RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13256
(216 letters)
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 69.4 bits (171), Expect = 3e-14
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 26/137 (18%)
Query: 79 CPTSDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFDMTKAA 138
SDGAAA ++ SE R G + A I + + D I G A
Sbjct: 239 SALSDGAAAMLVMSESRARELGLKPRAR-IRSMAVV-------GCDPSIMGYG---PVPA 287
Query: 139 ADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVV 198
+ +K + SDIDV E+++ F+A L + LGL K +
Sbjct: 288 SKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEK---------------I 332
Query: 199 NPSGGLISKGHPLGATG 215
N +GG I+ GHPLG +G
Sbjct: 333 NLNGGAIALGHPLGCSG 349
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 67.5 bits (166), Expect = 1e-13
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 26/136 (19%)
Query: 80 PTSDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFDMTKAAA 139
+DGA+ ++ S + G E AV I MA D I G A
Sbjct: 243 QITDGASCMIVMSAQRAKDLGLEPLAV-IRS--MAVA-----GVDPAIMGYG---PVPAT 291
Query: 140 DRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVN 199
+ ++ + +DID IEL++ F+A L + L + K VN
Sbjct: 292 QKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEK---------------VN 336
Query: 200 PSGGLISKGHPLGATG 215
GG I+ GHP G +G
Sbjct: 337 LHGGAIALGHPFGCSG 352
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 65.6 bits (161), Expect = 6e-13
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 80 PTSDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFDMTKAAA 139
DGAA ++ SE + G A IV +T SD I L G A
Sbjct: 263 GIVDGAALVLVGSEKAGKSQGLTPRAR-IVAT-------ATSGSDPVIMLTG---PTPAT 311
Query: 140 DRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVN 199
++ ++ + DID+ EL++ F++ L + L + K +N
Sbjct: 312 RKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPD---EK---------------LN 353
Query: 200 PSGGLISKGHPLGATG 215
+GG I+ GHPLGATG
Sbjct: 354 VNGGAIAMGHPLGATG 369
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 59.4 bits (145), Expect = 8e-11
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 39/142 (27%)
Query: 80 PTSDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFD---MTK 136
P +DGAAA +L S+D+ + +G A + +A G M
Sbjct: 254 PLNDGAAAVLLVSDDYAKAHGLRPLA-RVRA--IAV--------------AGVPPRIMGI 296
Query: 137 ---AAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYG 193
A + E+ + SD+ +IEL++ F+A L L + +
Sbjct: 297 GPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSL-SMEDQR----------- 344
Query: 194 GKHVVNPSGGLISKGHPLGATG 215
+NP+GG I+ GHPLGA+G
Sbjct: 345 ----LNPNGGAIALGHPLGASG 362
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 58.2 bits (142), Expect = 2e-10
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 41/139 (29%)
Query: 83 DGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFD---MTKA-- 137
DGAA +L S+ G A +I A G + M
Sbjct: 255 DGAAMLILMSQQKADELGIRPLA-KIKSYASA----------------GVEPEVMGTGPI 297
Query: 138 -AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKH 196
A + +K + +DID+IE ++ F+A L L + +K
Sbjct: 298 PATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDS---SK-------------- 340
Query: 197 VVNPSGGLISKGHPLGATG 215
+N +GG I+ GHP+GA+G
Sbjct: 341 -LNVNGGAIALGHPIGASG 358
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 57.9 bits (141), Expect = 3e-10
Identities = 36/144 (25%), Positives = 52/144 (36%), Gaps = 47/144 (32%)
Query: 81 TSDGAAAAVLASEDFVRRYG------FEANAVEIVGLE---MATDTSSTFNSDSCIKLIG 131
SDG A +LA + + VG+ M +G
Sbjct: 252 VSDGVAGVLLARRSVANQLNLPVLGRYIDFQT--VGVPPEIMG---------------VG 294
Query: 132 FDMTKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANT 191
A ++ E T ++ DID+ E+++ F+A L LG+ K
Sbjct: 295 ---PAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDL---NK--------- 339
