Query psy13259
Match_columns 345
No_of_seqs 150 out of 1179
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 00:10:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2362|consensus 100.0 1.7E-63 3.8E-68 458.2 16.6 288 29-343 37-332 (336)
2 PLN02724 Molybdenum cofactor s 100.0 1.7E-62 3.7E-67 523.3 26.8 274 33-342 516-804 (805)
3 COG3217 Uncharacterized Fe-S p 100.0 9.2E-59 2E-63 422.4 21.4 262 35-343 2-264 (270)
4 PF03476 MOSC_N: MOSC N-termin 100.0 2.7E-30 5.9E-35 215.3 8.5 115 34-167 1-118 (120)
5 PF03473 MOSC: MOSC domain; I 100.0 6E-29 1.3E-33 210.3 8.5 120 203-340 11-133 (133)
6 KOG2142|consensus 99.1 8E-12 1.7E-16 126.4 -0.6 207 35-289 464-671 (728)
7 PRK14499 molybdenum cofactor b 98.8 1.2E-08 2.7E-13 97.6 8.9 103 211-342 203-307 (308)
8 PRK11536 6-N-hydroxylaminopuri 98.4 1.6E-06 3.6E-11 79.4 9.8 109 210-344 54-166 (223)
9 COG2258 Uncharacterized protei 98.3 1.4E-06 3.1E-11 78.6 7.3 105 212-344 56-163 (210)
10 KOG2362|consensus 58.0 6.1 0.00013 38.0 1.7 117 32-169 53-175 (336)
11 PF07889 DUF1664: Protein of u 50.6 3.9 8.6E-05 34.3 -0.7 15 2-16 11-26 (126)
12 PF12868 DUF3824: Domain of un 39.5 15 0.00034 31.2 1.2 13 1-13 9-21 (137)
13 KOG3347|consensus 33.6 24 0.00053 30.8 1.5 28 236-263 3-40 (176)
14 PF12791 RsgI_N: Anti-sigma fa 23.1 63 0.0014 22.5 1.9 23 321-343 15-37 (56)
15 smart00318 SNc Staphylococcal 21.3 4.5E+02 0.0097 21.3 7.3 67 102-178 7-74 (138)
16 cd03703 aeIF5B_II aeIF5B_II: T 20.9 94 0.002 25.4 2.7 24 319-342 13-37 (110)
No 1
>KOG2362|consensus
Probab=100.00 E-value=1.7e-63 Score=458.24 Aligned_cols=288 Identities=33% Similarity=0.545 Sum_probs=243.9
Q ss_pred CcceeeeEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeC
Q psy13259 29 ERWTAIGRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKD 108 (345)
Q Consensus 29 ~~~~~~~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~ 108 (345)
.+|..+++|++|++||||||+|++|.+..||..|.. .+.++||.|++++. +|+|+|+|..|.|.+|+....+
T Consensus 37 ~~w~~vg~v~slhiyPiKSC~~~~v~q~~ct~~g~~-------~e~~~DR~~lvVn~-kg~~iTaRv~P~l~~ies~~~~ 108 (336)
T KOG2362|consen 37 REWVPVGRVKSLHIYPIKSCKGIDVFQYKCTPLGPS-------MEFLWDRTFLVVNE-KGKFITARVKPKLVLIESEMPD 108 (336)
T ss_pred eeeEEeeeeeeeEEEEeccccccchhHhhcCCCCcc-------hhheeeceEEEEec-cceEEEeeccceEEEeeccccc
Confidence 499999999999999999999999999999999988 77889999999998 9999999999999999999988
Q ss_pred CcEEEEEEecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCC-------CceEEEEeec
Q psy13259 109 EETVEFNIRHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTN-------RNIRLGMCCD 180 (345)
Q Consensus 109 ~~~l~l~~~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~-------~~~rLv~~~~ 180 (345)
+ .+.+.. |+.+..++++-....+. ...... .|+....++||||.++.|||+++ -..+ .++++.+.+.
