Query psy13257
Match_columns 188
No_of_seqs 123 out of 1264
Neff 10.4
Searched_HMMs 46136
Date Sat Aug 17 00:08:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2.8E-28 6E-33 163.9 18.2 152 35-187 8-159 (160)
2 KOG0027|consensus 99.9 5.4E-26 1.2E-30 155.4 17.6 145 41-185 2-150 (151)
3 PTZ00183 centrin; Provisional 99.9 9.5E-25 2.1E-29 150.5 20.0 152 37-188 7-158 (158)
4 KOG0028|consensus 99.9 2.6E-24 5.7E-29 141.8 16.1 155 32-186 18-172 (172)
5 PTZ00184 calmodulin; Provision 99.9 3.5E-23 7.5E-28 141.2 18.8 145 39-183 3-147 (149)
6 KOG0031|consensus 99.9 1.1E-21 2.4E-26 128.5 16.1 146 35-184 20-165 (171)
7 KOG0030|consensus 99.9 8.2E-21 1.8E-25 122.4 14.3 144 39-183 3-150 (152)
8 KOG0037|consensus 99.9 4.3E-20 9.3E-25 128.2 18.4 133 45-184 55-188 (221)
9 KOG0034|consensus 99.9 6.7E-20 1.5E-24 127.5 16.2 145 39-187 25-178 (187)
10 KOG0044|consensus 99.8 1.9E-17 4.1E-22 115.4 15.3 146 38-186 20-177 (193)
11 KOG0036|consensus 99.8 3.7E-17 8E-22 123.1 16.3 142 39-186 6-148 (463)
12 PLN02964 phosphatidylserine de 99.5 1.1E-12 2.5E-17 106.5 14.5 105 39-148 135-243 (644)
13 KOG4223|consensus 99.5 2.9E-13 6.3E-18 99.6 9.8 146 40-185 69-229 (325)
14 PF13499 EF-hand_7: EF-hand do 99.4 7.9E-13 1.7E-17 77.6 7.8 62 121-182 1-66 (66)
15 cd05022 S-100A13 S-100A13: S-1 99.4 6.9E-13 1.5E-17 81.8 7.5 66 120-185 8-76 (89)
16 KOG0038|consensus 99.4 1.3E-11 2.9E-16 80.7 11.8 146 39-188 20-181 (189)
17 KOG0027|consensus 99.4 1.2E-11 2.7E-16 84.5 11.7 103 82-185 7-114 (151)
18 KOG4223|consensus 99.4 6.6E-12 1.4E-16 92.5 9.7 136 45-180 161-301 (325)
19 KOG0037|consensus 99.3 2.1E-11 4.4E-16 85.3 10.6 126 40-181 90-217 (221)
20 KOG0377|consensus 99.3 4.3E-11 9.3E-16 91.6 13.1 136 47-184 464-615 (631)
21 cd05027 S-100B S-100B: S-100B 99.3 1.3E-11 2.8E-16 76.3 8.4 64 121-184 9-79 (88)
22 KOG0044|consensus 99.3 1E-10 2.2E-15 81.9 13.0 121 63-185 8-129 (193)
23 PTZ00183 centrin; Provisional 99.3 1.2E-10 2.5E-15 80.1 13.2 102 83-185 17-119 (158)
24 cd05022 S-100A13 S-100A13: S-1 99.3 2.5E-11 5.5E-16 74.9 8.4 70 44-113 5-77 (89)
25 PF13499 EF-hand_7: EF-hand do 99.3 2.7E-11 5.9E-16 71.0 7.2 62 48-109 1-66 (66)
26 cd05029 S-100A6 S-100A6: S-100 99.3 4.3E-11 9.3E-16 73.9 8.0 65 121-185 11-80 (88)
27 COG5126 FRQ1 Ca2+-binding prot 99.3 2.2E-10 4.8E-15 77.6 12.1 101 83-185 20-121 (160)
28 PTZ00184 calmodulin; Provision 99.3 2.4E-10 5.2E-15 77.6 12.5 102 83-185 11-113 (149)
29 cd05031 S-100A10_like S-100A10 99.2 3.7E-11 8E-16 75.5 6.9 68 119-186 7-81 (94)
30 PF13833 EF-hand_8: EF-hand do 99.2 7E-11 1.5E-15 66.4 7.0 52 133-184 1-53 (54)
31 cd05027 S-100B S-100B: S-100B 99.2 2E-10 4.4E-15 70.9 9.3 69 44-112 5-80 (88)
32 cd05026 S-100Z S-100Z: S-100Z 99.2 1.2E-10 2.7E-15 72.8 8.2 65 121-185 11-82 (93)
33 cd05025 S-100A1 S-100A1: S-100 99.2 1.5E-10 3.3E-15 72.4 8.4 67 119-185 8-81 (92)
34 smart00027 EH Eps15 homology d 99.2 3.3E-10 7.1E-15 71.4 9.6 72 39-112 2-73 (96)
35 cd00052 EH Eps15 homology doma 99.2 1.1E-10 2.5E-15 68.4 6.5 61 123-185 2-62 (67)
36 smart00027 EH Eps15 homology d 99.2 2.8E-10 6.1E-15 71.7 8.5 66 118-185 8-73 (96)
37 cd05029 S-100A6 S-100A6: S-100 99.1 8E-10 1.7E-14 68.2 9.2 71 43-113 6-81 (88)
38 cd00213 S-100 S-100: S-100 dom 99.1 3.6E-10 7.8E-15 70.1 7.6 66 119-184 7-79 (88)
39 PLN02964 phosphatidylserine de 99.1 1.9E-09 4E-14 88.2 12.5 120 62-185 119-244 (644)
40 cd00051 EFh EF-hand, calcium b 99.1 7.8E-10 1.7E-14 63.4 7.6 61 122-182 2-62 (63)
41 cd05023 S-100A11 S-100A11: S-1 99.1 1E-09 2.2E-14 67.9 8.4 66 120-185 9-81 (89)
42 KOG2562|consensus 99.1 1.6E-09 3.6E-14 83.5 11.1 130 47-180 278-420 (493)
43 KOG0034|consensus 99.1 3E-09 6.5E-14 74.5 10.8 111 39-149 49-176 (187)
44 cd05026 S-100Z S-100Z: S-100Z 99.1 2.4E-09 5.2E-14 67.0 9.3 70 44-113 7-83 (93)
45 cd00213 S-100 S-100: S-100 dom 99.1 1.7E-09 3.6E-14 67.1 8.5 70 43-112 4-80 (88)
46 KOG0028|consensus 99.1 7.3E-09 1.6E-13 69.1 11.4 102 83-185 33-135 (172)
47 cd05025 S-100A1 S-100A1: S-100 99.0 3.6E-09 7.9E-14 66.1 9.3 68 45-112 7-81 (92)
48 cd05031 S-100A10_like S-100A10 99.0 3.2E-09 7E-14 66.6 8.9 67 45-111 6-79 (94)
49 PF14658 EF-hand_9: EF-hand do 99.0 2.3E-09 5E-14 61.4 7.0 61 124-184 2-64 (66)
50 PF13833 EF-hand_8: EF-hand do 99.0 2.1E-09 4.6E-14 60.2 6.5 52 60-111 1-53 (54)
51 KOG0040|consensus 99.0 1.9E-08 4.1E-13 86.9 14.2 138 38-183 2244-2397(2399)
52 cd00252 SPARC_EC SPARC_EC; ext 99.0 3.5E-09 7.7E-14 68.5 7.7 63 118-184 46-108 (116)
53 cd00052 EH Eps15 homology doma 99.0 4.1E-09 8.8E-14 61.7 7.3 61 50-112 2-62 (67)
54 KOG2643|consensus 99.0 9.7E-09 2.1E-13 78.8 10.6 131 48-184 319-453 (489)
55 cd05030 calgranulins Calgranul 98.9 4.6E-09 9.9E-14 65.0 7.1 65 121-185 9-80 (88)
56 cd05023 S-100A11 S-100A11: S-1 98.9 1.4E-08 3.1E-13 62.8 9.1 71 43-113 5-82 (89)
57 KOG0041|consensus 98.9 2.1E-08 4.5E-13 69.4 9.6 116 29-144 81-199 (244)
58 cd00051 EFh EF-hand, calcium b 98.9 1.2E-08 2.7E-13 58.2 7.5 61 49-109 2-62 (63)
59 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.1E-08 6.7E-13 64.2 8.4 64 42-109 43-106 (116)
60 KOG2643|consensus 98.8 5.2E-08 1.1E-12 74.9 9.2 131 47-183 233-383 (489)
61 KOG4251|consensus 98.8 2.3E-08 5E-13 71.4 6.7 136 45-181 99-261 (362)
62 cd05030 calgranulins Calgranul 98.8 9.2E-08 2E-12 59.1 8.1 69 44-112 5-80 (88)
63 PF14658 EF-hand_9: EF-hand do 98.7 9.8E-08 2.1E-12 54.7 6.6 60 52-111 3-64 (66)
64 KOG0041|consensus 98.7 1.3E-07 2.9E-12 65.5 8.3 78 102-185 87-164 (244)
65 KOG0036|consensus 98.7 3.7E-07 8.1E-12 69.9 11.2 99 82-185 13-111 (463)
66 cd05024 S-100A10 S-100A10: A s 98.6 5.1E-07 1.1E-11 55.5 8.2 63 121-184 9-76 (91)
67 cd05024 S-100A10 S-100A10: A s 98.6 1.1E-06 2.5E-11 53.9 9.3 68 44-112 5-77 (91)
68 PF12763 EF-hand_4: Cytoskelet 98.6 5.6E-07 1.2E-11 57.1 8.3 64 117-183 7-70 (104)
69 KOG4666|consensus 98.6 8E-08 1.7E-12 71.3 4.7 125 59-188 239-363 (412)
70 PF00036 EF-hand_1: EF hand; 98.6 1.6E-07 3.5E-12 45.2 4.0 27 122-148 2-28 (29)
71 KOG0751|consensus 98.5 2.9E-06 6.2E-11 66.6 11.6 110 38-150 27-138 (694)
72 PF00036 EF-hand_1: EF hand; 98.5 2.4E-07 5.2E-12 44.6 3.4 28 157-184 1-28 (29)
73 PF12763 EF-hand_4: Cytoskelet 98.5 7.2E-07 1.6E-11 56.6 6.4 70 39-111 2-71 (104)
74 KOG0751|consensus 98.5 1.1E-06 2.4E-11 68.8 8.5 123 50-180 111-240 (694)
75 KOG0169|consensus 98.4 7.7E-06 1.7E-10 67.3 12.9 140 41-185 130-275 (746)
76 KOG1029|consensus 98.4 1E-05 2.3E-10 66.6 13.4 141 37-182 6-255 (1118)
77 PF13405 EF-hand_6: EF-hand do 98.4 5.3E-07 1.1E-11 44.3 4.0 30 121-150 1-31 (31)
78 KOG0031|consensus 98.3 7.2E-06 1.6E-10 54.7 7.8 87 60-147 77-164 (171)
79 KOG0038|consensus 98.3 8.6E-06 1.9E-10 53.8 8.0 101 50-150 74-179 (189)
80 KOG2562|consensus 98.2 1.1E-05 2.4E-10 62.8 9.1 134 47-184 225-379 (493)
81 KOG4251|consensus 98.2 8.1E-06 1.7E-10 58.7 7.5 134 47-180 198-341 (362)
82 PF13405 EF-hand_6: EF-hand do 98.2 2.6E-06 5.7E-11 41.7 3.5 30 48-77 1-31 (31)
83 KOG0377|consensus 98.2 7.9E-06 1.7E-10 63.4 7.5 66 47-112 547-616 (631)
84 PRK12309 transaldolase/EF-hand 98.2 9.7E-06 2.1E-10 63.4 8.2 55 118-185 332-386 (391)
85 PF14788 EF-hand_10: EF hand; 98.1 1.4E-05 3E-10 43.3 5.7 48 64-111 2-49 (51)
86 PF13202 EF-hand_5: EF hand; P 98.1 6E-06 1.3E-10 38.2 3.4 23 123-145 2-24 (25)
87 KOG0030|consensus 98.1 0.00012 2.6E-09 48.1 10.1 103 81-184 9-116 (152)
88 PF14788 EF-hand_10: EF hand; 98.0 3.3E-05 7.1E-10 41.9 5.8 48 137-184 2-49 (51)
89 KOG0046|consensus 98.0 4.9E-05 1.1E-09 60.2 8.2 75 38-113 10-87 (627)
90 PRK12309 transaldolase/EF-hand 97.9 7.3E-05 1.6E-09 58.5 8.2 60 76-149 327-386 (391)
91 PF13202 EF-hand_5: EF hand; P 97.9 2.5E-05 5.3E-10 36.2 3.1 25 158-182 1-25 (25)
92 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.7E-05 3.8E-10 51.2 1.8 63 117-181 51-113 (113)
93 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.1E-05 2.4E-10 52.1 0.8 58 47-106 54-111 (113)
94 KOG0040|consensus 97.6 0.00039 8.5E-09 61.5 9.2 96 83-179 2253-2356(2399)
95 PF09279 EF-hand_like: Phospho 97.6 0.00022 4.8E-09 43.4 5.5 64 121-185 1-70 (83)
96 KOG1707|consensus 97.4 0.0043 9.3E-08 50.4 11.0 143 38-183 186-376 (625)
97 KOG0046|consensus 97.2 0.0021 4.5E-08 51.4 7.7 64 119-183 18-84 (627)
98 KOG1955|consensus 97.1 0.0027 5.8E-08 50.5 7.7 75 37-113 221-295 (737)
99 smart00054 EFh EF-hand, calciu 97.1 0.00097 2.1E-08 30.9 3.1 25 123-147 3-27 (29)
100 KOG4065|consensus 97.0 0.0028 6E-08 40.4 5.6 57 125-181 72-142 (144)
101 smart00054 EFh EF-hand, calciu 97.0 0.0015 3.3E-08 30.2 3.6 26 159-184 3-28 (29)
102 PF05042 Caleosin: Caleosin re 97.0 0.012 2.6E-07 40.6 8.8 134 48-182 8-164 (174)
103 KOG4666|consensus 97.0 0.0044 9.6E-08 46.7 7.1 102 47-150 259-361 (412)
104 PF09069 EF-hand_3: EF-hand; 97.0 0.014 3E-07 35.9 8.1 66 119-187 2-78 (90)
105 KOG0035|consensus 96.9 0.019 4E-07 49.2 11.3 106 38-144 738-848 (890)
106 KOG1955|consensus 96.9 0.0028 6.2E-08 50.3 5.9 63 119-183 230-292 (737)
107 PLN02952 phosphoinositide phos 96.7 0.023 5E-07 47.1 10.1 88 96-184 13-110 (599)
108 KOG0998|consensus 96.7 0.0094 2E-07 51.6 8.2 142 38-184 120-345 (847)
109 KOG4065|consensus 96.6 0.015 3.3E-07 37.1 6.6 68 38-107 60-141 (144)
110 PF09279 EF-hand_like: Phospho 96.6 0.0098 2.1E-07 36.1 5.5 64 85-149 2-70 (83)
111 KOG3555|consensus 96.5 0.014 3.1E-07 44.4 7.0 117 40-162 200-323 (434)
112 KOG2243|consensus 95.8 0.018 3.9E-07 51.4 5.2 58 125-183 4062-4119(5019)
113 KOG4578|consensus 95.6 0.015 3.2E-07 44.0 3.4 63 121-185 334-399 (421)
114 KOG1029|consensus 95.6 0.11 2.5E-06 43.8 8.6 67 42-110 190-256 (1118)
115 KOG0042|consensus 95.2 0.11 2.4E-06 42.4 7.3 79 35-113 581-659 (680)
116 KOG0169|consensus 95.1 0.34 7.4E-06 41.0 10.0 99 81-184 134-232 (746)
117 KOG4347|consensus 95.1 0.19 4.1E-06 41.6 8.4 106 35-142 492-612 (671)
118 PF05517 p25-alpha: p25-alpha 94.9 0.28 6.1E-06 33.6 7.8 59 126-184 8-69 (154)
119 KOG1265|consensus 94.8 1.5 3.3E-05 38.1 13.0 119 59-184 160-299 (1189)
120 KOG3555|consensus 94.3 0.078 1.7E-06 40.6 4.2 65 117-185 247-311 (434)
121 KOG0042|consensus 94.2 0.11 2.3E-06 42.5 4.9 64 122-185 595-658 (680)
122 PF05042 Caleosin: Caleosin re 93.6 1.7 3.6E-05 30.2 9.4 32 153-184 93-124 (174)
123 KOG4578|consensus 93.4 0.063 1.4E-06 40.7 2.4 64 85-148 335-398 (421)
124 PF05517 p25-alpha: p25-alpha 93.4 0.73 1.6E-05 31.5 7.4 64 50-113 2-71 (154)
125 KOG1707|consensus 93.3 0.32 7E-06 40.0 6.3 96 34-132 302-398 (625)
126 PLN02952 phosphoinositide phos 92.5 2 4.4E-05 36.0 9.9 87 60-147 13-109 (599)
127 KOG4347|consensus 91.9 0.42 9.1E-06 39.7 5.3 57 120-177 555-611 (671)
128 KOG4286|consensus 91.9 5.8 0.00013 34.1 11.7 100 85-188 472-584 (966)
129 PF08726 EFhand_Ca_insen: Ca2+ 90.9 0.33 7.1E-06 28.3 2.8 55 118-180 4-65 (69)
130 KOG0035|consensus 90.4 0.96 2.1E-05 39.3 6.2 67 119-185 746-817 (890)
131 PLN02222 phosphoinositide phos 90.1 1.6 3.5E-05 36.4 7.2 64 119-184 24-90 (581)
132 KOG2243|consensus 89.7 0.78 1.7E-05 41.9 5.2 59 51-110 4061-4119(5019)
133 KOG3866|consensus 89.6 0.66 1.4E-05 35.2 4.2 59 125-183 249-323 (442)
134 KOG0998|consensus 89.6 0.4 8.7E-06 41.9 3.5 70 40-111 276-345 (847)
135 KOG1264|consensus 88.9 4.3 9.3E-05 35.3 8.7 143 40-183 136-292 (1267)
136 PF12174 RST: RCD1-SRO-TAF4 (R 88.7 0.43 9.4E-06 27.9 2.2 48 98-149 7-54 (70)
137 PLN02228 Phosphoinositide phos 88.2 3.2 6.9E-05 34.7 7.6 63 119-183 23-91 (567)
138 PLN02230 phosphoinositide phos 86.0 5 0.00011 33.8 7.6 66 118-184 27-102 (598)
139 PF14513 DAG_kinase_N: Diacylg 85.1 8.7 0.00019 25.8 7.1 71 60-132 4-81 (138)
140 cd07313 terB_like_2 tellurium 85.0 5.5 0.00012 24.9 6.0 81 60-142 12-94 (104)
141 KOG3866|consensus 84.7 3.5 7.6E-05 31.5 5.6 22 125-146 301-322 (442)
142 PRK09430 djlA Dna-J like membr 84.2 16 0.00034 27.6 10.3 97 59-165 67-175 (267)
143 KOG0039|consensus 83.5 3.3 7.1E-05 35.3 5.7 67 117-184 15-89 (646)
144 PF14513 DAG_kinase_N: Diacylg 82.9 3.5 7.6E-05 27.7 4.5 30 136-165 48-78 (138)
145 PLN02223 phosphoinositide phos 82.2 7.1 0.00015 32.4 6.9 66 118-184 14-92 (537)
146 PF07308 DUF1456: Protein of u 82.2 6.9 0.00015 22.7 5.1 46 138-183 15-60 (68)
147 KOG2871|consensus 81.9 1.7 3.6E-05 34.0 3.1 62 118-179 307-369 (449)
148 PF11116 DUF2624: Protein of u 80.9 10 0.00022 23.1 6.2 42 136-177 14-55 (85)
149 PF02761 Cbl_N2: CBL proto-onc 80.2 11 0.00024 23.0 6.9 69 80-150 4-72 (85)
150 PF09068 EF-hand_2: EF hand; 78.2 17 0.00036 24.0 7.4 28 121-148 98-125 (127)
151 KOG4070|consensus 76.4 10 0.00022 25.8 5.0 83 47-129 12-107 (180)
152 PLN02228 Phosphoinositide phos 74.9 23 0.0005 29.8 7.8 71 34-109 14-90 (567)
153 PF05099 TerB: Tellurite resis 74.1 2.9 6.4E-05 27.7 2.2 89 60-150 36-129 (140)
154 PF08976 DUF1880: Domain of un 73.4 3.6 7.7E-05 26.6 2.3 32 80-111 4-35 (118)
155 PF13623 SurA_N_2: SurA N-term 73.3 26 0.00056 23.8 7.4 79 97-182 46-145 (145)
156 KOG1265|consensus 71.9 59 0.0013 29.1 9.5 80 66-148 207-299 (1189)
157 TIGR01848 PHA_reg_PhaR polyhyd 70.3 19 0.00041 22.9 4.9 21 91-111 11-31 (107)
158 PF08414 NADPH_Ox: Respiratory 69.4 9.5 0.00021 23.9 3.5 61 46-111 29-92 (100)
159 PF00404 Dockerin_1: Dockerin 69.3 8.7 0.00019 16.7 2.4 16 57-72 1-16 (21)
160 PLN02222 phosphoinositide phos 69.1 29 0.00063 29.3 7.2 68 39-111 20-90 (581)
161 KOG3449|consensus 68.6 28 0.00061 22.3 6.3 42 124-165 5-46 (112)
162 COG4103 Uncharacterized protei 68.1 12 0.00025 25.2 3.9 59 124-185 34-95 (148)
163 cd07313 terB_like_2 tellurium 67.9 11 0.00024 23.5 3.8 80 96-177 12-93 (104)
164 PF12174 RST: RCD1-SRO-TAF4 (R 67.2 13 0.00029 21.7 3.6 31 81-111 23-53 (70)
165 PF07879 PHB_acc_N: PHB/PHA ac 66.8 13 0.00027 21.3 3.3 37 127-163 10-56 (64)
166 PF11116 DUF2624: Protein of u 65.9 28 0.0006 21.2 8.0 68 62-129 13-82 (85)
167 PF01023 S_100: S-100/ICaBP ty 62.4 21 0.00046 18.6 4.2 31 45-75 4-36 (44)
168 PLN02230 phosphoinositide phos 61.5 60 0.0013 27.6 7.7 63 48-111 30-102 (598)
169 PTZ00373 60S Acidic ribosomal 60.3 40 0.00086 21.8 5.2 41 126-166 9-49 (112)
170 PF01885 PTS_2-RNA: RNA 2'-pho 60.2 22 0.00048 25.2 4.4 38 129-166 25-62 (186)
171 PF09069 EF-hand_3: EF-hand; 59.2 40 0.00087 20.8 8.0 62 47-111 3-75 (90)
172 PRK00819 RNA 2'-phosphotransfe 58.7 31 0.00067 24.3 4.9 34 131-164 28-61 (179)
173 TIGR03573 WbuX N-acetyl sugar 56.9 33 0.00071 26.8 5.3 44 133-182 299-342 (343)
174 COG4359 Uncharacterized conser 56.4 71 0.0015 22.8 7.2 14 97-110 11-24 (220)
175 KOG2301|consensus 56.3 8.3 0.00018 36.4 2.1 71 40-111 1410-1484(1592)
176 KOG4403|consensus 55.5 71 0.0015 25.9 6.7 28 47-74 68-95 (575)
177 cd05833 Ribosomal_P2 Ribosomal 55.5 53 0.0011 21.1 5.1 50 126-180 7-56 (109)
178 PF09336 Vps4_C: Vps4 C termin 54.7 19 0.00041 20.4 2.7 26 136-161 29-54 (62)
179 PF09068 EF-hand_2: EF hand; 54.4 48 0.001 21.9 5.0 64 120-183 41-124 (127)
180 TIGR01639 P_fal_TIGR01639 Plas 54.3 37 0.00081 19.1 3.9 32 61-92 7-38 (61)
181 PLN02223 phosphoinositide phos 53.5 1.3E+02 0.0027 25.4 8.1 68 40-111 12-92 (537)
182 PF08461 HTH_12: Ribonuclease 52.6 30 0.00066 19.8 3.4 37 60-96 10-46 (66)
183 KOG4403|consensus 52.2 29 0.00062 28.0 4.2 61 80-144 65-125 (575)
184 PF12419 DUF3670: SNF2 Helicas 51.9 34 0.00074 22.9 4.1 49 133-181 80-138 (141)
185 PF03979 Sigma70_r1_1: Sigma-7 51.1 16 0.00035 21.9 2.2 30 134-165 19-48 (82)
186 PF11829 DUF3349: Protein of u 50.9 60 0.0013 20.3 4.7 29 64-92 20-48 (96)
187 COG4103 Uncharacterized protei 50.9 72 0.0016 21.6 5.3 89 51-144 34-125 (148)
188 PF07308 DUF1456: Protein of u 49.9 50 0.0011 19.1 5.6 42 64-105 14-55 (68)
189 PF08414 NADPH_Ox: Respiratory 49.9 64 0.0014 20.3 6.8 59 122-185 32-93 (100)
190 KOG3449|consensus 48.1 72 0.0016 20.5 6.6 53 51-108 5-57 (112)
191 COG3763 Uncharacterized protei 47.7 56 0.0012 19.1 5.0 32 61-92 36-67 (71)
192 cd07316 terB_like_DjlA N-termi 47.3 67 0.0015 19.8 8.0 81 60-142 12-95 (106)
193 KOG4301|consensus 46.5 41 0.00088 26.3 4.1 58 125-183 115-172 (434)
194 PF12631 GTPase_Cys_C: Catalyt 45.4 40 0.00086 19.7 3.3 45 121-165 24-72 (73)
195 KOG2301|consensus 45.1 17 0.00036 34.5 2.2 67 117-184 1414-1484(1592)
196 KOG4004|consensus 44.5 12 0.00025 26.8 1.0 23 158-180 224-246 (259)
197 PF09373 PMBR: Pseudomurein-bi 44.2 11 0.00024 18.3 0.6 14 171-184 3-16 (33)
198 PF03672 UPF0154: Uncharacteri 44.0 63 0.0014 18.6 4.1 32 61-92 29-60 (64)
199 COG2036 HHT1 Histones H3 and H 44.0 77 0.0017 19.6 6.3 77 67-151 7-86 (91)
200 KOG1954|consensus 43.4 43 0.00093 26.8 3.9 55 122-179 446-500 (532)
201 PLN00138 large subunit ribosom 42.8 92 0.002 20.2 5.1 35 131-165 12-46 (113)
202 cd03035 ArsC_Yffb Arsenate Red 41.5 86 0.0019 19.8 4.6 50 135-187 34-86 (105)
203 PF05819 NolX: NolX protein; 41.0 2.1E+02 0.0046 23.9 8.9 108 51-160 303-453 (624)
204 KOG0039|consensus 41.0 97 0.0021 26.7 6.0 79 64-148 4-89 (646)
205 KOG2871|consensus 40.5 47 0.001 26.3 3.7 65 46-110 308-373 (449)
206 PF00046 Homeobox: Homeobox do 40.1 62 0.0013 17.4 6.1 46 38-90 4-49 (57)
207 cd04411 Ribosomal_P1_P2_L12p R 39.6 1E+02 0.0022 19.7 5.3 41 137-182 17-57 (105)
208 PF06648 DUF1160: Protein of u 39.0 1.1E+02 0.0024 20.1 5.4 44 103-149 37-80 (122)
209 PF08730 Rad33: Rad33; InterP 38.9 1.3E+02 0.0029 20.9 12.5 89 40-129 7-132 (170)
210 PF12486 DUF3702: ImpA domain 38.8 65 0.0014 22.0 3.8 37 39-75 61-97 (148)
211 KOG3077|consensus 38.8 1.7E+02 0.0037 22.1 11.9 68 45-112 62-130 (260)
212 KOG1954|consensus 38.7 93 0.002 25.0 5.1 58 48-108 445-502 (532)
213 PF12983 DUF3867: Protein of u 38.6 1.4E+02 0.003 21.0 6.8 53 96-169 33-89 (186)
214 cd07176 terB tellurite resista 37.5 80 0.0017 19.6 4.1 79 60-141 15-98 (111)
215 PF12987 DUF3871: Domain of un 37.3 1.9E+02 0.0042 22.3 6.8 66 120-185 192-286 (323)
216 COG2818 Tag 3-methyladenine DN 36.7 25 0.00054 24.9 1.6 40 119-158 54-93 (188)
217 PF04876 Tenui_NCP: Tenuivirus 36.6 1.3E+02 0.0028 20.5 4.9 28 85-112 85-112 (175)
218 PRK00523 hypothetical protein; 36.3 93 0.002 18.3 4.7 32 61-92 37-68 (72)
219 TIGR02675 tape_meas_nterm tape 35.5 57 0.0012 19.2 2.8 13 134-146 28-40 (75)
220 COG5562 Phage envelope protein 34.7 31 0.00066 23.0 1.7 20 166-185 82-101 (137)
221 cd00086 homeodomain Homeodomai 33.7 80 0.0017 16.8 6.7 47 38-91 4-50 (59)
222 PF02761 Cbl_N2: CBL proto-onc 33.6 1.2E+02 0.0025 18.6 6.4 48 135-182 21-68 (85)
223 PF11020 DUF2610: Domain of un 33.0 1E+02 0.0022 18.6 3.5 36 148-183 41-76 (82)
224 PF07128 DUF1380: Protein of u 33.0 75 0.0016 21.4 3.3 31 137-167 27-57 (139)
225 KOG4301|consensus 32.9 2.5E+02 0.0054 22.2 11.0 143 36-185 45-216 (434)
226 TIGR01565 homeo_ZF_HD homeobox 32.7 95 0.0021 17.4 5.3 37 37-78 4-44 (58)
227 PF07862 Nif11: Nitrogen fixat 32.1 74 0.0016 16.7 2.7 21 138-158 28-48 (49)
228 KOG4004|consensus 31.6 32 0.00069 24.7 1.5 26 118-143 220-245 (259)
229 KOG4629|consensus 31.5 1.2E+02 0.0026 26.5 5.1 58 120-184 404-461 (714)
230 TIGR00135 gatC glutamyl-tRNA(G 31.3 1.2E+02 0.0025 18.6 3.9 25 137-161 1-25 (93)
231 PHA02105 hypothetical protein 31.3 1E+02 0.0022 17.2 3.3 50 137-186 5-59 (68)
232 cd00076 H4 Histone H4, one of 31.2 1.3E+02 0.0028 18.4 8.0 69 79-152 13-81 (85)
233 smart00222 Sec7 Sec7 domain. D 30.9 1.9E+02 0.0042 20.4 10.3 37 130-166 145-183 (187)
234 PTZ00373 60S Acidic ribosomal 30.2 1.6E+02 0.0034 19.1 6.8 51 52-107 8-58 (112)
235 PTZ00015 histone H4; Provision 29.9 1.5E+02 0.0033 18.8 8.3 68 79-151 30-97 (102)
236 cd04790 HTH_Cfa-like_unk Helix 29.7 2E+02 0.0043 20.0 5.7 33 38-74 37-69 (172)
237 COG5611 Predicted nucleic-acid 29.6 1.6E+02 0.0036 19.2 6.4 47 119-165 20-68 (130)
238 PF08044 DUF1707: Domain of un 29.1 97 0.0021 16.9 2.9 13 134-146 21-33 (53)
239 KOG3077|consensus 29.0 2.6E+02 0.0055 21.2 6.7 21 130-150 75-95 (260)
240 PF13551 HTH_29: Winged helix- 28.1 1.5E+02 0.0033 18.2 7.6 52 41-92 58-111 (112)
241 PRK09430 djlA Dna-J like membr 28.0 1.6E+02 0.0035 22.2 4.8 10 97-106 69-78 (267)
242 PF09312 SurA_N: SurA N-termin 28.0 97 0.0021 19.9 3.3 13 172-184 98-110 (118)
243 COG5069 SAC6 Ca2+-binding acti 27.9 1.6E+02 0.0034 24.5 4.9 81 45-130 483-564 (612)
244 PF08671 SinI: Anti-repressor 27.5 65 0.0014 15.4 1.7 11 137-147 17-27 (30)
245 PRK14981 DNA-directed RNA poly 27.3 1.4E+02 0.003 19.2 3.8 26 139-164 81-106 (112)
246 KOG0506|consensus 27.1 2.2E+02 0.0048 23.7 5.5 60 51-110 90-157 (622)
247 COG1859 KptA RNA:NAD 2'-phosph 26.9 1.3E+02 0.0029 21.8 4.0 36 130-165 53-88 (211)
248 cd08324 CARD_NOD1_CARD4 Caspas 26.7 1.6E+02 0.0034 18.0 4.4 12 134-145 27-38 (85)
249 PRK01844 hypothetical protein; 26.6 1.5E+02 0.0031 17.5 4.6 32 61-92 36-67 (72)
250 PRK06402 rpl12p 50S ribosomal 25.7 1.9E+02 0.0041 18.5 5.4 30 136-165 16-45 (106)