Query: 192 YGGKHVVNPSGGLISKGHPLGATG 215
VNP GG I+ GHPLG TG
Sbjct: 340 ------VNPRGGAIALGHPLGCTG 357
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 58.0 bits (141), Expect = 3e-10
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 47/145 (32%)
Query: 80 PTSDGAAAAVLASEDFVRRYG------FEANAVEIVGL---EMATDTSSTFNSDSCIKLI 130
SDGA A +L + G F A VG+ M I
Sbjct: 273 QVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAA--VGVDPAIMG---------------I 315
Query: 131 GFDMTKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGAN 190
G A + ++ DID+ E+++ F++ + LGL P K
Sbjct: 316 G---PAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDP---EK-------- 361
Query: 191 TYGGKHVVNPSGGLISKGHPLGATG 215
+N +GG ++ GHPLGATG
Sbjct: 362 -------INVNGGAMAIGHPLGATG 379
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 57.5 bits (140), Expect = 4e-10
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 41/140 (29%)
Query: 82 SDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFD---MTKA- 137
+DGAAAA+L SE R G + IV G D M
Sbjct: 250 NDGAAAALLMSEAEASRRGIQPLG-RIVSWATV----------------GVDPKVMGTGP 292
Query: 138 --AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGK 195
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 293 IPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP---SI------------- 336
Query: 196 HVVNPSGGLISKGHPLGATG 215
VN +GG I+ GHP+GA+G
Sbjct: 337 --VNVNGGAIAIGHPIGASG 354
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 57.5 bits (140), Expect = 4e-10
Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 41/139 (29%)
Query: 83 DGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFD---MTKA-- 137
DGAA V+ +++ G E A IV A G D M
Sbjct: 256 DGAAMLVVMAKEKAEELGIEPLA-TIVSYGTA----------------GVDPKIMGYGPV 298
Query: 138 -AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKH 196
A + E + DID++E ++ F+A + L + K
Sbjct: 299 PATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDM---NK-------------- 341
Query: 197 VVNPSGGLISKGHPLGATG 215
VN +GG I+ GHP+G +G
Sbjct: 342 -VNVNGGAIAIGHPIGCSG 359
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 57.6 bits (140), Expect = 4e-10
Identities = 40/144 (27%), Positives = 54/144 (37%), Gaps = 47/144 (32%)
Query: 81 TSDGAAAAVLASEDFVRRYG------FEANAVEIVGLE---MATDTSSTFNSDSCIKLIG 131
SDGAAA +LA G + AV VG+ M IG
Sbjct: 272 VSDGAAAILLARRSKAEELGLPILGVLRSYAV--VGVPPDIMG---------------IG 314
Query: 132 FDMTKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANT 191
A +K + SD+D+ E+++ F++ E L L P K
Sbjct: 315 ---PAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPP---EK--------- 359
Query: 192 YGGKHVVNPSGGLISKGHPLGATG 215
VNP GG ++ GHPLG TG
Sbjct: 360 ------VNPLGGAVALGHPLGCTG 377
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 57.1 bits (139), Expect = 5e-10
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 35/137 (25%)
Query: 82 SDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFDMTKA---A 138
+DGAAA VL + D +R A IV A D A A
Sbjct: 255 NDGAAALVLMTADAAKRLNVTPLA-RIVAFADAAVEPI-------------DFPIAPVYA 300
Query: 139 ADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVV 198
A + + +K DI + E+++ FS L + L + P K V
Sbjct: 301 ASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDP---QK---------------V 342
Query: 199 NPSGGLISKGHPLGATG 215
N +GG +S GHP+G +G
Sbjct: 343 NINGGAVSLGHPIGMSG 359
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 56.3 bits (137), Expect = 9e-10
Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 41/140 (29%)
Query: 82 SDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFD---MTKA- 137
+DGAAA VL + + G A IV G + M
Sbjct: 255 NDGAAAVVLMKKSEADKRGLTPLA-RIVSWSQV----------------GVEPSIMGIGP 297