T Consensus 109 ~-~~~v~~--~~~~~~s~~~~~~l~~~-~~~~~t~~~~~~~dg~~cgd~~~~~~s~~~-e~~~~~~~~~~~~~~~er~~~ 183 (336)
T KOG2362|consen 109 G-AFLVDW--PGPEKDSVLVFRVLGNK-RLKVATLFPDLSADGYDCGDWVASAFSEGI-EEPNWRLIFVGKGLYTERTNK 183 (336)
T ss_pred c-eeEEec--CCCcchhhhhhhhccCC-ccccccccccceeeccccHhhhhhhHHhhh-hccchhhhhhcCcceeeeccc
Confidence 8 788877 77666555543332221 122333 88889999999999999999883 3111 3344444311
Q ss_pred CccccccccCccccccccCCCCCcccccCCceeEEeecccHHHHhccccCCCCccccCccccEEEecCCCCCCCCccEEE
Q psy13259 181 YKRTIANSWDSYTQVYNLLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTWDWMK 260 (345)
Q Consensus 181 ~~~~~r~~~~~~~~~~~~~~~~~~~~f~D~~pi~lis~aSl~~Ln~~l~~~~~v~~~RFRpNIVI~g~~pf~Ed~W~~i~ 260 (345)
+. .. ....+.+.+.+...|+|.+||+|+|+|||++||.+| +++|++.||||||+|+||+||+||.|.+|+
T Consensus 184 ~~----~~----~~~~p~~~~~d~~~f~D~~Pfli~s~aSL~dLNt~L--~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~ 253 (336)
T KOG2362|consen 184 PD----ET----WWNNPVPKRGDSTTFSDLAPFLIASQASLDDLNTRL--DKPVPMNNFRPNIVVDGCDAFAEDKWDEIR 253 (336)
T ss_pred CC----cc----ccCCCccCccccccccccchhhhhchhhHHHHHhhh--cCCccHhhcccceEEecCccccccccceEE
Confidence 11 00 112244566778999999999999999999999999 999999999999999999999999999999
Q ss_pred ECcEEEEEEEeccccceeeeeCCCCCCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEE
Q psy13259 261 IGDAIFRVVKPCTRCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFV 340 (345)
Q Consensus 261 IG~~~~~v~~pc~RC~~~tvdp~Tg~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v 340 (345)
||+++|+.++||+||++|||||+||+++. .||+++|++|| .+ ++++|+.+++++.||+|+...++|.|+|||.|+|
T Consensus 254 Igd~~~~~v~~CtRCiltTV~petG~~~k-~qpletLr~fR-~~--~~~~~~~~~~sp~fGv~~~~~~~g~I~vGd~Vyv 329 (336)
T KOG2362|consen 254 IGDAEFQCVAPCTRCILTTVDPETGEMSK-MQPLETLREFR-LD--PGKPRKVHMGSPLFGVYAGLVNEGTIKVGDTVYV 329 (336)
T ss_pred EccEEEEEEeeccceeeeeeccccccccc-cCchhhHHhhh-cC--CcccccccCCCcccceeecccccceEEeCCEEEE
Confidence 99999999999999999999999999994 89999999995 76 5788999999999999999999999999999999
Q ss_pred eee
Q psy13259 341 ASQ 343 (345)
Q Consensus 341 ~~~ 343 (345)
+.+
T Consensus 330 ~~k 332 (336)
T KOG2362|consen 330 LYK 332 (336)
T ss_pred Eec
Confidence 754
No 2
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=1.7e-62 Score=523.33 Aligned_cols=274 Identities=24% Similarity=0.372 Sum_probs=234.3
Q ss_pred eeeEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEe--CCc
Q psy13259 33 AIGRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVK--DEE 110 (345)
Q Consensus 33 ~~~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~--~~~ 110 (345)
..++|++|||||||||+|++|++|++++.||+ +||+|||+|. +|+|+|||++|+|++|++.++ ++
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v~~a~~~~~Gl~-----------~DR~~~lvd~-~g~~~t~r~~p~l~~i~~~~~~~~~- 582 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSVERWPLSETGLL-----------YDREWMIQSL-TGEILTQKKVPEMCLITTFIDLESG- 582 (805)
T ss_pred CCCEEEEEEEeccccCCCceeeEEEEeccccc-----------ccceEEEEcC-CCcEEEcccCceEEEEEeEEecCCC-
Confidence 45789999999999999999999999999998 5999999998 999999999999999999994 56
Q ss_pred EEEEEEecCCCC-eEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCCCceEEEEeecCccccccc
Q psy13259 111 TVEFNIRHDITP-ALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCDYKRTIANS 188 (345)
Q Consensus 111 ~l~l~~~~p~~~-~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~~~~rLv~~~~~~~~~r~~ 188 (345)
.|+|++ |+++ ++.|++++.... ....++ +|++.+.++|||+++++|||++ || .+++|+++ ++... |..
