSLGVVPSLRDSLL 401
Query: 118 MGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDE 155
A+ + + LA +E E + A +A++DE
Sbjct: 402 EKARFEMLKEIAEGLASFSELEEL---AEMIEIAIMDE 436
Score = 126 (49.4 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA ++ +D++FTR+GA D+L+ QST++ E+ E I+ +AS SL L+DE+
Sbjct: 660 GSFVPASYASVGIIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEI 718
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 136 (52.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/59 (42%), Positives = 43/59 (72%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VPA S +L+ D I+TRMGA+D++ +ST+ EL E+ I++++++ +L ++DEL
Sbjct: 1202 GCFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEETSDILKNSTQNTLVILDEL 1260
Score = 121 (47.7 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 1 ILDSTALANLHVLTN-SDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQD 59
+L + + NL +L N SDN +G+LI ++ T G RM + KPL L+ IK+RQD
Sbjct: 786 VLPHSTIVNLELLVNESDNKEKGSLIWLMNRTSTFSGSRMFINWICKPLNQLELIKERQD 845
Query: 60 AISVLLD-----QKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSL-TLTPVDR 113
A+ L++ I + + DL+R L S + Q C P + L T+T + R
Sbjct: 846 AVEELVNGIKTNSPPIVSIISLFKSHIPDLQRNL-SRIYYKVQ-C-TPKEFLNTMTSLQR 902
Query: 114 I 114
I
Sbjct: 903 I 903
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 110 (43.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+K SL
Sbjct: 632 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATKQSLV 691
Query: 152 LVDE 155
L+DE
Sbjct: 692 LIDE 695
Score = 62 (26.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISV-LLDQKHITEQM 74
EG +L L+ C +G+++LR +P +L+ + R D I LL Q QM
Sbjct: 273 EGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQM 328
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 133 (51.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 63 VLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKD 122
V+LD+ + A M R S L+ G VP S T++ VD IFTR+GA D
Sbjct: 627 VVLDKCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASD 686
Query: 123 NLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
S ST++AE+ + I++ A+K S ++DEL
Sbjct: 687 KQSQGISTFMAEMLDCSAILQRATKNSFVVIDEL 720
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 133 (51.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 63 VLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKD 122
V+LD+ + A M R S L+ G VP S T++ VD IFTR+GA D
Sbjct: 627 VVLDKCRLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASD 686
Query: 123 NLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
S ST++AE+ + I++ A+K S ++DEL
Sbjct: 687 KQSQGISTFMAEMLDCSAILQRATKNSFVVIDEL 720
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 41/156 (26%), Positives = 73/156 (46%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
+D ANL + G+L++ +D VTS G R+L +L PLT+ AI +R DA+
Sbjct: 297 IDPATRANLELTRTLAGERRGSLLDAIDCTVTSAGSRLLAQRLAAPLTDAPAIARRLDAV 356
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGCRVPADSLT-LTPVDRIFTRMGA 120
+ E +R+ ++ D+ R L + + G R A + D++ R+G
Sbjct: 357 GAFVADSAAREDIRSILRGAPDMSRALARLS-VGRGGPRDLAGLRDGIIAADQVLARLGE 415
Query: 121 KDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
D + +A LT + A++++ AL ++L
Sbjct: 416 LDQPPQEIAAVMAALTRPSREL--AAEFATALDEQL 449
Score = 115 (45.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VPA + +DR+F+R+GA D+L+ +ST++ E+ E+ I+ A + +L ++DE+
Sbjct: 684 GSFVPATRARIGIIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERALVILDEI 742
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 121 (47.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T ++ GC VP + L +D I R+GA D+ ST++AE+ E+ TI+R A+ SL
Sbjct: 738 TVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLI 797
Query: 152 LVDEL 156
++DEL
Sbjct: 798 IIDEL 802
Score = 34 (17.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 43 QLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDLR 82
