RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13257
(188 letters)
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 234 bits (600), Expect = 4e-80
Identities = 96/168 (57%), Positives = 128/168 (76%)
Query: 21 NSIPNATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEP 80
+ + + + LT EQ +I+EAF LFD +G+G+I KELK+AMRALGFEP
Sbjct: 2 SYKAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEP 61
Query: 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
KKEEIKKMISEI KD SG + +++FL ++T KM ++DS+EEILKAFRLFD+DN+G I+
Sbjct: 62 KKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIK 121
Query: 141 NLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSLY 188
+LR VA ELGEN+ +EE+QEMI EAD++ D EI+E+EF+ IMKKTSL+
Sbjct: 122 DLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 169
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 221 bits (565), Expect = 7e-75
Identities = 73/156 (46%), Positives = 97/156 (62%)
Query: 30 PMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMI 89
+ EL EQ +I EAF+LFD G + ELK+AM+ALGFE K EI +I
Sbjct: 6 SSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65
Query: 90 SEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL 149
E + L+ Y DF ++ +K+ +D +EI +AF+LFD+D+TGKIS NLR VA EL
Sbjct: 66 DEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKEL 125
Query: 150 GENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185
GE + DEE++ MI E D DGDGEINE EF+ I +
Sbjct: 126 GETLTDEELRAMIEEFDLDGDGEINENEFIAICTDS 161
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 217 bits (556), Expect = 1e-73
Identities = 100/143 (69%), Positives = 124/143 (86%)
Query: 42 TPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLT 101
T EQ +I+EAF LFD +GTG+I KELK+AMRALGFEPKKEEIKKMISEI K+ +G +
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMN 60
Query: 102 YKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEM 161
+ DFL ++TQKM++KD+KEEILKAF+LFD+D TGKISF NL+ VA ELGEN+ DEE+QEM
Sbjct: 61 FGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEM 120
Query: 162 INEADKDGDGEINEEEFLHIMKK 184
I+EAD+DGDGE++E+EFL IMKK
Sbjct: 121 IDEADRDGDGEVSEQEFLRIMKK 143
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 215 bits (551), Expect = 5e-73
Identities = 73/145 (50%), Positives = 105/145 (72%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+LT EQ+A+ +EAFALFDK+G G+I+TKEL MR+LG P + E++ MI+E+ D +G
Sbjct: 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 62
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+ + +FL L+ +KM ++DS+EE+++AF++FD D G IS A LR V LGE + D+E+
Sbjct: 63 IDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVD 122
Query: 160 EMINEADKDGDGEINEEEFLHIMKK 184
EMI EAD DGDG IN EEF+ +M
Sbjct: 123 EMIREADIDGDGHINYEEFVRMMVS 147
Score = 69.8 bits (172), Expect = 7e-16
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
++ EAF +FD++G G IS EL+ M LG + +E+ +MI E D G + Y++F+
Sbjct: 84 ELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVR 143
Query: 108 LVTQK 112
++ K
Sbjct: 144 MMVSK 148
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 215 bits (551), Expect = 2e-72
Identities = 74/145 (51%), Positives = 105/145 (72%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+LT EQ+A+ +EAF+LFDK+G G+I+TKEL MR+LG P + E++ MI+E+ D +G
Sbjct: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+ + +FL ++ +KM D DS+EEI +AFR+FD+D G IS A LR V LGE + DEE+
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 123
Query: 160 EMINEADKDGDGEINEEEFLHIMKK 184
EMI EAD DGDG++N EEF+ +M
Sbjct: 124 EMIREADIDGDGQVNYEEFVQMMTA 148
Score = 103 bits (259), Expect = 2e-28
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
+I+EAF +FDK+G G IS EL+ M LG + EE+ +MI E D G + Y++F+
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 144
Query: 108 LVTQKMADKDS---KEEILKAFRLFDEDNTGKISF 139
++T K + KE I R +
Sbjct: 145 MMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSVL 179
Score = 79.1 bits (196), Expect = 4e-19
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 113 MADKDSKEEIL---KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169
MAD+ ++E+I +AF LFD+D G I+ L +V LG+N + E+Q+MINE D DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 170 DGEINEEEFLHIMKK 184
+G I+ EFL +M +
Sbjct: 61 NGTIDFPEFLTMMAR 75
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 214 bits (548), Expect = 2e-72
Identities = 60/145 (41%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
LT EQ+A+ +EAFALFDK+ +GSIS EL MR+LG P + E+ +++EI D +
Sbjct: 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHA 63
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+ + +FL L+++++ DS++E+L+AF++FD++ G IS A L+ V +GE + D E+
Sbjct: 64 IEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVD 123
Query: 160 EMINEADKDGDGEINEEEFLHIMKK 184
EM+ E DG GEIN ++F ++ K
Sbjct: 124 EMLREVS-DGSGEINIKQFAALLSK 147
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 211 bits (540), Expect = 5e-71
Identities = 55/161 (34%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 28 AAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKK 87
A+ + + + L+ E +A+ + AF +FD +G G ISTKEL MR LG P KEE+
Sbjct: 1 ASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDA 60
Query: 88 MISEISKDNSGLLTYKDFLHLVTQKMADK---DSKEEILKAFRLFDEDNTGKISFANLRS 144
+I E+ +D SG + +++FL ++ ++M + S+EE+ FR+FD++ G I L
Sbjct: 61 IIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGE 120
Query: 145 VAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185
+ GE++ +E+I++++ ++DK+ DG I+ +EFL +M+
Sbjct: 121 ILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV 161
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 218 bits (556), Expect = 6e-70
Identities = 75/153 (49%), Positives = 107/153 (69%)
Query: 32 KKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISE 91
K + +LT EQ+A+ +EAF+LFDK+G G+I+TKEL MR+LG P + E++ MI+E
Sbjct: 297 KLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 356
Query: 92 ISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE 151
+ D +G + + +FL ++ +KM D DS+EEI +AFR+FD+D G IS A LR V LGE
Sbjct: 357 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 416
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ DEE+ EMI EAD DGDG++N EEF+ +M
Sbjct: 417 KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 449
Score = 110 bits (276), Expect = 6e-29
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 24/165 (14%)
Query: 29 APMKKPSGPKFE--LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIK 86
+ P K + +F K+ + E+K L + + I
Sbjct: 227 CFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGI- 285
Query: 87 KMISEISKDNSGLLTYKDFLHLVTQKMA-------DKDSKEEILKAFRLFDEDNTGKISF 139
+K+ +++ K+ ++ E +AF LFD+D G I+
Sbjct: 286 --------------DFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITT 331
Query: 140 ANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
L +V LG+N + E+Q+MINE D DG+G I+ EFL +M +
Sbjct: 332 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 376
Score = 72.2 bits (177), Expect = 2e-15
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
+I+EAF +FDK+G G IS EL+ M LG + EE+ +MI E D G + Y++F+
Sbjct: 386 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 445
Query: 108 LVTQK 112
++T K
Sbjct: 446 MMTAK 450
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 205 bits (523), Expect = 1e-68
Identities = 46/155 (29%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 36 GPKFELTPEQVADIQEAFALFDK-EGTGSISTKELKIAMRALGFEPKKEEIKKMISEISK 94
G +L+ QV ++ AF F+ EG+G +ST ++ I + LG + K I+++I E
Sbjct: 2 GDVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDP 61
Query: 95 DNSGLLTYKDFLHLVTQKMADK----DSKEEILKAFRLFDEDNTGKISFANLRSVAVELG 150
+G + + F + + + ++ ++E+ +AFRL+D++ G IS +R + EL
Sbjct: 62 FGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELD 121
Query: 151 ENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185
E ++ E++ MI+E D DG G ++ EEF+ +M
Sbjct: 122 ETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTGG 156
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 203 bits (520), Expect = 3e-68
Identities = 49/150 (32%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
L PE++ +++EAF FDK+ G I+ ++L MR +G+ P + E+ ++ +I+ + G
Sbjct: 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH 63
Query: 100 LTYKDFLHLVTQKM----ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE-LGENIA 154
+ + DF+ L+ K+ AD +E+ AFR FD + G+IS + LR LG +
Sbjct: 64 VDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVG 123
Query: 155 DEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+I+E+I + D +GDG ++ EEF+ +M +
Sbjct: 124 HRDIEEIIRDVDLNGDGRVDFEEFVRMMSR 153
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 202 bits (516), Expect = 1e-67
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+QV++ +EAF LFD E TG I+ + L+ ++ G + +M +E +G + +
Sbjct: 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFP 62
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMIN 163
+FL ++ ++M S++ + +AFR FD + TG I A L+ + LG+ + E E +
Sbjct: 63 EFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLG 122
Query: 164 EADKDGDGEINEEEFLHIMK 183
+ + G+I + F++ M
Sbjct: 123 ITETE-KGQIRYDNFINTMF 141
Score = 74.8 bits (185), Expect = 7e-18
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEE 176
D E +AF LFD + TG I+ L++V + G + EM NEAD G+G+I
Sbjct: 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFP 62
Query: 177 EFLHIMKK 184
EFL +M +
Sbjct: 63 EFLSMMGR 70
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 201 bits (513), Expect = 5e-67
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 40 ELTPEQVADIQEAFALFDKEGT-GSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSG 98
+LT EQ + + AF +F GSISTKEL MR LG P EE+++MI E+ +D SG
Sbjct: 11 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSG 70
Query: 99 LLTYKDFLHLVTQKMADKD---SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD 155
+ + +FL ++ + M D S+EE+ FR+FD++ G I L+ + GE I +
Sbjct: 71 TVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITE 130
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIMK 183
++I+E++ + DK+ DG I+ +EFL MK
Sbjct: 131 DDIEELMKDGDKNNDGRIDYDEFLEFMK 158
Score = 72.2 bits (178), Expect = 1e-16
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 111 QKMADKDSKEEIL---KAFRLFDED-NTGKISFANLRSVAVELGENIADEEIQEMINEAD 166
+ ++ ++E+ AF +F G IS L V LG+N EE+QEMI+E D
Sbjct: 6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVD 65
Query: 167 KDGDGEINEEEFLHIMKK 184
+DG G ++ +EFL +M +
Sbjct: 66 EDGSGTVDFDEFLVMMVR 83
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 200 bits (510), Expect = 1e-66
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
Q+ + +EAF + D+ G I ++L + ++G P E ++ M+SE G +
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP----GPI 56
Query: 101 TYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQE 160
+ FL + +K+ D ++ I AF FDE+ +G I +LR + +G+ DEE+ E
Sbjct: 57 NFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDE 116
Query: 161 MINEADKDGDGEINEEEFLHIMKK 184
M EA D G N EF I+K
Sbjct: 117 MYREAPIDKKGNFNYVEFTRILKH 140
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 199 bits (508), Expect = 2e-66
Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 33 KPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEI 92
+ + + +L+ Q+ +++EAF + D++ G I ++LK +LG P +E+ M+ E
Sbjct: 2 EEAPRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC 61
Query: 93 SKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN 152
G L + FL L +K++ D ++ + AF +FDED G I L+ + +G+N
Sbjct: 62 P----GQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDN 117
Query: 153 IADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ EEI+ + +A + + N + + I K
Sbjct: 118 FSKEEIKNVWKDAPLK-NKQFNYNKMVDIKGK 148
Score = 64.5 bits (158), Expect = 9e-14
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
++ AF++FD++G G I LK + +G KEEIK + + N Y +
Sbjct: 86 ALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKN-KQFNYNKMVD 144
Query: 108 LVTQKMAD 115
+ + +
Sbjct: 145 IKGKAEDE 152
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 200 bits (510), Expect = 4e-66
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 24 PNATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKE 83
P+ + S T QV + +EAF L D++ G IS +++ +LG ++
Sbjct: 34 PSQKRRAQRSGSNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQ 93
Query: 84 EIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLR 143
E+ M++E G + + FL + ++A D ++ I+ AF LFDE + GK L+
Sbjct: 94 ELDSMVAEA----PGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGD-GKCKEETLK 148
Query: 144 SVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
GE + +E+ + ++EA DG+G I+ ++F I+ K
Sbjct: 149 RSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTK 189
Score = 70.4 bits (173), Expect = 1e-15
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
I AF LFD EG G + LK ++ G + ++E+ + +SE D +GL+ K F
Sbjct: 127 VIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185
Query: 108 LVTQKMADKDS 118
++T+ ++ +
Sbjct: 186 ILTKGAKEEGA 196
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 198 bits (506), Expect = 5e-66
Identities = 43/155 (27%), Positives = 84/155 (54%), Gaps = 5/155 (3%)
Query: 32 KKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISE 91
K SG +L +Q+ +++EAF++ D + G +S +++K LG P +E+ M+
Sbjct: 3 KAASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAML-- 60
Query: 92 ISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE 151
K+ G L + FL + + K++ DS+E I AF +FDE T K++ ++ + +G+
Sbjct: 61 --KEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGD 118
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186
N +E++ EA +G G+ + +F ++K +
Sbjct: 119 NFNKDEMRMTFKEAPVEG-GKFDYVKFTAMIKGSG 152
Score = 66.4 bits (163), Expect = 2e-14
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
I+ AFA+FD++ T ++ + +K + +G K+E++ E + G Y F
Sbjct: 88 TIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYVKFTA 146
Query: 108 LVTQKMADK 116
++ ++
Sbjct: 147 MIKGSGEEE 155
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 198 bits (506), Expect = 6e-66
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Query: 30 PMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALG-FEPKKEEIKKM 88
+ S ++ D +EAF + D+ G I +L+ A+G K EE+ M
Sbjct: 8 AAEGSSNVFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAM 67
Query: 89 ISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE 148
I K+ SG + + FL + +K+ D ++ I+ AF++ D D G I + L +
Sbjct: 68 I----KEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTT 123
Query: 149 LGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
G EEI+ M D G ++ + +++
Sbjct: 124 GGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITH 159
Score = 72.6 bits (179), Expect = 1e-16
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
I AF + D +G GSI L+ + G EEIK M + D +G + YK+ +
Sbjct: 96 VIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICY 155
Query: 108 LVTQKMADKD 117
++T +
Sbjct: 156 VITHGEDAEG 165
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 195 bits (498), Expect = 7e-65
Identities = 47/147 (31%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKD--NS 97
E + D +EAF LFD+ G I+ ++ RALG P EI K++ SK+ N+
Sbjct: 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA 60
Query: 98 GLLTYKDFLHLVTQKMADKD--SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD 155
+T+++FL ++ +KD + E+ ++ R+FD++ G + A LR V LGE + +
Sbjct: 61 AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTE 120
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIM 182
EE++E++ + D +G IN E F+ +
Sbjct: 121 EEVEELMKGQE-DSNGCINYEAFVKHI 146
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 195 bits (497), Expect = 2e-64
Identities = 46/148 (31%), Positives = 85/148 (57%), Gaps = 3/148 (2%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
L+ E++A ++E F + D + +G I+ +ELK ++ +G K+ EI ++ DNSG
Sbjct: 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGT 79
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+ YK+F+ T + + ++ + AF FD+D +G I+ L+ E G + D I+
Sbjct: 80 IDYKEFI-AATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIE 136
Query: 160 EMINEADKDGDGEINEEEFLHIMKKTSL 187
E++ + D+D DG I+ EF+ +M+K S+
Sbjct: 137 ELMRDVDQDNDGRIDYNEFVAMMQKGSI 164
Score = 80.3 bits (199), Expect = 1e-19
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 102 YKDFLHLVTQKMADKDSKEEI---LKAFRLFDEDNTGKISFANLRSVAVELGENIADEEI 158
F + + +A+ S+EEI + F + D D +G+I+F L++ +G N+ + EI
Sbjct: 6 MNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEI 65
Query: 159 QEMINEADKDGDGEINEEEFLHIMKK 184
+++ AD D G I+ +EF+
Sbjct: 66 LDLMQAADVDNSGTIDYKEFIAATLH 91
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 193 bits (493), Expect = 1e-63
Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
L+ E++ ++E F + D + +G+I+ ELK ++ +G E + EIK ++ D SG
Sbjct: 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 62
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+ Y +F+ T + + +E ++ AF FD+D +G I+ ++ + G + D I
Sbjct: 63 IDYGEFIAA-TVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHID 119
Query: 160 EMINEADKDGDGEINEEEFLHIMKK 184
+MI E D+D DG+I+ EF +M+K
Sbjct: 120 DMIKEIDQDNDGQIDYGEFAAMMRK 144
Score = 90.7 bits (226), Expect = 2e-23
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
++ AF+ FDK+G+G I+ E++ A + G + I MI EI +DN G + Y +F
Sbjct: 83 NLVSAFSYFDKDGSGYITLDEIQQACKDFGLDD--IHIDDMIKEIDQDNDGQIDYGEFAA 140
Query: 108 LVTQKMADKDSKEEILK-------AFRLFDEDNTGKIS 138
++ ++ + ++ A L D + I
Sbjct: 141 MMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIE 178
Score = 28.7 bits (65), Expect = 0.81
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 32 KKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAM 73
+K +G T + ++++A L D I
Sbjct: 145 RKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKHHHH 186
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 192 bits (490), Expect = 1e-63
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 40 ELTPEQVADIQEAFALFD--KEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNS 97
+L+ +++ D+++ F LFD G++ +L R LG P+ E++ + K
Sbjct: 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKMGE 60
Query: 98 GLLTYKDFLHLVTQKM-ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADE 156
L +++FL M ++ + + ++AF+ FD + G IS A LR V LGE ++DE
Sbjct: 61 KSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 120
Query: 157 EIQEMINEAD--KDGDGEINEEEFLHIMK 183
++ E+I D +D +G + E+F+ +
Sbjct: 121 DVDEIIKLTDLQEDLEGNVKYEDFVKKVM 149
Score = 65.6 bits (161), Expect = 3e-14
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISE--ISKDNSGLLTYKDF 105
D EAF FD+EG G IS EL+ + ALG E++ ++I + +D G + Y+DF
Sbjct: 85 DYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDF 144
Query: 106 LHLVTQKM 113
+ V
Sbjct: 145 VKKVMAGP 152
Score = 64.1 bits (157), Expect = 1e-13