T Consensus 583 ~l~l~~--~~~~~~l~v~l~~~~~~--~~~~~v~v~~~~~~~~~~g~~~~~w~S~~-lg---~~~~Lv~~-~~~~~-r~~ 652 (805)
T PLN02724 583 KLVVRA--PRCDHKLEIPLESDSQH--EESGEVILCGNRAESMSYGTEINEWFTNA-LG---RRCTLVRK-SSSNT-RVC 652 (805)
T ss_pred eEEEEc--CCCCccEEEeCCCcccc--cccceeEEeCCcceeEecchhHHHHHHHH-hC---CceEEEEe-CCccc-ccc
Confidence 899999 9987 799999875432 135677 9999999999999999999999 99 78999998 65432 221
Q ss_pred cCccccccccC--CCCCcccccCCceeEEeecccHHHHhccccC-----CCCccccCccccEEEecCCCCCCCCccEEEE
Q psy13259 189 WDSYTQVYNLL--SDEDTGRFSDITSYMIVNEESVNDLNTRVTC-----GEKFTSYHFRPNIVVKNCIPYEEDTWDWMKI 261 (345)
Q Consensus 189 ~~~~~~~~~~~--~~~~~~~f~D~~pi~lis~aSl~~Ln~~l~~-----~~~v~~~RFRpNIVI~g~~pf~Ed~W~~i~I 261 (345)
..... .... ......+|+|.+||||+|++||++||++++. +.+++++||||||||+|++||+||.|++|+|
T Consensus 653 ~~~~~--~~~~~~~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~I 730 (805)
T PLN02724 653 RNRNP--SHSPCGDDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSI 730 (805)
T ss_pred ccccc--ccccccCcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEEE
Confidence 11000 0011 1223589999999999999999999999953 2479999999999999999999999999999
Q ss_pred CcEEEEEEEeccccceeeeeCCCCCCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEE----cCCCEEeeCCe
Q psy13259 262 GDAIFRVVKPCTRCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGL----YHPGCIRTNDI 337 (345)
Q Consensus 262 G~~~~~v~~pc~RC~~~tvdp~Tg~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v----~~~G~I~VGD~ 337 (345)
|++.|++++||.||+||||||+||+++++.|||+||++|||.. +++.||+|++. ...|.|+|||.
T Consensus 731 G~~~~~~~~~C~RC~~~tvDp~tg~~~~~~epl~tL~~~R~~~-----------~~~~FG~~~~~~~~~~~~~~i~vGd~ 799 (805)
T PLN02724 731 GDAEFTVLGGCNRCQMINIDQETGLVNPSNEPLATLASYRRVK-----------GKILFGILLRYEISDKRDQWIAVGSR 799 (805)
T ss_pred CCEEEEEecccCCCCCCcCCcccCccCCCCChHHHHHHHhCcC-----------CCCCccceeeccccCCCCcEEEeCCE
Confidence 9999999999999999999999999876679999999998652 56899999976 56789999999
Q ss_pred EEEee
Q psy13259 338 VFVAS 342 (345)
Q Consensus 338 V~v~~ 342 (345)
|++..