251 TIGR03573 WbuX N-acetyl sugar 25.5 2.2E+02 0.0048 22.3 5.4 65 69-146 276-342 (343)
252 PF10897 DUF2713: Protein of u 25.5 2.6E+02 0.0057 20.2 5.2 41 97-137 175-226 (246)
253 TIGR03798 ocin_TIGR03798 bacte 25.2 1.4E+02 0.003 16.8 3.7 25 137-161 25-49 (64)
254 PRK00034 gatC aspartyl/glutamy 25.0 1.7E+02 0.0037 17.8 4.0 25 137-161 3-27 (95)
255 COG1460 Uncharacterized protei 24.7 1.2E+02 0.0026 19.7 3.1 28 138-165 81-108 (114)
256 PF04695 Pex14_N: Peroxisomal 24.5 2.2E+02 0.0048 18.9 6.0 48 120-169 4-51 (136)
257 PF14848 HU-DNA_bdg: DNA-bindi 24.3 1.9E+02 0.004 18.9 4.1 31 134-164 26-56 (124)
258 KOG4286|consensus 24.1 1.5E+02 0.0033 26.1 4.4 98 81-179 418-528 (966)
259 PF13075 DUF3939: Protein of u 24.0 35 0.00077 22.8 0.6 13 137-149 10-22 (140)
260 PF03556 Cullin_binding: Culli 23.8 2.1E+02 0.0046 18.5 4.3 80 97-183 38-117 (117)
261 PF14771 DUF4476: Domain of un 23.7 1.8E+02 0.004 17.7 9.3 50 63-113 4-53 (95)
262 PF00690 Cation_ATPase_N: Cati 23.7 1.2E+02 0.0026 17.1 2.8 28 123-150 7-34 (69)
263 KOG1785|consensus 23.4 4.1E+02 0.0088 21.6 6.3 68 80-149 172-239 (563)
264 PF15144 DUF4576: Domain of un 22.6 37 0.0008 20.2 0.5 41 132-173 36-76 (88)
265 PF10165 Ric8: Guanine nucleot 22.6 2E+02 0.0044 23.5 4.8 33 34-66 400-434 (446)
266 PLN02508 magnesium-protoporphy 22.5 1.5E+02 0.0033 23.2 3.8 89 76-170 34-124 (357)
267 KOG0113|consensus 22.3 1.7E+02 0.0038 22.6 4.0 86 46-131 40-127 (335)
268 PF11363 DUF3164: Protein of u 22.3 3E+02 0.0066 19.7 6.0 23 125-147 124-146 (195)
269 PF01885 PTS_2-RNA: RNA 2'-pho 22.1 1.8E+02 0.0039 20.6 3.9 36 57-92 26-61 (186)
270 PF02337 Gag_p10: Retroviral G 21.6 2E+02 0.0044 17.7 3.6 11 168-178 69-79 (90)
271 PRK00819 RNA 2'-phosphotransfe 21.5 2.4E+02 0.0053 19.9 4.4 43 58-103 28-70 (179)
272 PF01316 Arg_repressor: Argini 20.4 2E+02 0.0042 16.8 3.8 31 136-166 19-49 (70)
273 cd07177 terB_like tellurium re 20.4 2.1E+02 0.0046 17.1 5.1 17 60-76 12-28 (104)
274 cd01671 CARD Caspase activatio 20.3 1.9E+02 0.0042 16.7 3.8 45 135-184 26-70 (80)
275 PF12238 MSA-2c: Merozoite sur 20.3 3.5E+02 0.0076 19.7 5.4 31 119-149 83-114 (205)
276 cd08313 Death_TNFR1 Death doma 20.2 1.8E+02 0.004 17.4 3.1 14 172-185 57-70 (80)
277 PF01846 FF: FF domain; Inter 20.2 1.5E+02 0.0033 15.5 2.8 13 174-186 20-32 (51)
278 PF13624 SurA_N_3: SurA N-term 20.0 1.4E+02 0.003 19.9 3.0 44 141-184 88-132 (154)
279 PF09851 SHOCT: Short C-termin 20.0 1.2E+02 0.0027 14.3 4.1 23 45-73 4-26 (31)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=2.8e-28 Score=163.94 Aligned_cols=152 Identities=39% Similarity=0.701 Sum_probs=144.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhc
Q psy13257 35 SGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMA 114 (188)
Q Consensus 35 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 114 (188)
......+++++++++++.|..+|++++|.|+..+|..+++.+|..++..++.+++..++. +.+.|+|.+|+.++.....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 445578999999999999999999999999999999999999999999999999999998 8999999999999999888
Q ss_pred CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC
Q psy13257 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSL 187 (188)
Q Consensus 115 ~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~ 187 (188)
.....+.++.+|+.||.+++|+|+..+++.++..+|..+++++++.+++.++.+++|.|+|++|+..+...|.
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~~ 159 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPT 159 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccCC
Confidence 8888999999999999999999999999999999999999999999999999999999999999998877653
No 2
>KOG0027|consensus
Probab=99.95 E-value=5.4e-26 Score=155.40 Aligned_cols=145 Identities=44% Similarity=0.772 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcch--
Q psy13257 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDS-- 118 (188)
Q Consensus 41 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~-- 118 (188)
++.+++..+..+|..+|++++|.|+..+|..+++.+|..++..++..++..+|.+++|.|++++|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 567889999999999999999999999999999999999999999999999999999999999999999876544433
Q ss_pred --HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 119 --KEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 119 --~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.+.++.+|+.||.+++|+|+..||+.+|..+|..++.++++.+++..|.|++|.|+|++|+.++...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 4589999999999999999999999999999999999999999999999999999999999998753
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=9.5e-25 Score=150.49 Aligned_cols=152 Identities=61% Similarity=1.014 Sum_probs=140.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCc
Q psy13257 37 PKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADK 116 (188)
Q Consensus 37 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 116 (188)
....+++.++..+..+|..+|.+++|.|+..||..++..+|..++...+..++..+|.+++|.|+|.+|+.++.......
T Consensus 7 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 7 ERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 34679999999999999999999999999999999999998888999999999999999999999999999887654455
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSLY 188 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~ 188 (188)
...+.+..+|+.+|.+++|.|+.+||..++...|..+++.++..++..++.+++|.|++++|..++...|.+
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 158 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNLF 158 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccCC
Confidence 566789999999999999999999999999999999999999999999999999999999999999998875
No 4
>KOG0028|consensus
Probab=99.93 E-value=2.6e-24 Score=141.75 Aligned_cols=155 Identities=62% Similarity=0.966 Sum_probs=147.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 32 KKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
..+..+...+++++.+.+...|..+|.+++|.|..+||..++.++|..+...++..++..+|.++.|.|+|++|...+..
T Consensus 18 ~~~~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 18 AKPASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred hccCCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q psy13257 112 KMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186 (188)
Q Consensus 112 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~ 186 (188)
.....+..+.+..+|+.+|-|++|.|+..+|+.+...+|+.++++++.++++.+|.+++|.|+-++|..+|++.+
T Consensus 98 k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t~ 172 (172)
T KOG0028|consen 98 KLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKTS 172 (172)
T ss_pred HHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcCC
Confidence 887888999999999999999999999999999999999999999999999999999999999999999998764
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=3.5e-23 Score=141.23 Aligned_cols=145 Identities=52% Similarity=0.853 Sum_probs=134.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcch
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDS 118 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 118 (188)
..+++++++.+...|..+|.+++|.|+..+|..++..++..+..+.+..+++.++.+++|.|+|++|+.++.........
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 46788999999999999999999999999999999999888889999999999999999999999999998766544456
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
.+.+..+|+.+|.+++|.|+.++|..++...|..++..++..+++.+|.+++|.|+|++|+.++.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 67889999999999999999999999999999889999999999999999999999999998875
No 6
>KOG0031|consensus
Probab=99.90 E-value=1.1e-21 Score=128.52 Aligned_cols=146 Identities=31% Similarity=0.533 Sum_probs=137.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhc
Q psy13257 35 SGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMA 114 (188)
Q Consensus 35 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 114 (188)
......+++.+|.++.+.|..+|.|++|.|..++|...+.++|...+++++..++... .|.|+|.-|+.++...+.
T Consensus 20 SnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~ 95 (171)
T KOG0031|consen 20 SNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLN 95 (171)
T ss_pred chHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhc
Confidence 4456689999999999999999999999999999999999999999999999999764 689999999999998887
Q ss_pred CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 115 ~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.-+.++.+..+|+.||.+++|.|..+.++.+|...|..+++++++.+++.+-.+..|.|+|..|+..+.+
T Consensus 96 gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 96 GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 8888999999999999999999999999999999999999999999999999999999999999998874
No 7
>KOG0030|consensus
Probab=99.87 E-value=8.2e-21 Score=122.42 Aligned_cols=144 Identities=33% Similarity=0.620 Sum_probs=129.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHhhc--
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKD--NSGLLTYKDFLHLVTQKMA-- 114 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~ef~~~~~~~~~-- 114 (188)
..++++...+++++|..||..++|.|+..+...+|+.+|..++..++.+.+...+.+ +-.+++|++|+-++....+
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 356677789999999999999999999999999999999999999999999888766 4588999999999887654
Q ss_pred CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 115 ~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
.+...+.+.+-++.||++++|+|...|++.+|..+|..+++++++.+++.. .|.+|.|+|++|+..+.
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 345688899999999999999999999999999999999999999999886 78899999999997654
No 8
>KOG0037|consensus
Probab=99.87 E-value=4.3e-20 Score=128.23 Aligned_cols=133 Identities=26% Similarity=0.391 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHH
Q psy13257 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALG-FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEIL 123 (188)
Q Consensus 45 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 123 (188)
.-..+...|...|++..|.|+.+|+..+|.... -..+.+.++.++..+|.+.+|.|+++||..+|.... .|+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QWR 127 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HHH
Confidence 445788999999999999999999999998654 467889999999999999999999999999998876 999
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 124 ~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.+|+.+|.|++|+|+..||+++|..+|..+++...+.|++.+|...+|.|.+++|++++..
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888999999999988754
No 9
>KOG0034|consensus
Probab=99.86 E-value=6.7e-20 Score=127.53 Aligned_cols=145 Identities=26% Similarity=0.462 Sum_probs=123.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHhhcCc
Q psy13257 39 FELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL-LTYKDFLHLVTQKMADK 116 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~-i~~~ef~~~~~~~~~~~ 116 (188)
..++..++.+|...|.++|.+ ++|.++.+||..+..... . .-..+++..++.+++|. |+|++|+..+.......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~-N---p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELAL-N---PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhc-C---cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 568899999999999999999 999999999999984432 2 23577888888888888 99999999999988666
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh-CCCCC--HH----HHHHHHHhhCCCCCCcccHHHHHHHHHhcCC
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVEL-GENIA--DE----EIQEMINEADKDGDGEINEEEFLHIMKKTSL 187 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~-~~~~~--~~----~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~ 187 (188)
...++++.+|+.||.+++|+|+++|+.+++..+ +...+ ++ .++.++..+|.++||+|+++||+.++.+.|.
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 666799999999999999999999999999976 33444 33 3566788999999999999999999998864
No 10
>KOG0044|consensus
Probab=99.78 E-value=1.9e-17 Score=115.41 Aligned_cols=146 Identities=17% Similarity=0.342 Sum_probs=120.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCc
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGF-EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADK 116 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 116 (188)
...+++.+++.+.+-|.. .-.+|.|+.++|..++..+.- .-+..-+..+++.+|.+++|.|+|.||+..+.... ..
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rG 96 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS-RG 96 (193)
T ss_pred hcCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CC
Confidence 456777777777776664 234899999999999998753 44566679999999999999999999999998765 67
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVEL----GE-------NIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~----~~-------~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
..++.++.+|+.||.+++|+|+++|+-.+++.. |. .-.+..++.+|+.+|.|.||.||++||.....+.
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 788899999999999999999999998888764 32 1135667899999999999999999999887765
Q ss_pred C
Q psy13257 186 S 186 (188)
Q Consensus 186 ~ 186 (188)
|
T Consensus 177 ~ 177 (193)
T KOG0044|consen 177 P 177 (193)
T ss_pred H
Confidence 4
No 11
>KOG0036|consensus
Probab=99.77 E-value=3.7e-17 Score=123.12 Aligned_cols=142 Identities=23% Similarity=0.397 Sum_probs=130.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcc
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFE-PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKD 117 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 117 (188)
.+..++.-.+++.+|..+|.+++|.++..++...+..+... +..+....++..+|.+.+|.|+|+||..++...
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~----- 80 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK----- 80 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----
Confidence 35556666889999999999999999999999999998877 778888999999999999999999999999763
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~ 186 (188)
+..+.++|..+|.+.+|.|..+|+.+.|+.+|..++++++..+++.+|+++++.|+++||.+++.-.|
T Consensus 81 -E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 81 -ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred -HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 55899999999999999999999999999999999999999999999999999999999999887655
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.49 E-value=1.1e-12 Score=106.55 Aligned_cols=105 Identities=15% Similarity=0.332 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHHhhc
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALG-FEPKKEE---IKKMISEISKDNSGLLTYKDFLHLVTQKMA 114 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 114 (188)
..++..++.++.+.|..+|++++|.+ +..++..+| ..++..+ ++.++..+|.+++|.|+|+||+.++....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg- 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG- 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-
Confidence 57888899999999999999999996 888899999 5778776 79999999999999999999999998643
Q ss_pred CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy13257 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE 148 (188)
Q Consensus 115 ~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~ 148 (188)
.....+.+..+|+.+|.+++|+|+.+||..++..
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 4556778999999999999999999999999988
No 13
>KOG4223|consensus
Probab=99.49 E-value=2.9e-13 Score=99.58 Aligned_cols=146 Identities=23% Similarity=0.350 Sum_probs=117.7
Q ss_pred CCCHH-HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcC---
Q psy13257 40 ELTPE-QVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMAD--- 115 (188)
Q Consensus 40 ~~~~~-~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~--- 115 (188)
.++++ ...++..++.++|.+++|.|+..|+..++..........++.+-+..++.+.+|.|+|+++...+......
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~ 148 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDE 148 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccc
Confidence 34443 34889999999999999999999999998776566677788888999999999999999999876532100
Q ss_pred ----------cchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 116 ----------KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG-ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 116 ----------~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
......-.+-|+.-|.|++|.++++||..+|..-. ..+.+-.+..-+...|+|+||.|+++||+.-|..
T Consensus 149 ~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 149 FPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred cccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 01122346679999999999999999999998543 5677888899999999999999999999987755
Q ss_pred c
Q psy13257 185 T 185 (188)
Q Consensus 185 ~ 185 (188)
.
T Consensus 229 ~ 229 (325)
T KOG4223|consen 229 H 229 (325)
T ss_pred c
Confidence 4
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=7.9e-13 Score=77.59 Aligned_cols=62 Identities=42% Similarity=0.710 Sum_probs=54.7
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 121 EILKAFRLFDEDNTGKISFANLRSVAVELGENIAD----EEIQEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~----~~~~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
+++.+|+.+|.+++|+|+.+||..++..++...++ ..+..+++.+|.|++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999999876655 445556999999999999999999875
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=6.9e-13 Score=81.83 Aligned_cols=66 Identities=17% Similarity=0.341 Sum_probs=61.1
Q ss_pred HHHHHHHHhhCC-CCCCceeHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 120 EEILKAFRLFDE-DNTGKISFANLRSVAVE-LGENIAD-EEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 120 ~~~~~~f~~~D~-~~~g~I~~eef~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
..++.+|+.||. +++|+|+..||+.++.. +|..++. .+++.+++.+|.|+||.|+|+||+.++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 368899999999 99999999999999998 8888888 999999999999999999999999988653
No 16
>KOG0038|consensus
Probab=99.40 E-value=1.3e-11 Score=80.74 Aligned_cols=146 Identities=23% Similarity=0.366 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCC-----C------CccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13257 39 FELTPEQVADIQEAFALFDKEG-----T------GSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~-----~------g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 107 (188)
.-++.++|-++..-|..+.++- . -.++.+.+..+ ..+.-++- -+++...+..++.|.++|+.|+.
T Consensus 20 TFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELkenpf---k~ri~e~FSeDG~GnlsfddFlD 95 (189)
T KOG0038|consen 20 TFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKENPF---KRRICEVFSEDGRGNLSFDDFLD 95 (189)
T ss_pred ccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcChH---HHHHHHHhccCCCCcccHHHHHH
Confidence 4578888888888888876642 1 13333333222 22222222 35667777889999999999999
Q ss_pred HHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC-CCCCHHHH----HHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 108 LVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG-ENIADEEI----QEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-~~~~~~~~----~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
++..........=++..+|+.||-+++++|-.+++...+.++- ..++++++ +.+++..|.|+||++++.||..++
T Consensus 96 mfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 96 MFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 9887654444444778899999999999999999999998774 56777765 556778899999999999999999
Q ss_pred HhcCCC
Q psy13257 183 KKTSLY 188 (188)
Q Consensus 183 ~~~~~~ 188 (188)
.+.|.|
T Consensus 176 ~raPDF 181 (189)
T KOG0038|consen 176 LRAPDF 181 (189)
T ss_pred HhCcch
Confidence 999865
No 17
>KOG0027|consensus
Probab=99.38 E-value=1.2e-11 Score=84.48 Aligned_cols=103 Identities=25% Similarity=0.411 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCC-----CHH
Q psy13257 82 KEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENI-----ADE 156 (188)
Q Consensus 82 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~-----~~~ 156 (188)
..++...|..+|.+++|.|+-.|+..++.... .......+..++..+|.+++|.|+.++|..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 35678999999999999999999999998765 446788999999999999999999999999999765432 345
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 157 EIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 157 ~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
++..+|+.+|.|++|.|+..++..+|...