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 115 DKDSKEEILKAFRLFDE--DNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGE 172
+D +++ F LFD G + L V LG N +E++ + K G+
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKMGEKS 62
Query: 173 INEEEFLHIMKK 184
+ EEFL +
Sbjct: 63 LPFEEFLPAYEG 74
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 191 bits (488), Expect = 2e-63
Identities = 42/146 (28%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMI-SEISKDNSGLLTYK 103
++ F LFDK+G G+I+ L +RA+G+ P + ++ +I ++ S ++ LT
Sbjct: 2 ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Query: 104 DFLHLVTQKMADKDSK-----EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEI 158
L+ + D+ E+ +KAF++FD+++TGK+S +LR + LGE + D E+
Sbjct: 62 QITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEV 121
Query: 159 QEMINEADKDGDGEINEEEFLHIMKK 184
E++ + D +GEI+ ++F+ + +
Sbjct: 122 DELLKGVEVDSNGEIDYKKFIEDVLR 147
Score = 70.7 bits (174), Expect = 3e-16
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 31 MKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMIS 90
++ T + D +AF +FDKE TG +S +L+ + LG + E+ +++
Sbjct: 67 IEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLK 126
Query: 91 EISKDNSGLLTYKDFLHLVTQK 112
+ D++G + YK F+ V ++
Sbjct: 127 GVEVDSNGEIDYKKFIEDVLRQ 148
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 190 bits (486), Expect = 5e-63
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKD--NS 97
E +Q+ + +EAF LFD+ G G I + MRALG P E+ K++ D S
Sbjct: 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKS 62
Query: 98 GLLTYKDFLHLVTQ--KMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD 155
+ ++ FL ++ K + + E+ L+ FR+FD++ GK+ A LR V LGE + +
Sbjct: 63 RRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTE 122
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIM 182
EE++ ++ +D +G IN E FL +
Sbjct: 123 EEVETVL-AGHEDSNGCINYEAFLKHI 148
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 188 bits (479), Expect = 4e-62
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
IQE F +FDK+ G +S +EL A+R+LG P E+ + +++
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFD---LA 58
Query: 104 DFLHLVTQKMADK-DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMI 162
F + + + + +E+L AFR D++ G I A LR + + LG+ + E++E++
Sbjct: 59 TFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELM 118
Query: 163 NEADKDGDGEINEEEFLHIMK 183
E GDG IN E F+ ++
Sbjct: 119 KEVSVSGDGAINYESFVDMLV 139
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 189 bits (483), Expect = 5e-62
Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
L ++ +++ F D + +G++S++E+ ++ +G++ +I +++ +I + SG
Sbjct: 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQ 109
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSV--AVELGENIADEE 157
+ Y DFL K KE L F+ FD D GKIS L+ + ++ + D+
Sbjct: 110 IHYTDFLAATIDKQTY-LKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKA 168
Query: 158 IQEMINEADKDGDGEINEEEFLHIMKK 184
I ++ E D +GDGEI+ EF+ +M K
Sbjct: 169 IDSLLQEVDLNGDGEIDFHEFMLMMSK 195
Score = 57.6 bits (140), Expect = 6e-11
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 49 IQEAFALFDKEGTGSISTKELKIAMRA--LGFEPKKEEIKKMISEISKDNSGLLTYKDFL 106
F FD +G G IS +ELK + + I ++ E+ + G + + +F+
Sbjct: 131 CLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFM 190
Query: 107 HLVTQK 112
++++K
Sbjct: 191 LMMSKK 196
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 185 bits (473), Expect = 4e-61
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 35 SGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISK 94
S + E+V + +K G IS R LG P + KK+ +
Sbjct: 3 SVADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIK----E 58
Query: 95 DNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIA 154
LTY+ +L ++ + DKD+ EE++K F FD + TG ++ + ++++ G+ +
Sbjct: 59 LYGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALT 118
Query: 155 DEEIQEMINEADKDGDGEINEEEFLHIMKK 184
D+E + +N + I+ + F + +
Sbjct: 119 DQEAIDALNAF--SSEDNIDYKLFCEDILQ 146
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 185 bits (472), Expect = 7e-61
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 40 ELTPEQVADIQEAFALFD--KEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNS 97
+LT +++ +++E F LFD G + ++ +R LG P + ++ + K
Sbjct: 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGE 60
Query: 98 GLLTYKDFLHLVTQ--KMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD 155
++ L + + + +E ++AF+ FD + G IS A +R+V LGE I +
Sbjct: 61 KAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITE 120
Query: 156 EEIQEMINEAD--KDGDGEINEEEFLHIM 182
++ ++ D +D DG I E+ + +
Sbjct: 121 DQCNDIFTFCDIREDIDGNIKYEDLMKKV 149
Score = 61.8 bits (151), Expect = 1e-12
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 115 DKDSKEEILKAFRLFDE--DNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGE 172
KD EE+ + F LFD G + A + + LG N + ++ + K G+
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKA 62
Query: 173 INEEEFLHIMKK 184
EE L I ++
Sbjct: 63 YKLEEILPIYEE 74
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 178 bits (455), Expect = 2e-58
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+ ++AF+LFD+ GTG I + +RA G P EI ++ + +
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIE----STLPAEVDME 57
Query: 104 DFLHLVTQKMADKD--SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEM 161
FL ++ + EE +K F++FD+D TG I LR V LGE +++EE+ E+
Sbjct: 58 QFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDEL 117
Query: 162 INEADKDGDGEINEEEFLHIM 182
+ DG +N +F+ ++
Sbjct: 118 LKGVPVK-DGMVNYHDFVQMI 137
Score = 64.8 bits (159), Expect = 6e-14
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEF 178
+AF LFD TG+I ++ + G+N EI E+ + E++ E+F
Sbjct: 4 DSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEI----ESTLPAEVDMEQF 59
Query: 179 LHIMKK 184
L ++ +
Sbjct: 60 LQVLNR 65
Score = 62.5 bits (153), Expect = 4e-13
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 43 PEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTY 102
P + + F +FDK+ TG I EL+ + +LG + EE+ +++ + + G++ Y
Sbjct: 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKD-GMVNY 130
Query: 103 KDFLHLVT 110
DF+ ++
Sbjct: 131 HDFVQMIL 138
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 173 bits (441), Expect = 1e-55
Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 7/156 (4%)
Query: 29 APMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKM 88
P ++ E F D +G+G+IS EL A+ + G +K+
Sbjct: 9 MPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKL 68
Query: 89 ISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE 148
+ K++SG +T+ +F L + + + FR D G++ +R+ +
Sbjct: 69 LHMYDKNHSGEITFDEFKDLHHFIL-------SMREGFRKRDSSGDGRLDSNEVRAALLS 121
Query: 149 LGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
G ++++ Q ++ + D+ G + ++++ +
Sbjct: 122 SGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIF 157
Score = 87.0 bits (216), Expect = 5e-22
Identities = 17/92 (18%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
++E F D G G + + E++ A+ + G++ ++ + ++ + + G L + D++
Sbjct: 94 SMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVE 153
Query: 108 LVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
L ++ F +D + TG+++F
Sbjct: 154 LSIFVCRVRN-------VFAFYDRERTGQVTF 178
Score = 27.6 bits (62), Expect = 1.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 45 QVADIQEAFALFDKEGTGSIS 65
V ++ FA +D+E TG ++
Sbjct: 157 FVCRVRNVFAFYDRERTGQVT 177
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 168 bits (429), Expect = 7e-54
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+ V ++ F + D++G G I+ ++LK + G + ++ +I D SG
Sbjct: 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL-PYNFDLLLDQIDSDGSGK 103
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN-----IA 154
+ Y +F+ + + SK+ I AFR+FD DN G+I+ A L + +
Sbjct: 104 IDYTEFIAAALDRK--QLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRD 161
Query: 155 DEEIQEMINEADKDGDGEINEEEFLHIMK 183
++ MI + DK+ DG+I+ EF +MK
Sbjct: 162 VNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190
Score = 69.6 bits (171), Expect = 3e-15
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 113 MADKDSKEEI---LKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169
+A + + ++ F + DED G I+ L+ + G + ++++ D DG
Sbjct: 42 IAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL-PYNFDLLLDQIDSDG 100
Query: 170 DGEINEEEFLHIMKK 184
G+I+ EF+
Sbjct: 101 SGKIDYTEFIAAALD 115
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 164 bits (417), Expect = 8e-53
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 50 QEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLV 109
+ F D G G++S +E+K + ++ ++ + I D +G + +F
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 110 TQKMADK--DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADK 167
D K + ++L D D GK++ + S + G E++ E + +AD
Sbjct: 63 GSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADA 118
Query: 168 DGDGEINEEEFLHIM 182
+GDG I EEFL
Sbjct: 119 NGDGYITLEEFLEFS 133
Score = 73.3 bits (181), Expect = 2e-17
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
F+ D + G +S+ +++ + ++ +Q + D DG+GEI++ EF
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 184 KT 185
Sbjct: 64 SI 65
Score = 58.7 bits (143), Expect = 1e-11
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+ ++ + L D +G G ++ +E+ + G E++ + + + + G +T +
Sbjct: 72 DDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKADANGDGYITLE 127
Query: 104 DFLHL 108
+FL
Sbjct: 128 EFLEF 132
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 164 bits (417), Expect = 4e-52
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIA-----------MRALGFEPKKEEIKKMI 89
T E+ ++ + F D G G + KEL + L + E+ ++
Sbjct: 34 TTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHIL 93
Query: 90 SEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL 149
+ D +G + Y +F+ + K S+E +L AF+ FD D +GKI+ L +
Sbjct: 94 QSVDFDRNGYIEYSEFVTVCMDKQ-LLLSRERLLAAFQQFDSDGSGKITNEELGRLFGV- 151
Query: 150 GENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ DE +++ E DK+ DGE++ EEF+ +M+K
Sbjct: 152 -TEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185
Score = 73.9 bits (182), Expect = 6e-17
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 103 KDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLR-----------SVAVELGE 151
+ + + K+ + +E+ + FR D + G++ L +L
Sbjct: 23 QAAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDS 82
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+ + E+ ++ D D +G I EF+ +
Sbjct: 83 SQIEAEVDHILQSVDFDRNGYIEYSEFVTVC 113
Score = 29.2 bits (66), Expect = 0.58
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 142 LRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ + +L +E+ ++ + D +GDG+++ +E + +K
Sbjct: 26 MLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRK 68
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 163 bits (415), Expect = 1e-51
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 9/170 (5%)
Query: 25 NATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEE 84
+A A M+K + + F D++G+ S+ E + + LG + E
Sbjct: 15 DAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAE 74
Query: 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRS 144
+ + + ++ SG L ++FL + M+ + I AF D G ++ +LR
Sbjct: 75 AEGVCRKWDRNGSGTLDLEEFLRALRPPMSQ-AREAVIAAAFAKLDRSGDGVVTVDDLRG 133
Query: 145 VA-------VELGENIADEEIQEMINEADK-DGDGEINEEEFLHIMKKTS 186
V V GE DE ++ ++ D + DG++ EF S
Sbjct: 134 VYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVS 183
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 161 bits (410), Expect = 5e-51
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 20/165 (12%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKEL-----KIAMRALGFEPKKEEIKKMISEISK 94
P + + F D G G I+ E+ L P++ + ++ E
Sbjct: 13 FDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 95 DNSGL-----LTYKDFLHLVTQKMADKDSK----------EEILKAFRLFDEDNTGKISF 139
G+ + + FL Q + K E F +FD+D +G I+
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 140 ANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
++ G + + E+ + D D G+++ +E
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG 177
Score = 73.6 bits (181), Expect = 9e-17
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFL 106
F +FDK+G+G+I+ E K + G P +E+ + DN+G L +
Sbjct: 113 EWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMT 172
Query: 107 HLVTQKMADKDSKEE 121
D + +
Sbjct: 173 RQHLGFWYTLDPEAD 187
Score = 29.7 bits (67), Expect = 0.43
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIMKKTSL 187
+ + M + D +G+G+I +E +
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASDDIC 51
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 155 bits (395), Expect = 3e-49
Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+++ + + F D + +GS+S +E ++ L P ++++I D +G + +K
Sbjct: 3 DEIKRLGKRFKKLDLDNSGSLSVEEFM-SLPELQQNP---LVQRVIDIFDTDGNGEVDFK 58
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL-GENIADEEIQ--- 159
+F+ V+Q D ++++ AFR++D D G IS L V + G N+ D ++Q
Sbjct: 59 EFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIV 118
Query: 160 -EMINEADKDGDGEINEEEFLHIMKKTSLY 188
+ I ADKDGDG I+ EEF ++ ++
Sbjct: 119 DKTIINADKDGDGRISFEEFCAVVGGLDIH 148
Score = 61.5 bits (150), Expect = 1e-12
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
D D + + K F+ D DN+G +S S+ EL +N +Q +I+ D DG+GE++
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLP-ELQQN---PLVQRVIDIFDTDGNGEVD 56
Query: 175 EEEFLHIM 182
+EF+ +
Sbjct: 57 FKEFIEGV 64
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 150 bits (381), Expect = 1e-46
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 20/164 (12%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKEL-----KIAMRALGFEPKKEEIKKMISEISKD 95
P + + F D G IS E+ I + LG P++ + K E
Sbjct: 10 DNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFG 69
Query: 96 NSGL-----LTYKDFLHLVTQKMADKDSK----------EEILKAFRLFDEDNTGKISFA 140
+G+ + ++ + D+ K F + D+D G I+
Sbjct: 70 GAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLD 129
Query: 141 NLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
++ G + E+ +E D D G+++ +E
Sbjct: 130 EWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLG 173
Score = 71.8 bits (176), Expect = 4e-16
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
F + DK+ G+I+ E K +A G E+ ++ D SG L +
Sbjct: 110 WGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
Query: 108 LVTQKMADKDSKEE 121
D E
Sbjct: 170 QHLGFWYTMDPACE 183
Score = 31.3 bits (71), Expect = 0.11
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIMKKTSL 187
+ M N D + +G+I+ +E ++ +
Sbjct: 16 GRHKHMFNFLDVNHNGKISLDEMVYKASDIVI 47
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 150 bits (381), Expect = 7e-46
Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 22/174 (12%)
Query: 35 SGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK------EEIKKM 88
+ + + + E + FD +G+G + KEL+ ++ L KK E+K
Sbjct: 4 AESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTF 63
Query: 89 ISEISKDNSGLLTYKDFLHLVTQ--------KMADKDSKEEILKAFRLFDEDNTGKISFA 140
+ + + + G + + H++ + S EE +K +R +D D++G I
Sbjct: 64 VDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETE 123
Query: 141 NLRSVAVELGENI--------ADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186
L++ +L E E M+ D + DG++ E ++
Sbjct: 124 ELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQE 177
Score = 122 bits (308), Expect = 5e-35
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK--------EEIKKMISEISKDNSGL 99
+ + + +D + +G I T+ELK ++ L + K E M+ +N G
Sbjct: 104 EFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGK 163
Query: 100 LTYKDFLHLVTQKM-------ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN 152
L + L+ + K +E KAF L+D+D G I L ++ +L E
Sbjct: 164 LELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEK 223
Query: 153 IADEEIQEMINE-----ADKDGDGEINEEEFLHIMKK 184
E I+ G++ + I+
Sbjct: 224 NKQELDINNISTYKKNIMALSDGGKLYRTDLALILSA 260
Score = 52.6 bits (126), Expect = 1e-08
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 26 ATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEI 85
A P+++ KF+ + +AF L+D++G G I EL ++ L + K+E
Sbjct: 170 ARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELD 229
Query: 86 KKMISEISK-----DNSGLLTYKDFLHLVTQK 112
IS K + G L D +++
Sbjct: 230 INNISTYKKNIMALSDGGKLYRTDLALILSAG 261
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 146 bits (369), Expect = 6e-45
Identities = 22/160 (13%), Positives = 59/160 (36%), Gaps = 15/160 (9%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALG---------FEPKKEEIKKMIS 90
+ ++ D G G IS ++ ++ + E ++E ++
Sbjct: 7 SERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVAD 66
Query: 91 EISKDNSGLLTYKDFLHLVTQKMADKDSKEEILK------AFRLFDEDNTGKISFANLRS 144
++ ++ ++ T + +E+ + + D D G +S ++
Sbjct: 67 QLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKA 126
Query: 145 VAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+G ++ D++ N D + +G+I+ +EFL +
Sbjct: 127 FLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVND 166
Score = 69.8 bits (171), Expect = 2e-15
Identities = 14/90 (15%), Positives = 32/90 (35%)
Query: 31 MKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMIS 90
K E V + D + G +S E K ++A+G + ++ +
Sbjct: 86 TDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFN 145
Query: 91 EISKDNSGLLTYKDFLHLVTQKMADKDSKE 120
+ + +G ++ +FL V + +
Sbjct: 146 TLDFNKNGQISRDEFLVTVNDFLFGLEETA 175
Score = 57.1 bits (138), Expect = 1e-10
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 9/82 (10%)
Query: 112 KMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE---------NIADEEIQEMI 162
+ ++ + D G IS + +AV + + +E +
Sbjct: 6 ESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVA 65
Query: 163 NEADKDGDGEINEEEFLHIMKK 184
++ I+ EE
Sbjct: 66 DQLGLAPGVRISVEEAAVNATD 87
Score = 27.0 bits (60), Expect = 2.9
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMI 89
F D G IS E + + F ++ +
Sbjct: 138 DKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLEETALANAF 180
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 142 bits (361), Expect = 8e-44
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
+ + I E F D GS+S +E+ + ++G KK +I +++ + ++ G +
Sbjct: 33 VINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGI--KKWDINRILQALDINDRGNI 90
Query: 101 TYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQE 160
TY +F+ + + AF D+D G IS +++ S+ + + + +I
Sbjct: 91 TYTEFMAGCYRWK--NIESTFLKAAFNKIDKDEDGYISKSDIVSLV--HDKVLDNNDIDN 146
Query: 161 MINEADKDGDG--------EINEEEFLHIMKKT 185
G +I+ +EF M T
Sbjct: 147 FFLSVHSIKKGIPREHIINKISFQEFKDYMLST 179
Score = 65.0 bits (159), Expect = 9e-14
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 108 LVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADK 167
+ + + + I + F D ++ G +S + +V +G I +I ++ D