T Consensus 800 v~~~~ 804 (805)
T PLN02724 800 VNPRI 804 (805)
T ss_pred EEecc
Confidence 98753
No 3
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=9.2e-59 Score=422.38 Aligned_cols=262 Identities=29% Similarity=0.432 Sum_probs=233.3
Q ss_pred eEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeCCcEEEE
Q psy13259 35 GRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKDEETVEF 114 (345)
Q Consensus 35 ~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~l~l 114 (345)
.+|++||||||||++|+.++++.+...||. +||+|||+|. +|.|+|+|++|+|..+++.+..+ .+.+
T Consensus 2 ~~ls~L~iyPvKSl~g~~l~~a~v~~~Gl~-----------~DR~fml~d~-dG~~itar~~pa~~~~~~~~~~~-~~~l 68 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERLSRALVDASGLA-----------GDRRFMLVDP-DGRFITARRRPAMVRFTPAYEHD-GLRL 68 (270)
T ss_pred ccchheeeeccccccchhhhhheeeccCCc-----------cceEEEEEcC-CCceeccccccceeEeeeecccc-ceEE
Confidence 469999999999999999999999999987 6999999998 79999999999999999977666 6999
Q ss_pred EEecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCCCceEEEEeecCccccccccCccc
Q psy13259 115 NIRHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCDYKRTIANSWDSYT 193 (345)
Q Consensus 115 ~~~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~~~~rLv~~~~~~~~~r~~~~~~~ 193 (345)
+. ++++.+.+...+. +...+ +|++.+.+..-++++++|||.| || ..+.|+.. +... .+...
T Consensus 69 ~~--~~~~~~~v~~~~~------~~~~~~vw~~~~~a~~~~~a~~d~lS~f-lg---~~v~L~~~-~~~~-~r~v~---- 130 (270)
T COG3217 69 TA--PDGEELYVRFADA------QRAPVEVWGDHFTADAAGDAANDWLSGF-LG---RAVSLRWD-GAGF-ARRVK---- 130 (270)
T ss_pred ec--CCCccceeecccc------ccccceeeccccccccchhHHHHHHHhh-hc---eeeEEEec-Cccc-ccccc----
Confidence 98 9999999887652 46677 9999999999999999999999 99 89999988 5432 22211
Q ss_pred cccccCCCCCcccccCCceeEEeecccHHHHhccccCCCCccccCccccEEEecCCCCCCCCccEEEECcEEEEEEEecc
Q psy13259 194 QVYNLLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTWDWMKIGDAIFRVVKPCT 273 (345)
Q Consensus 194 ~~~~~~~~~~~~~f~D~~pi~lis~aSl~~Ln~~l~~~~~v~~~RFRpNIVI~g~~pf~Ed~W~~i~IG~~~~~v~~pc~ 273 (345)
..+.....|+|.+|+|+++++||++|+++. +..++|+|||||||++|.++|.||.|+.|+||++.|.+++||.
T Consensus 131 -----~~p~~~~~fadg~p~l~~~~aSl~dL~~r~--~~~~~merFRpNlvv~ge~a~aEd~w~~i~IG~v~F~~vkPC~ 203 (270)
T COG3217 131 -----AGPAVPVTFADGYPILLFNTASLADLRRRV--PANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCS 203 (270)
T ss_pred -----CCCceeeEecCCceEEEEccccHHHHhhhc--cCCCChhhCCCceEEeecccccccCceEEEEccEEEEEeccch
Confidence 112346899999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred ccceeeeeCCCCCCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEEeee
Q psy13259 274 RCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFVASQ 343 (345)
Q Consensus 274 RC~~~tvdp~Tg~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v~~~ 343 (345)
||++||+||+||++.+..+|+.+|+++|-.. + .....||+|+.+..+|.|++||.|++++.
T Consensus 204 RCi~Ttvd~~tGe~~p~~~p~~~~~~~R~~~-----d----~~~~~FG~n~~a~~~g~ir~Gd~ve~l~~ 264 (270)
T COG3217 204 RCIFTTVDPDTGERRPGGEPLFTLNRFRTNP-----D----AGGVLFGQNLIARNEGRIRVGDAVEVLAV 264 (270)
T ss_pred hcceeeECCcccccCCCCChhHHHHhhhccc-----c----cCcccccceEEeccCcceecCcceeEEEe
Confidence 9999999999999988999999999996221 0 23579999999999999999999999875
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=99.96 E-value=2.7e-30 Score=215.29 Aligned_cols=115 Identities=38% Similarity=0.665 Sum_probs=62.4
Q ss_pred eeEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEe--CCcE
Q psy13259 34 IGRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVK--DEET 111 (345)
Q Consensus 34 ~~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~--~~~~ 111 (345)
+++|++||+||||||+|++++++++++.|+. ++||+|||+|. +|+|+|+|++|+|++|++.++ ++ .