+LV+ +L+A+ Q I D++ + +R ++ +L+
Sbjct: 468 ELVETTIDLEALDSHQYIIRAEFDEELL--DLRQRLDELQ 505
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 121 (47.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRM--GAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDE 155
G VPA+ T+ VD IFTR GA DN+ +ST++ ELT++ I++ A++ SL ++DE
Sbjct: 36 GSYVPAEEATIGIVDGIFTRQRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDE 95
Query: 156 L 156
L
Sbjct: 96 L 96
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 92 (37.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
FL G VPA S T++ D I+TR+ ++++ + ++S+++ + + + R A+ SL +
Sbjct: 614 FLGQIGSYVPAKSATISLFDHIYTRISSRESNAISESSFMIDCKQIAQMTRFATSRSLLI 673
Query: 153 VDE 155
+DE
Sbjct: 674 IDE 676
Score = 89 (36.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 25/99 (25%), Positives = 53/99 (53%)
Query: 1 ILDSTALANLHVLTNSD--------NTTEG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNL 51
+LD+ L +L + +N + N+ EG +L D T+ GK++L+ ++P N
Sbjct: 226 LLDNNTLFSLQIFSNQNHPSCYSFGNSKEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNR 285
Query: 52 DAIKQRQDAISVLLDQKH--ITEQMRAKMKDLRDLERML 88
I++RQ+ I Q++ + ++ +K+++DL+ +L
Sbjct: 286 FVIEERQNLIQFFSSQENSSLKFELLDNLKNIKDLKIIL 324
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 124 (48.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 208 GCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 266
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 126 (49.4 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
FL+ G VPADS + DRIF MG+K +++ QST++ +L + T++RHA+ SL L
Sbjct: 590 FLAHIGSFVPADSAIVGLTDRIFCAMGSK-SMTSEQSTFMIDLHQVGTMLRHATSRSLCL 648
Query: 153 VDE 155
+DE
Sbjct: 649 LDE 651
Score = 113 (44.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMK 79
EG ++ L+ CVT GK +LR ++P+ ++D I R + IS L + + +R +K
Sbjct: 216 EGFSVFGMLNKCVTPMGKHLLRTWFLRPIIDIDVINNRLNTISFFLCCEDVMSALRGTLK 275
Query: 80 DLRDLERML-----PSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLS 125
+RD+ ML PSS S +L +++IF +G ++L+
Sbjct: 276 SVRDIPHMLKKFNSPSSFCTSSDWHAFLKCICSLLHINKIF-EVGISEHLA 325
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 124 (48.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
GC VP +S ++ VD I R+GA D+ ST++AE+ E+ +I+R A+K SL ++DEL
Sbjct: 342 GCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 400
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 107 (42.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + +D IFTR+ + +++S ST++ +L + + +A+++SL
Sbjct: 606 TFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLV 665
Query: 152 LVDE 155
L+DE
Sbjct: 666 LIDE 669
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHI--TEQMRAK 77
EG +L L+ C +G+++LR +P L + R D I L +++ + M
Sbjct: 247 EGLSLFGILNRCRCRWGQKLLRLWFTRPTRELRELNSRLDVIEFFLMPQNLDMAQMMHRL 306
Query: 78 MKDLRD----LERMLPSSTFLS 95
+ +++ L+RM S T +S
Sbjct: 307 LSHIKNVPLILKRMKLSHTKVS 328
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 107 (42.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + +D IFTR+ + +++S ST++ +L + + +A+++SL
Sbjct: 608 TFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLV 667
Query: 152 LVDE 155
L+DE
Sbjct: 668 LIDE 671
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-----DQKHITEQM 74
EG +L L+ C +G+++LR +P L + R D I L D + ++
Sbjct: 249 EGLSLFGILNRCRCKWGQKLLRLWFTRPTRELRELNSRLDVIQFFLMPQNLDMAQMLHRL 308
Query: 75 RAKMKDLR-DLERMLPSSTFLS 95
+ +K++ L+RM S T +S
Sbjct: 309 LSHIKNVPLILKRMKLSHTKVS 330
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A++ SL
Sbjct: 606 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATERSLV 665
Query: 152 LVDE 155
LVDE
Sbjct: 666 LVDE 669
Score = 61 (26.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-----DQKHITEQM 74
EG +L L+ C +G+++LR +P +L + R D I L D + ++