Sbjct: 27 MAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDI 84
Query: 168 DGDGEINEEEFLHIMKK 184
+ G I EF+ +
Sbjct: 85 NDRGNITYTEFMAGCYR 101
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 141 bits (357), Expect = 1e-43
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 83 EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANL 142
K M+ E + Y+D L ++ +KM ++ E+ K F L + I+ +L
Sbjct: 3 PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESL 62
Query: 143 RSVAVELG-ENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186
R + LG E ++ E+ Q M+ E D DGDG +N+ EF +M + S
Sbjct: 63 RRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLS 107
Score = 65.8 bits (161), Expect = 2e-14
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEP-KKEEIKKMISEISKDNSGLLTYKDFL 106
++ + F+L I+ + L+ LG E KE+ + M+ E D G L +F
Sbjct: 41 ELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFC 100
Query: 107 HLVTQKMAD--KDSKEEILKAFRLFDEDNTGKIS 138
L+ + + +D++ + KA E +S
Sbjct: 101 VLMVRLSPEMMEDAETWLEKALT--QELCNHNLS 132
Score = 46.2 bits (110), Expect = 5e-07
Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 4/127 (3%)
Query: 47 ADIQEAFALFDKEGTGSISTKE-LKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDF 105
+ ++ L + + E E+ K S ++ L+T +
Sbjct: 3 PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESL 62
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADE---EIQEMI 162
+ SKE+ R D D G ++ + V L + ++ +++ +
Sbjct: 63 RRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKAL 122
Query: 163 NEADKDG 169
+ +
Sbjct: 123 TQELCNH 129
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 140 bits (355), Expect = 7e-43
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 43 PEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEP-KKEEIKKMISEISKDNSGLLT 101
+ + F DK+ +G IS EL+ A+ + P ++ +IS ++N +
Sbjct: 3 LPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVN 62
Query: 102 YKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEM 161
+ +F + + FR +D DN+G I L+ G ++D+ +
Sbjct: 63 FSEFTGVWKYIT-------DWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDIL 115
Query: 162 INEADKDGDGEINEEEFLHIM 182
I + D+ G G+I ++F+
Sbjct: 116 IRKFDRQGRGQIAFDDFIQGC 136
Score = 80.7 bits (200), Expect = 1e-19
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 46 VADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDF 105
+ D Q F +D++ +G I ELK A+ G+ + +I + + G + + DF
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
+ + FR +D D G I
Sbjct: 133 IQGCIVLQ-------RLTDIFRRYDTDQDGWIQV 159
Score = 63.8 bits (156), Expect = 2e-13
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 114 ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN-IADEEIQEMINEADKDGDGE 172
A + + F+ D+D +G IS L+ ++ +I+ D++
Sbjct: 1 AALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAG 60
Query: 173 INEEEFLHIMKK 184
+N EF + K
Sbjct: 61 VNFSEFTGVWKY 72
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 141 bits (357), Expect = 8e-43
Identities = 23/164 (14%), Positives = 58/164 (35%), Gaps = 21/164 (12%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALG---------FEPKKEEIKKMIS 90
+L P+ ++ + + F FD + G + E+ + E ++ ++
Sbjct: 29 DLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFL 88
Query: 91 EISKDNSGLLTYKDFLHLVTQKMADKDSKEEILK----------AFRLFDEDNTGKISFA 140
+ L +D++ + +E + + + D+D G +
Sbjct: 89 HKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVD 148
Query: 141 NLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
L+++ + E +AD D G++ E +H+ +K
Sbjct: 149 ELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERTELVHLFRK 190
Score = 27.9 bits (62), Expect = 1.6
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKM 88
F D + +G + EL R EP + +
Sbjct: 162 EAAYTFFEKADTDKSGKLERTELVHLFRKFWMEPYDPQWDGV 203
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 141 bits (358), Expect = 1e-41
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 8/145 (5%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
L+ E +++ F G+G S ++LK + + +KK+ + D G
Sbjct: 115 MLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGR 174
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
++Y + + + ++ FR D ++ G +S R V LG +
Sbjct: 175 MSYITLVAV-------ANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDK-KSVQD 226
Query: 160 EMINEADKDGDGEINEEEFLHIMKK 184
+ AD+D ++ E++H+
Sbjct: 227 ALFRYADEDESDDVGFSEYVHLGLC 251
Score = 122 bits (308), Expect = 2e-34
Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+A + F D G++S KE + LG KK + +D S + +
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLG-FDKKSVQDALFRYADEDESDDVGFS 243
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG-ENIADEEIQEMI 162
+++HL + + D D +G++S ++ V + A ++ +
Sbjct: 244 EYVHLGL-------CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQF 296
Query: 163 NEADKDGDGEINEEEFLHIMKK 184
+ D D ++ +EF+ ++
Sbjct: 297 SVVDVDDSKSLSYQEFVMLVLL 318
Score = 91.4 bits (227), Expect = 1e-22
Identities = 18/148 (12%), Positives = 56/148 (37%), Gaps = 8/148 (5%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFE---PKKEEIKKMISEISKDN 96
++ + + A +D++ +E R +K+ + ++ ++ D
Sbjct: 44 AQIAQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDA 103
Query: 97 SGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADE 156
SG + +++ ++ + + F +GK SF +L+ V + + I +
Sbjct: 104 SGYNRLRPSKPMLS-----EEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEG 158
Query: 157 EIQEMINEADKDGDGEINEEEFLHIMKK 184
++++ + D G ++ + +
Sbjct: 159 PLKKLFVMVENDTKGRMSYITLVAVAND 186
Score = 60.6 bits (147), Expect = 2e-11
Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALGFE-PKKEEIKKMISEISKDNSGLLTYK 103
+ ++ +A D + +G +S +E++ + +++ + S + D+S L+Y+
Sbjct: 251 CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ 310
Query: 104 DFLHLVTQKMADK 116
+F+ LV D
Sbjct: 311 EFVMLVLLMFHDD 323
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 133 bits (337), Expect = 3e-40
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEI---------------KKM 88
E I F FD++G G I + A +A+ E + +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 89 ISEISKDNSGLLTYKDFLHLVTQKMADKDSKEE------ILKAFRLFDEDNTGKISFANL 142
+D +T ++F+ +++ DK + + A + D D G ++ A+
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 143 RSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
G + ++ ++ D DGDG++ E E +
Sbjct: 121 ARALTAFG--VPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
Score = 64.8 bits (158), Expect = 9e-14
Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 31 MKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMIS 90
+K+ + A + D +G G+++ + A+ A G + ++ +
Sbjct: 82 VKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPE--DLARQAAA 139
Query: 91 EISKDNSGLLTYKDFLHLVTQ 111
+ D G + + + +
Sbjct: 140 ALDTDGDGKVGETEIVPAFAR 160
Score = 64.8 bits (158), Expect = 1e-13
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE---------------NIADEEIQEM 161
+ + I F FD+D G I ++ A + A+ Q +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 162 INEADKDGDGEINEEEFLHIMKK 184
AD+DGD I EEF+ K
Sbjct: 61 AGIADRDGDQRITREEFVTGAVK 83
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 133 bits (337), Expect = 6e-40
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 25/168 (14%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
+ + + F D+ G +S +L+ + AL P + +I D S +
Sbjct: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQ-QIGALAVNPLGDR---IIESFFPDGSQRV 78
Query: 101 TYKDFLHLVTQKMADKDSK----------------EEILKAFRLFDEDNTGKISFANLRS 144
+ F+ ++ +D ++ AF+L+D D GKIS +
Sbjct: 79 DFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQ 138
Query: 145 VAVEL-GENIADEEIQ----EMINEADKDGDGEINEEEFLHIMKKTSL 187
V + G + +E+++ + EAD+DGDG ++ EF ++K +
Sbjct: 139 VLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKMDV 186
Score = 58.6 bits (142), Expect = 3e-11
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 27 TAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEE-- 84
+ K E + + AF L+D + G IS E+ +R + EE
Sbjct: 94 EDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQL 153
Query: 85 ---IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILK 124
+ + E +D G +++ +F + + ++ ILK
Sbjct: 154 ENIADRTVQEADEDGDGAVSFVEFTKSLEKMDVEQKMSIRILK 196
Score = 55.9 bits (135), Expect = 4e-10
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 96 NSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD 155
+S D + + + S + FR D + G +S +L+ + L N
Sbjct: 5 SSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIG-ALAVN--- 60
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIM 182
+I DG ++ F+ ++
Sbjct: 61 PLGDRIIESFFPDGSQRVDFPGFVRVL 87
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 128 bits (322), Expect = 2e-37
Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 12/160 (7%)
Query: 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIA-MRALGFEPKKEEIKKMI-------- 89
E T E E F FDK TG + E+ + L + ++ +
Sbjct: 40 REKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSR 99
Query: 90 -SEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE 148
+N G + +FL + E+ F D + + +
Sbjct: 100 TLGSKLENKGSEDFVEFLEF-RLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPK 158
Query: 149 LG-ENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSL 187
L E+ + E DK+G G + +EF L
Sbjct: 159 LEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAVKL 198
Score = 58.8 bits (142), Expect = 4e-11
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEP-KKEEIKKMISEISKDNSGLLTY 102
++ F D G + +E K A+ L K E+ + E+ K+ +G +T+
Sbjct: 127 YDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTF 186
Query: 103 KDFLHLVTQKMADKDSKEEILK 124
+F + D D + +
Sbjct: 187 DEFAAWASAVKLDADGDPDNVP 208
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 126 bits (318), Expect = 2e-37
Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 42 TPEQVADIQEAFALFDKEGTGSISTKELKIA----MRALGFEPKKEEIKK---------- 87
T +++ F +D +G G++ + + A G + E++
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 88 -MISEISKDNSGLLTYKDFLHLVTQKMADKDS-------KEEILKAFRLFDEDNTGKISF 139
+ E + G LT + F+ + + ++ + + D++ G+I+
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINA 121
Query: 140 ANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
+ LG ++ E E N+ D +G+GE++ +E L ++
Sbjct: 122 DEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163
Score = 63.6 bits (155), Expect = 3e-13
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 25 NATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEE 84
T + + F ++ + DK G I+ E + ALG E
Sbjct: 82 RVTENLIFEQGEASFN--RVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSK--AE 137
Query: 85 IKKMISEISKDNSGLLTYKDFLHLVTQ 111
+ +++ + +G L+ + L V
Sbjct: 138 AAEAFNQVDTNGNGELSLDELLTAVRD 164
Score = 61.3 bits (149), Expect = 3e-12
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 119 KEEILKAFRLFDEDNTGKISFANL----RSVAVELGENIADEEIQE-----------MIN 163
+ + K F +D D G + A+ + +A G++ E+Q +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 164 EADKDGDGEINEEEFLHIMKK 184
EA DG + EE+F+ + +
Sbjct: 66 EAGVGSDGSLTEEQFIRVTEN 86
Score = 31.3 bits (71), Expect = 0.11
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 153 IADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
IA + +++ + D DG+G + +F +
Sbjct: 4 IASDRLKKRFDRWDFDGNGALERADFEKEAQH 35
Score = 29.3 bits (66), Expect = 0.44
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGF 78
A+ EAF D G G +S EL A+R F
Sbjct: 136 AEAAEAFNQVDTNGNGELSLDELLTAVRDFHF 167
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 121 bits (306), Expect = 5e-35
Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%)
Query: 22 SIPNATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPK 81
+P + P + +Q I + F D++ +G++ EL + G
Sbjct: 28 QMPPSVRNTWWFPLLN--TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLS 85
Query: 82 KEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFAN 141
+ +M+ D +G +++ +F+ + + M E F + +G +
Sbjct: 86 PQTALRMMRIFDTDFNGHISFYEFMAM-YKFM------ELAYNLFVMNARARSGTLEPHE 138
Query: 142 LRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+ +LG I ++ +++ G + ++ I
Sbjct: 139 ILPALQQLGFYI-NQRTSLLLHRLFARGMAFCDLNCWIAIC 178
Score = 64.8 bits (158), Expect = 3e-13
Identities = 16/70 (22%), Positives = 27/70 (38%)
Query: 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
D I + F D D +G + L G ++ + M+ D D +G I+
Sbjct: 46 PLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHIS 105
Query: 175 EEEFLHIMKK 184
EF+ + K
Sbjct: 106 FYEFMAMYKF 115
Score = 50.9 bits (122), Expect = 3e-08
Identities = 8/94 (8%), Positives = 28/94 (29%), Gaps = 3/94 (3%)
Query: 46 VADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDF 105
+ F + + +G++ E+ A++ LGF + ++ + +
Sbjct: 116 MELAYNLFVMNARARSGTLEPHEILPALQQLGFYIN-QRTSLLLHRLFARGMAFCDLNCW 174
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
+ + + + + I +
Sbjct: 175 IAICAFAAQTRSAYQMIFM--NPYYGPMKPFNPM 206
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 118 bits (297), Expect = 3e-34
Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 17/157 (10%)
Query: 42 TPEQVADIQEAFALFDKEGTGSISTKELKIAMRALG--FEPKKEEIKKMISEISK----- 94
+ V ++ F D + G+I+ + + E K E K ++ ++
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF 60
Query: 95 ----DNSGLLTYKDFLHLVTQKMADKDSKEEILK----AFRLFDEDNTGKISFANLRSVA 146
+ F++ + + + + ++K + FR D + IS
Sbjct: 61 LTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF 120
Query: 147 VELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
LG + + D + DG ++ EEF+
Sbjct: 121 GMLG--LDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155
Score = 61.7 bits (150), Expect = 2e-12
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 28 AAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKK 87
+ + P+ + + F D +IS E I LG +
Sbjct: 77 NSMKEMVKNPEAK--SVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDK--TMAPA 132
Query: 88 MISEISKDNSGLLTYKDFLHLVTQ 111
I +N GLL+ ++F+ +
Sbjct: 133 SFDAIDTNNDGLLSLEEFVIAGSD 156
Score = 32.4 bits (74), Expect = 0.046
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIMKK 184
++++ N D D DG I +F + ++
Sbjct: 6 QKMKTYFNRIDFDKDGAITRMDFESMAER 34
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 114 bits (289), Expect = 8e-34
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 80 PKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
K ++IKK + + G +K F LV K S ++ K F+ D D +G I
Sbjct: 7 LKADDIKKALDAV--KAEGSFNHKKFFALVGLKA---MSANDVKKVFKAIDADASGFIEE 61
Query: 140 ANLRSVAVEL---GENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185
L+ V G ++ D E + + ADKDGDG+I +EF ++ +
Sbjct: 62 EELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHEA 110
Score = 58.4 bits (142), Expect = 6e-12
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNSGLLTYKD 104
D+++ F D + +G I +ELK +++ + + E K + KD G + +
Sbjct: 43 DVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDE 102
Query: 105 FLHLVTQ 111
F LV +
Sbjct: 103 FETLVHE 109
Score = 34.9 bits (81), Expect = 0.003
Identities = 4/34 (11%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 149 LGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+ + ++I++ ++ +G N ++F ++
Sbjct: 3 AKDLLKADDIKKALDAV--KAEGSFNHKKFFALV 34
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 119 bits (299), Expect = 1e-33
Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 28/171 (16%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGF----------EPKKEEIKKMIS 90
A + + FD + G I KEL R + E ++ K +S
Sbjct: 5 FANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMS 64
Query: 91 EISKDNSGLLTYKDFLHLV----------TQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
G L ++ +++ ++ A D+ E +K +R +D D++G IS A
Sbjct: 65 AYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAA 124
Query: 141 NLRSVAVELG--------ENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
L++ +L N DE M+ DK+ DG ++ + I+
Sbjct: 125 ELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILA 175
Score = 106 bits (266), Expect = 1e-28
Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 27/163 (16%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK--------EEIKKMISEISKDNSGL 99
+ + + +D + +G IS ELK ++ L + KK E M+ K+ G
Sbjct: 105 EFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGR 164
Query: 100 LTYKDFLHLVTQK-----------MADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE 148
L D ++ + + + K + K F +D TG + + +
Sbjct: 165 LDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKD 224
Query: 149 LGENIA--------DEEIQEMINEADKDGDGEINEEEFLHIMK 183
+ E + D+ + ++ D + DG+I + E +
Sbjct: 225 MMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267
Score = 50.8 bits (121), Expect = 3e-08
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD----------EEIQEMINE 164
L+ ++ FD D+ G I L + + + + + ++
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSA 65
Query: 165 ADKDGDGEINEEEFLHIMKKT 185
D DG + EE +++
Sbjct: 66 YDATFDGRLQIEELANMILPQ 86
Score = 45.8 bits (108), Expect = 2e-06
Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK--------EEIKKMISEISKD 95
E+ D ++ FA +D TG++ E+ ++ + + + + +++ +
Sbjct: 193 ERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMN 252
Query: 96 NSGLLTYKDFLHLVTQKM 113
G + + + K
Sbjct: 253 KDGKIQKSELALCLGLKH 270
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 116 bits (292), Expect = 3e-33
Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 26/168 (15%)
Query: 40 ELTPEQVADIQEAF-ALFDKEGTGSISTKELKIAMRALGF-------EPKKEEIKK---- 87
+L+ Q I F +D G I + ++A++ + K E +
Sbjct: 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKL 64
Query: 88 ----MISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKA--------FRLFDEDNTG 135
+ ++ +T +++L + + + + E + + F + D
Sbjct: 65 IWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDN 124
Query: 136 KISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
I +V + G I + + G + E F +
Sbjct: 125 IIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
Score = 61.0 bits (148), Expect = 4e-12
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 25 NATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEE 84
A +K + L + F + D G I E + G +
Sbjct: 88 KMWAECVKSVEKGE-SLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPK--SD 144
Query: 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADKD 117
+S ++T + F L T+ D
Sbjct: 145 CDAAFDTLSDGGKTMVTREIFARLWTEYFVSND 177
Score = 52.5 bits (126), Expect = 5e-09
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 119 KEEILKAFR-LFDEDNTGKISFANLRSVAVELGE---------------NIADEEIQEMI 162
+ +IL+ F +D ++ G I + + ++ +
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 163 NEADKDGDGEINEEEFLHIMKKT 185
AD++ D ++ +EE+L + +
Sbjct: 71 KYADENEDEQVTKEEWLKMWAEC 93
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 112 bits (282), Expect = 5e-33