T Consensus 1 m~~v~~L~iyPIKS~~g~~~~~~~~~~~Gl~----------~~DR~~~l~d~-~g~~it~r~~P~l~~i~~~~~~~~~-~ 68 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEVDEAEVTPSGLK----------AGDRRFMLVDE-DGRFITQRQYPRLALIRPEIDEDDG-T 68 (120)
T ss_dssp -----------------------------------------GT--SEEEEET-TS-EE-TTT-GGGG--EEEE---SS-E
T ss_pred CccccccccccccccccccccccccccccCC----------ccchhheeECC-CCCEEeeccCcceeeEEEEeeccee-E
Confidence 4799999999999999999999999999982 26999999996 999999999999999999994 56 9
Q ss_pred EEEEEecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcC
Q psy13259 112 VEFNIRHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLN 167 (345)
Q Consensus 112 l~l~~~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg 167 (345)
|+|++ |+++.+.+++..... ....+ +|++.+.++|||+++++|||++ ||
T Consensus 69 l~l~~--~~~~~l~i~~~~~~~----~~~~v~v~~~~~~~~~~gd~~~~WfS~~-Lg 118 (120)
T PF03476_consen 69 LTLSA--PGMPPLEIPLPDSTG----PRTEVQVWGDTVEAYDCGDEASEWFSEF-LG 118 (120)
T ss_dssp EEEE---SSS-EEEEESSSS-S-----EEEEEETTEEEEEEE--HHHHHHHHHH-T-
T ss_pred EEEEC--CCCceEEEEcccccC----CEeeEEEECCEeEEEECCHHHHHHHHHH-HC
Confidence 99999 999999999873221 56778 9999999999999999999999 99
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.95 E-value=6e-29 Score=210.31 Aligned_cols=120 Identities=37% Similarity=0.682 Sum_probs=90.9
Q ss_pred CcccccCCceeEEeecccHHHHhccccCCCC-ccccCccccEEEecCCCCCCCCc--cEEEECcEEEEEEEeccccceee
Q psy13259 203 DTGRFSDITSYMIVNEESVNDLNTRVTCGEK-FTSYHFRPNIVVKNCIPYEEDTW--DWMKIGDAIFRVVKPCTRCIAIT 279 (345)
Q Consensus 203 ~~~~f~D~~pi~lis~aSl~~Ln~~l~~~~~-v~~~RFRpNIVI~g~~pf~Ed~W--~~i~IG~~~~~v~~pc~RC~~~t 279 (345)
....|+|.+|+||+|++|+++|++++ +.+ +++.||||||+|+|.+||+||.| ++++||++.|+++++|.||.+++
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~--~~~~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG~~~l~v~~~~~rC~~~~ 88 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARL--GEPGLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIGDAVLEVTQPCPRCVMPN 88 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHC--CCCGGSCCCCT-SEEECS-T---TCCGBTEEEECTTEEEEEEEE----CHHH
T ss_pred CcccCCCCCceeeccHHHHHHHHhhh--ccccCCHhHCCCCEEEeccccccccccceeeeccCCEEEEEEeCcCCCCccc
Confidence 35789999999999999999999999 655 49999999999999999999999 99999999999999999999999
Q ss_pred eeCCCCCCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEE
Q psy13259 280 FNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFV 340 (345)
Q Consensus 280 vdp~Tg~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v 340 (345)
+||+||.+++ +....+..+- ....+|+|+.+..+|.|+|||+|+|
T Consensus 89 ~~~~tg~~~~--~~~~~~~~~~--------------~~~~~G~~~~V~~~G~I~vGD~V~V 133 (133)
T PF03473_consen 89 VDPDTGERDP--EGKPLFGQNA--------------SPGRRGVYARVIKGGTIRVGDEVEV 133 (133)
T ss_dssp HHHCHCTCTS--TTHHHHHHHH--------------CCTSS-EEEEEEE-EEEETTSEEEE
T ss_pred eeeccCcccc--hhhhhhhhhe--------------ecCCceEEEEeccCCEEccCCeEEC
Confidence 9999999986 3222333321 1236899999999999999999987
No 6
>KOG2142|consensus
Probab=99.12 E-value=8e-12 Score=126.44 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=128.5
Q ss_pred eEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeCCcEEEE
Q psy13259 35 GRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKDEETVEF 114 (345)
Q Consensus 35 ~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~l~l 114 (345)
..+.++..|||| |+.++++++.+...|+. +||.||++|. +|..++++++++|++|.+.++-.