Sbjct: 247 EGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLGELNSRLDVIQFFLLPQNLDMAQMLHRL 306
Query: 75 RAKMKDLR-DLERMLPSSTFLS 95
+K++ L+RM S T +S
Sbjct: 307 LGHIKNVPLILKRMTLSHTKVS 328
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 95 (38.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
F++ G VPA + +D I+TR+ ++++S ST++ +L + + +A++ SL L
Sbjct: 567 FMALIGSYVPAAEAEIGAIDGIYTRIHTRESVSVGLSTFMIDLNQVAKAVNNATERSLVL 626
Query: 153 VDE 155
+DE
Sbjct: 627 IDE 629
Score = 78 (32.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 16 SDNTTEG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISV-LLDQKHITE- 72
S EG +L L+ C +G+++LR L +P NL + +R D I LL Q H T
Sbjct: 203 SSGLKEGFSLYGILNRCRCKWGEKLLRLWLTRPTRNLTELNKRLDVIHFFLLAQNHETVL 262
Query: 73 QMRAKMKDLRD----LERMLPSSTFLS 95
++ ++++++ L+RM S T +S
Sbjct: 263 TLQDCLRNIKNVPLILKRMTLSHTKVS 289
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 122 (48.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
T L+ G VPAD + VD+IF+R+GA D+L QST++ E+ E+ I++ A+ S
Sbjct: 742 TILAQVGSFVPADYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETAAILKQATARSFV 801
Query: 152 LVDEL 156
++DE+
Sbjct: 802 IMDEV 806
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 104 (41.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 609 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLV 668
Query: 152 LVDE 155
L+DE
Sbjct: 669 LIDE 672
Score = 59 (25.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-----DQKHITEQM 74
EG +L L+ C +G+++LR +P +L + R D I L D + ++
Sbjct: 250 EGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL 309
Query: 75 RAKMKDLR-DLERMLPSSTFLS 95
+K++ L+RM S T +S
Sbjct: 310 LGHIKNVPLILKRMKLSHTKVS 331
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 104 (41.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 626 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLV 685
Query: 152 LVDE 155
L+DE
Sbjct: 686 LIDE 689
Score = 59 (25.8 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-----DQKHITEQM 74
EG +L L+ C +G+++LR +P +L + R D I L D + ++
Sbjct: 267 EGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL 326
Query: 75 RAKMKDLR-DLERMLPSSTFLS 95
+K++ L+RM S T +S
Sbjct: 327 LGHIKNVPLILKRMKLSHTKVS 348
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 104 (41.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 609 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLV 668
Query: 152 LVDE 155
L+DE
Sbjct: 669 LIDE 672
Score = 59 (25.8 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-----DQKHITEQM 74
EG +L L+ C +G+++LR +P +L + R D I L D + ++
Sbjct: 250 EGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL 309
Query: 75 RAKMKDLR-DLERMLPSSTFLS 95
+K++ L+RM S T +S
Sbjct: 310 LGHIKNVPLILKRMKLSHTKVS 331
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 117 (46.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 39/160 (24%), Positives = 82/160 (51%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++D+ + +L L +S + T TL L+ C+T G R+LR +++P T+ ++I R ++
Sbjct: 193 LIDTCTVRDLE-LVDSLSETGTTLYSFLNCCLTKMGMRILRTSILQPSTHENSIILRSES 251
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQGC---RVPADSLTL--TPVDRIF 115
+ L++ + +R+ +K DLE++ STFL +G +++ L T + F
Sbjct: 252 VQELINDEDALISIRSSLKHTCDLEKVF--STFLEPRGLLSQEQEINNIILLKTVLQNTF 309
Query: 116 TRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLALVDE 155
+ N+S + ++ E E + ++ LA+++E
Sbjct: 310 VIRKSIQNVSSHLLVQVKQILEHENV-----QHLLAIINE 344
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 117 (46.2 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
RM+ ++ GC VP LT D I R+GA D+ ST++AE+ E+ I++ A
Sbjct: 676 RMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSA 735
Query: 146 SKYSLALVDEL 156
+ SL ++DEL
Sbjct: 736 TSESLIIIDEL 746
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 98 GCRVPADSLTLTPVDRIFTRMGAKD-NLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