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 102 YKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEM 161
+ L+ + M D DS+EEI +AFR+ D+D G IS A LR V LGE + DEE+ EM
Sbjct: 12 SGENLYFQS-LMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 70
Query: 162 INEADKDGDGEINEEEFLHIMKK 184
I EAD DGDG++N EEF+ +M
Sbjct: 71 IREADIDGDGQVNYEEFVQMMTA 93
Score = 72.3 bits (178), Expect = 2e-17
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
+I+EAF + DK+G G IS EL+ M LG + EE+ +MI E D G + Y++F+
Sbjct: 30 EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 89
Query: 108 LVTQK 112
++T K
Sbjct: 90 MMTAK 94
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 111 bits (280), Expect = 1e-32
Identities = 36/77 (46%), Positives = 56/77 (72%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
L+ EQ +I+EAF LFD TGSI ELK+AMRALGF+ KK EI ++++E ++ +G +
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYI 60
Query: 101 TYKDFLHLVTQKMADKD 117
+ DFL ++T+K+ ++D
Sbjct: 61 GFDDFLDIMTEKIKNRD 77
Score = 79.9 bits (198), Expect = 2e-20
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
++ K+EI +AF LFD + TG I + L+ LG ++ EI E++NE D++G+G I
Sbjct: 3 EEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGF 62
Query: 176 EEFLHIMKK 184
++FL IM +
Sbjct: 63 DDFLDIMTE 71
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 110 bits (278), Expect = 4e-32
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
K ++I K IS + G YK F HLV K + ++ + F + D+D +G I
Sbjct: 7 KADDINKAISAF--KDPGTFDYKRFFHLVGLKG---KTDAQVKEVFEILDKDQSGFIEEE 61
Query: 141 NLRSVAVEL---GENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
L+ V G ++ D E + ++ D D DG+I +EF ++ +
Sbjct: 62 ELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVAQ 108
Score = 57.6 bits (140), Expect = 1e-11
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNSGLLTYKD 104
++E F + DK+ +G I +ELK ++ + E K +++ D+ G + +
Sbjct: 42 QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADE 101
Query: 105 FLHLVTQ 111
F +V Q
Sbjct: 102 FAKMVAQ 108
Score = 31.0 bits (71), Expect = 0.082
Identities = 5/34 (14%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 149 LGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+ + + ++I + I+ G + + F H++
Sbjct: 2 MTKVLKADDINKAISAF--KDPGTFDYKRFFHLV 33
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 110 bits (276), Expect = 5e-32
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 35 SGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISK 94
S K LT E+ + +EAF LFDK+ ++ +EL MRALG P K++I +++ + K
Sbjct: 2 SEQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDK 61
Query: 95 DNSGLLTYKDFLHLVTQKMADKDS 118
DNSG + FL ++ + + DS
Sbjct: 62 DNSGKFDQETFLTIMLEYGQEVDS 85
Score = 80.8 bits (200), Expect = 1e-20
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 111 QKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGD 170
+K+ + ++E +AF+LFD+DN K++ L +V LG N ++I E++ + DKD
Sbjct: 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNS 64
Query: 171 GEINEEEFLHIMKK 184
G+ ++E FL IM +
Sbjct: 65 GKFDQETFLTIMLE 78
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 113 bits (285), Expect = 5e-32
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 24/167 (14%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
+ Q+ + F DK G++S ++ + + L P + I I+ + +
Sbjct: 23 FSHSQITRLYSRFTSLDKGENGTLSREDFQ-RIPELAINPLGDRI---INAFFSEGEDQV 78
Query: 101 TYKDFLHLVTQKMADKDSKEEILK---------------AFRLFDEDNTGKISFANLRSV 145
++ F+ + +D+++ AFRL+D D KIS L V
Sbjct: 79 NFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQV 138
Query: 146 AVEL-GENIADEEIQE----MINEADKDGDGEINEEEFLHIMKKTSL 187
+ G NI+DE++ I EAD+DGD I+ EF+ +++K +
Sbjct: 139 LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDV 185
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 107 bits (270), Expect = 4e-31
Identities = 35/71 (49%), Positives = 52/71 (73%)
Query: 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
D D++EE+ +AF++FD+D G IS + LR V + LGE + DEE+++MI EAD DGDG++N
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63
Query: 175 EEEFLHIMKKT 185
EEF+ +M
Sbjct: 64 YEEFVKMMMTV 74
Score = 87.7 bits (218), Expect = 2e-23
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+ + +++EAF +FDK+ G IS EL+ M LG + EE+++MI E D G
Sbjct: 2 HMDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ 61
Query: 100 LTYKDFLHLVTQKMADK--DSKEEILKAFR 127
+ Y++F+ ++ + + + F
Sbjct: 62 VNYEEFVKMMMTVRGGGGGNGWSRLRRKFS 91
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 106 bits (266), Expect = 8e-31
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
+ E++ AFR FD+D G I+ LR LG+ + EE+ MI EAD D DG +N
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 176 EEFLHIMKK 184
EEF ++ +
Sbjct: 62 EEFARMLAQ 70
Score = 74.1 bits (183), Expect = 3e-18
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+ D+Q AF FD++G G I+ EL+ AM LG +EE+ MI E D G + Y+
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYE 62
Query: 104 DFLHLVTQK 112
+F ++ Q+
Sbjct: 63 EFARMLAQE 71
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 105 bits (264), Expect = 2e-30
Identities = 28/71 (39%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN-IADEEIQEMINEADKDGDGEIN 174
+D +EEIL+AF++FD + G I F + + ++GE + D E++E + EAD+DG+G I+
Sbjct: 4 QDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID 63
Query: 175 EEEFLHIMKKT 185
EF+ ++KK+
Sbjct: 64 IPEFMDLIKKS 74
Score = 78.0 bits (193), Expect = 1e-19
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEP-KKEEIKKMISEISKDNSGL 99
+ + +I AF +FD G G I E K M+ +G EP E+++ + E +D +G+
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGV 61
Query: 100 LTYKDFLHLVTQKMADKD 117
+ +F+ L+ +
Sbjct: 62 IDIPEFMDLIKKSKNALK 79
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 108 bits (271), Expect = 5e-30
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 14/158 (8%)
Query: 30 PMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPK-----KEE 84
P P P Q D + G I EL+ + G E
Sbjct: 15 PGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLET 74
Query: 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRS 144
+ M+S + +D SG + + +F L + F FD D +G + L+
Sbjct: 75 CRLMVSMLDRDMSGTMGFNEFKELWAVLN-------GWRQHFISFDTDRSGTVDPQELQK 127
Query: 145 VAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+G ++ + + + +G+I ++++
Sbjct: 128 ALTTMGFRLSPQAVNSIAKRYST--NGKITFDDYIACC 163
Score = 68.3 bits (167), Expect = 9e-15
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
++ F FD + +G++ +EL+ A+ +GF + + + S + G +T+ D++
Sbjct: 104 GWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFDDYIA 161
Query: 108 LVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
+ A + +FR D G ++F
Sbjct: 162 CCVKLRA-------LTDSFRRRDTAQQGVVNF 186
Score = 51.7 bits (124), Expect = 1e-08
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIA-----DEEIQEMINEADKDGDG 171
++ L + G+I L+ + G E + M++ D+D G
Sbjct: 29 GQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSG 88
Query: 172 EINEEEFLHIMKK 184
+ EF +
Sbjct: 89 TMGFNEFKELWAV 101
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 103 bits (259), Expect = 2e-29
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 28 AAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKK 87
A+ + + + L+ E +A+ + AF +FD +G G ISTKEL MR LG P KEE+
Sbjct: 1 ASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDA 60
Query: 88 MISEISKDNSGLLTYKDFLHLVTQKMAD 115
+I E+ +D SG + +++FL ++ ++M +
Sbjct: 61 IIEEVDEDGSGTIDFEEFLVMMVRQMKE 88
Score = 88.0 bits (219), Expect = 2e-23
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 111 QKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGD 170
+ ++ E AF +FD D G IS L +V LG+N EE+ +I E D+DG
Sbjct: 11 RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGS 70
Query: 171 GEINEEEFLHIMKK 184
G I+ EEFL +M +
Sbjct: 71 GTIDFEEFLVMMVR 84
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 103 bits (260), Expect = 2e-29
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 75 ALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNT 134
A ++ + + + YK F V S ++I KAF + D+D +
Sbjct: 2 AFSGILADADVAAALKAC--EAADSFNYKAFFAKVGLTA---KSADDIKKAFFVIDQDKS 56
Query: 135 GKISFANLRSVAVEL---GENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
G I L+ + D E + + D DGDG I +E+ ++K
Sbjct: 57 GFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK 108
Score = 56.5 bits (137), Expect = 4e-11
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNS 97
LT + DI++AF + D++ +G I ELK+ ++ + E K + D
Sbjct: 36 LTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGD 95
Query: 98 GLLTYKDFLHLVT 110
G + ++ LV
Sbjct: 96 GAIGVDEWAALVK 108
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 105 bits (263), Expect = 2e-29
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSG 98
E PE++ +E + FD G I LK M LG E+KKMISE++ S
Sbjct: 42 EENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSD 101
Query: 99 LLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGK 136
++Y+DF++++ K +LK +F+
Sbjct: 102 TISYRDFVNMMLGKR------SAVLKLVMMFEGKANES 133
Score = 82.2 bits (203), Expect = 2e-20
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 78 FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKI 137
F K ++ ++EI+++ Y D +L + + + FD +N G+I
Sbjct: 15 FGILKARQERRLAEINREFLCDQKYSDEENL-------PEKLTAFKEKYMEFDLNNEGEI 67
Query: 138 SFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+L+ + +LG E+++MI+E I+ +F+++M
Sbjct: 68 DLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLG 114
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 103 bits (258), Expect = 4e-29
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
K ++ ++ S +S +K+F V S +++ KAF + D+D +G I
Sbjct: 7 KDADVAAALAACSAADS--FKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEED 61
Query: 141 NLRSVAVEL---GENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
L+ + D E + + + DKDGDG I +EF ++K
Sbjct: 62 ELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107
Score = 59.1 bits (144), Expect = 4e-12
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNSGLLTYKD 104
D+++AF + D++ +G I ELK+ ++ + E K +++ KD G++ +
Sbjct: 42 DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
Query: 105 FLHLVT 110
F ++
Sbjct: 102 FAAMIK 107
Score = 33.7 bits (78), Expect = 0.009
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+ D ++ + +EF +
Sbjct: 5 GLKDADVAAALAAC--SAADSFKHKEFFAKV 33
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 100 bits (252), Expect = 1e-28
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 121 EILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLH 180
+ F FD++ GK+S R VA+ E+I + E D DG+GE+N +EF
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61
Query: 181 IMKK 184
++K
Sbjct: 62 CIEK 65
Score = 77.5 bits (192), Expect = 1e-19
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFL 106
+ + F FDK G +S E + A +E+I K EI D +G L +F
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60
Query: 107 HLVTQKM 113
+ + +
Sbjct: 61 SCIEKML 67
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 101 bits (254), Expect = 2e-28
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 75 ALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNT 134
++ E+IKK I + +S +K F +V K S +++ K F + D+D +
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADS--FDHKKFFQMVGLKK---KSADDVKKVFHILDKDKS 55
Query: 135 GKISFANLRSVAVEL---GENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185
G I L S+ +++ +E + ++ DKDGDG+I EEF ++ ++
Sbjct: 56 GFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
Score = 59.6 bits (145), Expect = 2e-12
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNS 97
L + D+++ F + DK+ +G I EL ++ + + +E K +++ KD
Sbjct: 35 LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGD 94
Query: 98 GLLTYKDFLHLVTQ 111
G + ++F LV +
Sbjct: 95 GKIGVEEFSTLVAE 108
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 102 bits (256), Expect = 5e-28
Identities = 17/167 (10%), Positives = 50/167 (29%), Gaps = 26/167 (15%)
Query: 41 LTPEQVADIQEAF-ALFDKEGTGSISTKELKIAMRALGF-------EPKKEEIKKMISEI 92
L Q I+ F D GSI + + M + + ++ + +
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 93 S--------KDNSGLLTYKDFLHLVTQKMADKDSKEEILKA--------FRLFDEDNTGK 136
+ +++++++L + + +A S ++ F+ D G
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGI 121
Query: 137 ISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
+ ++ + ++ + N G + + +
Sbjct: 122 VDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKELYY 166
Score = 58.8 bits (142), Expect = 2e-11
Identities = 9/94 (9%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 25 NATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEE 84
+ +L I F D G G + +E + + + +
Sbjct: 84 AMWEKTIATCKSVA-DLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQC--AD 140
Query: 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDS 118
+ + + I+ + L + + +
Sbjct: 141 VPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAA 174
Score = 45.7 bits (108), Expect = 1e-06
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 119 KEEILKAFR-LFDEDNTGKISFANLRSVAVELGE---------------NIADEEIQEMI 162
K++I F D ++ G I + + E ++E +++
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 163 NEADKDGDGEINEEEFLHIMKKT 185
AD + D ++ EE+L + +KT
Sbjct: 67 GRADINKDDVVSWEEYLAMWEKT 89
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 107 bits (268), Expect = 1e-27
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK--------EEIKKMISEI 92
T E+ ++ + F DK G G + KEL L + EE+ ++ E+
Sbjct: 349 TTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEV 408
Query: 93 SKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE- 151
D +G + Y +F+ V S+E + +AF LFD D +GKI+ L ++ G
Sbjct: 409 DFDKNGYIEYSEFI-SVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANL---FGLT 464
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186
+I+++ +++ EAD++ D I+ +EF+ +M K
Sbjct: 465 SISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKIC 499
Score = 59.7 bits (145), Expect = 4e-11
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGE--------NIADEE 157
+ + K+ + ++E+ F+ D++ G++ L L +EE
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400
Query: 158 IQEMINEADKDGDGEINEEEFL 179
+ ++ E D D +G I EF+
Sbjct: 401 VDNILKEVDFDKNGYIEYSEFI 422
Score = 30.1 bits (68), Expect = 0.42
Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 114 ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEI 173
+D+ + L R F+ K++ A + + +L +E+ ++ + DK+GDG++
Sbjct: 315 SDQKTLCGALSNMRKFEGSQ--KLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQL 372
Query: 174 NEEEFLHIMKK 184
+++E +
Sbjct: 373 DKKELIEGYNV 383
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 106 bits (267), Expect = 1e-27
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 42 TPEQVADIQEAFALFDKEGTGSISTKELKIAMRAL--------------GFEPKKEEIKK 87
T ++ + E F D G + EL +++I
Sbjct: 326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDS 385
Query: 88 MISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAV 147
++ + D SG + Y +F+ S+E + +AF++FD+D +GKIS L +
Sbjct: 386 LMPLLDMDGSGSIEYSEFI-ASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFS 444
Query: 148 ELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ +I EE++ +I + D + DGE++ EF+ +++
Sbjct: 445 QADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQN 481
Score = 55.8 bits (135), Expect = 1e-09
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSV--------------AVELGE 151
L + K+ D +++ + FR D +N G + L ++
Sbjct: 317 LLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEG 376
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFL 179
+ +++I ++ D DG G I EF+
Sbjct: 377 STIEDQIDSLMPLLDMDGSGSIEYSEFI 404
Score = 55.5 bits (134), Expect = 1e-09
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 49 IQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHL 108
++ AF +FDK+G+G ISTKEL + EE++ +I ++ + G + + +F+ +
Sbjct: 419 MERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEM 478
Query: 109 VTQKMADKD 117
+ Q +
Sbjct: 479 L-QNFVRNE 486
Score = 32.7 bits (75), Expect = 0.062
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 110 TQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169
T ++D S E + R F + K++ A L +A +L +++ E+ + D +
Sbjct: 287 TPTISDLPSLESAMTNIRQFQAEK--KLAQAALLYMASKLTTLDETKQLTEIFRKLDTNN 344
Query: 170 DGEINEEEFLHIMKK 184
DG ++ +E + +
Sbjct: 345 DGMLDRDELVRGYHE 359
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 106 bits (266), Expect = 2e-27
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK--------EEIKKMISEI 92
+ E+ ++ + F DK G G + +EL L E E+ ++
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 93 SKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN 152
D +G + Y +F+ V SK+++ AF+ FD+D GKIS L SV G +
Sbjct: 400 DFDRNGYIDYSEFV-TVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASV---FGLD 455
Query: 153 -IADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186
+ + +EMI+ D + DG+++ EEF +++K
Sbjct: 456 HLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLC 490
Score = 57.4 bits (139), Expect = 3e-10
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGEN--------IADEE 157
L + K+ ++ +E+ FR D++ G++ L +L + E
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391
Query: 158 IQEMINEADKDGDGEINEEEFL 179
+ ++ AD D +G I+ EF+
Sbjct: 392 VDAILGAADFDRNGYIDYSEFV 413
Score = 51.2 bits (123), Expect = 4e-08
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 49 IQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHL 108
++ AF FD++G G IS EL E + K+MIS I +N G + +++F +
Sbjct: 428 LESAFQKFDQDGNGKISVDELASVFGLDHLES--KTWKEMISGIDSNNDGDVDFEEFCKM 485
Query: 109 VTQKMADKD 117
+ + ++ +
Sbjct: 486 IQKLCSNNE 494
Score = 32.0 bits (73), Expect = 0.090
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 110 TQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169
+ + S ++ R F K++ A L +A +L +E+ ++ DK+G
Sbjct: 302 KESGIELPSLANAIENMRKFQNSQ--KLAQAALLYMASKLTSQEETKELTDIFRHIDKNG 359
Query: 170 DGEINEEEFLHIMKK 184
DG+++ +E + K
Sbjct: 360 DGQLDRQELIDGYSK 374
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 105 bits (265), Expect = 3e-27
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMR-----------ALGFEPKKEEIKKMI 89
+ ++ ++ F DK G G + EL + L + E+ +++
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 90 SEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL 149
+ D +G + Y +F+ V S+E + +AFR+FD DN+GKIS L ++
Sbjct: 389 DAVDFDKNGYIEYSEFV-TVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATI---F 444
Query: 150 GE-NIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
G ++ E + +++E DK+ DGE++ +EF ++ K
Sbjct: 445 GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 480
Score = 58.9 bits (143), Expect = 8e-11
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSV-----------AVELGENIA 154
L + K+ +D +E+ F D++ G++ A L A L +