T Consensus 464 ~~d~~~~s~~~~-~~~~EI~~~~~~~~gl~-----------~~~s~m~~~~-~~~alr~etE~e~~Li~~~~~~~----- 525 (728)
T KOG2142|consen 464 HFDAAVASYPIK-CAAFEIEEENSGSQGLK-----------YDRSWMSVDM-NGSALRQETESELCLIGPRIKVQ----- 525 (728)
T ss_pred hhhhhhhhhhhh-hceeEeeccCccccccc-----------cccccccccc-cccceeeecccceeeeccccchh-----
Confidence 356779999999 99999999998888887 5999999998 99999999999999999987421
Q ss_pred EEecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCCCceEEEEeecCccccccccCccc
Q psy13259 115 NIRHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCDYKRTIANSWDSYT 193 (345)
Q Consensus 115 ~~~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~~~~rLv~~~~~~~~~r~~~~~~~ 193 (345)
.. -+++ .++++...-+........+ .| .+++++|+++....|++.- .|+ ..+..+.. . .+.....
T Consensus 526 ~d--~~~~-~~vs~~~sl~~~~a~~~s~~d~-~~c~~iDh~~~lgln~t~~-r~r--~ll~wl~~-s----l~~~~~~-- 591 (728)
T KOG2142|consen 526 ED--EQSE-RRVSFPTSLEQGEASKCSSYDC-PPCRGIDHVDSLGLNLTTN-RGR--ELLNWLVQ-S----LRNLQHS-- 591 (728)
T ss_pred hh--cccc-eeecchhhhhhhhhhhcccccC-ccccccchhhhhhHHhhhh-hhh--hHHHHHHH-h----ccccccc--
Confidence 11 1222 3333321111100012222 33 4588999999999999987 552 11211111 0 0000000
Q ss_pred cccccCCCCCcccccCCceeEEeecccHHHHhccccCCCCccccCccccEEEecCCCCCCCCccEEEECcEEEEEEEecc
Q psy13259 194 QVYNLLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTWDWMKIGDAIFRVVKPCT 273 (345)
Q Consensus 194 ~~~~~~~~~~~~~f~D~~pi~lis~aSl~~Ln~~l~~~~~v~~~RFRpNIVI~g~~pf~Ed~W~~i~IG~~~~~v~~pc~ 273 (345)
.......+...+...+....+-..... .-.--..|||.||||++..+|+|-.|+.+-||...|.+ ||.