Query: 138 --AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGK 195
A + K D+D+ E+++ F+A + LGL P K
Sbjct: 298 IPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNP---EK------------- 341
Query: 196 HVVNPSGGLISKGHPLGATG 215
VN GG I+ GHPLGA+G
Sbjct: 342 --VNIEGGAIALGHPLGASG 359
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 56.3 bits (137), Expect = 1e-09
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 41/139 (29%)
Query: 83 DGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSCIKLIGFD---MTKA-- 137
DG+A VL SE+ + G + A IVG +A G D M
Sbjct: 253 DGSAVLVLMSEEKAKEKGLQPLA-RIVGYSVA----------------GVDPKIMGIGPA 295
Query: 138 -AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKH 196
A + EK D D++E+++ F+A L + L L K
Sbjct: 296 PAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDR---EK-------------- 338
Query: 197 VVNPSGGLISKGHPLGATG 215
VN +G + GHP+G TG
Sbjct: 339 -VNVNGSGVGLGHPIGCTG 356
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 4e-04
Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 55/208 (26%)
Query: 10 SPITAQMFGNAGLEHMKLYGTKPEHFAKIAY---KNHLHSTNNPNSQ---FQVEYTL--- 60
S + + + L+ K++ EH + K L +T +Q +E
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF--TQPALTLMEKAAFED 1746
Query: 61 ---EQIMNSPKIF-G-PL---TKLQCC----PTSD--------GAAAAVLASEDFVRR-- 98
+ ++ + F G L L G V D + R
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 99 YG------------FEANAVEIVGLEMATDTSST-----FNSDSCIKLI-GFDMTKAAAD 140
YG F A++ V + T +N ++ + G A D
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG---DLRALD 1863
Query: 141 RLYEK-TQIKPSDIDVIELHDCFSANEL 167
+ IK ID+IEL S E+
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 27.7 bits (61), Expect = 4.1
Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 68/164 (41%)
Query: 81 TSDGAAAAVL--ASEDFVRRYGFEANAVEIV---------------GLEMATDTSS-TFN 122
TS AA V A F YGF + ++IV G + + S+ F
Sbjct: 1638 TSK-AAQDVWNRADNHFKDTYGF--SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 123 S--DSCIKL------IGFDMTK----AAADRLY--EKTQIKPSDIDVIELHDCFSANELI 168
+ D +K I T + L + TQ P+ + ++E +A E +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--PA-LTLMEK----AAFEDL 1747
Query: 169 TYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHPLG 212
++ GL P F A GH LG
Sbjct: 1748 --KSKGLIPADAT--F----A------------------GHSLG 1765
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 66/228 (28%)
Query: 38 IAYKNHLHSTNNPNSQFQV--EYTLEQIMNSPKIFGPLTKLQCCPTSD-------GA--- 85
I ++ L++ N +++ V ++ + L +L+ P + G+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELR--PAKNVLIDGVLGSGKT 164
Query: 86 --AAAVLASEDFVRRYGFEA--------NAVEIVGLEMATDTSSTFNSDSCIKLIGFDMT 135
A V S + F+ N+ E V LEM + + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 136 K----AAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGL-CPV---GKAKDFIDS 187
K + L + KP + ++ L + +A A L C + + K D
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDF 280
Query: 188 -GANTYGGKHVVNPSGGL-----------------------ISKGHPL 211
A T + + S L + +P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.1 bits (78), Expect = 0.033
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 11/86 (12%)
Query: 131 GFDMTKAAADRLYEKTQIKPSDIDVIELHDC-FSANELITYEALGLCPVGKAKDFIDSGA 189
D A + D+ V H AN+ + + +
Sbjct: 1315 KRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATI--------NEMMKHLG 1366
Query: 190 NTYGGKHVVNPSGGLISKGHPLGATG 215
+ G + L GHP GA G
Sbjct: 1367 RSEGNPVIGVFQKFLT--GHPKGAAG 1390
Score = 30.2 bits (68), Expect = 0.61
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 19/97 (19%)
Query: 82 SDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATD------------------TSSTFNS 123
+ GA ++ D + G + ATD +
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYG-IVAMAATATDKIGRSVPAPGKGILTTAREHHSSVK 1238