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 99999999999999999999999999864
No 18
>KOG4223|consensus
Probab=99.36 E-value=6.6e-12 Score=92.54 Aligned_cols=136 Identities=24% Similarity=0.398 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHH---
Q psy13257 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALGFE-PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKE--- 120 (188)
Q Consensus 45 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~--- 120 (188)
-+.+-++.|...|.|++|.+|.+||..+|.--..+ +..-.+...+...|.+++|.|+++||+.-+..........+
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 34566889999999999999999999988543222 22334577888889999999999999997765543222111
Q ss_pred -HHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13257 121 -EILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLH 180 (188)
Q Consensus 121 -~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 180 (188)
.-.+.+..+|.+++|+++.+|+...+...+......+...|+...|.|+||++|++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 234678889999999999999998877666667789999999999999999999999764
No 19
>KOG0037|consensus
Probab=99.34 E-value=2.1e-11 Score=85.31 Aligned_cols=126 Identities=21% Similarity=0.367 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchH
Q psy13257 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSK 119 (188)
Q Consensus 40 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 119 (188)
.++.+. ++.+...+|.+++|.|.+.||..+.+.+ ..-+.+|+.+|.|+.|.|+..|+...+...- ..-..
T Consensus 90 ~Fs~~T---crlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Lsp 159 (221)
T KOG0037|consen 90 PFSIET---CRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALTQLG-YRLSP 159 (221)
T ss_pred CCCHHH---HHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHHHcC-cCCCH
Confidence 444444 4444445667777888888887777665 2345777777888888888888777776543 33345
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCc--ccHHHHHHH
Q psy13257 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGE--INEEEFLHI 181 (188)
Q Consensus 120 ~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~--i~~~eF~~~ 181 (188)
+.+..+++.||..++|.|..++|.++|..+. .+-.+|+..|.+.+|. |+|++|+.+
T Consensus 160 q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~------~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 160 QFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ------RLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHHHHHHHHhccccCCceeHHHHHHHHHHHH------HHHHHHHHhccccceeEEEeHHHHHHH
Confidence 5667777778777777888888777766554 2455677777766664 577777754
No 20
>KOG0377|consensus
Probab=99.34 E-value=4.3e-11 Score=91.60 Aligned_cols=136 Identities=24% Similarity=0.448 Sum_probs=106.9
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcc--------
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMRA-LGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKD-------- 117 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~-------- 117 (188)
..+.+-|+.+|..++|.++...+..++.. +++.++...++--+.. ...+|.|.|.+....+.....-..
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~--~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLAN--GSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccC--CCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 45688999999999999999999999976 4677766555443333 345789999998887654221110
Q ss_pred ---hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 118 ---SKEEILKAFRLFDEDNTGKISFANLRSVAVELG----ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 118 ---~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
....+..+|+.+|.|++|.|+.+||+.++.-++ ..++++++..+.+.+|.|+||.|++.||+..++-
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 122467789999999999999999999887554 5678999999999999999999999999988763
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.33 E-value=1.3e-11 Score=76.27 Aligned_cols=64 Identities=22% Similarity=0.461 Sum_probs=59.6
Q ss_pred HHHHHHHhhC-CCCCC-ceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 121 EILKAFRLFD-EDNTG-KISFANLRSVAVE-----LGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 121 ~~~~~f~~~D-~~~~g-~I~~eef~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.++.+|+.|| .+++| .|+.+||+.+|+. .|...++.+++.+++.+|.|++|+|+|++|+.++..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 6889999998 79999 6999999999999 888889999999999999999999999999988764
No 22
>KOG0044|consensus
Probab=99.31 E-value=1e-10 Score=81.87 Aligned_cols=121 Identities=24% Similarity=0.369 Sum_probs=100.6
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC-CCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHH
Q psy13257 63 SISTKELKIAMRALGFEPKKEEIKKMISEISKDN-SGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFAN 141 (188)
Q Consensus 63 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~ee 141 (188)
.++...+..+... -..+..++..+++.+-.+. .|.++-++|..++.......+.......+|+.+|.+++|+|+.+|
T Consensus 8 ~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~E 85 (193)
T KOG0044|consen 8 KLQPESLEQLVQQ--TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLE 85 (193)
T ss_pred cCCcHHHHHHHHh--cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHH
Confidence 3444444444433 2467888999998886664 899999999999998876677788899999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 142 LRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 142 f~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
|...+......-.++.++..|+.+|.|++|.|+++|++.+++..
T Consensus 86 fi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 86 FICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 99988877767778889999999999999999999999988754
No 23
>PTZ00183 centrin; Provisional
Probab=99.31 E-value=1.2e-10 Score=80.06 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=86.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh-CCCCCHHHHHHH
Q psy13257 83 EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL-GENIADEEIQEM 161 (188)
Q Consensus 83 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~-~~~~~~~~~~~l 161 (188)
.++..+|..+|.+++|.|++++|..++.... .......+..+|..+|.+++|.|+.++|..++... ....+...++.+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4567788999999999999999999987543 23345679999999999999999999999987653 345577889999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 162 INEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 162 ~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
|+.+|.+++|.|+..+|..++...
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 999999999999999999998753
No 24
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.30 E-value=2.5e-11 Score=74.87 Aligned_cols=70 Identities=14% Similarity=0.307 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhcC-CCCCccCHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 44 EQVADIQEAFALFDK-EGTGSISTKELKIAMRA-LGFEPKK-EEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 44 ~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
.-+..+..+|..+|+ +++|.|+..||+.++.. ++..++. ++++.+++.+|.+++|.|+|+||+.++....
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 456889999999999 99999999999999988 8877777 8999999999999999999999999887653
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.27 E-value=2.7e-11 Score=71.00 Aligned_cols=62 Identities=35% Similarity=0.692 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHH----HHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKE----EIKKMISEISKDNSGLLTYKDFLHLV 109 (188)
Q Consensus 48 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~l~~~~d~~~~~~i~~~ef~~~~ 109 (188)
+|..+|..+|.+++|.|+.+||..++..++...+.. .+..+++.+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999887665443 34445777777777777777777653
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.27 E-value=4.3e-11 Score=73.92 Aligned_cols=65 Identities=18% Similarity=0.463 Sum_probs=58.7
Q ss_pred HHHHHHHhhCC-CC-CCceeHHHHHHHHHH---hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 121 EILKAFRLFDE-DN-TGKISFANLRSVAVE---LGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 121 ~~~~~f~~~D~-~~-~g~I~~eef~~~l~~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.+..+|..||. ++ +|+|+.+||+.++.. +|..++++++..+++.+|.|++|+|+|+||+.++...
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 57788999998 67 899999999999973 6888999999999999999999999999999988653
No 27
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.27 E-value=2.2e-10 Score=77.59 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=88.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHH
Q psy13257 83 EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG-ENIADEEIQEM 161 (188)
Q Consensus 83 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-~~~~~~~~~~l 161 (188)
+++++.|..+|.+++|.|++.++..+++. .........+..+|..+|. ++|.|+..+|..+|...- ..-+++++...
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34566788889999999999999999984 4466778899999999999 999999999999998654 45578999999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 162 INEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 162 ~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
|+.+|.|++|+|+..+++.++...
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHHhh
Confidence 999999999999999999988743
No 28
>PTZ00184 calmodulin; Provisional
Probab=99.26 E-value=2.4e-10 Score=77.61 Aligned_cols=102 Identities=25% Similarity=0.406 Sum_probs=85.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHH
Q psy13257 83 EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG-ENIADEEIQEM 161 (188)
Q Consensus 83 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-~~~~~~~~~~l 161 (188)
+.+...|..+|.+++|.|++++|..++.... .....+.+..+|+.+|.+++|.|+.++|..++.... .......+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3456788889999999999999999886543 334467899999999999999999999999988643 34456778999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 162 INEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 162 ~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
|..+|.+++|.|+.++|..++...
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHH
Confidence 999999999999999999888653
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.24 E-value=3.7e-11 Score=75.46 Aligned_cols=68 Identities=21% Similarity=0.420 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhCC-CC-CCceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q psy13257 119 KEEILKAFRLFDE-DN-TGKISFANLRSVAVE-----LGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186 (188)
Q Consensus 119 ~~~~~~~f~~~D~-~~-~g~I~~eef~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~ 186 (188)
...+..+|..+|. ++ +|.|+..|++.+++. +|...++.+++.+++.+|.+++|.|+|++|+.++...+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3468899999997 87 799999999999986 46678999999999999999999999999999887654
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.23 E-value=7e-11 Score=66.35 Aligned_cols=52 Identities=35% Similarity=0.669 Sum_probs=48.9
Q ss_pred CCCceeHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 133 NTGKISFANLRSVAVELGEN-IADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 133 ~~g~I~~eef~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.+|.|+.++|..+|..+|.. +++.+++.|+..+|.+++|.|+|+||+.+|.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888988 99999999999999999999999999999864
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.22 E-value=2e-10 Score=70.90 Aligned_cols=69 Identities=19% Similarity=0.412 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 44 EQVADIQEAFALFD-KEGTG-SISTKELKIAMRA-----LGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 44 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
.-+..+.++|..+| .+++| .|+..||+.+|.. ++...+.+++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35688999999998 79999 5999999999998 8888899999999999999999999999999987654
No 32
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.21 E-value=1.2e-10 Score=72.80 Aligned_cols=65 Identities=17% Similarity=0.392 Sum_probs=56.1
Q ss_pred HHHHHHHhhC-CCCCC-ceeHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 121 EILKAFRLFD-EDNTG-KISFANLRSVAVE-L----GENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 121 ~~~~~f~~~D-~~~~g-~I~~eef~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.+..+|..|| .+++| +|+.+||+.++.. . ....++.+++.+++.+|.|++|.|+|+||+.++...
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 5778899999 78998 5999999999976 3 334478899999999999999999999999988653
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.20 E-value=1.5e-10 Score=72.36 Aligned_cols=67 Identities=21% Similarity=0.483 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhC-CCCCC-ceeHHHHHHHHHH-hCC----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 119 KEEILKAFRLFD-EDNTG-KISFANLRSVAVE-LGE----NIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 119 ~~~~~~~f~~~D-~~~~g-~I~~eef~~~l~~-~~~----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.+.++++|..|| .+++| .|+..||+.+|+. +|. ..++.+++.+++.+|.+++|.|+|++|+.++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 457899999997 99999 5999999999985 543 4588999999999999999999999999988754
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.19 E-value=3.3e-10 Score=71.43 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
..++.+++..+..+|..+|.+++|.|+..++..++..++ ++.+++..++..++.+++|.|+|+||+.++...
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 457889999999999999999999999999999998865 678899999999999999999999999987654
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.18 E-value=1.1e-10 Score=68.42 Aligned_cols=61 Identities=30% Similarity=0.417 Sum_probs=55.9
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 123 LKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 123 ~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
+.+|..+|.+++|.|+.+|+..++...| ++.++++.++..++.+++|.|++++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999999876 488899999999999999999999999988654
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.17 E-value=2.8e-10 Score=71.73 Aligned_cols=66 Identities=26% Similarity=0.468 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
....+..+|..+|.+++|.|+.+++..+++..+ +++.++..++..+|.+.+|.|++++|+.++...
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 455789999999999999999999999999865 788999999999999999999999999988654
No 37
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.14 E-value=8e-10 Score=68.24 Aligned_cols=71 Identities=17% Similarity=0.429 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhcC-CC-CCccCHHHHHHHHH---HcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 43 PEQVADIQEAFALFDK-EG-TGSISTKELKIAMR---ALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 43 ~~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
++.+..|..+|.++|. ++ +|.|+..||..++. .+|..++.+++..+++.+|.+++|.|+|+||+.++....
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3466889999999998 66 89999999999996 368889999999999999999999999999998887643
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.13 E-value=3.6e-10 Score=70.09 Aligned_cols=66 Identities=21% Similarity=0.441 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhCC--CCCCceeHHHHHHHHHH-hCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 119 KEEILKAFRLFDE--DNTGKISFANLRSVAVE-LGENI----ADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 119 ~~~~~~~f~~~D~--~~~g~I~~eef~~~l~~-~~~~~----~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.+.++.+|..+|. +++|.|+.++|..+++. +|..+ +..+++.++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3468889999999 89999999999999986 55433 5899999999999999999999999998865
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=99.10 E-value=1.9e-09 Score=88.16 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=89.8
Q ss_pred CccCHHHHHHHHHH--c-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh-cCcchHH--HHHHHHHhhCCCCCC
Q psy13257 62 GSISTKELKIAMRA--L-GFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM-ADKDSKE--EILKAFRLFDEDNTG 135 (188)
Q Consensus 62 g~i~~~e~~~~l~~--~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~g 135 (188)
..++.+++...... . ......+++.+.|..+|.+++|.+ +.. ++...- ......+ .+..+|+.+|.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~---ilrslG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGS---IFVSCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHH---HHHHhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 35666666544322 1 111123556778999999999997 333 333322 1233333 389999999999999
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 136 KISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 136 ~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||..+|...
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 99999999999998887899999999999999999999999999998773
No 40
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.10 E-value=7.8e-10 Score=63.39 Aligned_cols=61 Identities=54% Similarity=0.891 Sum_probs=57.2
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 122 ILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 122 ~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
+..+|..+|.+++|.|+.++|..+++..+...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988999999999999999999999999999876
No 41
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=1e-09 Score=67.91 Aligned_cols=66 Identities=18% Similarity=0.335 Sum_probs=56.5
Q ss_pred HHHHHHHHh-hCCCCCC-ceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 120 EEILKAFRL-FDEDNTG-KISFANLRSVAVEL-----GENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 120 ~~~~~~f~~-~D~~~~g-~I~~eef~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
..+..+|+. .|.+++| +|+.+||+.++... +....+.+++.+++.+|.|+||.|+|+||+.++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467888999 6788876 99999999999975 334567899999999999999999999999988653
No 42
>KOG2562|consensus
Probab=99.09 E-value=1.6e-09 Score=83.49 Aligned_cols=130 Identities=21% Similarity=0.335 Sum_probs=103.5
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHHHhhcCcchHHHH
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISE----ISKDNSGLLTYKDFLHLVTQKMADKDSKEEI 122 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~----~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 122 (188)
..+.-.|..+|++++|.|+.++++..-... .+.-.++++|.. .-...+|+++|++|+.++.... .+.....+
T Consensus 278 ~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~k~t~~Sl 353 (493)
T KOG2562|consen 278 YVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-DKDTPASL 353 (493)
T ss_pred HHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-cCCCccch
Confidence 344555888999999999999998765443 456667888882 2334689999999999998755 66677789
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHh-------C-CCC-CHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13257 123 LKAFRLFDEDNTGKISFANLRSVAVEL-------G-ENI-ADEEIQEMINEADKDGDGEINEEEFLH 180 (188)
Q Consensus 123 ~~~f~~~D~~~~g~I~~eef~~~l~~~-------~-~~~-~~~~~~~l~~~~d~~~~g~i~~~eF~~ 180 (188)
..+|+.+|.+++|.|+..|++-+.+.. + ..+ -++.+++|+..+.....++|+.++|..
T Consensus 354 eYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 354 EYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred hhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999999999998877642 2 223 367788999999888899999999986
No 43
>KOG0034|consensus
Probab=99.07 E-value=3e-09 Score=74.45 Aligned_cols=111 Identities=21% Similarity=0.358 Sum_probs=90.4
Q ss_pred CCCCHHHHHHH---------HHHHHhhcCCCCCc-cCHHHHHHHHHHcCCCCCHH-HHHHHHHhhCCCCCCcccHHHHHH
Q psy13257 39 FELTPEQVADI---------QEAFALFDKEGTGS-ISTKELKIAMRALGFEPKKE-EIKKMISEISKDNSGLLTYKDFLH 107 (188)
Q Consensus 39 ~~~~~~~~~~l---------~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~~~i~~~ef~~ 107 (188)
..++.++...+ .+++..++.+++|. |++.+|...+..+....... .++..++.+|.+++|.|+.+|+..
T Consensus 49 g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~ 128 (187)
T KOG0034|consen 49 GYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQ 128 (187)
T ss_pred CccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 34566666554 77888889998888 99999999998875555544 788999999999999999999999
Q ss_pred HHHHhhcCcch------HHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q psy13257 108 LVTQKMADKDS------KEEILKAFRLFDEDNTGKISFANLRSVAVEL 149 (188)
Q Consensus 108 ~~~~~~~~~~~------~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~ 149 (188)
++......... .+.+...|..+|.+++|.|+.+||+.++...
T Consensus 129 iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 129 ILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 99887654333 3346678999999999999999999998753
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.07 E-value=2.4e-09 Score=66.97 Aligned_cols=70 Identities=19% Similarity=0.367 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-c----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 44 EQVADIQEAFALFD-KEGTG-SISTKELKIAMRA-L----GFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 44 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
.-+..+.++|..+| .+++| .|+..||..++.. + ....+..++..+++.+|.+++|.|+|+||+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34588899999999 78998 5999999999966 2 3345778999999999999999999999999887653
No 45
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.06 E-value=1.7e-09 Score=67.07 Aligned_cols=70 Identities=20% Similarity=0.406 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhcC--CCCCccCHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 43 PEQVADIQEAFALFDK--EGTGSISTKELKIAMRA-LGFE----PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 43 ~~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
++++..+..+|..+|. +++|.|+..+|..++.. ++.. .+.+++..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678899999999999 89999999999999975 4543 358999999999999999999999999988764
No 46
>KOG0028|consensus
Probab=99.05 E-value=7.3e-09 Score=69.15 Aligned_cols=102 Identities=28% Similarity=0.424 Sum_probs=87.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHH-HhCCCCCHHHHHHH
Q psy13257 83 EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAV-ELGENIADEEIQEM 161 (188)
Q Consensus 83 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~-~~~~~~~~~~~~~l 161 (188)
++++..|..++.+++|.|++.|+...+...- .....+.+..+...+|.+++|.|+.++|.+.+. .++..-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 5678888899999999999999966665543 333466889999999999999999999999876 56776799999999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 162 INEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 162 ~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
|+.+|.+.+|.||..+|+.+.+..
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHh
Confidence 999999999999999999887754
No 47
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.04 E-value=3.6e-09 Score=66.11 Aligned_cols=68 Identities=24% Similarity=0.473 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-c----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 45 QVADIQEAFALFD-KEGTG-SISTKELKIAMRA-L----GFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 45 ~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
-+..+.++|..+| .+++| .|+..||..+|.. + +..++.++++.+++.+|.+++|.|+|++|+.++...
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3478999999997 99999 5999999999975 4 335688999999999999999999999999988754
No 48
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.03 E-value=3.2e-09 Score=66.59 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcC-CC-CCccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 45 QVADIQEAFALFDK-EG-TGSISTKELKIAMRA-----LGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 45 ~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
....+..+|..+|. ++ +|.|+..||..++.. ++..++.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35778999999997 87 699999999999876 566788999999999999999999999999988764
No 49
>PF14658 EF-hand_9: EF-hand domain
Probab=99.02 E-value=2.3e-09 Score=61.36 Aligned_cols=61 Identities=33% Similarity=0.612 Sum_probs=57.2
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHh
Q psy13257 124 KAFRLFDEDNTGKISFANLRSVAVELGE-NIADEEIQEMINEADKDGD-GEINEEEFLHIMKK 184 (188)
Q Consensus 124 ~~f~~~D~~~~g~I~~eef~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~eF~~~l~~ 184 (188)
.+|..+|+++.|.|...++..+|++.+. ..++.+++.+.+.+|.++. |.|++++|+..|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999987 7889999999999999998 99999999999985
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.00 E-value=2.1e-09 Score=60.25 Aligned_cols=52 Identities=23% Similarity=0.622 Sum_probs=47.4
Q ss_pred CCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 60 GTGSISTKELKIAMRALGFE-PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
++|.|+.++|..++..+|.. ++.+++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47899999999999888988 99999999999999999999999999998754
No 51
>KOG0040|consensus
Probab=98.98 E-value=1.9e-08 Score=86.87 Aligned_cols=138 Identities=21% Similarity=0.399 Sum_probs=109.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCC-------CHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEP-------KKEEIKKMISEISKDNSGLLTYKDFLHLVT 110 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 110 (188)
..+++++.+.++.-+|..||++++|.++..+|..||+++|-.+ ++.++..++..+|++.+|.|+..+|+.++.
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 4589999999999999999999999999999999999998765 244799999999999999999999999887
Q ss_pred Hhhc-CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHH----hhCCC----CCCcccHHHHHHH
Q psy13257 111 QKMA-DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMIN----EADKD----GDGEINEEEFLHI 181 (188)
Q Consensus 111 ~~~~-~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~----~~d~~----~~g~i~~~eF~~~ 181 (188)
..-. +....+.|..+|+.+|. +..+|+.+++-+- +|+++..-++. ..+.. ..+.+.|.+|+..
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~s 2395 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNS 2395 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHH
Confidence 5432 33345589999999999 8889999887552 44444443333 33332 2346899999876
Q ss_pred HH
Q psy13257 182 MK 183 (188)
Q Consensus 182 l~ 183 (188)
|-
T Consensus 2396 l~ 2397 (2399)
T KOG0040|consen 2396 LF 2397 (2399)
T ss_pred Hh
Confidence 63
No 52
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.98 E-value=3.5e-09 Score=68.52 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
....+..+|..+|.+++|.|+.+|+..+. ....+..+..++..+|.|+||.||++||+.++.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 34578889999999999999999999876 2244677889999999999999999999999844
No 53
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.98 E-value=4.1e-09 Score=61.73 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=54.5
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 50 QEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 50 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
+++|..+|.+++|.|+..|+..++..++. +..++..++..++.+++|.|+|+||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999988764 78889999999999999999999999887653
No 54
>KOG2643|consensus
Probab=98.96 E-value=9.7e-09 Score=78.79 Aligned_cols=131 Identities=19% Similarity=0.317 Sum_probs=96.0
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCH---HHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHH
Q psy13257 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILK 124 (188)
Q Consensus 48 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~---~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 124 (188)
-+..-|..+|+..+|.|+..+|+.+|.......++ ..++++-+.++.. +..|+++||..++.-.. ....-+....
T Consensus 319 il~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~-~l~dfd~Al~ 396 (489)
T KOG2643|consen 319 ILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLN-NLNDFDIALR 396 (489)
T ss_pred HHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHh-hhhHHHHHHH
Confidence 34556888899888999999998887665322221 2446666666554 66799999998886544 2222223333
Q ss_pred HHHhhCCCCCCceeHHHHHHHHH-HhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 125 AFRLFDEDNTGKISFANLRSVAV-ELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l~-~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
+|.. ..+.|+..+|+++.. ..|..+++..++.+|..+|.|+||.++++||+++|++
T Consensus 397 fy~~----Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 397 FYHM----AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHH----cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 3333 356799999998877 4578899889999999999999999999999999975
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.95 E-value=4.6e-09 Score=64.99 Aligned_cols=65 Identities=20% Similarity=0.423 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCC--CCCceeHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 121 EILKAFRLFDED--NTGKISFANLRSVAV-ELGENIA----DEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 121 ~~~~~f~~~D~~--~~g~I~~eef~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.+..+|..|+.. .+|.|+.+||+.++. .+|..++ +.+++.++..+|.+++|.|+|++|+.++...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567789999866 489999999999997 5566666 8999999999999999999999999988653
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.94 E-value=1.4e-08 Score=62.76 Aligned_cols=71 Identities=17% Similarity=0.332 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHh-hcCCCCC-ccCHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 43 PEQVADIQEAFAL-FDKEGTG-SISTKELKIAMRAL-----GFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 43 ~~~~~~l~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
+..+..|..+|.. +|.+++| .|+..||..++..- +......++..+++.+|.+++|.|+|+||+.++....
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3467889999999 6787865 99999999999764 3455678999999999999999999999999887653
No 57
>KOG0041|consensus
Probab=98.91 E-value=2.1e-08 Score=69.39 Aligned_cols=116 Identities=25% Similarity=0.373 Sum_probs=90.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy13257 29 APMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHL 108 (188)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 108 (188)
..+.+.+.....++.++|+.+..+|..+|.+.||+|+..|++.++..+|.+-+---+..++...|.|.+|+|+|.||+-+
T Consensus 81 ~kv~n~yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 81 LKVFNVYTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34445566677999999999999999999999999999999999999998877667899999999999999999999999
Q ss_pred HHHhhcCc-chHHHHHHHHHh--hCCCCCCceeHHHHHH
Q psy13257 109 VTQKMADK-DSKEEILKAFRL--FDEDNTGKISFANLRS 144 (188)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~f~~--~D~~~~g~I~~eef~~ 144 (188)
+....... ...+-+..+-+. .|...-|......|-.