T Consensus 592 --------~~~~~~~nlvq~ygpk~~~erG~~~~f--nl~d~~~~fr~p~IV~~lae~E~isl~~~~l~~iri~d--p~~ 659 (728)
T KOG2142|consen 592 --------ESSSTTVNLVQIYGPKTKYERGPAVAF--NLFDLSKRFRAPIIVNKLAEREEISLGELSLGHIRIQD--PCH 659 (728)
T ss_pred --------ccccccccceeeecCccccccChhhee--ehhhhhccccchhhhcchhhhhcccccceeeeeeEEec--Ccc
Confidence 000000011111111111111000000 11123568999999999999999999999999999988 899
Q ss_pred ccceeeeeCCCCCCCC
Q psy13259 274 RCIAITFNPETAVKNP 289 (345)
Q Consensus 274 RC~~~tvdp~Tg~~~~ 289 (345)
| ++||.+|++.+
T Consensus 660 r----~~dq~~~~r~~ 671 (728)
T KOG2142|consen 660 R----DIDQLLGQRRG 671 (728)
T ss_pred h----hhhHHhhhhcc
Confidence 9 67899998864
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=98.83 E-value=1.2e-08 Score=97.63 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=77.1
Q ss_pred ceeEEeecccHHHHhccccCCCC-ccccCccccEEEecCCCCCCCCccEEEECc-EEEEEEEeccccceeeeeCCCCCCC
Q psy13259 211 TSYMIVNEESVNDLNTRVTCGEK-FTSYHFRPNIVVKNCIPYEEDTWDWMKIGD-AIFRVVKPCTRCIAITFNPETAVKN 288 (345)
Q Consensus 211 ~pi~lis~aSl~~Ln~~l~~~~~-v~~~RFRpNIVI~g~~pf~Ed~W~~i~IG~-~~~~v~~pc~RC~~~tvdp~Tg~~~ 288 (345)
.++++++.++++.++ .+ +.. +++..||.||+++|.....-.-=+.++||+ +.|+++.||..|............+
T Consensus 203 RqVsl~~~E~~~~~~-~~--g~~~l~pG~fGENLtv~Gidl~~l~iGdrlrIG~~avLeVt~pr~PC~~~~~~l~~~~~~ 279 (308)
T PRK14499 203 RQVSLLDISSIKKME-EY--GLKGLCFGKFAENITTENLDLQKISLGTKLKIGDNVVLEISQIGKKCHGSGCEIARQVGV 279 (308)
T ss_pred ceEEEcCHHHHHHHH-hc--CCcCCCcccccceEEEcCcCHHHCCCCCEEEECCcEEEEEEeCCCCCcCcccchhHhcCc
Confidence 589999999999987 34 544 999999999999998432222238999999 9999999999997532111111111
Q ss_pred CCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEEee
Q psy13259 289 PALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFVAS 342 (345)
Q Consensus 289 ~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v~~ 342 (345)
+ ..+.-|+||.|.++|.|++||.|.+.+
T Consensus 280 ~--------------------------~~~r~G~y~RVl~~G~Ir~GD~V~l~~ 307 (308)
T PRK14499 280 C--------------------------IMPKEGLFAKVLKGGKIKPGDIIEILN 307 (308)
T ss_pred c--------------------------CcccceEEEEEecCeEEcCCCEEEEcc
Confidence 0 012259999999999999999999875
No 8
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=98.40 E-value=1.6e-06 Score=79.42 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=83.2
Q ss_pred CceeEEeecccHHHHhccccC-CCCccccCccccEEEecCCCCCCCCc---cEEEECcEEEEEEEeccccceeeeeCCCC
Q psy13259 210 ITSYMIVNEESVNDLNTRVTC-GEKFTSYHFRPNIVVKNCIPYEEDTW---DWMKIGDAIFRVVKPCTRCIAITFNPETA 285 (345)
Q Consensus 210 ~~pi~lis~aSl~~Ln~~l~~-~~~v~~~RFRpNIVI~g~~pf~Ed~W---~~i~IG~~~~~v~~pc~RC~~~tvdp~Tg 285 (345)
.-.+++.+.++.+..++.++. +..+..--|=-||.++|. .|++- +.++||++.++|+.|+..|-- ++...+
T Consensus 54 dkAV~~y~~e~y~~w~~~~~~~~~~l~~G~fGENLtv~Gl---~e~~v~IGD~~riG~avleVsqpR~PC~k--l~~r~~ 128 (223)
T PRK11536 54 DRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGL---TESNVFIGDIFRWGEALIQVTQPRSPCYK--LNYHFD 128 (223)
T ss_pred cceEEEcCHhHHHHHHHHccccccccCCCCccCCEEecCc---ChhhCCccCEEEECCEEEEEecCCCCCCc--hhhhcc
Confidence 357999999999999888731 235667789999999985 56655 899999999999999999944 333444
Q ss_pred CCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEEeeec
Q psy13259 286 VKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFVASQQ 344 (345)
Q Consensus 286 ~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v~~~~ 344 (345)
.. +..+.+.+. ..-|+|+.|.++|.|++||+|.+++|.