Query: 124 DSCIKLIGFDMTKAAADRLYEKTQIKPSDIDVIELHD 160
+ L + R + ++++ ++L
Sbjct: 1239 YASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEA 1275
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.26
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 59 TLEQIMNSPKIFGPLTKLQCCPTSDGAAA-AVLAS 92
L+++ S K++ D A A A+ A+
Sbjct: 21 ALKKLQASLKLYAD----------DSAPALAIKAT 45
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 30.3 bits (69), Expect = 0.43
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 24/107 (22%)
Query: 83 DGAAAAVLASED----------FVRRYGFEANAVEIVGLE-MATDTSSTFNSDSCIKLIG 131
GAAA V+A + V R E N + L+ M TDT G
Sbjct: 192 CGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLI-------EG 244
Query: 132 FDMTKAAADRLYEKTQIKPSDIDVIELHDCFSANELI---TYEALGL 175
+ + + ++D +H + ++ G+
Sbjct: 245 IKLAQKTFVAAKQVLGWAVEELDQFVIH---QVSRPHTAAFVKSFGI 288
Score = 26.8 bits (60), Expect = 5.1
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
D AA + I I ++
Sbjct: 70 DAATQAARKALIDANIGIEKIGLL 93
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 30.2 bits (69), Expect = 0.48
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
D+ A +L EK+ + S+ID I
Sbjct: 54 DLCHQVAKQLLEKSGKQASEIDFI 77
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 29.7 bits (68), Expect = 0.71
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
D+ A + L + +D +
Sbjct: 52 DLAFKAVEDLLRRHPGALEGVDAV 75
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 29.7 bits (68), Expect = 0.71
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
M AA + + P ++D+I
Sbjct: 52 YMATQAAKEALREANLSPEELDLI 75
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 29.4 bits (67), Expect = 0.75
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
D+ A+ + I+P DID+I
Sbjct: 53 DLAYEASVKAIADAGIQPEDIDMI 76
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 29.4 bits (67), Expect = 0.90
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
D+ + A ++L + ID +
Sbjct: 68 DLCRKAGEKLLAGLGWQADSIDAL 91
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 29.4 bits (67), Expect = 0.93
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
M AA E QI P DI++I
Sbjct: 60 TMGFEAAKNAIEAAQINPQDIELI 83
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 29.2 bits (66), Expect = 1.1
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
+M AA++ E+ I +
Sbjct: 119 EMAVTAAEQAIERWGKPRERIGAV 142
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 28.7 bits (65), Expect = 1.4
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
D+ AA +L+ + + +D +
Sbjct: 82 DLAYEAARKLFAQGAVGADQVDFV 105
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 28.7 bits (65), Expect = 1.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
+ AA + E + P DID++
Sbjct: 76 ALMVPAARQAIEAAGLLPEDIDLL 99
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 28.4 bits (64), Expect = 1.9
Identities = 17/118 (14%), Positives = 26/118 (22%), Gaps = 28/118 (23%)
Query: 83 DGAAAAVL-ASEDFVRRYGFEANAV--------EIVGLEMATDTSSTFNSDSCIKLIGFD 133
DGAAA VL + F R S + G +
Sbjct: 166 DGAAALVLSTRDGFARVLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAE 225
Query: 134 MTKAA-------------ADRLYEKTQIKPSDIDVIELHDCFSANELI---TYEALGL 175
+ + E DI + + ++ LGL
Sbjct: 226 LADLPDLTHRYIDLLVAAKTQALEDAGTAIEDIAHAVIP---VSRRGTGHELHDLLGL 280
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 28.2 bits (64), Expect = 2.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
D+ A+ R E I P ID+I
Sbjct: 67 DLAFIASQRAIEAADIDPQSIDLI 90
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 27.8 bits (63), Expect = 2.5
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
M AA R E I+ I +I
Sbjct: 53 TMGFEAATRAIEMAGIEKDQIGLI 76