T Consensus 161 frkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 161 FRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred HHHHhccccccchHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 98765321 122233333333 6777777666666543
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.91 E-value=1.2e-08 Score=58.24 Aligned_cols=61 Identities=48% Similarity=0.844 Sum_probs=53.7
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 49 IQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLV 109 (188)
Q Consensus 49 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 109 (188)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678888999999999999999999998888888889999999988889999999987654
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.84 E-value=3.1e-08 Score=64.16 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 42 TPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLV 109 (188)
Q Consensus 42 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 109 (188)
.+.....+.-.|..+|.|++|.|+..|+..+. .......+..++..+|.+++|.|+++||+..+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 55677888888888888888888888888765 33456667788888888888888888888877
No 60
>KOG2643|consensus
Probab=98.79 E-value=5.2e-08 Score=74.90 Aligned_cols=131 Identities=21% Similarity=0.369 Sum_probs=95.1
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHH------cCCC--------CC-HHHH--HHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMRA------LGFE--------PK-KEEI--KKMISEISKDNSGLLTYKDFLHLV 109 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~------~~~~--------~~-~~~~--~~l~~~~d~~~~~~i~~~ef~~~~ 109 (188)
..+...|..+|.|+||.|+.+||...... +|.. .+ .-++ ..+..-+..++++.+++++|..++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 34577899999999999999999776533 2221 00 0111 123344678899999999999999
Q ss_pred HHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCC---HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 110 TQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIA---DEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 110 ~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~---~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
..++ .+-++.-|..+|+..+|.|+..+|..++-.+...-+ .-.++.+-+.++.+ +..||++||.++.+
T Consensus 313 e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 313 ENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 8875 667777899999999999999999998886652222 22456677777665 56699999887653
No 61
>KOG4251|consensus
Probab=98.78 E-value=2.3e-08 Score=71.43 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-cC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHH-
Q psy13257 45 QVADIQEAFALFDKEGTGSISTKELKIAMRA-LG--FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKE- 120 (188)
Q Consensus 45 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~--~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~- 120 (188)
-.+.|+.+|.+.|.|.+|.|+..|+..++.. .. ..-..++....|+..|.+++|.|+|+||.--+.... ..+..+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlask-ghsekev 177 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASK-GHSEKEV 177 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhc-CcchHHH
Confidence 3478999999999999999999999887643 21 122345567788999999999999999987554322 111110
Q ss_pred -------------HHHHHHHhhCC---------CCCCceeHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCcccHHH
Q psy13257 121 -------------EILKAFRLFDE---------DNTGKISFANLRSVAVE-LGENIADEEIQEMINEADKDGDGEINEEE 177 (188)
Q Consensus 121 -------------~~~~~f~~~D~---------~~~g~I~~eef~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~e 177 (188)
.-.+.|..-++ ..+-.++.+||.-+|.. ....+-...++.|...+|.|+|.+++..+
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 11222222223 33445666899888873 33445567789999999999999999999
Q ss_pred HHHH
Q psy13257 178 FLHI 181 (188)
Q Consensus 178 F~~~ 181 (188)
|++.
T Consensus 258 Fisl 261 (362)
T KOG4251|consen 258 FISL 261 (362)
T ss_pred hhcC
Confidence 9864
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.75 E-value=9.2e-08 Score=59.14 Aligned_cols=69 Identities=22% Similarity=0.404 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhcCC--CCCccCHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 44 EQVADIQEAFALFDKE--GTGSISTKELKIAMR-ALGFEPK----KEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 44 ~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
+-+..+..+|.+++.. ++|.|+..||..++. .++..++ ..++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4568889999999876 478999999999996 5554455 8999999999999999999999999988654
No 63
>PF14658 EF-hand_9: EF-hand domain
Probab=98.71 E-value=9.8e-08 Score=54.71 Aligned_cols=60 Identities=27% Similarity=0.575 Sum_probs=55.1
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q psy13257 52 AFALFDKEGTGSISTKELKIAMRALGF-EPKKEEIKKMISEISKDNS-GLLTYKDFLHLVTQ 111 (188)
Q Consensus 52 ~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~~~~ 111 (188)
.|..+|.++.|.|...++..+|+.++. .+.+.+++.+.+.+|.++. |.|+++.|+.++..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 588899999999999999999999988 8999999999999999987 99999999988764
No 64
>KOG0041|consensus
Probab=98.70 E-value=1.3e-07 Score=65.48 Aligned_cols=78 Identities=29% Similarity=0.542 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy13257 102 YKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHI 181 (188)
Q Consensus 102 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 181 (188)
|.+|-.+-+.. -+.+..+|+.||.+.+|+|+..|++.++..+|.+.|---++.++...|.|.+|+|++-+|+-+
T Consensus 87 yteF~eFsrkq------Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 87 YTEFSEFSRKQ------IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred hhhhhHHHHHH------HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 55665444433 447788999999999999999999999999998888878899999999999999999999988
Q ss_pred HHhc
Q psy13257 182 MKKT 185 (188)
Q Consensus 182 l~~~ 185 (188)
+++.
T Consensus 161 frka 164 (244)
T KOG0041|consen 161 FRKA 164 (244)
T ss_pred HHHH
Confidence 8764
No 65
>KOG0036|consensus
Probab=98.69 E-value=3.7e-07 Score=69.86 Aligned_cols=99 Identities=16% Similarity=0.312 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHH
Q psy13257 82 KEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEM 161 (188)
Q Consensus 82 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l 161 (188)
+..++.+|..+|.+++|.++..+....+.....+....+....+|...|.+.+|.++.+||++.+.. .+.++-.+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 3456889999999999999999999888877656567888999999999999999999999999975 45678899
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 162 INEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 162 ~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
|+.+|.+.||.|...|....++..
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDL 111 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHh
Confidence 999999999999999999888764
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=5.1e-07 Score=55.46 Aligned_cols=63 Identities=11% Similarity=0.328 Sum_probs=52.7
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 121 EILKAFRLFDEDNTGKISFANLRSVAVE-L----GENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~eef~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.+..+|..|. .+.++++..||+.++.. + ...-.+..++.+++.+|.|+||.|+|+||+.++-.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5677899998 45679999999999974 2 23446888999999999999999999999988754
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.59 E-value=1.1e-06 Score=53.94 Aligned_cols=68 Identities=13% Similarity=0.310 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRA-----LGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 44 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
.-+..|..+|.++.. +.+.++..||+.++.. +........++.++..+|.++||.|+|.||+.++...
T Consensus 5 ~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 346778899999974 4679999999999844 3444567889999999999999999999999988765
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.59 E-value=5.6e-07 Score=57.11 Aligned_cols=64 Identities=30% Similarity=0.452 Sum_probs=56.1
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
.+...+..+|+.+|+ ++|.|+.++.+.++...+ ++.+.+..||...|.+++|.++++||+-.|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 356688899999996 589999999999999876 8889999999999999999999999997664
No 69
>KOG4666|consensus
Probab=98.58 E-value=8e-08 Score=71.28 Aligned_cols=125 Identities=12% Similarity=0.150 Sum_probs=97.8
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCcee
Q psy13257 59 EGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKIS 138 (188)
Q Consensus 59 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~ 138 (188)
.+.+.|-..||..-++ . +..+.+..+|..+|.+++|.++|.|.+..+..++........++.+|+.|+.+.||.+.
T Consensus 239 ~kg~~igi~efa~~l~---v-pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLR---V-PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred ccCCCcceeEeeeeee---c-chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccc
Confidence 3444555544433222 1 22366788999999999999999999999888887888888999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC
Q psy13257 139 FANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSLY 188 (188)
Q Consensus 139 ~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~ 188 (188)
..+|..+|+..- ++.+-.+--+|...+...+|+|++++|..++...|-|
T Consensus 315 e~~ls~ilq~~l-gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 315 EHILSLILQVVL-GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred hHHHHHHHHHhc-CcceeeccccchhhhcccCcceeHHHHHHHHHhCchh
Confidence 999999998532 2333335667888899999999999999999887743
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=1.6e-07 Score=45.22 Aligned_cols=27 Identities=37% Similarity=0.725 Sum_probs=16.0
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy13257 122 ILKAFRLFDEDNTGKISFANLRSVAVE 148 (188)
Q Consensus 122 ~~~~f~~~D~~~~g~I~~eef~~~l~~ 148 (188)
++.+|+.+|.|++|.|+.+||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 445566666666666666666665543
No 71
>KOG0751|consensus
Probab=98.50 E-value=2.9e-06 Score=66.57 Aligned_cols=110 Identities=17% Similarity=0.310 Sum_probs=81.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHH-HHHcCCCCCHHHHHH-HHHhhCCCCCCcccHHHHHHHHHHhhcC
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIA-MRALGFEPKKEEIKK-MISEISKDNSGLLTYKDFLHLVTQKMAD 115 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~-l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 115 (188)
...-.+++++.+.-.|...+.++...++.++|... +..++..-..+++.+ +-...|..+||.|+|+||+.+-...+..
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p 106 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP 106 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc
Confidence 34556667777777777778888999999998654 444454444444444 4445567789999999999876655522
Q ss_pred cchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC
Q psy13257 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG 150 (188)
Q Consensus 116 ~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~ 150 (188)
......+|..+|..++|.++.+++.+++....
T Consensus 107 ---Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 107 ---DALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred ---hHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 44677899999999999999999999998753
No 72
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.48 E-value=2.4e-07 Score=44.60 Aligned_cols=28 Identities=57% Similarity=0.870 Sum_probs=26.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 157 EIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 157 ~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
+++.+|+.+|.|++|.|+++||..+|++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999875
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.47 E-value=7.2e-07 Score=56.62 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
..+++++...+..+|..++. .+|.|+..+...+|...+ ++.+.+..+|...|.+++|.++++||+.++..
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 35788899999999999985 589999999999988764 67799999999999999999999999987753
No 74
>KOG0751|consensus
Probab=98.46 E-value=1.1e-06 Score=68.79 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHcCCC------CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHH
Q psy13257 50 QEAFALFDKEGTGSISTKELKIAMRALGFE------PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEIL 123 (188)
Q Consensus 50 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~------~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 123 (188)
+.+|..+|..++|.++.+++..++...... ...+-++. .+..+....++|.+|.+++.... .+...
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~~-----~E~~~ 182 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEFQ-----LEHAE 182 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHHH-----HHHHH
Confidence 566777777777777777777776554221 11222222 33334455677777777776654 56788
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh-hCCCCCCcccHHHHHH
Q psy13257 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINE-ADKDGDGEINEEEFLH 180 (188)
Q Consensus 124 ~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~-~d~~~~g~i~~~eF~~ 180 (188)
++|+..|+.++|+|+.-+|+.++...-.++....++..+-. ...+...++|+..|..
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 99999999999999999999999877666544455544443 4455566788877763
No 75
>KOG0169|consensus
Probab=98.43 E-value=7.7e-06 Score=67.30 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHH
Q psy13257 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKE 120 (188)
Q Consensus 41 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 120 (188)
.......-+..+|...|++++|.+++.+...++..+...+....+..+++..+...++.+..+++..+........
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---- 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---- 205 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----
Confidence 3334446678999999999999999999999999988888888899999999888899999999999988765333
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHhc
Q psy13257 121 EILKAFRLFDEDNTGKISFANLRSVAVELG--ENIADEEIQEMINEADKD----GDGEINEEEFLHIMKKT 185 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~eef~~~l~~~~--~~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~l~~~ 185 (188)
.+..+|..+-.+ .++++.+++..+|.... ..++.+.+..|++.+... ..+.++.+.|..+|...
T Consensus 206 ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 206 EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 788888888666 89999999999999775 467888888888877433 34569999999998653
No 76
>KOG1029|consensus
Probab=98.42 E-value=1e-05 Score=66.55 Aligned_cols=141 Identities=18% Similarity=0.305 Sum_probs=110.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhc--
Q psy13257 37 PKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMA-- 114 (188)
Q Consensus 37 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~-- 114 (188)
....++.++.......|..+. -+.|+||..+-+.++...+ ++...+..+|...|.|+||+++..||...+....-
T Consensus 6 n~WavT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 6 NPWAVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CccccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 346677777777778887764 4578999998888876654 56678889999999999999999999876541100
Q ss_pred --------------------------------------------------------------------------------
Q psy13257 115 -------------------------------------------------------------------------------- 114 (188)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (188)
T Consensus 83 qG~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~ 162 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSN 162 (1118)
T ss_pred cCCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ---------------------------CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q psy13257 115 ---------------------------DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADK 167 (188)
Q Consensus 115 ---------------------------~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~ 167 (188)
.....-+++++|+.+|+...|+++...-+.+|-..+ ++...+.+|+...|.
T Consensus 163 spl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDv 240 (1118)
T KOG1029|consen 163 SPLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDV 240 (1118)
T ss_pred CCCCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeecc
Confidence 000112468899999999999999999999887655 788899999999999
Q ss_pred CCCCcccHHHHHHHH
Q psy13257 168 DGDGEINEEEFLHIM 182 (188)
Q Consensus 168 ~~~g~i~~~eF~~~l 182 (188)
|+||+++-+||+-.|
T Consensus 241 d~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 241 DGDGKLSADEFILAM 255 (1118)
T ss_pred CCCCcccHHHHHHHH
Confidence 999999999998655
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.42 E-value=5.3e-07 Score=44.27 Aligned_cols=30 Identities=40% Similarity=0.792 Sum_probs=24.5
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHH-HhC
Q psy13257 121 EILKAFRLFDEDNTGKISFANLRSVAV-ELG 150 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~eef~~~l~-~~~ 150 (188)
+++.+|+.+|.+++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999988 554
No 78
>KOG0031|consensus
Probab=98.28 E-value=7.2e-06 Score=54.68 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCcee
Q psy13257 60 GTGSISTKELKIAMRA-LGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKIS 138 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~ 138 (188)
..|-|++.-|..++.. |...-+++.+...|+.+|.++.|.|.-+.+.+++.. ...+-..+.+..+|+.+-++..|.|.
T Consensus 77 a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt-~gDr~~~eEV~~m~r~~p~d~~G~~d 155 (171)
T KOG0031|consen 77 APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTT-MGDRFTDEEVDEMYREAPIDKKGNFD 155 (171)
T ss_pred CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHH-hcccCCHHHHHHHHHhCCcccCCcee
Confidence 3566766666666633 333344566666666777766777776666666655 33455566677777777666677777
Q ss_pred HHHHHHHHH
Q psy13257 139 FANLRSVAV 147 (188)
Q Consensus 139 ~eef~~~l~ 147 (188)
...|..++.
T Consensus 156 y~~~~~~it 164 (171)
T KOG0031|consen 156 YKAFTYIIT 164 (171)
T ss_pred HHHHHHHHH
Confidence 777766665
No 79
>KOG0038|consensus
Probab=98.27 E-value=8.6e-06 Score=53.83 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=77.3
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHH----HHH
Q psy13257 50 QEAFALFDKEGTGSISTKELKIAMRALG-FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEE----ILK 124 (188)
Q Consensus 50 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~----~~~ 124 (188)
+++...+..++.|.+++++|..++.-+. ..+-+-.+...|+.+|-++++.|.-.++...+...++..-..+. +.+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 4555666789999999999999886653 23334445667888999999999999999888887765544444 345
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHHhC
Q psy13257 125 AFRLFDEDNTGKISFANLRSVAVELG 150 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l~~~~ 150 (188)
+.+.-|.|++|.|+..||..++....
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 67777999999999999999876543
No 80
>KOG2562|consensus
Probab=98.23 E-value=1.1e-05 Score=62.85 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=101.7
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHH--HHHcC------------CCCCHHHHHHH---HHhhCCCCCCcccHHHHHHHH
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIA--MRALG------------FEPKKEEIKKM---ISEISKDNSGLLTYKDFLHLV 109 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~--l~~~~------------~~~~~~~~~~l---~~~~d~~~~~~i~~~ef~~~~ 109 (188)
-.++++|..++..++|.|+..++... +..+. .-.+-+-...+ +..+|.+++|.|+-++...+.
T Consensus 225 tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 225 TVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred HHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 34588899999999999999987543 22211 11122223333 778899999999999998887
Q ss_pred HHhhcCcchHHHHHHHHH----hhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 110 TQKMADKDSKEEILKAFR----LFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 110 ~~~~~~~~~~~~~~~~f~----~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.... ..--+.++|. .+-...+|.|+.++|..++-+....-++.-++.+|+.+|.+++|.++..|..-+.+.
T Consensus 305 d~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 305 DHTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred ccch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 6654 2446778888 444567899999999999998887778888999999999999999999887765543
No 81
>KOG4251|consensus
Probab=98.21 E-value=8.1e-06 Score=58.67 Aligned_cols=134 Identities=15% Similarity=0.262 Sum_probs=97.9
Q ss_pred HHHHHHHHhhcCC-CCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCc---c----
Q psy13257 47 ADIQEAFALFDKE-GTGSISTKELKIAMRA-LGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADK---D---- 117 (188)
Q Consensus 47 ~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~---~---- 117 (188)
+.+..-+.+.|.- .+-.++..||..+|.- .....-...+..+++.+|.+++..++..+|+.+........ +
T Consensus 198 enlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddn 277 (362)
T KOG4251|consen 198 ENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDN 277 (362)
T ss_pred HhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHH
Confidence 4445555555543 2456777888887743 22334456678899999999999999999998754332221 1
Q ss_pred -hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13257 118 -SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLH 180 (188)
Q Consensus 118 -~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 180 (188)
.....+..=+.+|.+.+|.++.+|+..+.......++..++..++..-|.|++.+++.++.+.
T Consensus 278 wvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 278 WVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 123445566778999999999999999877767777778888899999999999999998763
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.20 E-value=2.6e-06 Score=41.73 Aligned_cols=30 Identities=47% Similarity=0.875 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHH-HcC
Q psy13257 48 DIQEAFALFDKEGTGSISTKELKIAMR-ALG 77 (188)
Q Consensus 48 ~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 77 (188)
+++.+|..+|.+++|.|+..||..+|. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 564
No 83
>KOG0377|consensus
Probab=98.19 E-value=7.9e-06 Score=63.38 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMRAL----GFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
..+..+|+.+|.|++|.|+.+||..++..+ ...++++++.++.+.+|-++||.|+++||++.+...
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 456788999999999999999998876554 456788888889999999999999999998888654
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.19 E-value=9.7e-06 Score=63.35 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
....++.+|+.+|.+++|.|+.+||.. ++.+|+.+|.|+||.|+++||...+...
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 455678899999999999999999942 5788999999999999999999988754
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.14 E-value=1.4e-05 Score=43.27 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 64 ISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 64 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
+++.|++.+|+.+.+.+.+..+..+|+.+|..++|.+.-+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 567777777777777777777777777777777777777777777654
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.10 E-value=6e-06 Score=38.25 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=15.1
Q ss_pred HHHHHhhCCCCCCceeHHHHHHH
Q psy13257 123 LKAFRLFDEDNTGKISFANLRSV 145 (188)
Q Consensus 123 ~~~f~~~D~~~~g~I~~eef~~~ 145 (188)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45666667777777776666654
No 87
>KOG0030|consensus
Probab=98.07 E-value=0.00012 Score=48.14 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCC--CCCceeHHHHHHHHHHhCC---CCCH
Q psy13257 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDED--NTGKISFANLRSVAVELGE---NIAD 155 (188)
Q Consensus 81 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~I~~eef~~~l~~~~~---~~~~ 155 (188)
...+++.+|..+|..+|++|++.+.-..++..- ..+....+.+....++++ +--.|+.|+|.-+++.++. ..+-
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 347788999999999999999999888877654 555666788888888777 5578999999888887753 3566
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 156 EEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 156 ~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
+++-+-++.+|++++|.|...++..+|..
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 77777888999999999999999888764
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.03 E-value=3.3e-05 Score=41.85 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=31.0
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 137 ISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 137 I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
++..|++.+|+.+...+.+.-+..+|+.+|.+++|.+.-+||..+++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 566677777777777777777777777777777777777777776654
No 89
>KOG0046|consensus
Probab=97.97 E-value=4.9e-05 Score=60.21 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFE---PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
...++++++..+.+.|..+| +++|+|+..++..++...+.. ...++++.++...+.+.+|.|+|++|+.++....
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 35789999999999999999 999999999999999886543 3578899999999999999999999999877654
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.90 E-value=7.3e-05 Score=58.54 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=52.7
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q psy13257 76 LGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL 149 (188)
Q Consensus 76 ~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~ 149 (188)
.|.......+..+|+.+|.+++|.|+.+||+. ...+|..+|.|++|.|+.+||..++...
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35667788899999999999999999999942 4678999999999999999999998753
No 91
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.86 E-value=2.5e-05 Score=36.15 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 158 IQEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 158 ~~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
++.+|+.+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.72 E-value=1.7e-05 Score=51.23 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=45.6
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHI 181 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 181 (188)
.....+.-.|..+|.+++|.|+..|+..+...+ .-.+..+..+++..|.|+||.||..||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 345567778999999999999999998876533 234556888999999999999999999753
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.71 E-value=1.1e-05 Score=52.13 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFL 106 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~ 106 (188)
..+.=.|..+|.|+||.|+..|+..+...+ ...+.-+..+++.+|.++++.|++.||.
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 344445555555555555555555444333 2333444555555555555555555554
No 94
>KOG0040|consensus
Probab=97.65 E-value=0.00039 Score=61.49 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcc------hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC--CCCC
Q psy13257 83 EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKD------SKEEILKAFRLFDEDNTGKISFANLRSVAVELG--ENIA 154 (188)
Q Consensus 83 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~------~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~--~~~~ 154 (188)
.++..+|+.||.+.+|.+++.+|..++..+-+..+ ....+..+....||+.+|+|+..++.+++..-. ..++
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 44567788888888888888888887776544432 223677788888888888888888877776432 3456
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHH
Q psy13257 155 DEEIQEMINEADKDGDGEINEEEFL 179 (188)
Q Consensus 155 ~~~~~~l~~~~d~~~~g~i~~~eF~ 179 (188)
.+++...|+.++. +..+|+..+..
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELY 2356 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHHHH
Confidence 6778888888877 45566666553
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.60 E-value=0.00022 Score=43.41 Aligned_cols=64 Identities=23% Similarity=0.412 Sum_probs=51.7
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHhC-C-CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHhc
Q psy13257 121 EILKAFRLFDEDNTGKISFANLRSVAVELG-E-NIADEEIQEMINEADKD----GDGEINEEEFLHIMKKT 185 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-~-~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~l~~~ 185 (188)
.+..+|..|.. +.+.|+.++|..+|+... . .++...+..++..+..+ ..+.+++++|..+|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36778999955 789999999999998664 3 46899999999988654 46899999999999653
No 96
>KOG1707|consensus
Probab=97.36 E-value=0.0043 Score=50.43 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH-HHcCCCCCHHHHHHHHHhhCCC---C--CCcccHHHHHHHHHH
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAM-RALGFEPKKEEIKKMISEISKD---N--SGLLTYKDFLHLVTQ 111 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~l~~~~d~~---~--~~~i~~~ef~~~~~~ 111 (188)
...+.+..++.+.++|..-|.|.+|.++-.|+-.+= .+++.++...++..+-...+.. + +..++..-|+-+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 457888899999999999999999999999997763 5567777766665554444222 1 344445555554332
Q ss_pred hhcC-----------------------------------------cchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC
Q psy13257 112 KMAD-----------------------------------------KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG 150 (188)
Q Consensus 112 ~~~~-----------------------------------------~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~ 150 (188)
+... ....+.+..+|..+|.|+||.++.+|+..++...+
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 1100 01234578899999999999999999999999876
Q ss_pred CCC-CHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 151 ENI-ADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 151 ~~~-~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
... +..-. -..-..+..|.+++..|++.+.
T Consensus 346 ~~pW~~~~~---~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 346 GSPWTSSPY---KDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCCcc---cccceecccceeehhhHHHHHH
Confidence 322 10000 0011234688899998887664
No 97
>KOG0046|consensus
Probab=97.21 E-value=0.0021 Score=51.36 Aligned_cols=64 Identities=28% Similarity=0.437 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGEN---IADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~---~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
...++..|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|.|++++|+..+.
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 346777899999 999999999999999987643 3588999999999999999999999998554
No 98
>KOG1955|consensus
Probab=97.14 E-value=0.0027 Score=50.46 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=67.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 37 PKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 37 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
..+.+++++.+++...|+.+-.|-+|.|+-.--+.++.+. .+...++..||...|.+.||.+++.|||..+....
T Consensus 221 ~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 221 TPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred CccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 5779999999999999999999999999999888888775 56778999999999999999999999999887543
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.06 E-value=0.00097 Score=30.94 Aligned_cols=25 Identities=44% Similarity=0.820 Sum_probs=12.3
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHH
Q psy13257 123 LKAFRLFDEDNTGKISFANLRSVAV 147 (188)
Q Consensus 123 ~~~f~~~D~~~~g~I~~eef~~~l~ 147 (188)
+.+|+.+|.+++|.|+..+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3445555555555555555544443
No 100
>KOG4065|consensus
Probab=97.02 E-value=0.0028 Score=40.41 Aligned_cols=57 Identities=25% Similarity=0.399 Sum_probs=42.3
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHHh------C---CC-CCHHHH----HHHHHhhCCCCCCcccHHHHHHH
Q psy13257 125 AFRLFDEDNTGKISFANLRSVAVEL------G---EN-IADEEI----QEMINEADKDGDGEINEEEFLHI 181 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l~~~------~---~~-~~~~~~----~~l~~~~d~~~~g~i~~~eF~~~ 181 (188)
.|+..|.|+++.|+.-|+..++... | .+ .++.++ +.+++..|.|+||.|+|-||+..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5788888888888888887777643 2 12 245554 55666779999999999999864
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.01 E-value=0.0015 Score=30.23 Aligned_cols=26 Identities=46% Similarity=0.712 Sum_probs=17.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 159 QEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 159 ~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
..+|..+|.+++|.|++.+|..+++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 44566667777777777777766653
No 102
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.98 E-value=0.012 Score=40.55 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=83.1
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC---CCCcccHHHHHHHHHHhh-----------
Q psy13257 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKD---NSGLLTYKDFLHLVTQKM----------- 113 (188)
Q Consensus 48 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~---~~~~i~~~ef~~~~~~~~----------- 113 (188)
.|++=..-+|.|+||.|..-|-...++.+|..+....+..++-..... ..+-+.-.-|..++....
