RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13257
(188 letters)
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 203 bits (519), Expect = 9e-68
Identities = 95/158 (60%), Positives = 129/158 (81%)
Query: 31 MKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMIS 90
M+K + LT +Q +I+EAF LFD +G+G+I KELK+AMR+LGFEPKKEEIK+MI+
Sbjct: 1 MRKRRSERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIA 60
Query: 91 EISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG 150
++ KD SG + +++FL ++T+K+ ++D +EEILKAFRLFD+D TGKIS NL+ VA ELG
Sbjct: 61 DVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG 120
Query: 151 ENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSLY 188
E I DEE+QEMI+EAD++GDGEI+EEEF IMKKT+L+
Sbjct: 121 ETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNLF 158
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 152 bits (386), Expect = 8e-48
Identities = 75/143 (52%), Positives = 104/143 (72%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+LT EQ+A+ +EAF+LFDK+G G+I+TKEL MR+LG P + E++ MI+E+ D +G
Sbjct: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+ + +FL L+ +KM D DS+EEI +AF++FD D G IS A LR V LGE + DEE+
Sbjct: 64 IDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVD 123
Query: 160 EMINEADKDGDGEINEEEFLHIM 182
EMI EAD DGDG+IN EEF+ +M
Sbjct: 124 EMIREADVDGDGQINYEEFVKMM 146
Score = 57.5 bits (139), Expect = 5e-11
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 113 MADKDSKEEILK---AFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169
MAD+ ++E+I + AF LFD+D G I+ L +V LG+N + E+Q+MINE D DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 170 DGEINEEEFLHIMKK 184
+G I+ EFL +M +
Sbjct: 61 NGTIDFPEFLTLMAR 75
Score = 48.6 bits (116), Expect = 1e-07
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
+I+EAF +FD++G G IS EL+ M LG + EE+ +MI E D G + Y++F+
Sbjct: 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144
Query: 108 LVTQK 112
++ K
Sbjct: 145 MMMSK 149
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 137 bits (346), Expect = 1e-41
Identities = 61/145 (42%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+LT EQ+ +++EAF LFD++ G I EL +R+LGF P + EI K+ EI N
Sbjct: 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGN-ET 71
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+ + +FL +++ K+ D +EE+ +AF+LFD+D+ G IS LR V LGE ++DEE++
Sbjct: 72 VDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVE 131
Query: 160 EMINEADKDGDGEINEEEFLHIMKK 184
+++ E D+DGDGEI+ EEF ++K
Sbjct: 132 KLLKEYDEDGDGEIDYEEFKKLIKD 156
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 75.3 bits (186), Expect = 1e-18
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 121 EILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLH 180
E+ +AFRLFD+D G IS L++ LGE +++EEI EMI E DKDGDG+I+ EEFL
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 181 IMK 183
+M
Sbjct: 61 LMA 63
Score = 64.5 bits (158), Expect = 2e-14
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
+++EAF LFDK+G G+IS ELK A+++LG +EEI +MI E+ KD G + +++FL
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 108 LVT 110
L+
Sbjct: 61 LMA 63
Score = 31.7 bits (73), Expect = 0.031
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 157 EIQEMINEADKDGDGEINEEEFLHIMKKTSLY 188
E++E DKDGDG I+ +E +K
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEG 32
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 54.3 bits (131), Expect = 1e-10
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 127 RLFDEDNTGKISFANLRSVAVELGENIADEEIQEMI----NEADKDGDGEINEEEFLHIM 182
+L D+D G I LR + LG + DEE++E+I NE DKDGDG I+ EEFL M
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 46.2 bits (110), Expect = 2e-07
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 54 ALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEI----SKDNSGLLTYKDFLHLV 109
L DK+G G I +EL+ ++ALG + EE++++I KD G +++++FL +
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 39.3 bits (92), Expect = 5e-05
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 94 KDNSGLLTYKDFLHLVTQ---KMADKDSKEEILKAFRLFDEDNTGKISF 139
KD G + ++ L+ K+ D++ +E I F D+D G+ISF
