RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13255
         (156 letters)



>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III
          {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 72.7 bits (177), Expect = 1e-16
 Identities = 25/86 (29%), Positives = 37/86 (43%)

Query: 3  DSTALANLHVLTNSDNTTEGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAIS 62
          D+    NL +  N     E TL   LD  VT  G RML+  L  P+ +   + +RQ  I 
Sbjct: 1  DAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIG 60

Query: 63 VLLDQKHITEQMRAKMKDLRDLERML 88
           L D     + +  ++ DL  +   L
Sbjct: 61 ALQDFTAGLQPVLRQVGDLERILARL 86


>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III
          {Thermus aquaticus [TaxId: 271]}
          Length = 275

 Score = 70.3 bits (171), Expect = 6e-16
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 21 EGTLIEQLDHCVTSFGKRMLRAQLVKPLTNLDAIKQRQDAISVLLDQKHITEQMRAKMKD 80
          + TL   LD   T+ G+R+L++ L  PL +   ++ R D +   + +  + E +R  +  
Sbjct: 3  QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYR 62

Query: 81 LRDLERML 88
          L DLER+ 
Sbjct: 63 LADLERLA 70


>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
           C-terminal domain {Thermus aquaticus [TaxId: 271]}
          Length = 224

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query: 85  ERMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRH 144
            R       L+  G  VPA+   L   D I+TR+GA D+L+G +ST++ E+ E   I++ 
Sbjct: 52  LRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKE 111

Query: 145 ASKYSLALVDEL 156
           A++ SL L+DE+
Sbjct: 112 ATENSLVLLDEV 123


>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 234

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 29/71 (40%), Positives = 49/71 (69%)

Query: 86  RMLPSSTFLSFQGCRVPADSLTLTPVDRIFTRMGAKDNLSGAQSTYLAELTESETIMRHA 145
           R       +++ G  VPA  + + P+DRIFTR+GA D+L+  +ST++ E+TE+  I+ +A
Sbjct: 59  RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNA 118

Query: 146 SKYSLALVDEL 156
           ++YSL L+DE+
Sbjct: 119 TEYSLVLMDEI 129


>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 24.4 bits (53), Expect = 4.1
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 51 LDAIKQRQDAISVLLDQKHITEQMRAKMKDLRDLERMLPSSTFLSFQG 98
          L++I++ +    +   +     Q+   M+D RD + + P   F +F G
Sbjct: 42 LESIRRGEVPAELR--RLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTG 87


>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
           flexneri [TaxId: 623]}
          Length = 247

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 75  RAKMKDLRDLERMLPSSTFLSFQGCRVPADS---LTLTPVDRIFTRMGAKDNLSGAQS-T 130
             +M+ +      L  +   +F  C  P  +   L    + R+ T     D L G     
Sbjct: 102 MPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIM 161

Query: 131 YLAELTESETIM 142
            L    ++  IM
Sbjct: 162 ELIAHRDAPIIM 173


>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
           1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 267

 Score = 24.0 bits (51), Expect = 8.8
 Identities = 3/14 (21%), Positives = 8/14 (57%)

Query: 93  FLSFQGCRVPADSL 106
           +L     R+P +++
Sbjct: 239 YLKMDNYRIPRENM 252


>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 269

 Score = 24.1 bits (52), Expect = 9.5
 Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 3/36 (8%)

Query: 101 VPADSLTLTP---VDRIFTRMGAKDNLSGAQSTYLA 133
           V     T+TP   VD + T  G   N +        
Sbjct: 182 VEKVLTTVTPGASVDVLVTDHGIAVNPARQDLLDNL 217


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,585
Number of extensions: 19600
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 18
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)