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 456666778999999999999999999998875444333322211000 001010000100111000
Q ss_pred --cCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCC-------CCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 114 --ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN-------IADEEIQEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 114 --~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~-------~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
..+-..+++..+|..++..+.+.++..|+.++++.-... ...-|...++... .+.+|.+..++-..+.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 012246799999999999999999999999999863221 2234455555554 6789999998877654
No 103
>KOG4666|consensus
Probab=96.97 E-value=0.0044 Score=46.74 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHH
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMRAL-GFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKA 125 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 125 (188)
..+...|..||.+++|.+++.|--..+.-+ +-..+...++.-|+.++...||.+.=.+|..+++..+.-. .=.+-.+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeecccc
Confidence 668889999999999999998876666554 4455677789999999999999999888888877654221 1145668
Q ss_pred HHhhCCCCCCceeHHHHHHHHHHhC
Q psy13257 126 FRLFDEDNTGKISFANLRSVAVELG 150 (188)
Q Consensus 126 f~~~D~~~~g~I~~eef~~~l~~~~ 150 (188)
|..++...+|.|+.++|+.+....+
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 9999999999999999999988655
No 104
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.95 E-value=0.014 Score=35.93 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVEL-------GE----NIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSL 187 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~-------~~----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~ 187 (188)
.++++.+|..+ .|.+|.+++..|..+|+.. |+ .-.+..++.+|... .....|+.++|+++|...|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 46788899999 7889999999999988863 21 23677788888886 35667999999999998874
No 105
>KOG0035|consensus
Probab=96.93 E-value=0.019 Score=49.23 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK-----EEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
....++....+++..|+.+++...|.++.+++..+|-.+|..... .+...+....+...-|.++|.+|...+...
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 346667777999999999999999999999999999999887664 223444445455556889999999999988
Q ss_pred hcCcchHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy13257 113 MADKDSKEEILKAFRLFDEDNTGKISFANLRS 144 (188)
Q Consensus 113 ~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~ 144 (188)
....+....+...|+.+-++.. +|..+|+.+
T Consensus 818 ~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 YEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 8788888899999999977766 788888877
No 106
>KOG1955|consensus
Probab=96.90 E-value=0.0028 Score=50.32 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
.+++..-|+.+-+|-+|+|+..--+.++... .+...++.+||+..|.+.||-++++||++.|.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4567778999999999999999999988864 47788999999999999999999999998764
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=96.73 E-value=0.023 Score=47.07 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=62.0
Q ss_pred CCCcccHHHHHHHHHHhh-cCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhC------
Q psy13257 96 NSGLLTYKDFLHLVTQKM-ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE--NIADEEIQEMINEAD------ 166 (188)
Q Consensus 96 ~~~~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~--~~~~~~~~~l~~~~d------ 166 (188)
+.|.++|++|..++.... ........+..+|..+-.+ .+.|+.++|..+|..... ..+.+.+..|++.+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357899999988877653 2223466899999999654 468999999999997642 366677777765431
Q ss_pred -CCCCCcccHHHHHHHHHh
Q psy13257 167 -KDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 167 -~~~~g~i~~~eF~~~l~~ 184 (188)
....+.++++.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112345899999999874
No 108
>KOG0998|consensus
Probab=96.72 E-value=0.0094 Score=51.55 Aligned_cols=142 Identities=20% Similarity=0.303 Sum_probs=113.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh---hc
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK---MA 114 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~---~~ 114 (188)
...++..+...+..+|..+... +|.++....+-+|..- .++...+.++|...|.+.+|.+++.||...+... +.
T Consensus 120 ~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~ 196 (847)
T KOG0998|consen 120 VPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLN 196 (847)
T ss_pred CCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhh
Confidence 4468888888899999998776 8899988888777654 3566777889999999999999999998864411 00
Q ss_pred --------------------------------------------------------------------------------
Q psy13257 115 -------------------------------------------------------------------------------- 114 (188)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (188)
T Consensus 197 ~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~ 276 (847)
T KOG0998|consen 197 GNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPK 276 (847)
T ss_pred cccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcc
Confidence
Q ss_pred -CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 115 -DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 115 -~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
.......+..+|...|.+.+|.|+..+....+...| +....+.++|...+..++|.+++.+|.-.+-.
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 001223466789999999999999999999888744 78889999999999999999999988866543
No 109
>KOG4065|consensus
Probab=96.63 E-value=0.015 Score=37.12 Aligned_cols=68 Identities=24% Similarity=0.454 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc------CCC----CCHHHHHHH----HHhhCCCCCCcccHH
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRAL------GFE----PKKEEIKKM----ISEISKDNSGLLTYK 103 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~~----~~~~~~~~l----~~~~d~~~~~~i~~~ 103 (188)
..++++++++ ...|..+|.|+++.++--|+..++... |.. .++.++..+ ++..|.+++|.|+|-
T Consensus 60 ~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 60 VAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 4466666653 346788899999999998888877542 221 234444443 334456677777777
Q ss_pred HHHH
Q psy13257 104 DFLH 107 (188)
Q Consensus 104 ef~~ 107 (188)
||+.
T Consensus 138 EflK 141 (144)
T KOG4065|consen 138 EFLK 141 (144)
T ss_pred HHHh
Confidence 7754
No 110
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.56 E-value=0.0098 Score=36.09 Aligned_cols=64 Identities=13% Similarity=0.317 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhhcCc-chHHHHHHHHHhhCCC----CCCceeHHHHHHHHHHh
Q psy13257 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADK-DSKEEILKAFRLFDED----NTGKISFANLRSVAVEL 149 (188)
Q Consensus 85 ~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~----~~g~I~~eef~~~l~~~ 149 (188)
+..+|..+.. +.+.++.++|..++...++.. ...+.+..++..|.++ ..+.++.+.|..+|.+-
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 4556666633 556666666666666554442 2355566666666443 46888999998888654
No 111
>KOG3555|consensus
Probab=96.51 E-value=0.014 Score=44.39 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCHHHH----HHHHHHHHhhcCCCCCccCHHHHHHHH---HHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 40 ELTPEQV----ADIQEAFALFDKEGTGSISTKELKIAM---RALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 40 ~~~~~~~----~~l~~~f~~~d~~~~g~i~~~e~~~~l---~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
.=+..++ .+|++.|..+-.+.++......+...- ...-.++.+.++.-+|..+|.+.++.++..|+..+....
T Consensus 200 ~Ct~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk 279 (434)
T KOG3555|consen 200 ACTDQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK 279 (434)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC
Confidence 3455555 667888888867666655555554432 222234678889999999999999999999987776543
Q ss_pred hcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH
Q psy13257 113 MADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMI 162 (188)
Q Consensus 113 ~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~ 162 (188)
. +..++-.|...|...+|.|+..|....+.... .....++..|-
T Consensus 280 n-----E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~riq 323 (434)
T KOG3555|consen 280 N-----EACIKPFFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRIQ 323 (434)
T ss_pred c-----hhHHHHHHhhhcccccCccccchhhhhhccCC-CccccHHHHHH
Confidence 2 55889999999999999999999999888766 33344444443
No 112
>KOG2243|consensus
Probab=95.84 E-value=0.018 Score=51.40 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=50.6
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 125 AFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
.|+.||+|+.|.|+..+|...+... ...|..+++-++.....|.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3888999999999999999998742 356888999999999999999999999997654
No 113
>KOG4578|consensus
Probab=95.60 E-value=0.015 Score=44.01 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=49.8
Q ss_pred HHHHHHHhhCCCCCCceeHHH---HHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 121 EILKAFRLFDEDNTGKISFAN---LRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~ee---f~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.++.-|..+|++.++.|.+.| |++++.... -.....+.+++..|.|+|..|++.|+...|-..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 455569999999999999998 566666543 234456788999999999999999999888654
No 114
>KOG1029|consensus
Probab=95.57 E-value=0.11 Score=43.84 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 42 TPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVT 110 (188)
Q Consensus 42 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 110 (188)
+......++.+|+.+|+..+|+++-.+-+.+|...+ ++...+..+|..-|.|+||+++-+||+..+.
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 333446678999999999999999999998887654 5677788899999999999999999988654
No 115
>KOG0042|consensus
Probab=95.19 E-value=0.11 Score=42.42 Aligned_cols=79 Identities=15% Similarity=0.318 Sum_probs=71.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 35 SGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 35 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
....-.++++++......|..+|.++.|.++..+....|+..+...+.+.+.++++..+..-.|.+...+|.+++....
T Consensus 581 ~~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 581 MSIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred cccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 3345688999999999999999999999999999999999988889999999999999888899999999999887654
No 116
>KOG0169|consensus
Probab=95.11 E-value=0.34 Score=40.96 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=75.4
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHH
Q psy13257 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQE 160 (188)
Q Consensus 81 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~ 160 (188)
.+..+..++...|.+.+|.+++.+-..+..... ..-...+++.+|+..|...++.+..+++..+....... + ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHHH
Confidence 345567888899999999999999988877654 33456688889999999999999999999988876532 2 6667
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 161 MINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 161 l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
+|..+-.+ .+.++..++..+|..
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHHHH
Confidence 77776433 667777777766654
No 117
>KOG4347|consensus
Probab=95.09 E-value=0.19 Score=41.63 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=75.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcC-CC------CCc-------cCHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCc
Q psy13257 35 SGPKFELTPEQVADIQEAFALFDK-EG------TGS-------ISTKELKIAMRAL-GFEPKKEEIKKMISEISKDNSGL 99 (188)
Q Consensus 35 ~~~~~~~~~~~~~~l~~~f~~~d~-~~------~g~-------i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~ 99 (188)
......++.+++..+..+|..--. +. +-. +.+..+..++..+ .+..+..-..++|+..|...+|.
T Consensus 492 ~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~ 571 (671)
T KOG4347|consen 492 VVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGL 571 (671)
T ss_pred hcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcce
Confidence 345568899999999998865311 11 111 2222333333332 22234455688999999999999
Q ss_pred ccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHH
Q psy13257 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANL 142 (188)
Q Consensus 100 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef 142 (188)
++|.+++..+.... ..+..+++..+|+.+|++++ ...+++.
T Consensus 572 Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 572 LTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred eEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999988765 66678899999999999999 9999888
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.92 E-value=0.28 Score=33.57 Aligned_cols=59 Identities=17% Similarity=0.409 Sum_probs=44.8
Q ss_pred HHhhCCCCCCceeHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 126 FRLFDEDNTGKISFANLRSVAVELG---ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 126 f~~~D~~~~g~I~~eef~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
|..|-..+...|+...|..+|+..+ ..++...++.+|..+...+...|+|++|..+|..
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 3333456677899999999999876 3588999999999987666677999999988864
No 119
>KOG1265|consensus
Probab=94.80 E-value=1.5 Score=38.08 Aligned_cols=119 Identities=16% Similarity=0.263 Sum_probs=81.6
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC-------CCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCC
Q psy13257 59 EGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDN-------SGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDE 131 (188)
Q Consensus 59 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-------~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~ 131 (188)
+..|.|....+...+.. .-.+..++..+..+.... -...+++.|..++...+ ....+..+|..+..
T Consensus 160 n~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc----pR~eie~iF~ki~~ 232 (1189)
T KOG1265|consen 160 NFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC----PRPEIEEIFRKISG 232 (1189)
T ss_pred cccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC----CchhHHHHHHHhcc
Confidence 44566666555544433 122244444444443221 12345666777776655 23489999999999
Q ss_pred CCCCceeHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCCCC----CCcccHHHHHHHHHh
Q psy13257 132 DNTGKISFANLRSVAVEL----------GENIADEEIQEMINEADKDG----DGEINEEEFLHIMKK 184 (188)
Q Consensus 132 ~~~g~I~~eef~~~l~~~----------~~~~~~~~~~~l~~~~d~~~----~g~i~~~eF~~~l~~ 184 (188)
++..+++.++|..+|..- -..+.+..+..|++.+..|. .|+++-+.|+.+|..
T Consensus 233 ~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 233 KKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 999999999999999853 23567888999999997664 589999999998864
No 120
>KOG3555|consensus
Probab=94.32 E-value=0.078 Score=40.55 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.....+--+|..+|.+.+|.++..|+..+... --+..++.+|...|...||.|+-.||+..+.+.
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 34567888999999999999999999886643 346678999999999999999999999887654
No 121
>KOG0042|consensus
Probab=94.15 E-value=0.11 Score=42.54 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=57.9
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 122 ILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 122 ~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.+.-|..+|.++.|+++..+...+|++.+..++++.++.+++..+.+..|.+...||.+++...
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 3456999999999999999999999998888999999999999999999999999999887643
No 122
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.60 E-value=1.7 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 153 IADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 153 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
..+..++.||..++....+.+++.|...+++.
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 44555666666665555556666666665554
No 123
>KOG4578|consensus
Probab=93.45 E-value=0.063 Score=40.74 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=47.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy13257 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE 148 (188)
Q Consensus 85 ~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~ 148 (188)
+...|..+|.++++.|+-.||.-+=..+.+........+.+|+..|.+++-.|+..|+...|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4566777788888888877777665555555556667788888888888888888888877764
No 124
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.41 E-value=0.73 Score=31.54 Aligned_cols=64 Identities=14% Similarity=0.352 Sum_probs=47.6
Q ss_pred HHHHHhh---cCCCCCccCHHHHHHHHHHcCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 50 QEAFALF---DKEGTGSISTKELKIAMRALGF---EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 50 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
+.+|..| -......|+-..|..++..+++ .++..++..+|..+...+...|+|++|+.++....
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4455555 3455678999999999988643 57889999999998777777899999999887543
No 125
>KOG1707|consensus
Probab=93.29 E-value=0.32 Score=40.02 Aligned_cols=96 Identities=25% Similarity=0.348 Sum_probs=63.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 34 PSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 34 ~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
++....++++.-++.+..+|..+|.++||.++..|+..++..+...+....... ...-....|.++++-|+..|...+
T Consensus 302 ~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~--~~t~~~~~G~ltl~g~l~~WsL~T 379 (625)
T KOG1707|consen 302 PPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK--DSTVKNERGWLTLNGFLSQWSLMT 379 (625)
T ss_pred CCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc--ccceecccceeehhhHHHHHHHHh
Confidence 445567899999999999999999999999999999999988754431100000 000112579999999999887654
Q ss_pred cCcchHHHH-HHHHHhhCCC
Q psy13257 114 ADKDSKEEI-LKAFRLFDED 132 (188)
Q Consensus 114 ~~~~~~~~~-~~~f~~~D~~ 132 (188)
..+....+ ..+|-.|..+
T Consensus 380 -lld~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 380 -LLDPRRTLEYLAYLGFPTD 398 (625)
T ss_pred -hccHHHHHHHHHhcCCccc
Confidence 22222222 2245555544
No 126
>PLN02952 phosphoinositide phospholipase C
Probab=92.50 E-value=2 Score=36.04 Aligned_cols=87 Identities=9% Similarity=0.162 Sum_probs=61.0
Q ss_pred CCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCc-chHHHHHHHHHhh----C--
Q psy13257 60 GTGSISTKELKIAMRALGF--EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADK-DSKEEILKAFRLF----D-- 130 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----D-- 130 (188)
+.|.+++.+|..+.+.+.. .....++..+|..+.. +.+.++.++|..++...+... ...+.+..+++.+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999887776632 2367899999999854 446899999999998877543 2334444554432 1
Q ss_pred -CCCCCceeHHHHHHHHH
Q psy13257 131 -EDNTGKISFANLRSVAV 147 (188)
Q Consensus 131 -~~~~g~I~~eef~~~l~ 147 (188)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 12334589999998886
No 127
>KOG4347|consensus
Probab=91.92 E-value=0.42 Score=39.72 Aligned_cols=57 Identities=30% Similarity=0.368 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHH
Q psy13257 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEE 177 (188)
Q Consensus 120 ~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~e 177 (188)
--+.++|+.+|..++|.|+..+|...|..+-..--.+.++-+++.++.+.+ ....++
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 356779999999999999999999988866544445667888888888877 655443
No 128
>KOG4286|consensus
Probab=91.89 E-value=5.8 Score=34.07 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=73.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh-------------CC
Q psy13257 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL-------------GE 151 (188)
Q Consensus 85 ~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~-------------~~ 151 (188)
+..+++.||...+|.|..-+|...+..+. ....+++++.+|.....++.-++ ...|..+|..+ |.
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 47789999999999999999988887766 44567788999999987777665 55555554432 32
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC
Q psy13257 152 NIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSLY 188 (188)
Q Consensus 152 ~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~ 188 (188)
.--+-.+...|+. .++--.|++..|+..+...|.+
T Consensus 550 sNvepsvrsCF~~--v~~~pei~~~~f~dw~~~epqs 584 (966)
T KOG4286|consen 550 SNIEPSVRSCFQF--VNNKPEIEAALFLDWMRLEPQS 584 (966)
T ss_pred CCCChHHHHHHHh--cCCCCcchHHHHHHHhccCcch
Confidence 2223456777773 4556679999999999888753
No 129
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.88 E-value=0.33 Score=28.34 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-------CCCcccHHHHHH
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKD-------GDGEINEEEFLH 180 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~-------~~g~i~~~eF~~ 180 (188)
..+.+..+|+.+ .+++++|+.+||++.|.. +.++.+.+.+..- ..|.++|..|..
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 456899999999 889999999999997642 2234444443211 126688888864
No 130
>KOG0035|consensus
Probab=90.38 E-value=0.96 Score=39.32 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD-----EEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
...++..|+.+|....|.++.++|.+.|-.+|...-+ .++..+....+.+.-|++++.+|...|.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 4578889999999999999999999999999976653 334455556677777999999999988764
No 131
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.09 E-value=1.6 Score=36.43 Aligned_cols=64 Identities=19% Similarity=0.355 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHh
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGE--NIADEEIQEMINEADK-DGDGEINEEEFLHIMKK 184 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~l~~ 184 (188)
.+.+..+|..+-. ++.++.++|..+|..... ..+.+.+..|++.+.. ...+.++++.|..+|..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 4467777777643 357777777777775542 3456666666666421 23455777777777754
No 132
>KOG2243|consensus
Probab=89.74 E-value=0.78 Score=41.88 Aligned_cols=59 Identities=27% Similarity=0.482 Sum_probs=49.5
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 51 EAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVT 110 (188)
Q Consensus 51 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 110 (188)
+-|..+|+++.|.|+..+|..++... ...+..+++.++.-...+.+..++|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 34677899999999999999998763 346778888898888888899999999998654
No 133
>KOG3866|consensus
Probab=89.60 E-value=0.66 Score=35.19 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=42.8
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHHh-----CCCCCHHHH-----------HHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 125 AFRLFDEDNTGKISFANLRSVAVEL-----GENIADEEI-----------QEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l~~~-----~~~~~~~~~-----------~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
.|...|.+++|+++..|+..++..- ...-.++.+ .++++..|.|.|.-|+.++|++.-.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 3666788999999999998887632 222222221 3478889999999999999987543
No 134
>KOG0998|consensus
Probab=89.59 E-value=0.4 Score=41.89 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 40 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
.+++.+...+.++|...|.+++|.|+..+...++.. ..+....+..+|...+..+.+.+++.+|+..+..
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 788899999999999999999999999999888766 5678889999999999999999999998876553
No 135
>KOG1264|consensus
Probab=88.93 E-value=4.3 Score=35.28 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=85.1
Q ss_pred CCCHHHHH-HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHH-HHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcc
Q psy13257 40 ELTPEQVA-DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEE-IKKMISEISKDNSGLLTYKDFLHLVTQKMADKD 117 (188)
Q Consensus 40 ~~~~~~~~-~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 117 (188)
..++.+|. -+++.+..+|......|+..+++.+|.......+... +.+-+-.. ....+.++|++|..++..++....
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccc
Confidence 44555663 4467777778766777999999988876554443222 22223222 235678999999999988764433
Q ss_pred hHHHHHH----HHHhhCCCCCCceeHHHHHHHHHHhCCCCC---HHHHHHHHHhhCCC-----CCCcccHHHHHHHHH
Q psy13257 118 SKEEILK----AFRLFDEDNTGKISFANLRSVAVELGENIA---DEEIQEMINEADKD-----GDGEINEEEFLHIMK 183 (188)
Q Consensus 118 ~~~~~~~----~f~~~D~~~~g~I~~eef~~~l~~~~~~~~---~~~~~~l~~~~d~~-----~~g~i~~~eF~~~l~ 183 (188)
....+.. +...-+....-.|+..+|+++|........ ...+..++..|-.| ..-.+.+.||+.+|=
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 2221111 222233334468999999999986532211 12344444444222 244689999999873
No 136
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=88.66 E-value=0.43 Score=27.92 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q psy13257 98 GLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL 149 (188)
Q Consensus 98 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~ 149 (188)
--+.|..+...+.... ... ....+...|+.=..+.|+++||.+.++..
T Consensus 7 p~~~F~~L~~~l~~~l-~~~---~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHL-PPS---KMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHC-CHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3456666666666555 222 33334444444466778888887777753
No 137
>PLN02228 Phosphoinositide phospholipase C
Probab=88.20 E-value=3.2 Score=34.65 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHH
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELG--ENIADEEIQEMINEADKD----GDGEINEEEFLHIMK 183 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~--~~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~l~ 183 (188)
.+.+..+|..+-. ++.|+.++|..+|.... ...+.+.+..++..+... ..|.++.+.|..+|.
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 3455555555542 23566666666555443 123344455555555322 224566666666654
No 138
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.99 E-value=5 Score=33.78 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC-C--CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHh
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELG-E--NIADEEIQEMINEADK-------DGDGEINEEEFLHIMKK 184 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-~--~~~~~~~~~l~~~~d~-------~~~g~i~~~eF~~~l~~ 184 (188)
....+..+|..|-.++ +.++.++|.++|.... . ..+.+.+..++..+-. -..+.++.+.|..+|..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3457888888885444 7899999999988765 2 2356666666654421 12346999999998865
No 139
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=85.10 E-value=8.7 Score=25.78 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC-------CCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCC
Q psy13257 60 GTGSISTKELKIAMRALGFEPKKEEIKKMISEISKD-------NSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDED 132 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~-------~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 132 (188)
..+.++..||..+=.-+ ..+...+..++..+..+ ..+.|+|+-|..++..+...-...+..+.+|..|-..
T Consensus 4 ~~~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp --S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred ceeccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 35677777776654332 23445566777766333 3457777777777777664444455556666666443
No 140
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=84.95 E-value=5.5 Score=24.91 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCCccCHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCce
Q psy13257 60 GTGSISTKELKIAMRALG--FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKI 137 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I 137 (188)
.||.++..|...+-..+. ..++..+...++..+........++.+|...+...........-+..+|+.--. ||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCC
Confidence 378889888765543321 245667777777777665566678888888776544222223334445555543 3556
Q ss_pred eHHHH
Q psy13257 138 SFANL 142 (188)
Q Consensus 138 ~~eef 142 (188)
+..|-
T Consensus 90 ~~~E~ 94 (104)
T cd07313 90 DEYEE 94 (104)
T ss_pred CHHHH
Confidence 65553
No 141
>KOG3866|consensus
Probab=84.66 E-value=3.5 Score=31.46 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=12.8
Q ss_pred HHHhhCCCCCCceeHHHHHHHH
Q psy13257 125 AFRLFDEDNTGKISFANLRSVA 146 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l 146 (188)
+.+..|.+.+..|+.+||...-
T Consensus 301 VMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 301 VMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred HHHhcccchhhhhhHHHHHhhh
Confidence 3555566666666666665543
No 142
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=84.21 E-value=16 Score=27.56 Aligned_cols=97 Identities=9% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCCccCHHHHHHHHHHc--CCCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHH----HHHHHhh
Q psy13257 59 EGTGSISTKELKIAMRAL--GFEPKKEE---IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEI----LKAFRLF 129 (188)
Q Consensus 59 ~~~g~i~~~e~~~~l~~~--~~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~----~~~f~~~ 129 (188)
..||.|+..|.. +...+ ...++.+. +..+|+.- .....++.+|+..+...+..+ .+.+ ..+|..-
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r--~~l~~~lL~~l~~vA 140 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGR--FDLLRMFLEIQIQAA 140 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHH
Confidence 458999999986 33332 13345555 45555543 445588999999887655222 2222 3334443
Q ss_pred CCCCCCceeHHHHH---HHHHHhCCCCCHHHHHHHHHhh
Q psy13257 130 DEDNTGKISFANLR---SVAVELGENIADEEIQEMINEA 165 (188)
Q Consensus 130 D~~~~g~I~~eef~---~~l~~~~~~~~~~~~~~l~~~~ 165 (188)
= .||.++..|-. ++...+ .++..++..+...+
T Consensus 141 ~--ADG~l~~~E~~~L~~Ia~~L--gis~~df~~~~~~~ 175 (267)
T PRK09430 141 F--ADGSLHPNERQVLYVIAEEL--GFSRFQFDQLLRMM 175 (267)
T ss_pred H--hcCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 3 35778888733 333333 47777777766653
No 143
>KOG0039|consensus
Probab=83.48 E-value=3.3 Score=35.32 Aligned_cols=67 Identities=18% Similarity=0.380 Sum_probs=32.6
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVEL---G-----ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~---~-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
+.+++++-+|..+|. .+|.++.+++..++... + ...+.+....+++..|.+..|.+.++++...+..