Sbjct: 5 KDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISF 53
Score = 26.2 bits (58), Expect = 2.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 164 EADKDGDGEINEEEFLHIMKK 184
DKDGDG I+ EE ++K
Sbjct: 2 LLDKDGDGYIDVEELRKLLKA 22
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 47.5 bits (114), Expect = 4e-08
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 134 TGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFL 179
G I+ L+ LG ++++EE+ + E D DGDG+I+ EEF
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFC 47
Score = 39.0 bits (92), Expect = 6e-05
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 60 GTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFL 106
G I+ +ELK A+ LG +EE+ + E D G +++++F
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFC 47
Score = 29.0 bits (66), Expect = 0.21
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 97 SGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
GL+T ++ + + S+EE+ FR FD D GKISF
Sbjct: 2 KGLITREELKRALA-LLGISLSEEEVDILFREFDTDGDGKISFE 44
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 43.9 bits (105), Expect = 5e-07
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 157 EIQEMINEADKDGDGEINEEEFLHIMKKT 185
E++E DKDGDG+I+ EEF ++K
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 34.7 bits (81), Expect = 0.001
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRAL 76
+++EAF LFDK+G G I +E K ++AL
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 31.6 bits (73), Expect = 0.017
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 121 EILKAFRLFDEDNTGKISFANLRSVAVEL 149
E+ +AFRLFD+D GKI F + + L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 28.1 bits (64), Expect = 0.26
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 84 EIKKMISEISKDNSGLLTYKDFLHLVT 110
E+K+ KD G + +++F L+
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 42.1 bits (100), Expect = 2e-06
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 157 EIQEMINEADKDGDGEINEEEFLHIMKKT 185
E++E E DKDGDG+I+ EEF ++KK
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRAL 76
+++EAF FDK+G G IS +E K ++ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 30.9 bits (71), Expect = 0.031
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 121 EILKAFRLFDEDNTGKISFANLRSVAVEL 149
E+ +AF+ FD+D GKISF + + +L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 27.8 bits (63), Expect = 0.38
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 84 EIKKMISEISKDNSGLLTYKDFLHLVT 110
E+K+ E KD G +++++F L+
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLK 27
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 38.3 bits (90), Expect = 6e-05
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALG 77
+++EAF LFDK+G G IS +EL+ A+R+LG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 33.7 bits (78), Expect = 0.003
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 121 EILKAFRLFDEDNTGKISFANLRSVAVELG 150
E+ +AF+LFD+D G IS LR LG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 31.4 bits (72), Expect = 0.022
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 157 EIQEMINEADKDGDGEINEEEFLHIMKK 184
E++E DKDGDG I+ EE ++
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRS 28
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 38.3 bits (89), Expect = 0.001
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 130 DEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEE 177
D D G++SF+ + G +A + +E+ AD +GDG + +E
Sbjct: 189 DYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDE 236
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 33.7 bits (78), Expect = 0.005
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
+ FR D D G IS R + G + + ++ + AD D DG++++EEF M
Sbjct: 3 QIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60
Score = 29.1 bits (66), Expect = 0.28
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 49 IQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDF--- 105
+ F D +G G IS E + + G + + ++ D G L ++F
Sbjct: 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLP--RSVLAQIWDLADTDKDGKLDKEEFAIA 58
Query: 106 LHLVTQKMA 114
+HL+ +
Sbjct: 59 MHLIALALN 67
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs that
recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 34.6 bits (80), Expect = 0.005
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 114 ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEI 173
DK E+I FR D++ G ++ A + + ++ G + + ++ N AD D DGE+
Sbjct: 7 EDKAKYEQI---FRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGEL 61
Query: 174 NEEEFLHIMK 183
+++EF M
Sbjct: 62 DKDEFALAMH 71
>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 842
Score = 34.7 bits (80), Expect = 0.023
Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 66 TKELKIAMRALGFEPKKEEIKKMISEISKD------NSGLLTYKDFLHLVTQKMADKDSK 119
++ A ++G E I +++E+ + N ++ ++ LV + + +
Sbjct: 19 EVAIRKAFASVGKPISDEIIYSLVAEVERFIKEKYPNGHNVSVEEIQDLVEKTLMEHGHY 78
Query: 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGE 172
E +K++ L+ T K R ++ + D+ + ++ E KD +
Sbjct: 79 AE-VKSYILYRAQRTEK------RKAREQIIKFFDDDTVLGVLKEIQKDFPSD 124
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 30.3 bits (70), Expect = 0.037
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 158 IQEMINEADKDGDGEINEEEFLHIM 182
++++ + D +GDG+I++EE ++
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
Score = 28.4 bits (65), Expect = 0.19
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 124 KAFRLFDEDNTGKISFANLRSVA 146
FR FD + GKIS L+ +
Sbjct: 3 DLFRQFDTNGDGKISKEELKRLL 25
Score = 26.1 bits (59), Expect = 1.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 49 IQEAFALFDKEGTGSISTKELK 70
+++ F FD G G IS +ELK
Sbjct: 1 LKDLFRQFDTNGDGKISKEELK 22
>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed.
Length = 637
Score = 31.9 bits (73), Expect = 0.18
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 82 KEEIKKMISEISKDNSGLLTYKDFLHLVTQK-----MADKDSKEEILK 124
+EE++K I+E ++N G L + L +V Q+ ++ +EE K
Sbjct: 18 EEELEKKINEKIEENGGFLGEEAALMMVAQELGIDIEYGQEEEEEDFK 65
Score = 27.7 bits (62), Expect = 4.3
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 111 QKMADKDSKEEILKAFRLFDEDNTG---KISFANLRSVAVELGENIADEEIQE 160
QK+ +K S+EE+ K E+N G + + + VA ELG +I + +E
Sbjct: 10 QKILEKISEEELEKKINEKIEENGGFLGEEAALMM--VAQELGIDIEYGQEEE 60
>gnl|CDD|234645 PRK00116, ruvA, Holliday junction DNA helicase RuvA; Reviewed.
Length = 192
Score = 29.7 bits (68), Expect = 0.72
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 59 EGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDN 96
S + +E A+ ALG+ K +E K +++I K+
Sbjct: 142 AAAASSALEEAVSALVALGY--KPKEASKAVAKILKEA 177
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 29.8 bits (67), Expect = 0.95
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 10 SSPTPIFVNNNNSIPNATAAPMKKPSGPKFELTPEQVADIQEAFAL 55
SPT N+ PN T A P+ T + +Q ++L
Sbjct: 457 YSPTKSPPINDTIFPNVTNATAATPTTLFATPTDPRPPGLQALYSL 502
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 27.8 bits (63), Expect = 1.2
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 155 DEEIQEMINEADKDGDGEINEEEFL 179
E + +++ + D + DG+++ +EFL
Sbjct: 50 PEAVDKIMKDLDVNKDGKVDFQEFL 74
>gnl|CDD|240155 cd05029, S-100A6, S-100A6: S-100A6 domain found in proteins similar
to S100A6. S100A6 is a member of the S100 domain family
within EF-hand Ca2+-binding proteins superfamily. Note
that the S-100 hierarchy, to which this S-100A6 group
belongs, contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
exhibit unique patterns of tissue- and cell
type-specific expression and have been implicated in the
Ca2+-dependent regulation of diverse physiological
processes, including cell cycle regulation,
differentiation, growth, and metabolic control . S100A6
is normally expressed in the G1 phase of the cell cycle
in neuronal cells. The function of S100A6 remains
unclear, but evidence suggests that it is involved in
cell cycle regulation and exocytosis. S100A6 may also be
involved in tumorigenesis; the protein is overexpressed
in several tumors. Ca2+ binding to S100A6 leads to a
conformational change in the protein, which exposes a
hydrophobic surface for interaction with target
proteins. Several such proteins have been identified:
glyceraldehyde-3-phosphate dehydrogenase , annexins 2,
6 and 11 and Calcyclin-Binding Protein (CacyBP).