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 155 DEEIQEMINEADKDGDGEINEEEFL 179
+ E+ ++++ D D +G I EF+
Sbjct: 381 EHEVDQVLDAVDFDKNGYIEYSEFV 405
Score = 29.7 bits (67), Expect = 0.63
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 114 ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEI 173
D S + + R F K++ A L + +L +E+ + ++ DK+GDG++
Sbjct: 295 VDVPSLDNAILNIRQFQGTQ--KLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQL 352
Query: 174 NEEEFLHIMKK 184
+ E + K+
Sbjct: 353 DRAELIEGYKE 363
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 97.8 bits (244), Expect = 2e-26
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 53 FALFDK--EGTGSISTKELKIAMRALGFEPKK-----EEIKKMISEISKDNSGLLTYKDF 105
+ F G + +EL+ + G E + MI+ + +D++G + + F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 106 LHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEA 165
L + F D+D +G + LR +G ++ + + ++
Sbjct: 63 KELWAALN-------AWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115
Query: 166 DKDGDGEINEEEFLHIM 182
K +G I ++++
Sbjct: 116 SK--NGRIFFDDYVACC 130
Score = 66.2 bits (162), Expect = 3e-14
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+ +E F D++G+G++ EL+ A+ +G+ + + ++ SK+ G + +
Sbjct: 67 AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFD 124
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
D++ + A + FR D G +F
Sbjct: 125 DYVACCVKLRA-------LTDFFRKRDHLQQGSANF 153
Score = 48.1 bits (115), Expect = 1e-07
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 126 FRLFDE--DNTGKISFANLRSVAVELGENIA-----DEEIQEMINEADKDGDGEINEEEF 178
+ F G++ L+ + G N E + MI D+D G++ F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 179 LHIMKK 184
+
Sbjct: 63 KELWAA 68
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 95.0 bits (237), Expect = 5e-26
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
++I+ +S +S YK F V + ++I K F + D+D +G I
Sbjct: 8 SAKDIESALSSCQAADS--FNYKSFFSTV---GLSSKTPDQIKKVFGILDQDKSGFIEEE 62
Query: 141 NLRSVAVELGEN---IADEEIQEMINEADKDGDGEINEEEFLHIMK 183
L+ + + E + + D DGDG+I EEF ++K
Sbjct: 63 ELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108
Score = 56.5 bits (137), Expect = 4e-11
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNS 97
L+ + I++ F + D++ +G I +EL++ ++ + E K ++ D
Sbjct: 36 LSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGD 95
Query: 98 GLLTYKDFLHLVT 110
G + ++F LV
Sbjct: 96 GKIGVEEFQSLVK 108
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 95.1 bits (237), Expect = 6e-26
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 31 MKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMIS 90
+ P E P ++ +E + FD G G I LK + LG E+KK+I
Sbjct: 16 LDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIG 75
Query: 91 EISKDNSGLLTYKDFLHLVTQKMAD 115
E+S + +Y DFL ++ K +
Sbjct: 76 EVSSGSGETFSYPDFLRMMLGKRSA 100
Score = 83.6 bits (207), Expect = 2e-21
Identities = 14/69 (20%), Positives = 28/69 (40%)
Query: 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
E + + FD + G I +L+ + +LG E++++I E +
Sbjct: 28 PSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSY 87
Query: 176 EEFLHIMKK 184
+FL +M
Sbjct: 88 PDFLRMMLG 96
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 98.0 bits (244), Expect = 6e-26
Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 40 ELTPEQVADIQEAFALF-DKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSG 98
+ A +QE + F ++ +G++ E K + E + ++ M +
Sbjct: 15 AVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDN 74
Query: 99 LLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSV------------ 145
+ + +++ + + + + E LK F+++D+D G I L +
Sbjct: 75 TIDFLEYVAALNLVL--RGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACS 132
Query: 146 -----AVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ +E + + D++GDG+++ EF+ ++
Sbjct: 133 VEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
Score = 54.4 bits (131), Expect = 1e-09
Identities = 10/72 (13%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 116 KDSKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
++ + ++ F +E +G + + A + ++ M D +GD I+
Sbjct: 18 AADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTID 77
Query: 175 EEEFLHIMKKTS 186
E++ +
Sbjct: 78 FLEYVAALNLVL 89
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 93.5 bits (233), Expect = 1e-25
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
E TP+ +AD + F FD G G IS+ EL A++ LG +E+++M++EI D G
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGF 62
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAF 126
+++ +F A++ +++ K F
Sbjct: 63 ISFDEFTDFA---RANRGLVKDVSKIF 86
Score = 82.3 bits (204), Expect = 2e-21
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 113 MADKDSKEEIL---KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169
MA +D+ ++I + F+ FD + GKIS + L LG ++ +E++ M+ E D DG
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDG 59
Query: 170 DGEINEEEFLHIMKK 184
DG I+ +EF +
Sbjct: 60 DGFISFDEFTDFARA 74
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 91.9 bits (229), Expect = 3e-25
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 117 DSKEEILKAFRLFD--EDNTGKISFANLRSVAVELGENIAD--EEIQEMINEADKDGDGE 172
S EEI AF +F E + +IS L+ V LG ++ + EMI E DK+GDGE
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
Query: 173 INEEEFLHIMKKTS 186
++ EEFL +MKK S
Sbjct: 62 VSFEEFLVMMKKIS 75
Score = 56.1 bits (136), Expect = 2e-11
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 48 DIQEAFALFD-KEG-TGSISTKELKIAMRALG--FEPKKEEIKKMISEISKDNSGLLTYK 103
+I+ AF +F KEG IS +ELK+ M+ LG + +MI E+ K+ G ++++
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Query: 104 DFLHLVTQKM 113
+FL ++ +
Sbjct: 66 EFLVMMKKIS 75
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 92.3 bits (230), Expect = 5e-25
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 75 ALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNT 134
+L +I + + +S + K F + K S ++ + FR+ D D +
Sbjct: 1 SLTDILSPSDIAAALRDCQAPDS--FSPKKFFQISGMS---KKSSSQLKEIFRILDNDQS 55
Query: 135 GKISFANLRSVAVEL---GENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
G I L+ + E + + AD DGDG+I EEF +++
Sbjct: 56 GFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ 107
Score = 63.8 bits (156), Expect = 7e-14
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDN 96
++ + + ++E F + D + +G I ELK ++ + E K ++ D
Sbjct: 34 GMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDG 93
Query: 97 SGLLTYKDFLHLVT 110
G + ++F +V
Sbjct: 94 DGKIGAEEFQEMVQ 107
Score = 38.8 bits (91), Expect = 1e-04
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 113 MADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGE 172
+ D S +I A R S ++ ++ +++E+ D D G
Sbjct: 2 LTDILSPSDIAAALRDCQAP--DSFSPKKFFQISGMSKKSS--SQLKEIFRILDNDQSGF 57
Query: 173 INEEEFLHIMKK 184
I E+E + +++
Sbjct: 58 IEEDELKYFLQR 69
Score = 28.4 bits (64), Expect = 0.60
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 149 LGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTS 186
L + ++ +I + + + ++F I +
Sbjct: 2 LTDILSPSDIAAALRDCQ--APDSFSPKKFFQISGMSK 37
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 92.4 bits (230), Expect = 2e-24
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 16/141 (11%)
Query: 49 IQEAFALFDK--EGTGSISTKELKIAMRALGFEPK-----KEEIKKMISEISKDNSGLLT 101
+ + F G I EL+ + G E + M+S + +D SG +
Sbjct: 1 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 102 YKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEM 161
+ +F L + F FD D +G + L+ +G + + + +
Sbjct: 61 FNEFKELWAVL-------NGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSI 113
Query: 162 INEADKDGDGEINEEEFLHIM 182
G I ++++
Sbjct: 114 AKRYSTSGK--ITFDDYIACC 132
Score = 67.4 bits (165), Expect = 1e-14
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKD 104
+ ++ F FD + +G++ +EL+ A+ +GF + + + SG +T+ D
Sbjct: 70 VLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY--STSGKITFDD 127
Query: 105 FLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
++ + A + +FR D G ++F
Sbjct: 128 YIACCVKLRA-------LTDSFRRRDSAQQGMVNF 155
Score = 43.9 bits (104), Expect = 5e-06
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 126 FRLFDE--DNTGKISFANLRSVAVELGEN-----IADEEIQEMINEADKDGDGEINEEEF 178
+ F G+I L+ + G E + M++ D+D G + EF
Sbjct: 5 YGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 64
Query: 179 LHIMKK 184
+
Sbjct: 65 KELWAV 70
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 89.5 bits (223), Expect = 4e-24
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 95 DNSGLLTYKDFLHLVTQKMADKDSKEEIL---KAFRLFDEDNTGKISFANLRSVAVELGE 151
+SG + D + MA++ S+EEI + F++ D DN+G I+F L+ +G
Sbjct: 1 HSSGHIDDDD------KHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGS 54
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+ + EI+++++ AD D G I+ EF+
Sbjct: 55 ELMESEIKDLMDAADIDKSGTIDYGEFIAAT 85
Score = 86.4 bits (215), Expect = 7e-23
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
L+ E++ ++E F + D + +G+I+ ELK ++ +G E + EIK ++ D SG
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 75
Query: 100 LTYKDFL 106
+ Y +F+
Sbjct: 76 IDYGEFI 82
Score = 32.9 bits (76), Expect = 0.011
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 132 DNTGKISFANLRSVAVELGEN-IADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
++G I + + +A L E I ++E+ D D G I +E +K+
Sbjct: 1 HSSGHIDD-DDKHMAERLSEEEIG--GLKELFKMIDTDNSGTITFDELKDGLKR 51
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 92.6 bits (230), Expect = 7e-24
Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 12/153 (7%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKE-EIKKMISEISKDNSG 98
+ ++ F + +G + E K + G K I ++ + + G
Sbjct: 15 AVPTQETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDG 72
Query: 99 LLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSV------AVELGE 151
+ + +F+ V M ++ E+ LK F+L+D D G I L +
Sbjct: 73 FVDFLEFIAAVNLIM--QEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQT 130
Query: 152 NIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+E I + ++ D + DGE+ EEF++ M K
Sbjct: 131 LSPEEFINLVFHKIDINNDGELTLEEFINGMAK 163
Score = 58.7 bits (142), Expect = 4e-11
Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 82 KEEIKKMISE-ISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
+E + + SGL T +F L+ + ++ + + I + + FD + G + F
Sbjct: 18 TQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFL 77
Query: 141 NLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185
+ + + +++++ D DG+G I++ E L +
Sbjct: 78 EFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAV 122
Score = 46.3 bits (110), Expect = 9e-07
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENI-ADEEIQEMINEADKDGDGEINE 175
+E +R F E +G + +++ G N A++ I ++ N D + DG ++
Sbjct: 17 PTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDF 76
Query: 176 EEFLHIMKKTS 186
EF+ +
Sbjct: 77 LEFIAAVNLIM 87
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 91.8 bits (228), Expect = 1e-23
Identities = 28/154 (18%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 41 LTPEQVADIQEAFALFDKEGT--GSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSG 98
T E+V + E F G I +E ++A+ ++ +G
Sbjct: 31 FTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLF-ADRIFDVFDVKRNG 89
Query: 99 LLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSV--------AVELG 150
++ + +F+ + E++ AF+L+D TG I L+ + + L
Sbjct: 90 VIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLS 149
Query: 151 ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
E++ + + + +AD+ DG+I+ +E+ +
Sbjct: 150 EDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 87.6 bits (218), Expect = 2e-23
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFL 179
+++ + F+ FD + GKIS + L LG + +E+Q M+ E D DGDG I+ EF+
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFNEFI 61
Query: 180 HIMKK 184
Sbjct: 62 SFCNA 66
Score = 86.9 bits (216), Expect = 3e-23
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLH 107
D++ F FD G G IS EL A+R LG +E+++M++EI D G + + +F+
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDGDGFIDFNEFIS 62
Query: 108 LVTQKMADKDSKEEILKAF 126
+++ K F
Sbjct: 63 FCNANP---GLMKDVAKVF 78
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 87.3 bits (217), Expect = 5e-23
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 81 KKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFA 140
E+I + E ++ + F K S ++ FR D D +G +
Sbjct: 7 SAEDIAAALQECQDPDT--FEPQKFFQTSGLS---KMSASQVKDIFRFIDNDQSGYLDGD 61
Query: 141 NLRSVAVEL---GENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
L+ + + + E + +++ AD DGDG+I +EF ++
Sbjct: 62 ELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH 107
Score = 65.0 bits (159), Expect = 2e-14
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK---EEIKKMISEISKDNS 97
L+ + +++ F D + +G + ELK ++ + ++ E K ++ D
Sbjct: 35 LSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGD 94
Query: 98 GLLTYKDFLHLVT 110
G + +F +V
Sbjct: 95 GKIGADEFQEMVH 107
Score = 31.9 bits (73), Expect = 0.042
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 113 MADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGE 172
+ D S E+I A + + +T + + +++++ D D G
Sbjct: 2 ITDILSAEDIAAALQECQDPDT--FEPQKFFQTSGLSKMSA--SQVKDIFRFIDNDQSGY 57
Query: 173 INEEEFLHIMKK 184
++ +E + ++K
Sbjct: 58 LDGDELKYFLQK 69
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 88.4 bits (219), Expect = 6e-23
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 37 PKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDN 96
E P ++ + + FD G G I LK + LG E+K++I E+S +
Sbjct: 38 SNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGS 97
Query: 97 SGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGK 136
+Y DFL ++ K + IL+ +++E N
Sbjct: 98 EETFSYSDFLRMMLGK------RSAILRMILMYEEKNKEH 131
Score = 81.5 bits (201), Expect = 3e-20
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 78 FEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKI 137
F K + ++ + I+K Y + E + FD + G I
Sbjct: 13 FGLLKAQQEERLEGINKQFLDDPKYSN-------DEDLPSKLEAFKVKYMEFDLNGNGDI 65
Query: 138 SFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+L+ + +LG E++ +I E + + +FL +M
Sbjct: 66 DIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG 112
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 89.4 bits (222), Expect = 6e-23
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSI-------STKELKIAMRALGFEPKKEEIKKMISEIS 93
LT +++ F + S+ E +++ L P KE I ++ S
Sbjct: 14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFST-- 71
Query: 94 KDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL---- 149
L+++DFL L++ + AFR+FD D+ G ++ +L + L
Sbjct: 72 SPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG 131
Query: 150 -GENIADEEIQE----MINEADKDGDGEINEEEFLHIMKKTS 186
++ E+++ ++ E+D D DG IN EF H++ ++
Sbjct: 132 EDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSP 173
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 88.2 bits (219), Expect = 1e-22
Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 17/147 (11%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKK--------EEIKKMISEISKD 95
E+V + FA + +S EL + + + + M++ + D
Sbjct: 1 EEVRQFRRLFAQLAGDD-MEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 96 NSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD 155
+G L +++F +L ++ ++ ++ FD D +G I + L G ++ +
Sbjct: 60 TTGKLGFEEFKYLW-------NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHL-N 111
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIM 182
E + MI D G ++ + F+ +
Sbjct: 112 EHLYSMIIRRYSDEGGNMDFDNFISCL 138
Score = 60.5 bits (147), Expect = 5e-12
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYK 103
+ Q + FD + +G+I + EL A A GF + +I S D G + +
Sbjct: 74 NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFD 132
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
+F+ + + + + +AF+ D+D TG+I
Sbjct: 133 NFISCLVR-------LDAMFRAFKSLDKDGTGQIQV 161
Score = 45.5 bits (108), Expect = 1e-06
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIAD--------EEIQEMINEADKDGDG 171
+ + F D+ ++S L ++ ++ D + + M+ D D G
Sbjct: 4 RQFRRLFAQLAGDD-MEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 172 EINEEEFLHIMKK 184
++ EEF ++
Sbjct: 63 KLGFEEFKYLWNN 75
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 85.4 bits (212), Expect = 1e-22
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIA------DEEIQEMINEADKDG 169
K E+ AF+ D + G ++ L++ V L A E ++I ADK+
Sbjct: 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNS 62
Query: 170 DGEINEEEFLHIMKK 184
DG+I++EEFL+ +
Sbjct: 63 DGKISKEEFLNANAE 77
Score = 75.7 bits (187), Expect = 1e-18
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPK------KEEIKKMISEISK 94
+ + A+++ AF D G G ++ EL+ M L KE K+I K
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 95 DNSGLLTYKDFLHLVTQKMADK 116
++ G ++ ++FL+ + +
Sbjct: 61 NSDGKISKEEFLNANAELLCQL 82
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 87.6 bits (217), Expect = 6e-22
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSIST-------KELKIAMRALGFEPKKEEIKKMISEIS 93
LT +++ F + S+ + E +++ L P KE I ++ S
Sbjct: 45 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFST-- 102
Query: 94 KDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVEL---- 149
L+++DFL L++ + AFR+FD D+ G ++ +L + L
Sbjct: 103 SPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG 162
Query: 150 -GENIADEEIQEMIN----EADKDGDGEINEEEFLHIMKKTS 186
++ E++++I+ E+D D DG IN EF H++ ++
Sbjct: 163 EDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSP 204
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 85.6 bits (212), Expect = 2e-21
Identities = 28/155 (18%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEE-IKKMISEISKDNS 97
+ + + + F E +G ++ E K P + +++M +
Sbjct: 7 AVEELSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKD 66
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSVAVELG------ 150
G + + +++ ++ + K ++ L+ F+L+D D G I L ++ +
Sbjct: 67 GYIDFMEYVAALSLVL--KGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCN 124
Query: 151 -ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
A+E + ++ D +GDGE++ EEF+ ++K
Sbjct: 125 EAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
Score = 45.5 bits (108), Expect = 1e-06
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENI-ADEEIQEMINEADKDGDGEINE 175
S E + ++ F E +G+++ + + A++ +++M D + DG I+
Sbjct: 12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDF 71
Query: 176 EEFLHIMKKTS 186
E++ +
Sbjct: 72 MEYVAALSLVL 82
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 85.6 bits (212), Expect = 4e-21
Identities = 28/154 (18%), Positives = 66/154 (42%), Gaps = 11/154 (7%)
Query: 41 LTPEQVADIQEAFALFDKE--GTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSG 98
+ ++ + E F G I+ +E ++A+ + ++ ++G
Sbjct: 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKES-LFADRVFDLFDTKHNG 100