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 344455555555555 55566665555544422 1 1122233344455555555555555555544443
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.88 E-value=3.5 Score=27.67 Aligned_cols=30 Identities=7% Similarity=0.174 Sum_probs=14.8
Q ss_pred ceeHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q psy13257 136 KISFANLRSVAVEL-GENIADEEIQEMINEA 165 (188)
Q Consensus 136 ~I~~eef~~~l~~~-~~~~~~~~~~~l~~~~ 165 (188)
.|+.+-|+.+|+.+ ...++++-..++|..|
T Consensus 48 ~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 48 PIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp EE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56666666666654 2345555555565555
No 145
>PLN02223 phosphoinositide phospholipase C
Probab=82.22 E-value=7.1 Score=32.39 Aligned_cols=66 Identities=8% Similarity=-0.056 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHH---HHhC--CCCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHHh
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVA---VELG--ENIADEEIQEMINEADKD--------GDGEINEEEFLHIMKK 184 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l---~~~~--~~~~~~~~~~l~~~~d~~--------~~g~i~~~eF~~~l~~ 184 (188)
..+.++.+|..|- ++.|.++.+.+.++| .... ...+.++.+.|++.+-.. ..+.++.+.|..+|..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4567888888884 677889988888888 4432 346677777777655322 1256999999999865
No 146
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=82.20 E-value=6.9 Score=22.74 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=29.5
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 138 SFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 138 ~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
+.+++..++...|..++..++..+++.-+..+--.++-+.+..+|.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 3456777777777777887777777775544444555555555553
No 147
>KOG2871|consensus
Probab=81.94 E-value=1.7 Score=33.95 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHH-HHHHHHhhCCCCCCcccHHHHH
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEE-IQEMINEADKDGDGEINEEEFL 179 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~-~~~l~~~~d~~~~g~i~~~eF~ 179 (188)
..+.++++|..+|+.++|+|+-+-++.++......+++.. +..+-..+|...-|.|-..+|.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 4568999999999999999999999999998875555433 3333334555555555444443
No 148
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=80.91 E-value=10 Score=23.10 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=29.2
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHH
Q psy13257 136 KISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEE 177 (188)
Q Consensus 136 ~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~e 177 (188)
.||..||..+.+.++..+|+..++.++..+..+.-.-.+-++
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~ 55 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQE 55 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 577788888888888888888888877777555444444443
No 149
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=80.15 E-value=11 Score=22.97 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC
Q psy13257 80 PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG 150 (188)
Q Consensus 80 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~ 150 (188)
+++.++...++..= .....|.+.+|...+....... .......+=..+|.-.+++||.-||.-+.+-++
T Consensus 4 ITK~eA~~FW~~~F-g~r~IVPW~~F~~~L~~~h~~~-~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 4 ITKAEAAEFWKTSF-GKRTIVPWSEFRQALQKVHPIS-SGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SSHHHHHHHHHHH-TT-SEEEHHHHHHHHHHHS--S-SHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eccHHHHHHHHHHC-CCCeEeeHHHHHHHHHHhcCCC-chHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 34555666555432 2346799999999998776333 333445566678999999999999988887665
No 150
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=78.21 E-value=17 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy13257 121 EILKAFRLFDEDNTGKISFANLRSVAVE 148 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~eef~~~l~~ 148 (188)
.+..++..||++++|.|+.-.|+..+..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3566789999999999999999887754
No 151
>KOG4070|consensus
Probab=76.37 E-value=10 Score=25.78 Aligned_cols=83 Identities=16% Similarity=0.309 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcC----CCCC-ccCHHHHHHHHHHcCC----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh----
Q psy13257 47 ADIQEAFALFDK----EGTG-SISTKELKIAMRALGF----EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM---- 113 (188)
Q Consensus 47 ~~l~~~f~~~d~----~~~g-~i~~~e~~~~l~~~~~----~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~---- 113 (188)
..+.+.|+.|-. ..+| .|+-..+..++..+++ .++.-+....|..+.-...+.++|++|...+..+.
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 334555555533 3333 6777788888887643 33444555566666555667899999977766543
Q ss_pred cCcchHHHHHHHHHhh
Q psy13257 114 ADKDSKEEILKAFRLF 129 (188)
Q Consensus 114 ~~~~~~~~~~~~f~~~ 129 (188)
+.+..++.+..+++.+
T Consensus 92 k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLL 107 (180)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 2233444455554444
No 152
>PLN02228 Phosphoinositide phospholipase C
Probab=74.86 E-value=23 Score=29.79 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=41.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCC--CCHHHHHHHHHhhCCCC----CCcccHHHHHH
Q psy13257 34 PSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFE--PKKEEIKKMISEISKDN----SGLLTYKDFLH 107 (188)
Q Consensus 34 ~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~l~~~~d~~~----~~~i~~~ef~~ 107 (188)
+.......+++++..+. ..+-. ++.|+.++|..+|...... ...+.+..++..+.... .+.++.+.|..
T Consensus 14 ~~~~~~~~~~~ei~~if---~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~ 88 (567)
T PLN02228 14 SFKEKTREPPVSIKRLF---EAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYR 88 (567)
T ss_pred cCCcCCCCCcHHHHHHH---HHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHH
Confidence 34455555666654444 44432 3578888888888776432 34566777777765432 24566666655
Q ss_pred HH
Q psy13257 108 LV 109 (188)
Q Consensus 108 ~~ 109 (188)
++
T Consensus 89 yl 90 (567)
T PLN02228 89 YL 90 (567)
T ss_pred Hh
Confidence 55
No 153
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=74.07 E-value=2.9 Score=27.69 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=47.3
Q ss_pred CCCccCHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCce
Q psy13257 60 GTGSISTKELKIAMRAL--GFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKI 137 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I 137 (188)
.||.++..|...+...+ ....+......+...++......+++.+++..+...........-+..++...-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 48899999987766554 22334555666666665444446777888766654332122233455567776665 455
Q ss_pred eHHH---HHHHHHHhC
Q psy13257 138 SFAN---LRSVAVELG 150 (188)
Q Consensus 138 ~~ee---f~~~l~~~~ 150 (188)
+.+| +.++...+|
T Consensus 114 ~~~E~~~l~~ia~~L~ 129 (140)
T PF05099_consen 114 SPEEQEFLRRIAEALG 129 (140)
T ss_dssp SCCHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5444 233444444
No 154
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=73.38 E-value=3.6 Score=26.58 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 80 PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 80 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
++++.++.+|..+-.+..|++.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 57889999999999999999999999987763
No 155
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=73.30 E-value=26 Score=23.75 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHHhh-------cC-cchH---HHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHH---
Q psy13257 97 SGLLTYKDFLHLVTQKM-------AD-KDSK---EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMI--- 162 (188)
Q Consensus 97 ~~~i~~~ef~~~~~~~~-------~~-~~~~---~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~--- 162 (188)
...|+++||...+.... .. .... +....+|..+ |...=+.+-+..+|..++++++..++
T Consensus 46 Ge~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g 118 (145)
T PF13623_consen 46 GEKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQG 118 (145)
T ss_pred CEEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcC
Confidence 34688888877665443 01 1111 2234455544 33334556666788888888887777
Q ss_pred -------HhhCCCCCCcccHHHHHHHH
Q psy13257 163 -------NEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 163 -------~~~d~~~~g~i~~~eF~~~l 182 (188)
..+-.+.+|.++...|..++
T Consensus 119 ~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 119 TNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred CCchhhhccccCcccCCcCHHHHHhhC
Confidence 12335678888888877653
No 156
>KOG1265|consensus
Probab=71.87 E-value=59 Score=29.07 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcC---------cchHHHHHHHHHhhCCCC---
Q psy13257 66 TKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMAD---------KDSKEEILKAFRLFDEDN--- 133 (188)
Q Consensus 66 ~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~---------~~~~~~~~~~f~~~D~~~--- 133 (188)
.+.|..++..+. ...+++.+|..+..++.-.++.++++.++...+.. .-..+.+..+.+.|.+++
T Consensus 207 ~e~f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a 283 (1189)
T KOG1265|consen 207 LEKFYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNA 283 (1189)
T ss_pred HHHHHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhh
Confidence 334555666553 33678999999988888899999999998865432 234567888888887765
Q ss_pred -CCceeHHHHHHHHHH
Q psy13257 134 -TGKISFANLRSVAVE 148 (188)
Q Consensus 134 -~g~I~~eef~~~l~~ 148 (188)
+|.|+.+-|.++|-.
T Consensus 284 ~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 284 EKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hccccchhhhHHHhhC
Confidence 788999999888763
No 157
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=70.33 E-value=19 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.2
Q ss_pred hhCCCCCCcccHHHHHHHHHH
Q psy13257 91 EISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 91 ~~d~~~~~~i~~~ef~~~~~~ 111 (188)
.+|+.....|+.++...++..
T Consensus 11 LYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC
Confidence 346666777777777777654
No 158
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=69.38 E-value=9.5 Score=23.92 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCC---CCCCcccHHHHHHHHHH
Q psy13257 46 VADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISK---DNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 46 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~---~~~~~i~~~ef~~~~~~ 111 (188)
...++.-|..+-. +|.++...|..|+.. .-+++-..++|..+-. -....|+.+|+..+|..
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM---~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGM---KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCC---cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 5677778887765 889999998877653 4556666666655521 12466777777777754
No 159
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.31 E-value=8.7 Score=16.67 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=10.3
Q ss_pred cCCCCCccCHHHHHHH
Q psy13257 57 DKEGTGSISTKELKIA 72 (188)
Q Consensus 57 d~~~~g~i~~~e~~~~ 72 (188)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4577777777776543
No 160
>PLN02222 phosphoinositide phospholipase C 2
Probab=69.08 E-value=29 Score=29.33 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCC--CCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFE--PKKEEIKKMISEISK-DNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~l~~~~d~-~~~~~i~~~ef~~~~~~ 111 (188)
....+.+ +..+|..+.. ++.|+.++|..+|...+.. .+.+.+..++..+.. ...+.++++.|..++..
T Consensus 20 ~~~~~~e---i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 20 ASEAPRE---IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cCCCcHH---HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3445554 5556666543 4799999999999886543 456778888877532 23567999999998864
No 161
>KOG3449|consensus
Probab=68.57 E-value=28 Score=22.26 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=35.7
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13257 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEA 165 (188)
Q Consensus 124 ~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~ 165 (188)
.+|-.++..++...+..++..+|.+.|....++.++.++..+
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 455666677888889999999999999999999999998887
No 162
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.11 E-value=12 Score=25.24 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=34.3
Q ss_pred HHHHhhCCCCCCceeHHHHHH---HHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q psy13257 124 KAFRLFDEDNTGKISFANLRS---VAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 124 ~~f~~~D~~~~g~I~~eef~~---~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 185 (188)
.+|...+. +|.++..|... +++. ...++.++++.++.....-+...+++..|...|++.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 44555554 45566555433 3332 234667777777766655556667777777776654
No 163
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=67.86 E-value=11 Score=23.47 Aligned_cols=80 Identities=15% Similarity=0.023 Sum_probs=40.8
Q ss_pred CCCcccHHHHHHHHHHhhc-CcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcc
Q psy13257 96 NSGLLTYKDFLHLVTQKMA-DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG-ENIADEEIQEMINEADKDGDGEI 173 (188)
Q Consensus 96 ~~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i 173 (188)
.||.++-.|-..+-..... .....+....+.+.+........+..+|.+.+.... ...-...+..++...- .||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 3788887776665443222 122234445555555554555667777766665422 1222233444454433 45666
Q ss_pred cHHH
Q psy13257 174 NEEE 177 (188)
Q Consensus 174 ~~~e 177 (188)
+-.|
T Consensus 90 ~~~E 93 (104)
T cd07313 90 DEYE 93 (104)
T ss_pred CHHH
Confidence 5554
No 164
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=67.19 E-value=13 Score=21.71 Aligned_cols=31 Identities=6% Similarity=0.157 Sum_probs=13.7
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 81 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
+......+...|+.-..+.|+-+||+..+..
T Consensus 23 ~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 23 PPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3333433333333334455555555554443
No 165
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=66.77 E-value=13 Score=21.31 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=25.9
Q ss_pred HhhCCCCCCceeHHHHHHHHHH----------hCCCCCHHHHHHHHH
Q psy13257 127 RLFDEDNTGKISFANLRSVAVE----------LGENIADEEIQEMIN 163 (188)
Q Consensus 127 ~~~D~~~~g~I~~eef~~~l~~----------~~~~~~~~~~~~l~~ 163 (188)
+.||...+.+|+.+++.++.+. .|..+|...+-.++-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~ 56 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIIL 56 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHH
Confidence 4578888999999999888874 145566555555443
No 166
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=65.87 E-value=28 Score=21.24 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=46.3
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh--cCcchHHHHHHHHHhh
Q psy13257 62 GSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM--ADKDSKEEILKAFRLF 129 (188)
Q Consensus 62 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~ 129 (188)
..||..||...-+..+..++...+..+...+....-.-.+=++-..++.... ..+.....+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999888655545555455444443322 1344455666666554
No 167
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=62.40 E-value=21 Score=18.64 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCC--CCCccCHHHHHHHHHH
Q psy13257 45 QVADIQEAFALFDKE--GTGSISTKELKIAMRA 75 (188)
Q Consensus 45 ~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~~ 75 (188)
-+..+..+|.+|... ....++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456778888888532 3568999999988854
No 168
>PLN02230 phosphoinositide phospholipase C 4
Probab=61.48 E-value=60 Score=27.64 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCC---CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHH
Q psy13257 48 DIQEAFALFDKEGTGSISTKELKIAMRALGF---EPKKEEIKKMISEISK-------DNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 48 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~-------~~~~~i~~~ef~~~~~~ 111 (188)
++..+|..+..+ ++.|+.++|..+|..-+. ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 30 ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 30 DVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 466677777443 489999999999988653 2355666666654421 12456999999998764
No 169
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=60.32 E-value=40 Score=21.78 Aligned_cols=41 Identities=5% Similarity=0.210 Sum_probs=33.1
Q ss_pred HHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13257 126 FRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEAD 166 (188)
Q Consensus 126 f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d 166 (188)
|-..-..++..+|.+++..+|...|..+.+..+..+++.+.
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34444557778999999999999999998888888888873
No 170
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=60.21 E-value=22 Score=25.19 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=22.1
Q ss_pred hCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13257 129 FDEDNTGKISFANLRSVAVELGENIADEEIQEMINEAD 166 (188)
Q Consensus 129 ~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d 166 (188)
+..+.+|++..+|+.+.+..-+..++.+++..+...-+
T Consensus 25 L~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ----TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred CccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 35677888888888888877666778888888877643
No 171
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=59.17 E-value=40 Score=20.81 Aligned_cols=62 Identities=16% Similarity=0.373 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHc-------C----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMRAL-------G----FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
+.++.+|..+ .|++|.++...|..+|..+ | ....+..++..|... .....|+-++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4577888887 7789999999988877652 1 112344455555543 23445666666665543
No 172
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=58.74 E-value=31 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=18.7
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13257 131 EDNTGKISFANLRSVAVELGENIADEEIQEMINE 164 (188)
Q Consensus 131 ~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~ 164 (188)
.|.+|++..+++.+.++.-+..++.+.+.++...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 3455666666666655543444565555555444
No 173
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=56.86 E-value=33 Score=26.85 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=30.7
Q ss_pred CCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 133 NTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 133 ~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
..|.||+||-...++.+-...++..++.+++.++ ||-+||..++
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 3678888888777777655556677777777774 5666776654
No 174
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=56.44 E-value=71 Score=22.84 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=6.5
Q ss_pred CCcccHHHHHHHHH
Q psy13257 97 SGLLTYKDFLHLVT 110 (188)
Q Consensus 97 ~~~i~~~ef~~~~~ 110 (188)
||.|+.+++..++.
T Consensus 11 DGTITl~Ds~~~it 24 (220)
T COG4359 11 DGTITLNDSNDYIT 24 (220)
T ss_pred CCceEecchhHHHH
Confidence 44444444444443
No 175
>KOG2301|consensus
Probab=56.28 E-value=8.3 Score=36.38 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy13257 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEP----KKEEIKKMISEISKDNSGLLTYKDFLHLVTQ 111 (188)
Q Consensus 40 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 111 (188)
.+++.+++.+.++|.++|++..|.|...++..+++.+.-++ ..+. +.+--.+-...++.|++.+.+.++..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 68999999999999999999999999999999998864332 1111 22222223346788888887776654
No 176
>KOG4403|consensus
Probab=55.55 E-value=71 Score=25.91 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=16.5
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy13257 47 ADIQEAFALFDKEGTGSISTKELKIAMR 74 (188)
Q Consensus 47 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~ 74 (188)
+.++.+-+.+|-|.+|.|+.+|-..+|+
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHH
Confidence 4455555566666666666666555553
No 177
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=55.46 E-value=53 Score=21.09 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=37.2
Q ss_pred HHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13257 126 FRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLH 180 (188)
Q Consensus 126 f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 180 (188)
|-..-..++..+|.+++..+|...|..+.+..+..+++.+.. .+.++.+.
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa 56 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIA 56 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 334445577789999999999999998888888888887732 34455554
No 178
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=54.70 E-value=19 Score=20.44 Aligned_cols=26 Identities=8% Similarity=0.354 Sum_probs=20.0
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHH
Q psy13257 136 KISFANLRSVAVELGENIADEEIQEM 161 (188)
Q Consensus 136 ~I~~eef~~~l~~~~~~~~~~~~~~l 161 (188)
.|+.++|..+|+.....++..+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 57888999999888888888877653
No 179
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=54.41 E-value=48 Score=21.89 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCC--CCceeHHHHHHHHHHhC-------CCCC-----------HHHHHHHHHhhCCCCCCcccHHHHH
Q psy13257 120 EEILKAFRLFDEDN--TGKISFANLRSVAVELG-------ENIA-----------DEEIQEMINEADKDGDGEINEEEFL 179 (188)
Q Consensus 120 ~~~~~~f~~~D~~~--~g~I~~eef~~~l~~~~-------~~~~-----------~~~~~~l~~~~d~~~~g~i~~~eF~ 179 (188)
..+..+|+...... +..|+..++..++..+- .... +-.+..++..||.+.+|.|+.-.|.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 34556666664433 46799999888877642 1111 1234668889999999999999887
Q ss_pred HHHH
Q psy13257 180 HIMK 183 (188)
Q Consensus 180 ~~l~ 183 (188)
..+.
T Consensus 121 vaL~ 124 (127)
T PF09068_consen 121 VALI 124 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 180
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=54.30 E-value=37 Score=19.12 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy13257 61 TGSISTKELKIAMRALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 61 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 92 (188)
+..+|.+|+...+..++-.++..++-.+|..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34677888888888887777777777776654
No 181
>PLN02223 phosphoinositide phospholipase C
Probab=53.52 E-value=1.3e+02 Score=25.41 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc---C--CCCCHHHHHHHHHhhCCCC--------CCcccHHHHH
Q psy13257 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRAL---G--FEPKKEEIKKMISEISKDN--------SGLLTYKDFL 106 (188)
Q Consensus 40 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~---~--~~~~~~~~~~l~~~~d~~~--------~~~i~~~ef~ 106 (188)
..++++ +..+|..+ ..++|.++...+..+|..+ + ...+.++++.++..+-... .+.++++.|.
T Consensus 12 ~~~p~~---v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~ 87 (537)
T PLN02223 12 ANQPDL---ILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLN 87 (537)
T ss_pred CCCcHH---HHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHH
Confidence 335555 44555555 2568899999999988443 2 2455666776666553221 2569999999
Q ss_pred HHHHH
Q psy13257 107 HLVTQ 111 (188)
Q Consensus 107 ~~~~~ 111 (188)
.++..
T Consensus 88 ~~L~s 92 (537)
T PLN02223 88 EFLFS 92 (537)
T ss_pred HHhcC
Confidence 98764
No 182
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=52.62 E-value=30 Score=19.81 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC
Q psy13257 60 GTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDN 96 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 96 (188)
.++.++..++...|..-|..++...++..++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4678999999999988888899999999999887654
No 183
>KOG4403|consensus
Probab=52.19 E-value=29 Score=28.01 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy13257 80 PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRS 144 (188)
Q Consensus 80 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~ 144 (188)
++.+.++.+-+.+|.|.+|.|+.+|=-.++..-++..+...+-.+.|.. .+..|+.+|+=.
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWe 125 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWE 125 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHH
Confidence 4455566666666666666666666555555544444333333334433 234566666533
No 184
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=51.94 E-value=34 Score=22.92 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCCceeHHHHHHHHHHhC---------CCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHH
Q psy13257 133 NTGKISFANLRSVAVELG---------ENIADEEIQEMINEADKDGDGE-INEEEFLHI 181 (188)
Q Consensus 133 ~~g~I~~eef~~~l~~~~---------~~~~~~~~~~l~~~~d~~~~g~-i~~~eF~~~ 181 (188)
|+..||.+||.+++..-. ..+.+++++.+.+.+.....+. ++..|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 677899999999998642 2467899999999998766664 998887654
No 185
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=51.12 E-value=16 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=14.8
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13257 134 TGKISFANLRSVAVELGENIADEEIQEMINEA 165 (188)
Q Consensus 134 ~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~ 165 (188)
.|+||.+++..+|.. ..++.+.+..++..+
T Consensus 19 ~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPE--DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S---S---HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCc--cCCCHHHHHHHHHHH
Confidence 566666666666653 225566666666655
No 186
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=50.93 E-value=60 Score=20.33 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=16.0
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy13257 64 ISTKELKIAMRALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 64 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 92 (188)
+...+..-+|..+...++++++..+...+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 45555555555566666666666655555
No 187
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.91 E-value=72 Score=21.58 Aligned_cols=89 Identities=13% Similarity=0.238 Sum_probs=56.9
Q ss_pred HHHHhhcCCCCCccCHHHHHH---HHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHH
Q psy13257 51 EAFALFDKEGTGSISTKELKI---AMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFR 127 (188)
Q Consensus 51 ~~f~~~d~~~~g~i~~~e~~~---~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 127 (188)
-+|..+.. ||.++..|... ++.. ...++..++..++.....-+.-.+++..|...+...+......+.+..+|+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mwe 110 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWE 110 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56666544 67788877544 4433 234667788888887766667778888888888765533334445666677
Q ss_pred hhCCCCCCceeHHHHHH
Q psy13257 128 LFDEDNTGKISFANLRS 144 (188)
Q Consensus 128 ~~D~~~~g~I~~eef~~ 144 (188)
..-. +|.++.-|-.-
T Consensus 111 Ia~A--Dg~l~e~Ed~v 125 (148)
T COG4103 111 IAYA--DGELDESEDHV 125 (148)
T ss_pred HHHc--cccccHHHHHH
Confidence 7654 45666666433
No 188
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=49.90 E-value=50 Score=19.15 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q psy13257 64 ISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDF 105 (188)
Q Consensus 64 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef 105 (188)
++-.++..++...+..++..++..+++.-+..+-..++=..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L 55 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLL 55 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHH
Confidence 445578888888888888888888888755444333433333
No 189
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=49.86 E-value=64 Score=20.33 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC---CCCCCcccHHHHHHHHHhc
Q psy13257 122 ILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEAD---KDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 122 ~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d---~~~~g~i~~~eF~~~l~~~ 185 (188)
+..-|..+-. +|.+.+.+|...+ |..-+.+-..+||..+. .-....|+.+|...++.++
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 3344555554 6777777776644 43334555555555442 1113467777776666544
No 190
>KOG3449|consensus
Probab=48.13 E-value=72 Score=20.46 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=40.8
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy13257 51 EAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHL 108 (188)
Q Consensus 51 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 108 (188)
..|-.++.-++-..+..++..+|...|.....+.++.++..+. |+ +.+|++.-
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 4455566667778899999999999999999999999998872 22 56676653
No 191
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.73 E-value=56 Score=19.08 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=28.1
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy13257 61 TGSISTKELKIAMRALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 61 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 92 (188)
+..|+.+-++.++...|..+++..++.+++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 67899999999999999999999998888765
No 192
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=47.27 E-value=67 Score=19.84 Aligned_cols=81 Identities=12% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCCccCHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhc--CcchHHHHHHHHHhhCCCCCCc
Q psy13257 60 GTGSISTKELKIAMRALG-FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMA--DKDSKEEILKAFRLFDEDNTGK 136 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~ 136 (188)
.||.++..|...+-..+. ..........+...+........++.+|...+..... +.....-+..+|..--. ||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCC
Confidence 478888888654433321 1233333333433333222333677888877766431 11122234445555433 466
Q ss_pred eeHHHH
Q psy13257 137 ISFANL 142 (188)
Q Consensus 137 I~~eef 142 (188)
++..|-
T Consensus 90 ~~~~E~ 95 (106)
T cd07316 90 LSEAER 95 (106)
T ss_pred CCHHHH
Confidence 766664
No 193
>KOG4301|consensus
Probab=46.55 E-value=41 Score=26.32 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=30.6
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 125 AFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
....+|..+.|.+++--....|...-..--.+.+..||... .+..|-+.+-.|.+++.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHH
Confidence 34456666666666665555555443333344556666655 44455554444444443
No 194
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=45.42 E-value=40 Score=19.67 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=26.2
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q psy13257 121 EILKAFRLFDEDNTGKISFANLRSVAVEL----GENIADEEIQEMINEA 165 (188)
Q Consensus 121 ~~~~~f~~~D~~~~g~I~~eef~~~l~~~----~~~~~~~~~~~l~~~~ 165 (188)
.+..+...++....--+-.++++.++..+ |...+++.++.||+.|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 45555555554444445556677766654 5667888889988765
No 195
>KOG2301|consensus
Probab=45.11 E-value=17 Score=34.55 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=45.4
Q ss_pred chHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIA----DEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 117 ~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
+.-+...++|+.+|++..|.|...++..+++.+..++. ... +.+-..+-...++.|++.+-+-.|.+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 34567888999999999999999999999998753322 111 22333344456677777766655544
No 196
>KOG4004|consensus
Probab=44.53 E-value=12 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=12.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHH
Q psy13257 158 IQEMINEADKDGDGEINEEEFLH 180 (188)
Q Consensus 158 ~~~l~~~~d~~~~g~i~~~eF~~ 180 (188)
+..+|+..|.|+||.|+.+||..