Length = 88
Score = 27.5 bits (61), Expect = 1.6
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 149 LGENIADEEIQEMINEADKDGDGEINEEEFL 179
+G + D EI +++ + D++ D E+N +E++
Sbjct: 44 IGSKLQDAEIAKLMEDLDRNKDQEVNFQEYV 74
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific
protein-protein interactions which play a role in many
critical cell processes, such as osteoclastogenesis,
angiogenesis, early cardiovascular development, and cell
polarity. A canonical PB1-PB1 interaction, which
involves heterodimerization of two PB1 domain, is
required for the formation of macromolecular signaling
complexes ensuring specificity and fidelity during
cellular signaling. The interaction between two PB1
domain depends on the type of PB1. There are three types
of PB1 domains: type I which contains an OPCA motif,
acidic aminoacid cluster, type II which contains a basic
cluster, and type I/II which contains both an OPCA motif
and a basic cluster. Interactions of PB1 domains with
other protein domains have been described as a
noncanonical PB1-interactions. The PB1 domain module is
conserved in amoebas, fungi, animals, and plants.
Length = 81
Score = 26.9 bits (60), Expect = 2.2
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 22/77 (28%)
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLF--DEDNTGKISFANLRSVAVELGENIADEE 157
++++D + +K F+L DED ++ ++ DE+
Sbjct: 21 ISFEDLRSKIAEKFGLDAVS------FKLKYPDEDGD-LVTISS-------------DED 60
Query: 158 IQEMINEADKDGDGEIN 174
++E I EA + G ++
Sbjct: 61 LEEAIEEARRSGSKKLR 77
>gnl|CDD|215669 pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not
include all Prosite members. The cytochrome 556 and
cytochrome c' families are not included. All these are
now in a new clan together. The C-terminus of DUF989,
pfam06181, has now been merged into this family.
Length = 81
Score = 26.8 bits (59), Expect = 2.4
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 2 GAHFRKSNSSPTPIFVNNNNSIPNATAAPMKKPSGPKFELTPEQVADI 49
GA + I A M K G +LT E+ A +
Sbjct: 29 GAPAGYLLDALAAIKSGARGIGAQA---VMSKAPGNATQLTDEERAAL 73
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 28.1 bits (62), Expect = 2.5
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKD 168
+A R + + + A ++SV +EL EN+ +E++ ++ E ++D
Sbjct: 43 QASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNED 87
>gnl|CDD|214820 smart00796, AHS1, Allophanate hydrolase subunit 1. This domain
represents subunit 1 of allophanate hydrolase (AHS1).
Length = 201
Score = 27.9 bits (63), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 136 KISFANLRSVAVELGENIADEEIQEMI 162
+I A R++ VE G+ I D + +
Sbjct: 2 RIRPAGDRALLVEFGDEI-DLALNRRV 27
>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function
unknown].
Length = 538
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEE-----IQEMINEADKDG 169
K+ LF I + + LG+ + DEE I + AD+ G
Sbjct: 237 KSL-LFSASGRAFIMYRVKGGSLIALGDPVGDEEAWPELIWAFLELADRHG 286
>gnl|CDD|224921 COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy
production and conversion].
Length = 150
Score = 27.7 bits (61), Expect = 2.8
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 3 AHFRKSNSSPTPIFVNNNNS--IPNATAAPMKKPSGPKFELTPEQVADIQEAFA 54
H + P F + + I A M G + +L+ E VA I
Sbjct: 95 LHGTRGGWGEMPAFADTLSDEQIAAVAAYVMPDLPGMQAQLSDEDVAAIAAYLK 148
>gnl|CDD|149945 pfam09068, efhand_1, EF hand. Members of this family adopt a
helix-loop-helix motif, as per other EF hand domains.