Query: 99 LLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKIS----FANLRSVAVELGENIA 154
+L +++F ++ + ++I +F+L+D G I + + E G N+
Sbjct: 101 ILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLK 160
Query: 155 DEEIQE----MINEADKDGDGEINEEEFLHIMKK 184
D I++ EAD DG+I++EE+ ++ +
Sbjct: 161 DTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 76.8 bits (189), Expect = 4e-18
Identities = 28/159 (17%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEEIKKMI-SEISKDNS 97
+ T +IQ+ F ++ +G ++ ++ + E+ + + KDN+
Sbjct: 18 QSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNN 77
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSV------------ 145
G + +++F+ +++ + +E++ AF L+D ++ G I+F + ++
Sbjct: 78 GFIHFEEFITVLST-TSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMV 136
Query: 146 AVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ E + ++++ DK+ DG I +EF K
Sbjct: 137 TLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
Score = 54.5 bits (131), Expect = 9e-10
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Query: 61 TGSISTKELKIAMRALGFEPKKEEIKKMISE-ISKDNSGLLTYKDFLHLVTQKMADKDSK 119
T +S +L ++ F+ + EI++ + SG L +DF+ + Q +
Sbjct: 5 TSKLSKDDLTCLKQSTYFD--RREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPE 62
Query: 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFL 179
+ F +FD+DN G I F +V +E++ D + DG I +E L
Sbjct: 63 DFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEML 122
Query: 180 HIMK 183
I+
Sbjct: 123 TIVA 126
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 75.3 bits (185), Expect = 2e-17
Identities = 27/159 (16%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMI-SEISKDNSG 98
+ T ++ + + F +G +S +E K + + + + G
Sbjct: 21 DFTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDG 78
Query: 99 LLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSVAVELG------- 150
+ +++F+ ++ + E+ LK AF ++D D G IS A + + +
Sbjct: 79 TIDFREFIIALSVTS--RGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVM 136
Query: 151 -----ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
E+ ++ +++ + D + DG+++ EEF+ K
Sbjct: 137 KMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
Score = 41.8 bits (98), Expect = 4e-05
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEIQEMI-NEADKDGDGEINE 175
++ EI + ++ F + +G +S + + + E + D +GDG I+
Sbjct: 23 TEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDF 82
Query: 176 EEFLHIMKKTS 186
EF+ + TS
Sbjct: 83 REFIIALSVTS 93
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 72.4 bits (178), Expect = 2e-17
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 115 DKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
D + + F D + +G++ R++ EL + + + D D DG I
Sbjct: 22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELRVR--PADAEAVFQRLDADRDGAIT 79
Query: 175 EEEFLHIMKKT 185
+EF +
Sbjct: 80 FQEFARGFLGS 90
Score = 66.6 bits (163), Expect = 3e-15
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+ E++A ++ FA D +G + +E + L P + + + + D G
Sbjct: 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRP--ADAEAVFQRLDADRDGA 77
Query: 100 LTYKDFLHLVTQKM 113
+T+++F +
Sbjct: 78 ITFQEFARGFLGSL 91
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 72.9 bits (179), Expect = 2e-17
Identities = 15/70 (21%), Positives = 25/70 (35%)
Query: 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
I + F FD T IS R++ + + DE+ + NE + G +
Sbjct: 20 TSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKY 79
Query: 176 EEFLHIMKKT 185
+FL
Sbjct: 80 PDFLSRFSSE 89
Score = 62.9 bits (153), Expect = 1e-13
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
+ I + F FD T +IS +E + E+ ++ +E+ + G
Sbjct: 17 KAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGR 76
Query: 100 LTYKDFLHLVTQKMAD 115
L Y DFL + + A
Sbjct: 77 LKYPDFLSRFSSETAA 92
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 69.8 bits (171), Expect = 2e-15
Identities = 30/160 (18%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEEI-KKMISEISKDNS 97
T ++Q+ + F K+ +G ++ E + + + + + D +
Sbjct: 18 RSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKN 77
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSV----------- 145
G + +K+F+ ++ + + L AF+L+D DN G IS+ + +
Sbjct: 78 GYIDFKEFICALSVTS--RGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSM 135
Query: 146 -AVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ E+ ++ + ++ N DK+ DG++ EEF K+
Sbjct: 136 VKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
Score = 56.8 bits (137), Expect = 1e-10
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 63 SISTKELKIAMRALGFEPKKEEIKKMISE-ISKDNSGLLTYKDFLHLVTQKMADKDSKEE 121
+S +L+ +R+ F+ K+E+++ SG L +F + Q D
Sbjct: 7 KLSQDQLQDLVRSTRFD--KKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAF 64
Query: 122 ILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHI 181
F +FD D G I F ++++ D D +G I+ +E L I
Sbjct: 65 AEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRI 124
Query: 182 MK 183
+
Sbjct: 125 VD 126
Score = 37.5 bits (87), Expect = 0.001
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEIQEMI-NEADKDGDGEINE 175
K+E+ + ++ F + +G ++ + + + + E + N D D +G I+
Sbjct: 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDF 82
Query: 176 EEFLHIMKKTS 186
+EF+ + TS
Sbjct: 83 KEFICALSVTS 93
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 65.7 bits (161), Expect = 4e-15
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
F+ D + G +S+ +++ + ++ +Q + D DG+GEI++ EF
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Score = 54.5 bits (132), Expect = 7e-11
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 49 IQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHL 108
+ F D G G++S +E+K + ++ ++ + I D +G + +F
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 109 VT 110
Sbjct: 62 YG 63
Score = 42.9 bits (102), Expect = 1e-06
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 85 IKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
+ + EI + G ++Y++ V K +++ + F+ D D G+I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFV-SKKRAIKNEQLLQLIFKSIDADGNGEIDQ 55
Score = 34.1 bits (79), Expect = 0.003
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 158 IQEMINEADKDGDGEINEEEFLHIMKK 184
+ + E D +GDG ++ EE + K
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSK 28
Score = 30.2 bits (69), Expect = 0.060
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 47 ADIQEAFALFDKEGTGSISTKELKIAMRAL 76
+Q F D +G G I E ++
Sbjct: 36 QLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 70.4 bits (173), Expect = 8e-15
Identities = 19/146 (13%), Positives = 36/146 (24%), Gaps = 20/146 (13%)
Query: 41 LTPEQVADIQEAFALF--DKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSG 98
+ + I+ L G TK M A + E + ++ +
Sbjct: 313 FSVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAF----EPEALGNLVEGLD----- 363
Query: 99 LLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEI 158
+ F K IL D + I++ + L
Sbjct: 364 ---FHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQY---LDAGGIPRTA 417
Query: 159 QEMINEADKDGDGEINEEEFLHIMKK 184
Q DG+ + +H +
Sbjct: 418 QSEETRVWHRRDGKW---QIVHFHRS 440
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 68.8 bits (168), Expect = 1e-14
Identities = 26/160 (16%), Positives = 65/160 (40%), Gaps = 17/160 (10%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEEI-KKMISEISKDNS 97
+ ++Q + F E +G ++ + K + + + D++
Sbjct: 57 AQSKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHN 116
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSV----------- 145
G ++++DF+ ++ + + + +E L AF L+D + G I+ + +
Sbjct: 117 GAVSFEDFIKGLSILL--RGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKC 174
Query: 146 -AVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
L E+ + ++ + DK+ DG + +EF+ +K
Sbjct: 175 TYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
Score = 41.4 bits (97), Expect = 5e-05
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEIQE-MINEADKDGDGEINE 175
+K+E+ +R F +E +G ++ + + + + N D D +G ++
Sbjct: 62 TKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSF 121
Query: 176 EEFLHIMKKTS 186
E+F+ +
Sbjct: 122 EDFIKGLSILL 132
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 66.4 bits (162), Expect = 4e-14
Identities = 29/160 (18%), Positives = 66/160 (41%), Gaps = 17/160 (10%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKEL-KIAMRALGFEPKKEEIKKMISEISKDNS 97
T ++Q+ + F K+ +G + KI + F + + + ++
Sbjct: 18 RKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKD 77
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSV----------- 145
G + + +F+ ++ + + +E L+ AF+L+D DN G I+ + +
Sbjct: 78 GRIEFSEFIQALSVTS--RGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNT 135
Query: 146 -AVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ EN ++ + + DK+ DG++ +EF K
Sbjct: 136 VELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175
Score = 52.2 bits (125), Expect = 7e-09
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 63 SISTKELKIAMRALGFEPKKEEIKKMISE-ISKDNSGLLTYKDFLHLVTQKMADKDSKEE 121
+ + ++ R F ++E+++ I SG L F + Q D +
Sbjct: 7 KLKPEVVEELTRKTYFT--EKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKF 64
Query: 122 ILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHI 181
F +FDE+ G+I F+ DE+++ D D DG I E L I
Sbjct: 65 ATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDI 124
Query: 182 MK 183
+
Sbjct: 125 VD 126
Score = 35.2 bits (81), Expect = 0.005
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEIQEMINEA-DKDGDGEINE 175
+++E+ + ++ F + +G++ A + + + + + D++ DG I
Sbjct: 23 TEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEF 82
Query: 176 EEFLHIMKKTS 186
EF+ + TS
Sbjct: 83 SEFIQALSVTS 93
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 65.2 bits (159), Expect = 9e-14
Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 17/160 (10%)
Query: 40 ELTPEQVADIQEAFALF-DKEGTGSISTKELKIAMRALGFEPKKEEI-KKMISEISKDNS 97
T ++Q + F ++ +G ++ + K + + +
Sbjct: 11 AQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQT 70
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILK-AFRLFDEDNTGKISFANLRSVA---------- 146
G + ++DF+ ++ + + + E L+ F L+D + G I+ + +
Sbjct: 71 GSVKFEDFVTALSILL--RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKY 128
Query: 147 --VELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
L E+ + + + DK+ DG + +EFL ++
Sbjct: 129 TYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
Score = 37.9 bits (88), Expect = 7e-04
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEI-QEMINEADKDGDGEINE 175
+K E+ +R F +E +G ++ + + + + + N D G +
Sbjct: 16 TKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKF 75
Query: 176 EEFLHIMKKTS 186
E+F+ +
Sbjct: 76 EDFVTALSILL 86
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 63.8 bits (155), Expect = 5e-13
Identities = 24/161 (14%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEEI-KKMISEISKDNS 97
T ++ + F K+ TG I+ ++ + + + + + +
Sbjct: 26 LNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLD 85
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELG------- 150
G L +K+++ + + +++ AF L+D D G IS + + + +
Sbjct: 86 GTLDFKEYVIALHM-TTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPED 144
Query: 151 -------ENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
EN ++ +++ K+ D ++ E+EF+
Sbjct: 145 VKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
Score = 53.4 bits (128), Expect = 3e-09
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 58 KEGTGSISTKELKIAMRALGFEPKKEEIKKMISE-ISKDNSGLLTYKDFLHLVTQKMADK 116
+G++S + L+ F +EE+ + +G +T + F + + D
Sbjct: 10 NSKSGALSKEILEELQLNTKFS--EEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDT 67
Query: 117 DSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEE 176
D K FR FD + G + F +++++ + D DG+G I++
Sbjct: 68 DPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKN 127
Query: 177 EFLHIMK 183
E L I+
Sbjct: 128 EVLEIVM 134
Score = 35.7 bits (82), Expect = 0.005
Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEIQE-MINEADKDGDGEINE 175
S+EE+ ++ F + TG+I+ +S+ + + + + + D + DG ++
Sbjct: 31 SEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDF 90
Query: 176 EEFLHIMKKTS 186
+E++ + T+
Sbjct: 91 KEYVIALHMTT 101
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 63.5 bits (154), Expect = 1e-12
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEEI-KKMISEISKDNS 97
T ++Q + F E TG + K+ + + + D +
Sbjct: 84 AQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGN 143
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSV------------ 145
G + ++DF+ ++ + E++ AF L+D + G I+ + ++
Sbjct: 144 GAIHFEDFVVGLSI-LLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHT 202
Query: 146 AVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
L E+ E ++ + D++ DG + +EFL +K
Sbjct: 203 YPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 61.9 bits (150), Expect = 3e-12
Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 15/160 (9%)
Query: 40 ELTPEQVADIQEAFALFDKE-GTGSISTKELKIAMRALGFEPKKEEI-KKMISEISKDNS 97
T ++Q + F E +G ++ + K + + +
Sbjct: 44 AQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQT 103
Query: 98 GLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSV------------ 145
G + ++DF+ ++ + E++ F L+D + G I+ + +
Sbjct: 104 GSVKFEDFVTALSI-LLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYT 162
Query: 146 AVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKT 185
L E+ + + + DK+ DG + +EFL ++
Sbjct: 163 YPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQED 202
Score = 35.0 bits (80), Expect = 0.009
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 118 SKEEILKAFRLF-DEDNTGKISFANLRSVAVELGENIADEEIQE-MINEADKDGDGEINE 175
+K E+ +R F +E +G ++ + + + + + N D G +
Sbjct: 49 TKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKF 108
Query: 176 EEFLHIMKKTS 186
E+F+ +
Sbjct: 109 EDFVTALSILL 119
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 61.8 bits (149), Expect = 1e-11
Identities = 27/131 (20%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGL 99
++ EQ+ + + +F FD++ TG + ++ + + ++G+ + E +++S + + G+
Sbjct: 718 GISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGV 777
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ 159
+T++ F+ ++++ AD D+ ++++ +F++ D I+ LR EL + A+ I
Sbjct: 778 VTFQAFIDFMSRETADTDTADQVMASFKILAGDK-NYITVDELRR---ELPPDQAEYCIA 833
Query: 160 EMINEADKDGD 170
M +D
Sbjct: 834 RMAPYNGRDAV 844
Score = 41.4 bits (96), Expect = 8e-05
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 120 EEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFL 179
E +F FD TG + + R+ + +G N+ + E +++ D + G + + F+
Sbjct: 725 NEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFI 784
Query: 180 HIMKK 184
M +
Sbjct: 785 DFMSR 789
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 55.7 bits (134), Expect = 3e-10
Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 19/131 (14%)
Query: 62 GSISTKELKIAMRALGFEPKK------EEIKKMISEISKDNSGLLTYKDFLHLVTQKMAD 115
I +L+ + +E + +++ + +G L ++F L + +
Sbjct: 19 SDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLV-- 76
Query: 116 KDSKEEILKAFRLFDEDNTGKIS----FANLRSVAVELGENIADEEIQEMINEADKDGDG 171
F+ + G + + + + G I E+ ++ D G
Sbjct: 77 -----HYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFI-SRELLHLVTLRYSDSVG 129
Query: 172 EINEEEFLHIM 182
++ + +
Sbjct: 130 RVSFPSLVCFL 140
Score = 33.0 bits (75), Expect = 0.033
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 44 EQVADIQEAFALFDKEGTGSISTKELKIAMR----ALGFEPKKEEIKKMISEISKDNSGL 99
+++ Q F G + + +L A+ G +E + + S D+ G
Sbjct: 73 KRLVHYQHVFQKVQT-SPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGR 130
Query: 100 LTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTG 135
+++ + + + A + K FR +D G
Sbjct: 131 VSFPSLVCFLMRLEA-------MAKTFRNLSKDGKG 159
Score = 29.9 bits (67), Expect = 0.35
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 127 RLFDE--DNTGKISFANLRSV------AVELGENIADEEIQEMINEADKDGDGEINEEEF 178
I L+ + G+ + +E + ++ + +G +++EEF
Sbjct: 9 HHSSGLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEF 68
Query: 179 LHIMKKTSLY 188
+ K+ Y
Sbjct: 69 ARLWKRLVHY 78
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 53.4 bits (128), Expect = 1e-09
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 102 YKDFLHLVTQKMADKDSKEEI-LKAFRLFDEDNTGKISFANLRSVAV--------ELGEN 152
+ L V K + S +E+ L F++ D D + L + E
Sbjct: 49 IMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPL 108
Query: 153 IADEEIQEMI----NEADKDGDGEINEEEFLHIMK 183
++++E+ +I + DK+ DG I+ EF ++
Sbjct: 109 MSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 143
Score = 36.1 bits (83), Expect = 0.002
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEE------------IKK 87
E++P+++ F + D +G + EL A+ + E E+ I
Sbjct: 63 EMSPQEL--QLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDG 120
Query: 88 MISEISKDNSGLLTYKDFL 106
++ + K+N G + Y +F
Sbjct: 121 VLRDDDKNNDGYIDYAEFA 139
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 50.3 bits (119), Expect = 9e-08
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 122 ILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHI 181
I R D++ K++F L+ EL + D +++ E D + +EE
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 182 MKK 184
K
Sbjct: 73 YKM 75
Score = 45.7 bits (107), Expect = 3e-06
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 6/131 (4%)
Query: 49 IQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHL 108
I DK ++ KELK ++ L + +K+ E + L ++
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 109 VTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRS-VAVELGENIADEEIQEMINEADK 167
EI +AF + +S L + + + E A + + E +
Sbjct: 73 YKMLTQRA----EIDRAFEEAA-GSAETLSVERLVTFLQHQQREEEAGPALALSLIERYE 127
Query: 168 DGDGEINEEEF 178
+ + +
Sbjct: 128 PSETAKAQRQM 138
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 47.0 bits (112), Expect = 1e-07
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 118 SKEEILK---AFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
S E K F D+D G +S +R + ++ G + + + + D G+++
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLS 62
Query: 175 EEEFLHIMK 183
+++F
Sbjct: 63 KDQFALAFH 71
Score = 43.2 bits (102), Expect = 2e-06
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
++P + A E F DK+ G +S E++ G + + S + G L
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP--STLLAHIWSLCDTKDCGKL 61
Query: 101 TYKDF---LHLVTQKMA 114
+ F HL++QK+
Sbjct: 62 SKDQFALAFHLISQKLI 78
Score = 25.0 bits (55), Expect = 7.9
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 153 IADEEIQ---EMINEADKDGDGEINEEEFLHIMKKTSL 187
++ E E+ + DKD DG ++ E I KT L
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGL 41
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 46.3 bits (110), Expect = 2e-07