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhc
Confidence 34455555555555555555543
No 197
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=44.20 E-value=11 Score=18.32 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=7.0
Q ss_pred CcccHHHHHHHHHh
Q psy13257 171 GEINEEEFLHIMKK 184 (188)
Q Consensus 171 g~i~~~eF~~~l~~ 184 (188)
|.|++++++++..+
T Consensus 3 ~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 3 GTISKEEYLDMASR 16 (33)
T ss_pred ceecHHHHHHHHHH
Confidence 44555555554443
No 198
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=44.00 E-value=63 Score=18.56 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.8
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy13257 61 TGSISTKELKIAMRALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 61 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 92 (188)
+..|+.+.++.++..+|..+++..++.+.+..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 66899999999999999999999999988765
No 199
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=43.97 E-value=77 Score=19.62 Aligned_cols=77 Identities=12% Similarity=0.245 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCccc---HHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHH
Q psy13257 67 KELKIAMRALGFEPKKEEIKKMISEISKDNSGLLT---YKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLR 143 (188)
Q Consensus 67 ~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~ 143 (188)
.+...........++...++++++..... +|+ .+++...+..+. .+....+...-...+--+|..+|+.
T Consensus 7 ~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~~-----~~i~~~A~~~A~ha~RKTV~~~DI~ 78 (91)
T COG2036 7 KEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEYL-----EEIAEDAVELAEHAKRKTVKAEDIK 78 (91)
T ss_pred HHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCeecHHHHH
Confidence 34444444444455556666666665433 333 233333332221 2234445555556677788888888
Q ss_pred HHHHHhCC
Q psy13257 144 SVAVELGE 151 (188)
Q Consensus 144 ~~l~~~~~ 151 (188)
..++..+.
T Consensus 79 la~~~~~~ 86 (91)
T COG2036 79 LALKRLGR 86 (91)
T ss_pred HHHHHhcc
Confidence 88887663
No 200
>KOG1954|consensus
Probab=43.39 E-value=43 Score=26.82 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q psy13257 122 ILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFL 179 (188)
Q Consensus 122 ~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~ 179 (188)
...+|..+.+ -+|.|+...-+.-+- ...++...+-.+|+..|.|.||.++-+||.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 4566777755 468888776655543 345778889999999999999999999997
No 201
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=42.84 E-value=92 Score=20.15 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=29.6
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13257 131 EDNTGKISFANLRSVAVELGENIADEEIQEMINEA 165 (188)
Q Consensus 131 ~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~ 165 (188)
..++..+|.+++..+|...|..+.+..+..+++.+
T Consensus 12 l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 12 LGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred hcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 34666799999999999999888888888888877
No 202
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=41.51 E-value=86 Score=19.76 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=30.1
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHH---HHHHHhhCCCCCCcccHHHHHHHHHhcCC
Q psy13257 135 GKISFANLRSVAVELGENIADEEI---QEMINEADKDGDGEINEEEFLHIMKKTSL 187 (188)
Q Consensus 135 g~I~~eef~~~l~~~~~~~~~~~~---~~l~~~~d~~~~g~i~~~eF~~~l~~~~~ 187 (188)
-.++.+|+..++...| ..+.+ ...++.+..+....++-++.+..|.++|.
T Consensus 34 ~p~s~~eL~~~l~~~g---~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~ 86 (105)
T cd03035 34 DGLDAATLERWLAKVG---WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPS 86 (105)
T ss_pred CCCCHHHHHHHHHHhC---hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcC
Confidence 3577888888887766 12222 12344444332245778888888888764
No 203
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=41.04 E-value=2.1e+02 Score=23.86 Aligned_cols=108 Identities=14% Similarity=0.194 Sum_probs=60.4
Q ss_pred HHHHhhcCCC----CCccCHHHHHHHHHHcCC----------------------------CCC-HHHHHHHHHhhCCCCC
Q psy13257 51 EAFALFDKEG----TGSISTKELKIAMRALGF----------------------------EPK-KEEIKKMISEISKDNS 97 (188)
Q Consensus 51 ~~f~~~d~~~----~g~i~~~e~~~~l~~~~~----------------------------~~~-~~~~~~l~~~~d~~~~ 97 (188)
++|..++..+ +|.|+..++..+...... .++ .+.++++++.-| .--
T Consensus 303 ~lf~AigsqgdGkcgGKI~AkDls~fs~~H~qva~y~~~qA~~Y~qnYipSD~~~~~~psvMT~nDA~RELYrYSd-yLP 381 (624)
T PF05819_consen 303 ALFYAIGSQGDGKCGGKIKAKDLSKFSSHHPQVAEYAEQQAESYTQNYIPSDSKDNAQPSVMTENDAMRELYRYSD-YLP 381 (624)
T ss_pred HHHHHhccCCCCCcCCeechhhHHHHHhcChHHHHHHHHHhhhhhhccCCCCCCCCCCCcccchhHHHHHHHHhhh-ccc
Confidence 4677776654 578988888766432100 011 244566666543 345
Q ss_pred CcccHHHHHHHHHHhhcCcchH-H------HHH---HHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHH
Q psy13257 98 GLLTYKDFLHLVTQKMADKDSK-E------EIL---KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQE 160 (188)
Q Consensus 98 ~~i~~~ef~~~~~~~~~~~~~~-~------~~~---~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~ 160 (188)
+.++.+.|..++......+.+. + .++ ..|+.+-.+.++.|+.++|.+...+ ..++|..|++.
T Consensus 382 K~L~~~~f~~IVdG~s~tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass-~m~LT~~ElkT 453 (624)
T PF05819_consen 382 KNLSLEDFKQIVDGDSKTGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASS-SMHLTAPELKT 453 (624)
T ss_pred cccCHHHHHhHhcCccccCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHh-hcccChHHHHH
Confidence 6788888888876432222111 1 111 1244443455789999999887654 33455555443
No 204
>KOG0039|consensus
Probab=40.97 E-value=97 Score=26.74 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=51.3
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcC-------cchHHHHHHHHHhhCCCCCCc
Q psy13257 64 ISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMAD-------KDSKEEILKAFRLFDEDNTGK 136 (188)
Q Consensus 64 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~-------~~~~~~~~~~f~~~D~~~~g~ 136 (188)
++.+|+. ......++.++-++..+|. .+|.++-+++..+....... ....+....+++..|.+..|+
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 6666665 2222345556666666665 67777777777665543221 223445566888999999999
Q ss_pred eeHHHHHHHHHH
Q psy13257 137 ISFANLRSVAVE 148 (188)
Q Consensus 137 I~~eef~~~l~~ 148 (188)
+..+++..++..
T Consensus 78 ~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 78 ITNEDLEILLLQ 89 (646)
T ss_pred eeecchhHHHHh
Confidence 999998887764
No 205
>KOG2871|consensus
Probab=40.50 E-value=47 Score=26.35 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHH-HHhhCCCCCCcccHHHHHHHHH
Q psy13257 46 VADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKM-ISEISKDNSGLLTYKDFLHLVT 110 (188)
Q Consensus 46 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l-~~~~d~~~~~~i~~~ef~~~~~ 110 (188)
-..+++.|..+|+.++|+|+..-+...+..+....++.+.-.+ -..++..+-|.|-.+.|+..+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 4678999999999999999999999888887755554443333 2334444555555555554443
No 206
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=40.15 E-value=62 Score=17.39 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMIS 90 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 90 (188)
...++++++..|...|.. +...+..+...+-..+| ++...+..+|.
T Consensus 4 r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 457889999999999985 56788888777777765 45666666664
No 207
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=39.60 E-value=1e+02 Score=19.66 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=32.5
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 137 ISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 137 I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
||.+++..+|...|..++++.+..+++.+. ..+.++.+...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 999999999999999999999998888872 23555655443
No 208
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=39.04 E-value=1.1e+02 Score=20.08 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q psy13257 103 KDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL 149 (188)
Q Consensus 103 ~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~ 149 (188)
+.|...+..+....-..+.+..+|...|.- .+|..+|.-++...
T Consensus 37 ~Kl~~Il~mFl~~eid~e~~y~l~~~~d~~---~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 37 DKLIKILKMFLNDEIDVEDMYNLFGAVDGL---KLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhcccHh---hcCHHHHHHHHHHH
Confidence 344444444444444444444444444422 45666666555543
No 209
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=38.94 E-value=1.3e+02 Score=20.93 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCH-----HHHHHHHHhhCCC-----CC------------
Q psy13257 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK-----EEIKKMISEISKD-----NS------------ 97 (188)
Q Consensus 40 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~-----~~------------ 97 (188)
.++++--.++.+.|..+-.+ ++-+...++..++..|.++..- +-+..++..+... +.
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~cfT~DI~~cidyyY~~i~~~~~~i~~tn~kq~it~~mi~ 85 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPKCFTKDINECIDYYYKFIRSKDVCIEGTNPKQDITLQMIH 85 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCChHHHHhHHHHHHHHHHhcccCceeecCcchhHHHHHHHHH
Confidence 56666668888999888543 6789999999999998776432 2223334433221 11
Q ss_pred ---------------CcccHHHHHHHHHHhhcCcchHHHHHHHHHhh
Q psy13257 98 ---------------GLLTYKDFLHLVTQKMADKDSKEEILKAFRLF 129 (188)
Q Consensus 98 ---------------~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 129 (188)
.-|+|+-.+....++....+.++.+...|+.+
T Consensus 86 a~t~s~~~~~~~di~DIVDfdKLl~~t~~LL~FmdN~~~Id~~W~L~ 132 (170)
T PF08730_consen 86 AYTISSSIKNPDDIIDIVDFDKLLRNTYRLLIFMDNEEHIDESWKLF 132 (170)
T ss_pred HhhccccccccccccceeeHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 34667777776666666666666666666655
No 210
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=38.80 E-value=65 Score=21.97 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy13257 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRA 75 (188)
Q Consensus 39 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 75 (188)
.......+..+.......|.++.++||..|++.++..
T Consensus 61 W~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 61 WHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 3445566777888888888888888999998887644
No 211
>KOG3077|consensus
Probab=38.78 E-value=1.7e+02 Score=22.07 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhh-cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 45 QVADIQEAFALF-DKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 45 ~~~~l~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
....+...|..+ |+.-+..|-.+-+..++..+|..+.+-.+-.+-..++...-+..+-++|+..+..+
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 345566667665 44444678888888899999988777666666666776677889999999976654
No 212
>KOG1954|consensus
Probab=38.73 E-value=93 Score=25.04 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy13257 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHL 108 (188)
Q Consensus 48 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 108 (188)
-..++|..+.+- +|.++-..-+..+-. ..++...+.++|+..|.+.+|.++=+||.-.
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 356777776543 778887766554432 3466778889999999999999999998654
No 213
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=38.55 E-value=1.4e+02 Score=20.99 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHH----HHHHhCCCCCHHHHHHHHHhhCCCC
Q psy13257 96 NSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRS----VAVELGENIADEEIQEMINEADKDG 169 (188)
Q Consensus 96 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~----~l~~~~~~~~~~~~~~l~~~~d~~~ 169 (188)
..|.++..+|..-+...+. ...|+.+.|-. +|.++| +.+.+++.-++.+..|.
T Consensus 33 a~Gklsm~dFsk~I~~Yme-------------------eNNISqeKf~niQkk~mERYG--fd~~~iE~q~K~~Gid~ 89 (186)
T PF12983_consen 33 AEGKLSMADFSKKIMEYME-------------------ENNISQEKFLNIQKKFMERYG--FDPSEIEKQMKSMGIDM 89 (186)
T ss_pred hcCcccHHHHHHHHHHHHH-------------------HcCCcHHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCc
Confidence 4567777777766555442 23566666644 344555 45666777777765554
No 214
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=37.54 E-value=80 Score=19.55 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=37.6
Q ss_pred CCCccCHHHHHHHHHHcCC-----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCC
Q psy13257 60 GTGSISTKELKIAMRALGF-----EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNT 134 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~~~-----~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 134 (188)
.||.++..|...+...+.. ......+..++...-..- ...+..++...+...........-+..++..... +
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--D 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--D 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--c
Confidence 3788888887776655431 223344444444332110 0234455555555443222222234444555543 3
Q ss_pred CceeHHH
Q psy13257 135 GKISFAN 141 (188)
Q Consensus 135 g~I~~ee 141 (188)
|.++..|
T Consensus 92 G~~~~~E 98 (111)
T cd07176 92 GEVDPEE 98 (111)
T ss_pred CCCCHHH
Confidence 5565554
No 215
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=37.29 E-value=1.9e+02 Score=22.28 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=47.2
Q ss_pred HHHHHHHHhhCCC---------CCCceeHHHHHHHHHHh---------------CCCCCHHHHHHHHHhhCCC-----CC
Q psy13257 120 EEILKAFRLFDED---------NTGKISFANLRSVAVEL---------------GENIADEEIQEMINEADKD-----GD 170 (188)
Q Consensus 120 ~~~~~~f~~~D~~---------~~g~I~~eef~~~l~~~---------------~~~~~~~~~~~l~~~~d~~-----~~ 170 (188)
..+.++|..|++. ++-.|+..+|.+++-.+ ...+++..+..+.+.+-.| .+
T Consensus 192 ~~~leLf~~yn~~khl~lm~~L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~ 271 (323)
T PF12987_consen 192 RKVLELFQNYNPAKHLHLMQTLGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKG 271 (323)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCC
Confidence 3455566666654 57789999999987653 1235778888888876433 26
Q ss_pred CcccHHHHHHHHHhc
Q psy13257 171 GEINEEEFLHIMKKT 185 (188)
Q Consensus 171 g~i~~~eF~~~l~~~ 185 (188)
+.|+.+.|..++...
T Consensus 272 ~~Is~W~~ynLlT~A 286 (323)
T PF12987_consen 272 GEISMWNFYNLLTGA 286 (323)
T ss_pred CcccHHHHHHHHhcc
Confidence 789999999988753
No 216
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.71 E-value=25 Score=24.88 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHH
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEI 158 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~ 158 (188)
.+.++++|..||+++=-..+.+++.++|...|+.-....+
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI 93 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKI 93 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHH
Confidence 4578999999999999999999999999987754443333
No 217
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=36.63 E-value=1.3e+02 Score=20.53 Aligned_cols=28 Identities=14% Similarity=0.466 Sum_probs=15.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy13257 85 IKKMISEISKDNSGLLTYKDFLHLVTQK 112 (188)
Q Consensus 85 ~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 112 (188)
+..++..-+.+.++.|++..|..+++..
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~ 112 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPK 112 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHH
Confidence 3444333223345667777777777654
No 218
>PRK00523 hypothetical protein; Provisional
Probab=36.33 E-value=93 Score=18.32 Aligned_cols=32 Identities=16% Similarity=0.413 Sum_probs=28.7
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy13257 61 TGSISTKELKIAMRALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 61 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 92 (188)
+-.|+.+-++..+..+|..+++..++.+.+..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 67899999999999999999999999888776
No 219
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=35.49 E-value=57 Score=19.21 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=5.9
Q ss_pred CCceeHHHHHHHH
Q psy13257 134 TGKISFANLRSVA 146 (188)
Q Consensus 134 ~g~I~~eef~~~l 146 (188)
.|.++.+||..++
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 3444444444444
No 220
>COG5562 Phage envelope protein [General function prediction only]
Probab=34.66 E-value=31 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=12.7
Q ss_pred CCCCCCcccHHHHHHHHHhc
Q psy13257 166 DKDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 166 d~~~~g~i~~~eF~~~l~~~ 185 (188)
..+..|+.+|++|++.|-+.
T Consensus 82 ~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 82 RRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHhcCCccHHHHHHHHHhC
Confidence 34456777777777666554
No 221
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=33.72 E-value=80 Score=16.83 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISE 91 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 91 (188)
...+++..+..|+..|.. +...+..+...+-..+| ++...+..+|..
T Consensus 4 r~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 4 RTRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CCcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 346788889999999986 55888888888877775 566777777653
No 222
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=33.55 E-value=1.2e+02 Score=18.60 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.4
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy13257 135 GKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182 (188)
Q Consensus 135 g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l 182 (188)
-.|.-.+|+..|...-......+...+-..+|...++.||-=||--+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 579999999999987655555666778888999999999988876544
No 223
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=33.00 E-value=1e+02 Score=18.56 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=25.1
Q ss_pred HhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy13257 148 ELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183 (188)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~ 183 (188)
.-|-.+++...+.+-+.++......|+++|.+.+..
T Consensus 41 eRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 41 ERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445567777777776666666666788888887654
No 224
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=32.97 E-value=75 Score=21.39 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=22.2
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q psy13257 137 ISFANLRSVAVELGENIADEEIQEMINEADK 167 (188)
Q Consensus 137 I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~ 167 (188)
.+.++++.+...+...+|++++..+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3677777777666666788888887777754
No 225
>KOG4301|consensus
Probab=32.86 E-value=2.5e+02 Score=22.23 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=85.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCC---CCCccCHHHHHHH----HHHcCCCC------CH-HH----HHHHHHhhCCCCC
Q psy13257 36 GPKFELTPEQVADIQEAFALFDKE---GTGSISTKELKIA----MRALGFEP------KK-EE----IKKMISEISKDNS 97 (188)
Q Consensus 36 ~~~~~~~~~~~~~l~~~f~~~d~~---~~g~i~~~e~~~~----l~~~~~~~------~~-~~----~~~l~~~~d~~~~ 97 (188)
..++++.-.+|..+.+.|+.-.-| .+-.|...-+... +..+...+ .. .- +..++..+|..+.
T Consensus 45 qkk~~~hlvdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ds~~~ 124 (434)
T KOG4301|consen 45 QKKCNLHLVDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAEDSEGQ 124 (434)
T ss_pred eccCCchhHHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcCccCC
Confidence 356688888888888888764322 2344444433332 22222211 11 11 2456667788888
Q ss_pred CcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhC-----------CCCCHHHHHHHHHhhC
Q psy13257 98 GLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG-----------ENIADEEIQEMINEAD 166 (188)
Q Consensus 98 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~-----------~~~~~~~~~~l~~~~d 166 (188)
|.++.-.....+...+ .+...++++.+|.... |++|.+..-.+.++++..- ...++..++..|
T Consensus 125 g~~~vfavkialatlc-~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf---- 198 (434)
T KOG4301|consen 125 GKQQVFAVKIALATLC-GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCF---- 198 (434)
T ss_pred CCceeecchhhhhhhc-cchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHH----
Confidence 8887666655555544 4446778999999985 5788888888888887641 122333333322
Q ss_pred CCCCCcccHHHHHHHHHhc
Q psy13257 167 KDGDGEINEEEFLHIMKKT 185 (188)
Q Consensus 167 ~~~~g~i~~~eF~~~l~~~ 185 (188)
-.+.+++.+.|++.|...
T Consensus 199 -~qqrKv~Ln~fldtl~sd 216 (434)
T KOG4301|consen 199 -LQQRKVELNQFLDTLMSD 216 (434)
T ss_pred -HHHHHHHHHHHHHHHhcC
Confidence 235577788887776654
No 226
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=32.68 E-value=95 Score=17.36 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCc----cCHHHHHHHHHHcCC
Q psy13257 37 PKFELTPEQVADIQEAFALFDKEGTGS----ISTKELKIAMRALGF 78 (188)
Q Consensus 37 ~~~~~~~~~~~~l~~~f~~~d~~~~g~----i~~~e~~~~l~~~~~ 78 (188)
....++++++..|...|.. .|. .+..+...+...+|+
T Consensus 4 ~RT~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 4 RRTKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred CCCCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCC
Confidence 3468899999999999986 445 777777777777764
No 227
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.08 E-value=74 Score=16.73 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=16.2
Q ss_pred eHHHHHHHHHHhCCCCCHHHH
Q psy13257 138 SFANLRSVAVELGENIADEEI 158 (188)
Q Consensus 138 ~~eef~~~l~~~~~~~~~~~~ 158 (188)
+.+++..+.+..|..+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 567788888888888887664
No 228
>KOG4004|consensus
Probab=31.65 E-value=32 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHH
Q psy13257 118 SKEEILKAFRLFDEDNTGKISFANLR 143 (188)
Q Consensus 118 ~~~~~~~~f~~~D~~~~g~I~~eef~ 143 (188)
.+..+...|+..|.+++|+|+..|..
T Consensus 220 me~c~~~f~e~cd~~nd~~ial~ew~ 245 (259)
T KOG4004|consen 220 MEHCTTRFFETCDLDNDKYIALDEWA 245 (259)
T ss_pred HHhhchhhhhcccCCCCCceeHHHhh
Confidence 45678889999999999999998864
No 229
>KOG4629|consensus
Probab=31.48 E-value=1.2e+02 Score=26.50 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=43.7
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 120 ~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
-..+.+|+..-+.+.-.+..+++..+ +.+++.+.++..++...++.|+++.|......
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 35677888888888777777776654 35777888888888777777999999876543
No 230
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=31.30 E-value=1.2e+02 Score=18.56 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=15.2
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHH
Q psy13257 137 ISFANLRSVAVELGENIADEEIQEM 161 (188)
Q Consensus 137 I~~eef~~~l~~~~~~~~~~~~~~l 161 (188)
|+.+++..+.+-....++++++..+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~ 25 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESF 25 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4566666666655666676665443
No 231
>PHA02105 hypothetical protein
Probab=31.25 E-value=1e+02 Score=17.22 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=26.2
Q ss_pred eeHHHHHHHHHHh---CCCCCHHHHHHHHHhhCCCCCC--cccHHHHHHHHHhcC
Q psy13257 137 ISFANLRSVAVEL---GENIADEEIQEMINEADKDGDG--EINEEEFLHIMKKTS 186 (188)
Q Consensus 137 I~~eef~~~l~~~---~~~~~~~~~~~l~~~~d~~~~g--~i~~~eF~~~l~~~~ 186 (188)
++++||..++..- ..++..+-++.+-.-+....-. .++|+||.++|--+|
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip 59 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIP 59 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccccc
Confidence 5666666665532 2234444445444444333322 468888877664443
No 232
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=31.22 E-value=1.3e+02 Score=18.38 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCC
Q psy13257 79 EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN 152 (188)
Q Consensus 79 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~ 152 (188)
.++...+.++.+......-..--|+|....+.... .+-++.+-..-..-+--+|+.+|+..+++..|.+
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l-----~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYL-----EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 35566666666655332222222666666555443 3344444444444555678888888888877743
No 233
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=30.92 E-value=1.9e+02 Score=20.36 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCCCCCceeHHHHHHHHHHh--CCCCCHHHHHHHHHhhC
Q psy13257 130 DEDNTGKISFANLRSVAVEL--GENIADEEIQEMINEAD 166 (188)
Q Consensus 130 D~~~~g~I~~eef~~~l~~~--~~~~~~~~~~~l~~~~d 166 (188)
.++....++.++|.+.++.. |..++++.+..+++.+.
T Consensus 145 n~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 183 (187)
T smart00222 145 NPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIK 183 (187)
T ss_pred CCccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 44445567777777777655 35667777777776653
No 234
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=30.15 E-value=1.6e+02 Score=19.08 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy13257 52 AFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107 (188)
Q Consensus 52 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 107 (188)
.|......++..+|..++..+|...|.......+..+++.+.. .+.++++.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3444444566678999999999999988888888888887732 45666655
No 235
>PTZ00015 histone H4; Provisional
Probab=29.90 E-value=1.5e+02 Score=18.80 Aligned_cols=68 Identities=6% Similarity=0.040 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCC
Q psy13257 79 EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE 151 (188)
Q Consensus 79 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~ 151 (188)
.++...+.++.+......-..--|+|+...+..+. .+-++.+....+.-+--+|+.+|+..+++..|.
