RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13256
(216 letters)
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 42.6 bits (100), Expect = 3e-06
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 18/78 (23%)
Query: 138 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 197
A+ + E+ K D+D++E ++ F+A + LG +
Sbjct: 27 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGW------------------DPSI 68
Query: 198 VNPSGGLISKGHPLGATG 215
VN +GG I+ GHP+GA+G
Sbjct: 69 VNVNGGAIAIGHPIGASG 86
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 42.1 bits (98), Expect = 2e-05
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 57 EYTLEQIMNSPKIF---GPLTKLQCCPTSDGAAAAVLASEDFVRRYG 100
+ +LE++ +F G +T P +DGAAA +L S+D+ + +G
Sbjct: 226 DTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHG 272
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 40.8 bits (95), Expect = 4e-05
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 31 KPEHFAKIAYKNHLHSTNNPNSQFQVEYTLEQIMNSPKIF---GPLTKLQCCPTSDGAAA 87
K E I T + + + TL+ + F G +T +DGAAA
Sbjct: 196 KDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAA 255
Query: 88 AVLASEDFVRRYG 100
A+L SE R G
Sbjct: 256 ALLMSEAEASRRG 268
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 35.7 bits (82), Expect = 0.001
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 138 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 197
A ++ E T ++ DID+ E+++ F+A L LG+ +
Sbjct: 29 AIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDL------------------NK 70
Query: 198 VNPSGGLISKGHPLGATG 215
VNP GG I+ GHPLG TG
Sbjct: 71 VNPRGGAIALGHPLGCTG 88
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 35.6 bits (81), Expect = 0.003
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 34 HFAKIAYKNHLHSTNNPNSQFQVEYTLEQIMNSPKIFGP----LTKLQCCPTSDGAAAAV 89
+ +N + + + + TLE + F P +T +DGA+ +
Sbjct: 193 IPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMI 252
Query: 90 LASEDFVRR 98
+ S +
Sbjct: 253 VMSAQRAKD 261
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 33.8 bits (77), Expect = 0.004
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 148 IKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISK 207
+ SD+ +IEL++ F+A L L + +NP+GG I+
Sbjct: 36 LSFSDLGLIELNEAFAAQALAVLREWSLSMEDQ----------------RLNPNGGAIAL 79
Query: 208 GHPLGATG 215
GHPLGA+G
Sbjct: 80 GHPLGASG 87
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 34.8 bits (79), Expect = 0.004
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 68 KIFGPLTKLQCCPTSDGAAAAVLASEDFVRR 98
K G T SDG A +LA +
Sbjct: 239 KDRGTTTAGNASQVSDGVAGVLLARRSVANQ 269
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 33.5 bits (76), Expect = 0.006
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 138 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 197
A + ++ + +DID IEL++ F+A L + L + K
Sbjct: 28 ATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEK--------------- 72
Query: 198 VNPSGGLISKGHPLGATG 215
VN GG I+ GHP G +G
Sbjct: 73 VNLHGGAIALGHPFGCSG 90
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 26.8 bits (59), Expect = 1.3
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 142 LYEKTQIKPSDIDVIELHDCFSANELI 168
K ++ ++ D +E++ F +++
Sbjct: 42 TIRKEDVRATEKDKVEIYKSFRPGDIV 68
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 25.2 bits (54), Expect = 8.0
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 133 DMTKAAADRLYEKTQIKPSDIDVI 156
+ + R + ++I ++
Sbjct: 94 PLAVDVSKRALAGLPYRAAEIGLL 117
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Cellulomonas sp. [TaxId: 40001]}
Length = 266
Score = 25.0 bits (54), Expect = 8.2
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 132 FDMTKAAADRLYEKTQIKPSDIDVI 156
F + +AAAD + + T ++ D+ ++
Sbjct: 11 FLVARAAADHIAQATGVEGHDMALV 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 779,354
Number of extensions: 33274
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 11
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)