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 116 KDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
+ S+ + + F D+ +G ++ R++ ++ + ++ + N +D D DG++
Sbjct: 10 QSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLTA 67
Query: 176 EEFLHIMK 183
EEF+ M
Sbjct: 68 EEFILAMH 75
Score = 42.8 bits (101), Expect = 5e-06
Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 34 PSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEIS 93
P ++ + ++ F DK +G ++ + + + + ++ + +
Sbjct: 1 PPVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLP--QAQLASIWNLSD 58
Query: 94 KDNSGLLTYKDF---LHLVTQKMADKD 117
D G LT ++F +HL+ M+ +
Sbjct: 59 IDQDGKLTAEEFILAMHLIDVAMSGQP 85
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 45.5 bits (108), Expect = 3e-07
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 118 SKEEILK---AFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
+ E+ F+ D G I + + + + E+ + +D D DG +
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALT 61
Query: 175 EEEFLHIMK 183
+EF
Sbjct: 62 LDEFCAAFH 70
Score = 42.4 bits (100), Expect = 4e-06
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 39 FELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSG 98
+++T EQ F + G I K E+ + D G
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP--ILELSHIWELSDFDKDG 58
Query: 99 LLTYKDF---LHLVTQKMADKD 117
LT +F HLV + D
Sbjct: 59 ALTLDEFCAAFHLVVARKNGYD 80
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 45.1 bits (107), Expect = 6e-07
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 118 SKEEILK---AFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEIN 174
++E+ FR D + IS + ++ + ++ E+ + +D D DG +
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALT 74
Query: 175 EEEFLHIMK 183
EF
Sbjct: 75 LPEFCAAFH 83
Score = 43.6 bits (103), Expect = 3e-06
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 34 PSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEIS 93
+ +T EQ F + + IS K E+ +
Sbjct: 9 YPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLS--IPELSYIWELSD 66
Query: 94 KDNSGLLTYKDF---LHLVTQKMADKD 117
D G LT +F HL+ +
Sbjct: 67 ADCDGALTLPEFCAAFHLIVARKNGYP 93
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 45.9 bits (108), Expect = 2e-06
Identities = 28/157 (17%), Positives = 66/157 (42%), Gaps = 30/157 (19%)
Query: 50 QEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLV 109
F FD + +GS+S E+++A+ A GF+ + + +++ + D+ ++ + +F+ +
Sbjct: 610 LTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCL 668
Query: 110 TQKMADKDSKEEILKAFRLFDEDNTGKISF------------ANLRSVAVELGENIADEE 157
+ E + K F+ D +NTG I ++ ++
Sbjct: 669 VR-------LEILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSN 721
Query: 158 IQEMINEADK----------DGDGEINEEEFLHIMKK 184
I+ +E ++ D E++ E ++I+ K
Sbjct: 722 IEANESEEERQFRKLFVQLAGDDMEVSATELMNILNK 758
Score = 45.5 bits (107), Expect = 4e-06
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 46/134 (34%)
Query: 50 QEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLV 109
Q + F+ + +G+I + EL A A GF +++ ++
Sbjct: 807 QGIYKRFETDRSGTIGSNELPGAFEAAGF---------HLNQ------------HIYSMI 845
Query: 110 TQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDG 169
++ +D+ G + F N S V L + + DK+G
Sbjct: 846 IRRYSDET-----------------GNMDFDNFISCLVRL------DAMFRAFRSLDKNG 882
Query: 170 DGEI--NEEEFLHI 181
G+I N +E+L +
Sbjct: 883 TGQIQVNIQEWLQL 896
Score = 27.0 bits (59), Expect = 4.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 156 EEIQEMINEADKDGDGEINEEEFLHIMKK 184
E + M+N D+DG+G++ EF + +
Sbjct: 577 ESCRSMVNLMDRDGNGKLGLVEFNILWNR 605
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 45.6 bits (107), Expect = 4e-06
Identities = 17/90 (18%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 50 QEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLV 109
Q+ + D + +G++++ E++ A+ GF+ + + +++ + D+ ++ + +F+ +
Sbjct: 608 QKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCL 666
Query: 110 TQKMADKDSKEEILKAFRLFDEDNTGKISF 139
+ E + K F+ D +NTG I
Sbjct: 667 VR-------LEILFKIFKQLDPENTGTIQL 689
Score = 42.5 bits (99), Expect = 4e-05
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 83 EEIKKMISEISKDNSGLLTYKDFLHLVT--QKMADKDSKEEILKAFRLFDEDNTGKISFA 140
E K M+ + +D SG L K+F L T QK K +R D D +G ++
Sbjct: 575 ETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKY---------QKIYREIDVDRSGTMNSY 625
Query: 141 NLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIM 182
+R E G + + Q ++ D + I+ + F+ +
Sbjct: 626 EMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCL 666
Score = 29.4 bits (65), Expect = 0.83
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 150 GENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
+ + E + M++ D+DG G++ +EF + K
Sbjct: 569 SDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTK 603
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 42.5 bits (100), Expect = 5e-06
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 124 KAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
K +R + NTG++ + + + D + ++ + AD DG G ++++EF ++
Sbjct: 15 KYYRQVEAGNTGRVLALDAAAFL--KKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALR 72
Score = 38.6 bits (90), Expect = 1e-04
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
++ + + TG + + ++ G + K+ D G+L
Sbjct: 5 QLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPD--LILGKIWDLADTDGKGVL 62
Query: 101 TYKDF---LHLVTQKMADKDSKEEILKA 125
+ ++F L LV + L
Sbjct: 63 SKQEFFVALRLVACAQNGLEVSLSSLSL 90
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 41.8 bits (98), Expect = 2e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 118 SKEEILKAFRLFDE--DNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
+ EE K + F +G I+ R+ + G + + ++ AD + DG +++
Sbjct: 28 TVEERAKHDQQFHSLKPISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMDQ 85
Query: 176 EEFLHIMK 183
EF MK
Sbjct: 86 VEFSIAMK 93
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 41.3 bits (97), Expect = 2e-05
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 118 SKEEILKAFRLFDE--DNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
E+ K +FD G +S ++ V + + + + + +D D DG ++
Sbjct: 10 KPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLDR 67
Query: 176 EEFLHIMK 183
+EF M
Sbjct: 68 DEFAVAMF 75
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 42.4 bits (99), Expect = 2e-05
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
Query: 72 AMRALGFEPKK------EEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKA 125
A++ L F K ++K +++ D G+L F + + ++ +
Sbjct: 11 ALKGLQFVTAKVGNDGWAAVEKRFNQLQVD--GVLLRSRFGKCIGMD-GSDEFAVQMFDS 67
Query: 126 FRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMK 183
++ L+ +L + D ++ + DK+ DG + EE I+
Sbjct: 68 LARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIA 125
Score = 33.5 bits (76), Expect = 0.019
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 47 ADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKK--------MISEISKDNSG 98
++ F + DK G ++ +E+K + K +IK+ ++ E+ N G
Sbjct: 98 NRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLG 157
Query: 99 LLTYKDFLHLVTQKMADKDSK 119
+ +D L+ Q ++ ++
Sbjct: 158 YIEMEDLEALLLQSPSEAAAR 178
Score = 31.6 bits (71), Expect = 0.090
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 51 EAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVT 110
++ A ++ ELK L + ++ + K+ G LT ++ ++
Sbjct: 66 DSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIA 125
Query: 111 QKMA-------DKDSKEEILKAFRLFDEDNTGKISFANLRS 144
+ + + E D N G I +L +
Sbjct: 126 LSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEA 166
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 39.6 bits (93), Expect = 3e-05
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 120 EEILKAFRLFD--EDNTGKISFANLRS-VAVELGENIADEE-IQEMINEADKDGDGEINE 175
E+ F + E + ++S L+ + E + + ++ E DK+GDGE++
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
Query: 176 EEFLHIMKK 184
EEF ++KK
Sbjct: 67 EEFQVLVKK 75
Score = 25.4 bits (56), Expect = 4.5
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 94 KDNSGLLTYKDFLHLVTQKMADKDSKEEIL-KAFRLFDEDNTGKISF 139
+ + L+ ++ L+ + L F+ D++ G++SF
Sbjct: 20 EGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 37.4 bits (87), Expect = 3e-04
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-VAVELGENIADEEIQEMINEADKDGDGEINEE 176
I+ + + + N + +L+ + E + I + E D + DG +N +
Sbjct: 10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQ 69
Query: 177 EFLHIMKK 184
EFL ++ K
Sbjct: 70 EFLILVIK 77
Score = 28.6 bits (64), Expect = 0.46
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 94 KDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF 139
K N + D L+ + K+ F+ D + G ++F
Sbjct: 23 KGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNF 68
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 38.5 bits (89), Expect = 5e-04
Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 35/136 (25%)
Query: 53 FALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK 112
++D TG I K + +L +++ + + +++ ++G + L+
Sbjct: 138 LNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDS 196
Query: 113 MADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIA--DEEIQEMINE--ADKD 168
+ + +LGE + I+ + +
Sbjct: 197 IQ------------------------------IPRQLGEVASFGGSNIEPSVRSCFQFAN 226
Query: 169 GDGEINEEEFLHIMKK 184
EI FL M+
Sbjct: 227 NKPEIEAALFLDWMRL 242
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 9e-04
Identities = 37/201 (18%), Positives = 62/201 (30%), Gaps = 55/201 (27%)
Query: 1 MGAH----FRKSNSSPTPI--FVNNNNSIPNATAAPMKKPSGPKFELTPEQV-ADIQEAF 53
+G + ++ P+ + + NN +P +PM S LT EQV + +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVP----SPMLSISN----LTQEQVQDYVNKTN 357
Query: 54 ALFDKEGTGSISTKELKIAMRAL---GFEPK-----KEEIKKMISEISKDNS-------G 98
+ IS L + L G P+ ++K + D S
Sbjct: 358 SHLPAGKQVEIS---LVNGAKNLVVSGP-PQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 99 LLTYKDFL------H---L---VTQKMADKDSKEEILKAFRL----FDEDNTGKISFANL 142
L FL H L D A + +D G +L
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDGS----DL 468
Query: 143 RSVAVELGENIADEEIQEMIN 163
R ++ + E I D I+ +
Sbjct: 469 RVLSGSISERIVDCIIRLPVK 489
Score = 34.3 bits (78), Expect = 0.021
Identities = 32/229 (13%), Positives = 66/229 (28%), Gaps = 87/229 (37%)
Query: 1 MGAHFRKSNS-SPTPIFVNNNNSIPNATAAPMKKPSGPKFELTPEQVADIQEAFA--LFD 57
HF+ + S I +NN P E+ I+E ++ +F+
Sbjct: 1649 ADNHFKDTYGFSILDIVINN--------------PVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 58 KEGTGSIST----KELKIAMRALGFEPKKEEIKK------------------MISE--IS 93
G + T KE+ + F +K + + S+ I
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 94 KDN----------------SGLLTYKDFLHLVTQKMADKDSKEEILKAFR------LFDE 131
D + +++ + + +V +R
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVV---------------FYRGMTMQVAVPR 1799
Query: 132 DNTGKISFANLRSVAV---ELGENIADEEIQEMINEADKDGDG--EI-N 174
D G+ +N +A+ + + + E +Q ++ K EI N
Sbjct: 1800 DELGR---SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Score = 31.6 bits (71), Expect = 0.15
Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 39/140 (27%)
Query: 41 LTPEQVADI--------QEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEI 92
++ E + ++ Q A D+ G + + A F +E ++ ++ +
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPR-DELGRSNYGMIAINPGRVAASFS--QEALQYVVERV 1833
Query: 93 SKDNSGLL----------TYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANL 142
K L+ Y + + D+ +L +L KI
Sbjct: 1834 GKRTGWLVEIVNYNVENQQY-----VAAGDLRALDTVTNVLNFIKL------QKIDI--- 1879
Query: 143 RSVAVELGENIADEEIQEMI 162
+EL ++++ EE++ +
Sbjct: 1880 ----IELQKSLSLEEVEGHL 1895
Score = 30.0 bits (67), Expect = 0.59
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 23/74 (31%)
Query: 17 VNNNNSIPNAT-AAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRA 75
VN N + N A +G + + + + I EL+ ++
Sbjct: 1844 VNYN--VENQQYVA-----AG--------DLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 76 LGFEPKKEEIKKMI 89
EE++ +
Sbjct: 1889 -------EEVEGHL 1895
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 36.9 bits (85), Expect = 0.001
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKEL----KIAMRALGF-EPKKEEIKKMISEISKD 95
L+ + E + FD E T I L L +P + + M ++
Sbjct: 14 LSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINM--DLPMV 71
Query: 96 NSGLLTYKDFLHLVTQKMADKDSKEEILKAF--RLFDEDNTGKISFANLRSVAVELGENI 153
+ + D L T+++ + + + LK F N KIS+ + + E +
Sbjct: 72 SGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEV 131
Query: 154 ADEEIQE 160
+ IQ
Sbjct: 132 SAMVIQR 138
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRSV-----AVELGENIADEEIQEMINEADKDGDGE 172
+ ++ F + E + K++ + L+ + LG+ + Q++++ D + D E
Sbjct: 10 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 69
Query: 173 INEEEFLHIMKK 184
++ +E+ +
Sbjct: 70 VDFQEYCVFLSC 81
Score = 27.9 bits (62), Expect = 0.89
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMA----DKDSKEEILKAFRLFDEDNTGKISF 139
+ + L + L+T+++ + + K D + ++ F
Sbjct: 23 EGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDF 72
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 34.9 bits (80), Expect = 0.003
Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRSV-----AVELGENIADEEIQEMINEADKDGDGE 172
+ ++ F + E + K++ + L+ + LG+ + Q++++ D + D E
Sbjct: 22 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 81
Query: 173 INEEEFLHIMKK 184
++ +E+ +
Sbjct: 82 VDFQEYCVFLSC 93
Score = 27.2 bits (60), Expect = 1.5
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMAD----KDSKEEILKAFRLFDEDNTGKISF 139
+ + L + L+T+++ + + K D + ++ F
Sbjct: 35 EGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDF 84
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 34.4 bits (79), Expect = 0.004
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 120 EEILKAFRLFDEDNTGKISFANLRSV-----AVELGENIADEEIQEMINEADKDGDGEIN 174
E ++ F F D G ++ +LR + L + +++ + D+ DG++
Sbjct: 9 ETMMFTFHKFAGDK-GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVG 67
Query: 175 EEEFLHIMKK 184
+ F ++
Sbjct: 68 FQSFFSLIAG 77
Score = 25.9 bits (57), Expect = 4.1
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 96 NSGLLTYKDFLHLVTQKMAD----KDSKEEILKAFRLFDEDNTGKISF 139
+ G LT +D L+ ++ + + K + D+ GK+ F
Sbjct: 21 DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGF 68
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 34.0 bits (78), Expect = 0.006
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-VAVELGENIADEE-IQEMINEADKDGDGEINE 175
++ F + E + +S L+ + EL E I +++ DK+ D EI+
Sbjct: 10 TTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDF 69
Query: 176 EEFLHIMKK 184
+E+ +
Sbjct: 70 KEYSVFLTM 78
Score = 26.3 bits (58), Expect = 3.0
Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 94 KDNSGLLTYKDFLHLVTQKMADKDSKEEIL-KAFRLFDEDNTGKISF 139
+ + L+ K+ L+ +++ + KE + + D+++ +I F
Sbjct: 23 EGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDF 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.006
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLL 100
L P + + + ++F I T L + + F+ K ++ ++++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSA--HIPTILLSL----IWFDVIKSDVMVVVNK--------- 410
Query: 101 TYKDFLHLVTQKMADKDSKEEIL 123
L + +K KE +
Sbjct: 411 -------LHKYSLVEKQPKESTI 426
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 34.1 bits (78), Expect = 0.007
Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-----VAVELGENIADEEIQEMINEADKDGDGE 172
+ ++ F + E + K++ + L+ + LG+ + Q++++ D + D E
Sbjct: 13 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNE 72
Query: 173 INEEEFLHIMKK 184
++ +E+ +
Sbjct: 73 VDFQEYCVFLSS 84
Score = 26.8 bits (59), Expect = 2.3
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMA----DKDSKEEILKAFRLFDEDNTGKISF 139
+ + L + L+T+++ + + K D + ++ F
Sbjct: 26 EGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDF 75
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 33.6 bits (77), Expect = 0.007
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-VAVELGENIADEE-IQEMINEADKDGDGEINE 175
E ++ F F E +S + V +L + D + E + D + D E+
Sbjct: 22 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKF 81
Query: 176 EEFLHIMKK 184
E+ ++ +
Sbjct: 82 NEYWRLIGE 90
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 33.4 bits (76), Expect = 0.009
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 16/75 (21%)
Query: 126 FRLFDEDNTGKISFANLRSVAVELGENI------------ADEEIQEMI----NEADKDG 169
F L D ++ G + L ++ + E + +EE M D +
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 170 DGEINEEEFLHIMKK 184
D + EEFL ++
Sbjct: 86 DRLVTLEEFLASTQR 100
Score = 25.3 bits (55), Expect = 8.3
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 48 DIQEAFALFDKEGTGSISTKELKIAMRALGFE------------PKKEEIKKMIS----E 91
+ + F L D G + +EL+ + +EE +M
Sbjct: 21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKN 80
Query: 92 ISKDNSGLLTYKDFLHLVTQK 112
+ + L+T ++FL +K
Sbjct: 81 VDTNQDRLVTLEEFLASTQRK 101
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 33.6 bits (77), Expect = 0.014
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 41 LTPEQVADIQEAFALFDKEGTGSISTKELKIAMRA----LGF-EPKKEEIKKMISEISKD 95
L+ + E + FD + T I +L A L +P K ++ M ++
Sbjct: 37 LSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQLIAM--DLPMV 94
Query: 96 NSGLLTYKDFLHLVTQKMADKDSKEEILKA 125
+ + D L T+++ + + + L+
Sbjct: 95 SGDRIHCLDILFAFTKRVLGESGEMDALRI 124
>2hxo_A Putative TETR-family transcriptional regulator; TETR
transcriptional regulator, structural genomics, PSI-2,
structure initiative; 2.40A {Streptomyces coelicolor}
Length = 237
Score = 34.1 bits (78), Expect = 0.018
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 28 AAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFE 79
A+ ++P + L+ E++ A L D G ++ RAL
Sbjct: 3 ASRSRRPERRQEPLSRERIVG--AAVELLDTVGERGLT-------FRALAER 45
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 33.7 bits (78), Expect = 0.027
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF-ANLRSVAVELGENIADEEIQEMI 162
+ + ++ S+ I + + + F NLR E ++E
Sbjct: 116 RAVCFGSLAQRNEVSRATINRFLDTMPDIDGQLKIFDINLRQDF------YTKEVLRESF 169
Query: 163 NEAD--KDGDGEINEEEFLHI 181
+ K IN+EE + I
Sbjct: 170 KRCNILK-----INDEELVTI 185
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB
family, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 1.90A {Pyrococcus horikoshii} PDB:
3ih0_A* 3gbu_A*
Length = 313
Score = 33.3 bits (77), Expect = 0.035
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISF-ANLRSVAVELGENIADEEIQEMI 162
++ + +A S+E ++K + I+F NLR E + ++E I
Sbjct: 126 KIVNFGSVILARNPSRETVMKVIKKIKGS--SLIAFDVNLRLDLWRGQEEEMIKVLEESI 183
Query: 163 NEAD--KDGDGEINEEEFLHIMKKTSLY 188
AD K +EEE L++ +
Sbjct: 184 KLADIVK-----ASEEEVLYLENQGVEV 206
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 31.8 bits (72), Expect = 0.039
Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRSV------AVELGENIADEEIQEMINEADKDGDG 171