However, since they do not contain the canonical pattern
of calcium binding residues found in many EF hand
domains, they do not bind calcium ions. The main
function of this domain is the provision of specificity
in beta-dystroglycan recognition, though in dystrophin
it serves an additional role: stabilisation of the WW
domain (pfam00397), enhancing dystroglycan binding.
Length = 125
Score = 27.2 bits (61), Expect = 3.1
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 53 FALFDKEGTGSISTKELKIAMRAL 76
++D TG I KI + L
Sbjct: 101 LNVYDPGRTGKIRVLSFKIGLILL 124
>gnl|CDD|204144 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal.
Members of this family adopt a structure consisting of
two layers of parallel alpha-helices, five in the inner
layer and four in the outer, arranged in an antiparallel
manner, with perpendicular loops containing short
helical segments on top. They are required for the
formation of a deep cleft harbouring the catalytic Zn2+
site in Leukotriene A4 hydrolase.
Length = 143
Score = 27.2 bits (61), Expect = 3.2
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 25/98 (25%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEI-------- 92
L EQV + E + L + + I + L++A+RA G+EP E+ K + +
Sbjct: 49 LPLEQVKALDEVYKLSNSK-NAEIRFRWLRLAIRA-GYEPVYPEVAKFLGSVGRMKFVRP 106
Query: 93 -------------SKDNSGLLTYKDFLHLVTQKMADKD 117
+ + +DF H + + +KD
Sbjct: 107 LYRALAKGVDKELAIET--FKKARDFYHPICRATVEKD 142
>gnl|CDD|187827 cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3;
Distinct Cas3 family with HD domain fused to C-termus of
Helicase domain. CRISPR (Clustered Regularly
Interspaced Short Palindromic Repeats) and associated
Cas proteins comprise a system for heritable host
defense by prokaryotic cells against phage and other
foreign DNA; DNA helicase Cas3; This protein includes
both DEAH and HD motifs; signature gene for Type I.
Length = 843
Score = 28.1 bits (62), Expect = 3.4
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
ELT D + L E K+ A + + P +E K + + + + N
Sbjct: 209 ELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDE-KFLSTMVKELN--- 264
Query: 100 LTYKD 104
L KD
Sbjct: 265 LLMKD 269
>gnl|CDD|131798 TIGR02751, PEPCase_arch, phosphoenolpyruvate carboxylase, archaeal
type. This family is the archaeal-type
phosphoenolpyruvate carboxylase, although not every host
species is archaeal. These sequences bear little
resemblance to the bacterial/eukaryotic type. The
members from Sulfolobus solfataricus and
Methanothermobacter thermautotrophicus were verified
experimentally, while the activity is known to be
present in a number of other archaea [Energy metabolism,
Other].
Length = 506
Score = 27.8 bits (62), Expect = 4.1
Identities = 14/78 (17%), Positives = 26/78 (33%)
Query: 105 FLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINE 164
+ + + D+D E I + + D + + N S EE ++MI
Sbjct: 391 LIGIGSLSELDEDDLEVIKELYPNLRSDLSFAARYLNPESADSLKDIVKLSEETEDMIVI 450
Query: 165 ADKDGDGEINEEEFLHIM 182
K + E + L
Sbjct: 451 DVKYDEDEPGIKYNLVYT 468
>gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.
Length = 1112
Score = 27.8 bits (63), Expect = 4.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEE 177
S EEIL F +E +I + L E+I DEE E++ EA+ + E++
Sbjct: 209 SDEEILDLFYEKEEFGK-EIEVPVEYLLGKVLAEDIVDEETGEVLAEANDEITEELDGPY 267
Query: 178 FLHIMKK 184
+ ++K
Sbjct: 268 IRNTLEK 274
>gnl|CDD|237371 PRK13381, PRK13381, peptidase T; Provisional.