G VP D +++ D IF R+GA D L G ST++ E+ E+ +I++ AS SL ++DEL
Sbjct: 26 GSFVPCDRASISVRDCIFARVGAGDCQLRGV-STFMQEMLETASILKGASDKSLIIIDEL 84
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
FLS G VPAD+ T+ DRIF MG+K ++ QST++ +L + ++R A+ SL L
Sbjct: 587 FLSHIGSFVPADAATVGLTDRIFCAMGSKF-MTAEQSTFMIDLHQVGMMLRQATSRSLCL 645
Query: 153 VDE 155
+DE
Sbjct: 646 LDE 648
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 112 (44.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/87 (28%), Positives = 50/87 (57%)
Query: 1 ILDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDA 60
++DS + L ++ N + +L + LD T G+R LR +++PLT+ +I+ R +A
Sbjct: 266 LIDSKTVRGLELVENKLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGSIEMRLEA 325
Query: 61 ISVLLDQKHITEQMRAKMKDLRDLERM 87
+ L + +++R +MK L DL+++
Sbjct: 326 LEELKANDDLLQKLRLEMKSLPDLDKL 352
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 114 IFTRMGAK---DNLSGAQSTYLAELTESETIMRHASKYSLALVDEL 156
+F R+ A+ D++ S + E+ E + + +L ++DEL
Sbjct: 669 VFKRLHARVCNDSMELTSSNFGFEMKEMAYFLDDINTETLLILDEL 714
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
RM+ ++ GC VP LT D I R+GA D+ ST++AE+ E+ I++ A
Sbjct: 676 RMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSA 735
Query: 146 SKYSLALVDEL 156
+ SL ++DEL
Sbjct: 736 TSESLIIIDEL 746
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 88 (36.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 86 RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKD-NLSGAQSTYLAELTESETIMRH 144
R + + ++ GC VP+ + +I R+G+ D L G ST+ +E+ E I+++
Sbjct: 606 RQIAIISLMAHIGCFVPSTYAKIPIFSQIMCRIGSSDIQLKGI-STFFSEMIEVSAIIKN 664
Query: 145 ASKYSLALVDEL 156
A +L ++DEL
Sbjct: 665 ADSDTLVIIDEL 676
Score = 74 (31.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 16/67 (23%), Positives = 37/67 (55%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAK-MKDL 81
TL + L+ C T G+R L ++ P+ + I QR D + ++ D + + ++ + ++ +
Sbjct: 199 TLYKFLNKCKTKIGERKLLKWIMHPIRDEKKINQRLDMVEIMNDDQALRSMIQGEYLRKV 258
Query: 82 RDLERML 88
DL+ ++
Sbjct: 259 CDLDLII 265
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 97 (39.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESET-IMRHASKYSL 150
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 609 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSL 668
Query: 151 ALVDE 155
L+DE
Sbjct: 669 VLIDE 673
Score = 59 (25.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-----DQKHITEQM 74
EG +L L+ C +G+++LR +P +L + R D I L D + ++
Sbjct: 250 EGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL 309
Query: 75 RAKMKDLR-DLERMLPSSTFLS 95
+K++ L+RM S T +S
Sbjct: 310 LGHIKNVPLILKRMKLSHTKVS 331
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 97 (39.2 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESET-IMRHASKYSL 150
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 626 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSL 685
Query: 151 ALVDE 155
L+DE
Sbjct: 686 VLIDE 690
Score = 59 (25.8 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 21 EG-TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLL-----DQKHITEQM 74
EG +L L+ C +G+++LR +P +L + R D I L D + ++
Sbjct: 267 EGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL 326
Query: 75 RAKMKDLR-DLERMLPSSTFLS 95
+K++ L+RM S T +S
Sbjct: 327 LGHIKNVPLILKRMKLSHTKVS 348
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 85 (35.0 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+L+ GC VPA+ + D+I TR+ ++ + QS++L + + + A++ SL L
Sbjct: 661 YLAQIGCFVPAERARIGIADKILTRIRTQETVYKTQSSFLLDSQQMAKSLSLATEKSLIL 720
Query: 153 VDE 155
+DE
Sbjct: 721 IDE 723
Score = 75 (31.5 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 1 ILDSTALANLHVLTNS-----DNTTEG---TLIEQLDHCVTSFGKRMLRAQLVKPLTNLD 52
+LD ++ LH+ + D ++ E + + + +R+L++ L+ PLTN
Sbjct: 248 VLDENTISALHIFPTAHKLGHDKMMRNGFFSVFELFNQVSSDYARRILKSWLINPLTNKK 307