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 27.7 bits (62), Expect = 3.0
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 40 YKNHLHSTNNPNSQ-FQVEYTLEQIMNSPKIFGPLTKLQCCPTSDGAAAAVLASE 93
Y + + +P + +QVEY LE I ++ G + DG VLA+E
Sbjct: 5 YDSRT-TIFSPEGRLYQVEYALESISHAGTAIGIMAS-------DG---IVLAAE 48
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 26.9 bits (60), Expect = 4.9
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 10/40 (25%)
Query: 54 FQVEYTLEQIMNSPKIFGPLTKLQCCPTSDGAAAAVLASE 93
FQVEY LE + G K + VL E
Sbjct: 16 FQVEYALEAVKRGTCAVGVKGK-------NC---VVLGCE 45
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 26.9 bits (60), Expect = 6.0
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 32/91 (35%)
Query: 82 SDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDS------CIKLIGFDMT 135
DG AAAV+ V + S + +K GF
Sbjct: 197 GDGIAAAVVRGR--------GGTGVRLE------RNGSYLIPKTEDWIMYDVKATGFHFL 242
Query: 136 ------------KAAADRLYEKTQIKPSDID 154
A L + SD+D
Sbjct: 243 LDKRVPATMEPLAPALKELAGEHGWDASDLD 273
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 26.7 bits (60), Expect = 6.0
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 17/93 (18%)
Query: 83 DGAAAAVLASEDFVRRYGFEANAVEIVG-----LEMATDTSSTFNSDSCIKLIGFD---- 133
DGA A VL + D A + G L + + +S D
Sbjct: 159 DGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAV 218
Query: 134 -------MTKAAADRLYEKTQIKPSDIDVIELH 159
M+ + L ++ + SD+ + H
Sbjct: 219 FGQAVTQMSDSVRRVL-DRVGWQASDLHHLVPH 250
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 26.7 bits (59), Expect = 6.3
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
++ AA + + +DI +
Sbjct: 98 ELAAEAAKKAIAEWGRPAADITHL 121
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB;
SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A
{Bacillus subtilis}
Length = 271
Score = 26.5 bits (59), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 128 KLIGFD--MTKAAADRLYEKTQIKPSDIDVIE 157
KL G++ + + AA RL K + K ID +
Sbjct: 45 KLTGYEVEVVREAAKRLGLKVEFKEMGIDGML 76
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 26.7 bits (60), Expect = 6.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
M AA+ R E + P++ID++
Sbjct: 62 VMGVAASRRALEHAGVDPAEIDLV 85
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 26.6 bits (59), Expect = 7.7
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 27/92 (29%)
Query: 82 SDGAAAAVLASEDFVRRYGFEANAVEIVGLEMATDTSSTFNSDSC------IKLIGFDMT 135
DG AA V+ + + G + + S ++ + G
Sbjct: 225 GDGCAALVIGAS--------QVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCE 276
Query: 136 -------------KAAADRLYEKTQIKPSDID 154
+ ++ SDID
Sbjct: 277 LSENLPGYIFSGVAPVVTEMLWDNGLQISDID 308
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 26.5 bits (58), Expect = 8.9
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
+ K AA ++ S I +
Sbjct: 117 KLAKEAAISAIKQWGQPKSKITHL 140
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding
subunit; sugar binding/transporter, structural genomics,
PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Length = 291
Score = 26.2 bits (58), Expect = 9.8
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 81 TSDGAAAAVLASEDFVRRYGFEANAVEIVGL 111
TS+ + + V G + N + G
Sbjct: 104 TSNNYSIGAELALQMVADLGGKGNVLVFNGF 134
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 26.1 bits (58), Expect = 10.0
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 128 KLIGFD--MTKAAADRLYEKTQIKPSDIDVIE 157
IGFD + A + + D D+ E
Sbjct: 42 SYIGFDIDLANAVFKLYGIDVEWQAIDWDMKE 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,287,941
Number of extensions: 189106
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 66
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)