Length = 404
Score = 27.2 bits (61), Expect = 6.3
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 42 TPEQVADIQEAFALFDKEGTGSISTKELKIAMR---ALGFEPKKEEIKKMISEISK 94
TPE +E + + G+++ +LK+ +R GFE +K+ I++++++I+
Sbjct: 249 TPEHTEG-REGYIWV-NDLQGNVNKAKLKLIIRDFDLDGFEARKQFIEEVVAKINA 302
>gnl|CDD|132709 TIGR03670, rpoB_arch, DNA-directed RNA polymerase subunit B. This
model represents the archaeal version of DNA-directed
RNA polymerase subunit B (rpoB) and is observed in all
archaeal genomes.
Length = 599
Score = 27.3 bits (61), Expect = 6.4
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 67 KELKIAMRALGFEPKKEEI-------KKMISEISKDNSGLLTYKDFLHLVTQKM 113
+EL+ + LGF+P +E+ +K+ +EI G++ Y+ H+V K+
Sbjct: 431 EELRKELLKLGFKPDGKEVMYDGITGEKLEAEIF---IGVIYYQKLHHMVADKI 481
>gnl|CDD|129193 TIGR00084, ruvA, Holliday junction DNA helicase, RuvA subunit.
RuvA specifically binds Holliday junctions as a sandwich
of two tetramers and maintains the configuration of the
junction. It forms a complex with two hexameric rings of
RuvB, the subunit that contains helicase activity. The
complex drives ATP-dependent branch migration of the
Holliday junction recombination intermediate. The
endonuclease RuvC resolves junctions [DNA metabolism,
DNA replication, recombination, and repair].
Length = 191
Score = 26.6 bits (59), Expect = 7.4
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 67 KELKIAMRALGFEPKKEEIKKMISEISKDN 96
EL A+ +LG++P+ EI++ + +I
Sbjct: 148 DELFEALVSLGYKPQ--EIQQALKKIKNKP 175
>gnl|CDD|131404 TIGR02351, thiH, thiazole biosynthesis protein ThiH. Members this
protein family are the ThiH protein of thiamine
biosynthesis, a homolog of the BioB protein of biotin
biosynthesis. Genes for the this protein generally are
found in operons with other thiamin biosynthesis genes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 366
Score = 26.9 bits (60), Expect = 7.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 37 PKFELTPEQVADIQEAFALFDKEGTGSISTKELKI 71
PK +T ++ I A+ LFD S+ST+E K
Sbjct: 268 PKVIVTDRELVQIICAYRLFDPFVEISLSTRESKK 302
>gnl|CDD|225309 COG2511, GatE, Archaeal Glu-tRNAGln amidotransferase subunit E
(contains GAD domain) [Translation, ribosomal structure
and biogenesis].
Length = 631
Score = 26.9 bits (60), Expect = 7.8
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 102 YKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKI-SFANLRSVAVELGENIADEEIQE 160
++ L LV++ K++ EEILKA + +I L+ ++ E E I DE I+
Sbjct: 525 IEELLRLVSEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEIIES 584
Query: 161 MINEADKDGDGEINE 175
++ + G G +
Sbjct: 585 NLDVIKERGMGAMGL 599
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 26.9 bits (60), Expect = 8.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 144 SVAVELGENIADEEIQEMINEADKDGDGE 172
SV ++ ++++E+ MI EA+ D +
Sbjct: 493 SVTIQGASTLSEQEVNRMIQEAEAKADED 521
>gnl|CDD|112955 pfam04165, DUF401, Protein of unknown function (DUF401). Members
if this family are predicted to have 10 transmembrane
regions.
Length = 386
Score = 26.7 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 28 AAPMKKPSGPKFELTPEQVADIQEAF 53
+APM +P KF L PE+ I F
Sbjct: 113 SAPMIEPVAKKFRLNPEKKTLINYWF 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.130 0.349
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,600,189
Number of extensions: 912548
Number of successful extensions: 1473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1443
Number of HSP's successfully gapped: 147
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.2 bits)