Query: 53 AIKQRQDAISVLLDQKH 69
I+ R I LLD+++
Sbjct: 308 RIETRYSIIRTLLDKQN 324
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 92 (37.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
FLS G VPA + VDRI TRM D++ ST+ ++ + +R A+ SL +
Sbjct: 657 FLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVI 716
Query: 153 VDE 155
+DE
Sbjct: 717 IDE 719
Score = 67 (28.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDLR 82
+L + +D C ++ GK+ LR P T+ D + RQ + ++ ++ AK+ +
Sbjct: 306 SLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYF--KQDWNAEVTAKLSSIL 363
Query: 83 DLERMLPSSTFLSFQ 97
+ L +S F FQ
Sbjct: 364 GRVKAL-NSVFQKFQ 377
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 92 (37.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
FLS G VPA + VDRI TRM D++ ST+ ++ + +R A+ SL +
Sbjct: 657 FLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVI 716
Query: 153 VDE 155
+DE
Sbjct: 717 IDE 719
Score = 67 (28.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 23 TLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKDLR 82
+L + +D C ++ GK+ LR P T+ D + RQ + ++ ++ AK+ +
Sbjct: 306 SLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYF--KQDWNAEVTAKLSSIL 363
Query: 83 DLERMLPSSTFLSFQ 97
+ L +S F FQ
Sbjct: 364 GRVKAL-NSVFQKFQ 377
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 90 (36.7 bits), Expect = 0.00022, P = 0.00022
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 93 FLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLAL 152
+L+ G VPA + T+ DRI R A L A T++A+LT+ ++R A++ +L +
Sbjct: 15 YLAHLGSYVPAQAATIGLADRIAARC-ATPPLGAATVTFMADLTQVSAMLRTATERTLLV 73
Query: 153 VDE 155
+DE
Sbjct: 74 LDE 76
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 104 (41.7 bits), Expect = 0.00039, P = 0.00039
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 133 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLV 192
Query: 152 LVDE 155
L+DE
Sbjct: 193 LIDE 196
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 104 (41.7 bits), Expect = 0.00039, P = 0.00039
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 134 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLV 193
Query: 152 LVDE 155
L+DE
Sbjct: 194 LIDE 197
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 104 (41.7 bits), Expect = 0.00041, P = 0.00041
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 141 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLV 200
Query: 152 LVDE 155
L+DE
Sbjct: 201 LIDE 204
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 107 (42.7 bits), Expect = 0.00074, P = 0.00074
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 2 LDSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAI 61
LDS+ + L++L N ++ E L C T G R+L L +PL +L I++RQ+ +
Sbjct: 277 LDSSTMKALNILPNGTQKAITSIFE-LFKCKTLGGSRLLSQWLKQPLIDLSLIEERQELV 335
Query: 62 SVLLDQKHITEQMRAKMKDLRDLERML 88
++D + +++ + + D+ R+L
Sbjct: 336 KAMIDDTSLRVEIQEFLSKVPDINRLL 362
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 104 (41.7 bits), Expect = 0.00082, P = 0.00082
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 92 TFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHASKYSLA 151
TF++ G VPA+ + VD IFTR+ + +++S ST++ +L + + +A+ SL
Sbjct: 283 TFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLV 342
Query: 152 LVDE 155
L+DE
Sbjct: 343 LIDE 346
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.130 0.353 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 156 156 0.00073 106 3 10 22 0.48 31
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 146
No. of states in DFA: 578 (61 KB)
Total size of DFA: 160 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.48u 0.12s 23.60t Elapsed: 00:00:02
Total cpu time: 23.50u 0.12s 23.62t Elapsed: 00:00:02
Start: Thu Aug 15 15:45:17 2013 End: Thu Aug 15 15:45:19 2013
WARNINGS ISSUED: 1