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l-----~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~ 97 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFL-----ENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR 97 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 34555555665554333222233555555554433 223444444444445567888888888877664
No 236
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=29.68 E-value=2e+02 Score=20.05 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy13257 38 KFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMR 74 (188)
Q Consensus 38 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~ 74 (188)
..-.+.+++..+..+-..- +.-++..++..++.
T Consensus 37 yR~Y~~~dl~rL~~I~~lr----~~G~sL~eI~~ll~ 69 (172)
T cd04790 37 YRLYGERDLERLEQICAYR----SAGVSLEDIRSLLQ 69 (172)
T ss_pred CccCCHHHHHHHHHHHHHH----HcCCCHHHHHHHHh
Confidence 3456666666665444321 22356666666554
No 237
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.65 E-value=1.6e+02 Score=19.16 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHH--hCCCCCHHHHHHHHHhh
Q psy13257 119 KEEILKAFRLFDEDNTGKISFANLRSVAVE--LGENIADEEIQEMINEA 165 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I~~eef~~~l~~--~~~~~~~~~~~~l~~~~ 165 (188)
+..+.+.|..+.+.+.++|+.+-+..+..- .|..+..+.+..+.+.+
T Consensus 20 q~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetl 68 (130)
T COG5611 20 QTKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETL 68 (130)
T ss_pred HHHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 336778888888888888887755443332 24455666666666644
No 238
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=29.12 E-value=97 Score=16.90 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=6.0
Q ss_pred CCceeHHHHHHHH
Q psy13257 134 TGKISFANLRSVA 146 (188)
Q Consensus 134 ~g~I~~eef~~~l 146 (188)
.|.|+.+||..=+
T Consensus 21 ~GrL~~~Ef~~R~ 33 (53)
T PF08044_consen 21 EGRLSLDEFDERL 33 (53)
T ss_pred CCCCCHHHHHHHH
Confidence 3445555544433
No 239
>KOG3077|consensus
Probab=29.04 E-value=2.6e+02 Score=21.16 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=10.3
Q ss_pred CCCCCCceeHHHHHHHHHHhC
Q psy13257 130 DEDNTGKISFANLRSVAVELG 150 (188)
Q Consensus 130 D~~~~g~I~~eef~~~l~~~~ 150 (188)
|++.+..|..+-+..++..+|
T Consensus 75 d~~d~~~i~~dgi~~fc~dlg 95 (260)
T KOG3077|consen 75 DPDDDNLIGPDGIEKFCEDLG 95 (260)
T ss_pred CcccccccChHHHHHHHHHhC
Confidence 444444555555555555554
No 240
>PF13551 HTH_29: Winged helix-turn helix
Probab=28.07 E-value=1.5e+02 Score=18.22 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH--HHcCCCCCHHHHHHHHHhh
Q psy13257 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAM--RALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 41 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~~l~~~~ 92 (188)
+++++...+.+.+.....++....+...+...| ...+..++..-+..++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 899999999988887654433578889998855 3457788888888887653
No 241
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=28.03 E-value=1.6e+02 Score=22.21 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=5.9
Q ss_pred CCcccHHHHH
Q psy13257 97 SGLLTYKDFL 106 (188)
Q Consensus 97 ~~~i~~~ef~ 106 (188)
||.|+=.|..
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 5666666555
No 242
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=28.02 E-value=97 Score=19.91 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=7.0
Q ss_pred cccHHHHHHHHHh
Q psy13257 172 EINEEEFLHIMKK 184 (188)
Q Consensus 172 ~i~~~eF~~~l~~ 184 (188)
.++|++|...+++
T Consensus 98 G~s~~~~r~~ir~ 110 (118)
T PF09312_consen 98 GISYEEYREQIRK 110 (118)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3577777766654
No 243
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=27.95 E-value=1.6e+02 Score=24.53 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC-CCcccHHHHHHHHHHhhcCcchHHHHH
Q psy13257 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDN-SGLLTYKDFLHLVTQKMADKDSKEEIL 123 (188)
Q Consensus 45 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-~~~i~~~ef~~~~~~~~~~~~~~~~~~ 123 (188)
..+....+|...-+.+...++..++..++..+|....+.+--..|.. ..+ ...+.|..++....... ...+.++
T Consensus 483 ~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~--~a~s~~gv~yl~v~~~i~sel---~D~d~v~ 557 (612)
T COG5069 483 VLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGD--PAGSVSGVFYLDVLKGIHSEL---VDYDLVT 557 (612)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccC--CccccccchHHHHHHHHhhhh---cChhhhh
Confidence 34556778888777777789999999999999877665444334422 222 22456666666665433 2334555
Q ss_pred HHHHhhC
Q psy13257 124 KAFRLFD 130 (188)
Q Consensus 124 ~~f~~~D 130 (188)
+.|..++
T Consensus 558 ~~~~~f~ 564 (612)
T COG5069 558 RGFTEFD 564 (612)
T ss_pred hhHHHHH
Confidence 5555554
No 244
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.47 E-value=65 Score=15.37 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=6.2
Q ss_pred eeHHHHHHHHH
Q psy13257 137 ISFANLRSVAV 147 (188)
Q Consensus 137 I~~eef~~~l~ 147 (188)
|+.+||+.+|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777777665
No 245
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=27.34 E-value=1.4e+02 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13257 139 FANLRSVAVELGENIADEEIQEMINE 164 (188)
Q Consensus 139 ~eef~~~l~~~~~~~~~~~~~~l~~~ 164 (188)
.+|++.++......+++++++.|+..
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44555555554445555555555543
No 246
>KOG0506|consensus
Probab=27.07 E-value=2.2e+02 Score=23.71 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=43.0
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh---C-----CCCCCcccHHHHHHHHH
Q psy13257 51 EAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEI---S-----KDNSGLLTYKDFLHLVT 110 (188)
Q Consensus 51 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~---d-----~~~~~~i~~~ef~~~~~ 110 (188)
-+|..+....++.++..-|..+|+..|+..++..++.++..+ + ......++.+.|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 356666555579999999999999999998877776666544 2 12346678888877643
No 247
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=26.92 E-value=1.3e+02 Score=21.83 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13257 130 DEDNTGKISFANLRSVAVELGENIADEEIQEMINEA 165 (188)
Q Consensus 130 D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~ 165 (188)
-.|..|+...+++...++..+..++.+.+..+.+.-
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d 88 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATD 88 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcC
Confidence 356788888888888888888888887777766554
No 248
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=26.75 E-value=1.6e+02 Score=17.99 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=5.3
Q ss_pred CCceeHHHHHHH
Q psy13257 134 TGKISFANLRSV 145 (188)
Q Consensus 134 ~g~I~~eef~~~ 145 (188)
+|.|+.|+...+
T Consensus 27 n~~it~E~y~~V 38 (85)
T cd08324 27 NDYFSTEDAEIV 38 (85)
T ss_pred cCCccHHHHHHH
Confidence 344444444443
No 249
>PRK01844 hypothetical protein; Provisional
Probab=26.57 E-value=1.5e+02 Score=17.52 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=28.4
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy13257 61 TGSISTKELKIAMRALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 61 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 92 (188)
+-.|+.+-++..+..+|..+++..++.+.+..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 66899999999999999999999999888776
No 250
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=25.67 E-value=1.9e+02 Score=18.52 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=27.2
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13257 136 KISFANLRSVAVELGENIADEEIQEMINEA 165 (188)
Q Consensus 136 ~I~~eef~~~l~~~~~~~~~~~~~~l~~~~ 165 (188)
.||.+++..+|...|..+.+..+..+.+.+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 799999999999999999988888888877
No 251
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.54 E-value=2.2e+02 Score=22.31 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=44.5
Q ss_pred HHHHH--HHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy13257 69 LKIAM--RALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVA 146 (188)
Q Consensus 69 ~~~~l--~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l 146 (188)
|...+ ..+|.......+...++ .|.++-+|=+..+.... .....+.+..+++.++ ||.+||..++
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d-~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEYD-GEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 44444 34677666666665553 58899999888887743 3334578888999986 7788887765
No 252
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=25.45 E-value=2.6e+02 Score=20.15 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=20.9
Q ss_pred CCcccHHHHHHHHHHhhcCc-----------chHHHHHHHHHhhCCCCCCce
Q psy13257 97 SGLLTYKDFLHLVTQKMADK-----------DSKEEILKAFRLFDEDNTGKI 137 (188)
Q Consensus 97 ~~~i~~~ef~~~~~~~~~~~-----------~~~~~~~~~f~~~D~~~~g~I 137 (188)
.|.++|+.++.-+....... ...+.+...-+.+||+.+|.|
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCce
Confidence 45666666666555443221 122344445555666666554
No 253
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=25.18 E-value=1.4e+02 Score=16.81 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.4
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHH
Q psy13257 137 ISFANLRSVAVELGENIADEEIQEM 161 (188)
Q Consensus 137 I~~eef~~~l~~~~~~~~~~~~~~l 161 (188)
.+.+++..+.+..|..+|.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4478899999999999998888764
No 254
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=25.04 E-value=1.7e+02 Score=17.84 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=16.9
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHH
Q psy13257 137 ISFANLRSVAVELGENIADEEIQEM 161 (188)
Q Consensus 137 I~~eef~~~l~~~~~~~~~~~~~~l 161 (188)
|+.+++..+.+-....++++++..+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~ 27 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKF 27 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 6677777777766667777665444
No 255
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.67 E-value=1.2e+02 Score=19.67 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13257 138 SFANLRSVAVELGENIADEEIQEMINEA 165 (188)
Q Consensus 138 ~~eef~~~l~~~~~~~~~~~~~~l~~~~ 165 (188)
+..|++.++...+..++.++++.|+.-.
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 5667888888777777888888777654
No 256
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.52 E-value=2.2e+02 Score=18.93 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q psy13257 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169 (188)
Q Consensus 120 ~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~ 169 (188)
+.+..+-+.+.-.+-..-+.++=..+|++-| ++++||+.++.......
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 3445555555444444455666677777655 88888888888775444
No 257
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=24.31 E-value=1.9e+02 Score=18.88 Aligned_cols=31 Identities=13% Similarity=0.452 Sum_probs=17.3
Q ss_pred CCceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13257 134 TGKISFANLRSVAVELGENIADEEIQEMINE 164 (188)
Q Consensus 134 ~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~ 164 (188)
.|.++.+++..-+..-+..++..++..++..
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~ 56 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNA 56 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566666665555444555666555554443
No 258
>KOG4286|consensus
Probab=24.14 E-value=1.5e+02 Score=26.07 Aligned_cols=98 Identities=6% Similarity=0.095 Sum_probs=60.7
Q ss_pred CHHHHHHHHHhhCCCC-CCcccHHHHHHHHHHhh------------cCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13257 81 KKEEIKKMISEISKDN-SGLLTYKDFLHLVTQKM------------ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAV 147 (188)
Q Consensus 81 ~~~~~~~l~~~~d~~~-~~~i~~~ef~~~~~~~~------------~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~ 147 (188)
+-.-+..+|...+..+ +...+....+..+.... .+....-.+..+++.||+..+|.|..-+|+-.+.
T Consensus 418 ~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i 497 (966)
T KOG4286|consen 418 SLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII 497 (966)
T ss_pred cHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH
Confidence 4445566666665443 33445555444433211 0111223467789999999999999999988777
Q ss_pred HhCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q psy13257 148 ELGENIADEEIQEMINEADKDGDGEINEEEFL 179 (188)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~ 179 (188)
.+-....++.+..||.....++. .+....|-
T Consensus 498 ~lck~~leek~~ylF~~vA~~~s-q~~q~~l~ 528 (966)
T KOG4286|consen 498 SLCKAHLEDKYRYLFKQVASSTS-QCDQRRLG 528 (966)
T ss_pred HHhcchhHHHHHHHHHHHcCchh-hHHHHHHH
Confidence 66655667778899999855544 34344443
No 259
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=23.97 E-value=35 Score=22.82 Aligned_cols=13 Identities=8% Similarity=0.396 Sum_probs=6.4
Q ss_pred eeHHHHHHHHHHh
Q psy13257 137 ISFANLRSVAVEL 149 (188)
Q Consensus 137 I~~eef~~~l~~~ 149 (188)
||.+|++++...+
T Consensus 10 vTldevr~Av~~f 22 (140)
T PF13075_consen 10 VTLDEVRRAVHQF 22 (140)
T ss_pred ccHHHHHHHHHHH
Confidence 4455555554444
No 260
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=23.77 E-value=2.1e+02 Score=18.49 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=31.8
Q ss_pred CCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHH
Q psy13257 97 SGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEE 176 (188)
Q Consensus 97 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ 176 (188)
...++.+.=+.++..+.... ....+...++.+...+...|+++.-.+++.-... ++.-+..+|.++-=.+-.+
T Consensus 38 qr~l~~e~Ai~~W~llf~~~-~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~~------~~~dls~Yde~~AWP~liD 110 (117)
T PF03556_consen 38 QRSLPLETAIAYWRLLFSGR-FFPLLDSWIEFLEEKYKKAISKDTWNQFLDFFKT------VDEDLSNYDEEGAWPSLID 110 (117)
T ss_dssp -SSEEHHHHHHHHHHHTTTT-SSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHHHH-------HCCHCC--TTSSS-HHHH
T ss_pred cCCCCHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHcCCcCcChhHHHHHHHHHHh------cCccccCCCCCCCCcHHHH
Confidence 34455554444444443222 0112333333333334555777665555442210 0222344554333345666
Q ss_pred HHHHHHH
Q psy13257 177 EFLHIMK 183 (188)
Q Consensus 177 eF~~~l~ 183 (188)
||+.+++
T Consensus 111 eFVe~~r 117 (117)
T PF03556_consen 111 EFVEWLR 117 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 6666553
No 261
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=23.71 E-value=1.8e+02 Score=17.70 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=21.5
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q psy13257 63 SISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKM 113 (188)
Q Consensus 63 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 113 (188)
.++..++..++..+.....+.+--.++..+-.. ...++-.+...++....
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~-~~~~T~~Qv~~il~~f~ 53 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLKVLEAAAKT-NNCFTCAQVKQILSLFS 53 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhc-CCceeHHHHHHHHHHcC
Confidence 344455555554443332333322333322111 11466666666665544
No 262
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=23.68 E-value=1.2e+02 Score=17.13 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=15.0
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHhC
Q psy13257 123 LKAFRLFDEDNTGKISFANLRSVAVELG 150 (188)
Q Consensus 123 ~~~f~~~D~~~~g~I~~eef~~~l~~~~ 150 (188)
..+++.++.+...=++.+|...-.+.+|
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 3445555544444455566666666555
No 263
>KOG1785|consensus
Probab=23.42 E-value=4.1e+02 Score=21.61 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q psy13257 80 PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL 149 (188)
Q Consensus 80 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~ 149 (188)
+++.+....|+.. -.....|.|.+|...+......... -....+=..+|.-.+++|+.-||.-+-+-+
T Consensus 172 iTKadA~~FWr~~-fg~k~ivPW~~F~q~L~~~Hpi~~g-leAmaLktTIDLtcnd~iS~FEFDvFTRLF 239 (563)
T KOG1785|consen 172 ITKADAAEFWRKH-FGKKTIVPWKTFRQALHKVHPISSG-LEAMALKTTIDLTCNDFISNFEFDVFTRLF 239 (563)
T ss_pred eccccHHHHHHHh-cCCcccccHHHHHHHHHhcCCCcch-hHHHHhhceeccccccceeeehhhhHHHhh
Confidence 4455566666554 2345568888888888765422222 233445566899999999999987665544
No 264
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=22.62 E-value=37 Score=20.23 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCCCceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcc
Q psy13257 132 DNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEI 173 (188)
Q Consensus 132 ~~~g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i 173 (188)
+.+|.=+..+|-.+|..+|-.+-+..++-|++.+ ..+.|.+
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSM-tR~tgF~ 76 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSM-TRSTGFM 76 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHh-hcccCce
Confidence 3445555557777777777555566666676665 3334443
No 265
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=22.55 E-value=2e+02 Score=23.52 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=21.7
Q ss_pred CCCCCCCCCHHHH-HHHHHHHHhhcC-CCCCccCH
Q psy13257 34 PSGPKFELTPEQV-ADIQEAFALFDK-EGTGSIST 66 (188)
Q Consensus 34 ~~~~~~~~~~~~~-~~l~~~f~~~d~-~~~g~i~~ 66 (188)
+..+..++|+++. .+-+++|..||. .++|.|..
T Consensus 400 ~~~~~~~mt~eeke~ea~~l~~lf~rl~~~g~i~~ 434 (446)
T PF10165_consen 400 KPNPMPEMTEEEKEREAERLFVLFDRLEKTGVIQV 434 (446)
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHhCCCcCc
Confidence 3455667888887 555666666665 45777765
No 266
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=22.51 E-value=1.5e+02 Score=23.16 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=48.5
Q ss_pred cCCCCCHHHHHHHHHhhCCCC--CCcccHHHHHHHHHHhhcCcchHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhCCCC
Q psy13257 76 LGFEPKKEEIKKMISEISKDN--SGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENI 153 (188)
Q Consensus 76 ~~~~~~~~~~~~l~~~~d~~~--~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~eef~~~l~~~~~~~ 153 (188)
+.+....++.+.++..+..|- .-.+-=++|...+.... ......-+..+-+.+-..=+|++-..|+.+=++.
T Consensus 34 id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~-~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~----- 107 (357)
T PLN02508 34 INKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQ-GPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK----- 107 (357)
T ss_pred CCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCC-HHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc-----
Confidence 355667778888888775443 23344455555444321 1111112222333445566777777777664432
Q ss_pred CHHHHHHHHHhhCCCCC
Q psy13257 154 ADEEIQEMINEADKDGD 170 (188)
Q Consensus 154 ~~~~~~~l~~~~d~~~~ 170 (188)
....+.++|..+..|.-
T Consensus 108 ~nP~lae~F~lMaRDEA 124 (357)
T PLN02508 108 TNPVVAEIFTLMSRDEA 124 (357)
T ss_pred CChHHHHHHHHhCchhH
Confidence 23567888888876653
No 267
>KOG0113|consensus
Probab=22.30 E-value=1.7e+02 Score=22.56 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcC--CCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhcCcchHHHHH
Q psy13257 46 VADIQEAFALFDK--EGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEIL 123 (188)
Q Consensus 46 ~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 123 (188)
+..+...|...+. ..--..+..+-.......+.....+.+..-+...|.+.+-.+.=+-|+.++..-+.....+.+|+
T Consensus 40 vA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLr 119 (335)
T KOG0113|consen 40 VAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPHKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLR 119 (335)
T ss_pred HHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHHHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHH
Confidence 4556666654432 22233344444333333333444455777777788888777666888888876666667788999
Q ss_pred HHHHhhCC
Q psy13257 124 KAFRLFDE 131 (188)
Q Consensus 124 ~~f~~~D~ 131 (188)
..|..|-+
T Consensus 120 reF~~YG~ 127 (335)
T KOG0113|consen 120 REFEKYGP 127 (335)
T ss_pred HHHHhcCc
Confidence 99999854
No 268
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.26 E-value=3e+02 Score=19.71 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=13.5
Q ss_pred HHHhhCCCCCCceeHHHHHHHHH
Q psy13257 125 AFRLFDEDNTGKISFANLRSVAV 147 (188)
Q Consensus 125 ~f~~~D~~~~g~I~~eef~~~l~ 147 (188)
+-..|.+|+.|.|+...+..+.+
T Consensus 124 V~~af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 124 VNRAFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHh
Confidence 44555566666666666555444
No 269
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=22.13 E-value=1.8e+02 Score=20.63 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=21.3
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy13257 57 DKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEI 92 (188)
Q Consensus 57 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 92 (188)
..+.+|.+..+++...+..-+...+.+++..+....
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 346788999998888887766667777887777664
No 270
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=21.60 E-value=2e+02 Score=17.73 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.4
Q ss_pred CCCCcccHHHH
Q psy13257 168 DGDGEINEEEF 178 (188)
Q Consensus 168 ~~~g~i~~~eF 178 (188)
.+.+.|....|
T Consensus 69 ~~~~~Ip~~~~ 79 (90)
T PF02337_consen 69 QGPEKIPIQAF 79 (90)
T ss_dssp CSTTTS-CHHH
T ss_pred hCCCCCChhHH
Confidence 34445544433
No 271
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=21.53 E-value=2.4e+02 Score=19.87 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHH
Q psy13257 58 KEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103 (188)
Q Consensus 58 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 103 (188)
.|.+|.+..+++...+..-+...+.+.+.++... |.+++..++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~---d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES---DDKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc---CCCcceEec
Confidence 3678999999998888765556788888877764 344555554
No 272
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=20.38 E-value=2e+02 Score=16.79 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=21.1
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13257 136 KISFANLRSVAVELGENIADEEIQEMINEAD 166 (188)
Q Consensus 136 ~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d 166 (188)
.-+.+|+...|...|..+|..-+..-++.+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 5588899999999999999877777666653
No 273
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=20.38 E-value=2.1e+02 Score=17.14 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=11.4
Q ss_pred CCCccCHHHHHHHHHHc
Q psy13257 60 GTGSISTKELKIAMRAL 76 (188)
Q Consensus 60 ~~g~i~~~e~~~~l~~~ 76 (188)
.||.++..|...+...+
T Consensus 12 aDG~i~~~E~~~i~~~~ 28 (104)
T cd07177 12 ADGRVDEEEIAAIEALL 28 (104)
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 37888888876655443
No 274
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.31 E-value=1.9e+02 Score=16.66 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=18.6
Q ss_pred CceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q psy13257 135 GKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184 (188)
Q Consensus 135 g~I~~eef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~l~~ 184 (188)
|.|+.+|...+.... -..+....++..+.. .|.=.+..|+..|+.
T Consensus 26 ~vlt~~e~~~i~~~~---~~~~k~~~Lld~l~~--kg~~af~~F~~~L~~ 70 (80)
T cd01671 26 GVLTEEEYEKIRSES---TRQDKARKLLDILPR--KGPKAFQSFLQALQE 70 (80)
T ss_pred CCCCHHHHHHHHcCC---ChHHHHHHHHHHHHh--cChHHHHHHHHHHHh
Confidence 445555444433311 133334444444432 233444555555443
No 275
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.29 E-value=3.5e+02 Score=19.65 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhCCCCCCce-eHHHHHHHHHHh
Q psy13257 119 KEEILKAFRLFDEDNTGKI-SFANLRSVAVEL 149 (188)
Q Consensus 119 ~~~~~~~f~~~D~~~~g~I-~~eef~~~l~~~ 149 (188)
.++++..|+..=.+.+..+ +.+-+..+|..+
T Consensus 83 ~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~F 114 (205)
T PF12238_consen 83 REKMTKYYKKHIYKEDSEVKDYNGLVKFCKDF 114 (205)
T ss_pred HHHHHHHHHHhccCcccccccHHHHHHHHHHH
Confidence 3455555555444444555 555555555543
No 276
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.21 E-value=1.8e+02 Score=17.42 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=9.3
Q ss_pred cccHHHHHHHHHhc
Q psy13257 172 EINEEEFLHIMKKT 185 (188)
Q Consensus 172 ~i~~~eF~~~l~~~ 185 (188)
.-++...+..|++.
T Consensus 57 ~At~~~L~~aLr~~ 70 (80)
T cd08313 57 YATLQHLLSVLRDM 70 (80)
T ss_pred cchHHHHHHHHHHc
Confidence 56777777776654
No 277
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=20.21 E-value=1.5e+02 Score=15.46 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=6.0
Q ss_pred cHHHHHHHHHhcC
Q psy13257 174 NEEEFLHIMKKTS 186 (188)
Q Consensus 174 ~~~eF~~~l~~~~ 186 (188)
+++++...+...|
T Consensus 20 ~W~~~~~~l~~dp 32 (51)
T PF01846_consen 20 SWEEVKPKLSKDP 32 (51)
T ss_dssp SHHHHHHHHTTSC
T ss_pred cHHHHHHHHccCH
Confidence 4444444444433
No 278
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=20.02 E-value=1.4e+02 Score=19.90 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHh
Q psy13257 141 NLRSVAVELGENIADEEIQEMINEADK-DGDGEINEEEFLHIMKK 184 (188)
Q Consensus 141 ef~~~l~~~~~~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~l~~ 184 (188)
=+.+..+..|..+++.+++..+...-. ..+|..+-+.|..+|..
T Consensus 88 ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~ 132 (154)
T PF13624_consen 88 LLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQ 132 (154)
T ss_dssp HHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH-
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 344444556777777777766655210 01355566666666654
No 279
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.00 E-value=1.2e+02 Score=14.28 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy13257 45 QVADIQEAFALFDKEGTGSISTKELKIAM 73 (188)
Q Consensus 45 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l 73 (188)
.+..+..++. .|.||.+||...-
T Consensus 4 ~L~~L~~l~~------~G~IseeEy~~~k 26 (31)
T PF09851_consen 4 RLEKLKELYD------KGEISEEEYEQKK 26 (31)
T ss_pred HHHHHHHHHH------cCCCCHHHHHHHH
Confidence 4455555444 6888888886554
Done!