E I+ F + + ++ + + EN ++ I+ ++ + D + D
Sbjct: 12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADK 71
Query: 172 EINEEEFLHIMKK 184
+++ EEF+ +M +
Sbjct: 72 QLSFEEFIMLMAR 84
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 31.3 bits (71), Expect = 0.052
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-VAVELGENIAD----EEIQEMINEADKDGDGE 172
E I+ F + + + +S L+ + EL I + I E+ D + D +
Sbjct: 12 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQ 71
Query: 173 INEEEFLHIMKK 184
++ +EF+ ++
Sbjct: 72 VDFQEFISLVAI 83
Score = 25.5 bits (56), Expect = 5.2
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMA----DKDSKEEILKAFRLFDEDNTGKISF 139
K + L+ + L+T+++A + K I + F+ D + ++ F
Sbjct: 25 KGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDF 74
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 31.3 bits (71), Expect = 0.058
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 120 EEILKAFRLF---DEDNTGKISFANLRS-VAVELGENIAD----EEIQEMINEADKDGDG 171
+++ F + KIS ++ R + EL ++D + ++I D + DG
Sbjct: 11 IVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDG 70
Query: 172 EINEEEFLHIMKK 184
I+ +E+ ++
Sbjct: 71 RISFDEYWTLIGG 83
Score = 25.5 bits (56), Expect = 6.4
Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 95 DNSGLLTYKDFLHLVTQK----MADKDSKEEILKAFRLFDEDNTGKISF 139
++ F ++ ++ ++D +++ K + D ++ G+ISF
Sbjct: 26 LVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISF 74
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 31.8 bits (72), Expect = 0.063
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 118 SKEEILKAFRLFDE--DNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINE 175
++ +F GKI+ AN + V+ + + + ++ AD D DG +++
Sbjct: 46 VGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSK--LPNTVLGKIWKLADVDKDGLLDD 103
Query: 176 EEFLHIMKKTSL 187
EEF +
Sbjct: 104 EEFALANHLIKV 115
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 30.9 bits (70), Expect = 0.071
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-VAVELGENIAD----EEIQEMINEADKDGDGE 172
E ++ F E + K+S L+ + EL + + + +++ E D++GDGE
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGE 68
Query: 173 INEEEFLHIMKK 184
++ +EF+ ++
Sbjct: 69 VDFQEFVVLVAA 80
Score = 25.5 bits (56), Expect = 5.1
Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 93 SKDNSGLLTYKDFLHLVTQKMA----DKDSKEEILKAFRLFDEDNTGKISF 139
+ + L+ K+ L+ +++ + + + K + DE+ G++ F
Sbjct: 21 KEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDF 71
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 30.6 bits (69), Expect = 0.086
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-VAVELGENIAD----EEIQEMINEADKDGDGE 172
E ++ F+ + N KIS + EL + + M+ + D D DG+
Sbjct: 13 ESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQ 72
Query: 173 INEEEFLHIMKK 184
++ +EFL+++
Sbjct: 73 LDFQEFLNLIGG 84
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 30.1 bits (68), Expect = 0.13
Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRSVA---VELGENIADEEIQEMINEADKDGDGEIN 174
++ F + E + +S L+ + + +G + D EI ++ + D++ D E+N
Sbjct: 10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN 69
Query: 175 EEEFLHIMKK 184
+E++ +
Sbjct: 70 FQEYVTFLGA 79
Score = 28.6 bits (64), Expect = 0.38
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 94 KDNSGLLTYKDFLHLVTQKMA--DKDSKEEILKAFRLFDEDNTGKISF 139
+ + L+ K+ L+ +++ K EI + D + +++F
Sbjct: 23 EGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNF 70
Score = 27.0 bits (60), Expect = 1.6
Identities = 10/57 (17%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 57 DKEG-TGSISTKELKIAMR---ALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLV 109
+EG ++S KELK ++ +G + + EI +++ ++ ++ + +++++ +
Sbjct: 21 GREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFL 77
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 30.2 bits (68), Expect = 0.14
Identities = 10/72 (13%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLR-----SVAVELGENIADEEIQEMINEADKDGDGE 172
++ F + E + K+S ++ + +GE + +E +++++ D++ D +
Sbjct: 11 AVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQ 70
Query: 173 INEEEFLHIMKK 184
++ +E+ +
Sbjct: 71 VDFQEYAVFLAL 82
Score = 26.3 bits (58), Expect = 3.0
Identities = 8/50 (16%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMA----DKDSKEEILKAFRLFDEDNTGKISF 139
+ + L+ + L+ +++ +K +E + K DE++ ++ F
Sbjct: 24 EGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDF 73
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 29.8 bits (67), Expect = 0.16
Identities = 9/70 (12%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRSVAVELGENIA-----DEEIQEMINEADKDGDGE 172
I+ F+ + + K+ A L+ + + + + + ++ D + D E
Sbjct: 10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69
Query: 173 INEEEFLHIM 182
++ E++ +
Sbjct: 70 VDFVEYVRSL 79
Score = 25.6 bits (56), Expect = 5.0
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMAD----KDSKEEILKAFRLFDEDNTGKISF 139
+ L + L+ +++A + + + K + D + ++ F
Sbjct: 23 CGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDF 72
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 29.4 bits (66), Expect = 0.21
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-----VAVELGENIADEEIQEMINEADKDGDGE 172
++ F + E + K+ + L+ ++ L E E + +++ D +GDGE
Sbjct: 9 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGE 68
Query: 173 INEEEFLHIMKK 184
+ +EF+ +
Sbjct: 69 CDFQEFMAFVAM 80
Score = 24.8 bits (54), Expect = 8.3
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMA----DKDSKEEILKAFRLFDEDNTGKISF 139
+ + L + L+ +++ + +E + K D + G+ F
Sbjct: 22 EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDF 71
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 29.4 bits (66), Expect = 0.24
Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-VAVELGENIAD----EEIQEMINEADKDGDGE 172
I+ F + E +T ++ L+ + EL + + + +++ + D +GD +
Sbjct: 9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQ 68
Query: 173 INEEEFLHIMKK 184
++ EF+ +
Sbjct: 69 VDFSEFIVFVAA 80
Score = 25.9 bits (57), Expect = 3.4
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 94 KDNSGLLTYKDFLHLVTQKMAD----KDSKEEILKAFRLFDEDNTGKISF 139
+ ++ LT + L+ +++ K+ + K + D + ++ F
Sbjct: 22 EGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDF 71
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 29.7 bits (66), Expect = 0.37
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 15/64 (23%)
Query: 40 ELTPEQVADIQEAFALFDKEGTGSISTKELKIAMRALGFE---------PKKEEIKKMIS 90
LT EQ A Q+ + + + T L+ + + +E P +I +
Sbjct: 67 PLTTEQQATAQKIYDDYYTQ------TSALRQQLISKRYEYNALLTASSPDTAKINAVAK 120
Query: 91 EISK 94
E+
Sbjct: 121 EMES 124
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 30.0 bits (67), Expect = 0.51
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKD 104
Q+ D ++ E + A GF+ K I + + +
Sbjct: 194 QMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK 253
Query: 105 FLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAV 147
VT ++ F D D GKISF +++
Sbjct: 254 IQKHVTFN--------QVKGIFGFTDSDCIGKISFPAIQAAPS 288
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.6 bits (64), Expect = 0.51
Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 120 EEILKAFRLF--DEDNTGKISFANLRS-----VAVELGENIADEEIQEMINEADKDGDGE 172
+ ++ F + E + K+S L+ + L +++++N+ D + D E
Sbjct: 10 DALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNE 69
Query: 173 INEEEFLHIMKK 184
++ EF+ ++
Sbjct: 70 VDFNEFVVLVAA 81
Score = 25.6 bits (56), Expect = 5.7
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 93 SKDNSGLLTYKDFLHLVTQKMA----DKDSKEEILKAFRLFDEDNTGKISF 139
S+ + L+ + L+ ++ + + K D + ++ F
Sbjct: 22 SEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDF 72
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 29.5 bits (67), Expect = 0.54
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 104 DFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMIN 163
L L + + + + + F I ++ E ++I E ++
Sbjct: 137 KLLSLASIFNSPLLDGKALTEIFTQAKARQM-IICADMIKPRLNE-----TLDDICEALS 190
Query: 164 EAD 166
D
Sbjct: 191 YVD 193
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 29.8 bits (66), Expect = 0.67
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 18/187 (9%)
Query: 8 SNSSPTPIFVNNNNSIPNATAAPMKKPSGPKFELTPEQVADIQEAFALFDKEGTGSI--- 64
+ + + + A P P +++ + + D EGT S
Sbjct: 71 CKEGIRGHTESCSCPLQQSPRADNSVPGTPTRKISASEFDRPLRPIVVKDSEGTVSFLSD 130
Query: 65 STKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQK------------ 112
S K+ ++ + F+ + + + E+ KD S L H +
Sbjct: 131 SEKKEQMPLTPPRFDHDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSL 190
Query: 113 -MADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQ--EMINEADKDG 169
+ +DS + RLFD + + + +E + I E +N D
Sbjct: 191 FLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNKGIVGHVAALGEPLNIKDAYE 250
Query: 170 DGEINEE 176
D N E
Sbjct: 251 DPRFNAE 257
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 29.5 bits (66), Expect = 0.69
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 45 QVADIQEAFALFDKEGTGSISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKD 104
Q+ D ++ E + A GF+ K I + + +
Sbjct: 147 QMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK 206
Query: 105 FLHLVTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAV 147
VT ++ F D D GKISF +++
Sbjct: 207 IQKHVTFN--------QVKGIFGFTDSDCIGKISFPAIQAAPS 241
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 27.8 bits (62), Expect = 0.79
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 158 IQEMINEADKDGDGEINEEEFLHIMKK 184
+ ++ + DK+ D +I+ EFL ++
Sbjct: 54 LADVFEKKDKNEDKKIDFSEFLSLLGD 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.3
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 81 KKEEIKKMISEI---SKDNSGLLTYK 103
+K+ +KK+ + + + D++ L K
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 28.4 bits (62), Expect = 1.4
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 126 FRLFDED-NTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFL 179
F D+ G +S L + L + D D D I +E+
Sbjct: 161 FGQLDQHPIDGYLSHTELAPLRAPLIPM--EHCTTRFFETCDLDNDKYIALDEWA 213
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 28.4 bits (64), Expect = 1.5
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 118 SKEEILKAFRLFDEDNTGKISFANL-RSVAVELGENIADEEIQEMINEADKD 168
E L + ++ ++L E + + ++E++ E D
Sbjct: 64 KGEHRYVVLTLLPKAKAAEV-LSHLSPEEQAEYLKTLPPWRLREILEELSLD 114
>3evy_A Putative type I restriction enzyme R protein; structural genomics,
unknown function, PSI-2, protein structure initiative;
1.95A {Bacteroides fragilis nctc 9343}
Length = 239
Score = 28.0 bits (62), Expect = 1.5
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 79 EPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEILKAFRLFDEDNTGKIS 138
++ + + + S + +F+ L D ++ +
Sbjct: 143 PKDRKAVLDTMDSNPELRSKIALIDNFIKLHIDGRQSNDLPADMESDLDKYIATQKAIA- 201
Query: 139 FANLRSVAVELGENIADEEIQEMINEADKDG 169
+ VA E E I + E I+E + G
Sbjct: 202 ---IEQVATE--EGIDSTLLHEYISEYEYLG 227
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 27.7 bits (61), Expect = 1.7
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 114 ADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEI 173
+K S E + +L D+D G + L E++ + + D I
Sbjct: 9 DEKLSFEAVRNIHKLMDDDANGDVDVEESDEF---LREDLNYHDPTVK-HSTFHGEDKLI 64
Query: 174 NEEEFLHIMKKTSLY 188
+ E+ K + +Y
Sbjct: 65 SVEDLWKAWKSSEVY 79
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 28.3 bits (64), Expect = 1.8
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 1 MGAHFRK-SNSSPTPIFVNNNNSIPNATAAPMKKPSGPKFELTPEQVADIQEAFA 54
+ F++ S + + V PNA P+ + + L P A +++
Sbjct: 214 ILPIFQELSQYTDKFLVV-----EPNA-GKPIVENGKTVYPLKPHDFAVHIDSYY 262
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 27.9 bits (63), Expect = 1.8
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 118 SKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEE 177
S E K + + + N R G +I E++ + EA+ G
Sbjct: 85 SNEGTNKFLEEMSKRTSMRSILTN-RWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGY 143
Query: 178 FLHIMKK 184
H+M +
Sbjct: 144 SWHLMNR 150
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 27.3 bits (60), Expect = 2.1
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 109 VTQKMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKD 168
+ D+ S E + + D+D G I + E++ ++ +
Sbjct: 4 MASTEEDRFSLEALQTIHKQMDDDKDGGIEVEESDEF---IREDMKYKDATNKHSH-LHR 59
Query: 169 GDGEINEEEFLHIMKKTSLY 188
D I E+ K + ++
Sbjct: 60 EDKHITIEDLWKRWKTSEVH 79
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase,
isomerase; 2.30A {Abies grandis}
Length = 785
Score = 27.9 bits (61), Expect = 2.4
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 149 LGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSL 187
+ E A + + ++ A ++ + E + I K+
Sbjct: 710 ISEEEALQHVYSVMENALEELNREFVNNKIPDIYKRLVF 748
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 27.3 bits (61), Expect = 2.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 112 KMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE-LGENIADEEIQEMINEADKDGD 170
++ D+ + E ++KA L DED +R A + LGE I E ++ + + + G
Sbjct: 133 EIGDERAVEPLIKA--LKDED-------GWVRQSAADALGE-IGGERVRAAMEKLAETGT 182
Query: 171 GEI 173
G
Sbjct: 183 GFA 185
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 26.6 bits (58), Expect = 3.0
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 119 KEEILKAFRLFDEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEF 178
K+ + GK++F LR G D EI+ + + D+DGD E+ E E
Sbjct: 45 KKNTVDDISESLRQGGGKLNFDELRQDLKGKG--HTDAEIEAIFTKYDQDGDQELTEHEH 102
Query: 179 LHIMKK 184
+
Sbjct: 103 QQMRDD 108
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA
BIND protein; 2.50A {Tetrahymena thermophila}
Length = 172
Score = 26.9 bits (59), Expect = 3.0
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 132 DNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKK 184
D+TG I + +L I + + K+ EE + K
Sbjct: 83 DSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSK 135
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 27.3 bits (61), Expect = 3.2
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 80 PKKEEIKKMISEISKD--NSGLLTYKDF------LHLVTQKMADKDSKEEILKAFRLFDE 131
+ E KK + + GL +F +H V + D+ + EE +A F+E
Sbjct: 400 ARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNE 459
Query: 132 DNTGKISFANLRSVAVELG 150
L + G
Sbjct: 460 ----------LLDEFEKEG 468
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 27.2 bits (61), Expect = 3.2
Identities = 4/54 (7%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 118 SKEEILKAFRLFDEDNTGKISFANL---RSVAVELGENIADEEIQEMINEADKD 168
+++ + + F + + + +M+ E D
Sbjct: 47 DEKDRQHLYNYLSPKELADM-FDVIEEDNENMKDYLAEMRPSYAADMLAEMYTD 99
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 26.9 bits (60), Expect = 3.2
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 112 KMADKDSKEEILKAFRLFDEDNTGKISFANLRSVAVE-LGENIADEEIQEMINEADKDGD 170
++ D+ + E ++KA L DED +R A + LGE I E ++ + + + G
Sbjct: 138 EIGDERAVEPLIKA--LKDED-------GWVRQSAADALGE-IGGERVRAAMEKLAETGT 187
Query: 171 GEI 173
G
Sbjct: 188 GFA 190
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase;
1.95A {Salvia fruticosa}
Length = 569
Score = 27.1 bits (59), Expect = 3.9
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 148 ELGENIADEEIQEMINEADKDGDGEINEEEFLHIMKKTSL 187
E A E ++ +I++ K + E+ F + S
Sbjct: 493 NASEEEAREHVRSLIDQTWKMMNKEMMTSSFSKYFVEVSA 532
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family,
OYE-like FMN-binding domain, TIM B oxidoreductase; HET:
PGE; 1.65A {Staphylococcus aureus}
Length = 419
Score = 26.9 bits (60), Expect = 4.0
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 6 RKSNSSPTPIFVNNNNSI-PNATAAPMKKPSGPKFELTPEQVADIQEAFA 54
R SN + +N P+ ++ E++ I + +
Sbjct: 129 RFSNQA----ILNFGKVYGPSPMTLHSPIEHVVI-AMSHEKINSIIQQYR 173
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone
cofactor, oxidoreductase-electron transport complex;
HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB:
3sle_A* 3svw_A* 3l4m_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A*
3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Length = 373
Score = 26.7 bits (59), Expect = 5.1
Identities = 5/53 (9%), Positives = 10/53 (18%), Gaps = 1/53 (1%)
Query: 1 MGAHFRKSNSSPTPIFVNNNNSIPNATAAPMKKPSGPKFELTPEQVADIQEAF 53
+ + + P L +V + AF
Sbjct: 294 YNKYTSRRPEAKINPETGAPWGEPEVARNLSLAELQSGLMLDDGRVDAL-VAF 345
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 151 ENIADEEIQEMINEADKDGDGEINEEE 177
+N+ E+IQ M+ E G I E
Sbjct: 5 DNVTQEDIQAMLQEGSS--AGVIEHNE 29
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 26.4 bits (59), Expect = 6.3
Identities = 4/30 (13%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 66 TKELKIAMRALGFEP---KKEEIKKMISEI 92
+++++ A+R + ++EE+ +++ +
Sbjct: 397 SEDIRAALRPRAGDDGLVRREEVARVVKGL 426
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 26.6 bits (59), Expect = 6.8
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 24 PNATAAPMKKPSGPKFELTPEQVADIQEAFA 54
P+ A+ + S K E+ +A +Q+ +
Sbjct: 123 PSQYASEFETLSYCK-EMDLSDIAQVQQFYV 152
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly,
membrane coat, nucleocytoplasmic transport,
beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB:
3h7n_A 3hxr_A
Length = 729
Score = 26.3 bits (57), Expect = 7.7
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 76 LGFEPKKEEIKKMISEISKDNSGL------LTYKDFLHLVTQKMADKDSKEEILKAFRLF 129
+ E E+ K + ++ S L K FL ++T ++ D + E K +F
Sbjct: 497 MHSETDGSELFKYLRTLNGFASTLSNDVLRSISKKFLDIITGELPDSMTTVE--KFTDIF 554
Query: 130 DEDNTGKISFANLRSVAVELGENIADEEIQEMINEADKDGD 170
+ NL+ + EL + ++IN K G
Sbjct: 555 KNCLENQFEITNLKILFDELNSFDIPVVLNDLINNQMKPGI 595
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 26.1 bits (58), Expect = 8.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 144 SVAVELGENIADEEIQEMINEADK 167
SVAV +GE A+ I +++ +
Sbjct: 308 SVAVPVGEETANRLIDKLVPMVES 331
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 26.0 bits (58), Expect = 8.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 66 TKELKIAMRALGFEPKKEEIKKMISEI 92
L+I +R G K + +I
Sbjct: 383 EDVLEIGVRIEGGVFTKSGLMSCFDQI 409
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 25.6 bits (57), Expect = 10.0
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 64 ISTKELKIAMRALGFEPKKEEIKKMISEISKDNSGLLTYKDFLHLVTQKMADKDSKEEIL 123
I K L I G E + + SG L ++T K ++
Sbjct: 281 IIFKALTI-YGITGRHLW-ETWYTVSRLLQ---SGKLNLDP---IITHKY---KGFDKYE 329
Query: 124 KAFRLFDEDNTGKI 137
+AF L TGK+
Sbjct: 330 EAFELMRAGKTGKV 343
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.130 0.349
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,829,118
Number of extensions: 169192
Number of successful extensions: 1999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 460
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.5 bits)