T Consensus 129 ~~----~~~~~~~~~-----------------g~~G~Y~RVL~~G~V~~GD~v~l~~r~ 166 (223)
T PRK11536 129 IS----DIAQLMQNS-----------------GKCGWLYRVIAPGKVSADAPLELVSRV 166 (223)
T ss_pred ch----hHHHHHHhh-----------------CCcEEEEEEECCcEEcCCCEEEEEeCC
Confidence 32 222333222 245999999999999999999999873
No 9
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=1.4e-06 Score=78.58 Aligned_cols=105 Identities=18% Similarity=0.323 Sum_probs=82.5
Q ss_pred eeEEeecccHHHHhccccCCCCccccCccccEEEecCCCCCCCCc---cEEEECcEEEEEEEeccccceeeeeCCCCCCC
Q psy13259 212 SYMIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTW---DWMKIGDAIFRVVKPCTRCIAITFNPETAVKN 288 (345)
Q Consensus 212 pi~lis~aSl~~Ln~~l~~~~~v~~~RFRpNIVI~g~~pf~Ed~W---~~i~IG~~~~~v~~pc~RC~~~tvdp~Tg~~~ 288 (345)
.+.+.+...++.+.+.+ +..+.+--|+-||.++|. .|.+. ++++||++.|+|+.|+.-|.-.+.-. +..
T Consensus 56 Av~~y~~ehy~~w~~~l--g~~l~pg~fGENltt~Gl---~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~--~~~- 127 (210)
T COG2258 56 AVCHYPREHYAAWETLL--GRGLQPGAFGENLTTSGL---DEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRF--GIP- 127 (210)
T ss_pred eEEEccHHHHHHHHHHh--CCCCCcccccCceeecCc---chhhccccCEEEeccEEEEecCCCCchHHHHHhc--CCc-
Confidence 78899999999999999 777999999999999997 45555 89999999999999999998665432 211
Q ss_pred CCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEEeeec
Q psy13259 289 PALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFVASQQ 344 (345)
Q Consensus 289 ~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v~~~~ 344 (345)
+..+.+. ....-|+|+.|..+|.|++||++.+.+|-
T Consensus 128 ---~~~~~~~-----------------~~G~~G~y~RVL~~G~v~~gD~l~l~~r~ 163 (210)
T COG2258 128 ---DLAKRFQ-----------------QTGRTGWYARVLEEGKVRAGDPLKLIPRP 163 (210)
T ss_pred ---cHHHHhh-----------------ccCcccEEEEEcccceecCCCceEEecCC
Confidence 1111111 12245999999999999999999998763
No 10
>KOG2362|consensus
Probab=57.97 E-value=6.1 Score=37.95 Aligned_cols=117 Identities=10% Similarity=-0.054 Sum_probs=77.5
Q ss_pred eeeeEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeCCc-
Q psy13259 32 TAIGRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKDEE- 110 (345)
Q Consensus 32 ~~~~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~- 110 (345)
++..+..++| +++-+.-..++++...+.-. + ..-+-|++... .+..+++.+.+....+.-..-.|.
T Consensus 53 iKSC~~~~v~----q~~ct~~g~~~e~~~DR~~l-------v-Vn~kg~~iTaR-v~P~l~~ies~~~~~~~~v~~~~~~ 119 (336)
T KOG2362|consen 53 IKSCKGIDVF----QYKCTPLGPSMEFLWDRTFL-------V-VNEKGKFITAR-VKPKLVLIESEMPDGAFLVDWPGPE 119 (336)
T ss_pred eccccccchh----HhhcCCCCcchhheeeceEE-------E-EeccceEEEee-ccceEEEeecccccceeEEecCCCc
Confidence 4567777888 77777777777777666541 1 12377888876 899999999988877666554430
Q ss_pred ---EEEEEEecCCCCeEEEeccccchhcccceeee--EEccceeeeccchHHHHHHHhhhcCCC
Q psy13259 111 ---TVEFNIRHDITPALVINVNKVRSKAQLKSFKM--HFNEVVKAFDCGDEASDWFSMFLLNKT 169 (345)
Q Consensus 111 ---~l~l~~~~p~~~~l~v~l~~~~~~~~~~~~~~--~~~~~~~~~d~gd~~~~wls~~lLg~~ 169 (345)
.+.+.. ++++.+.+++.... ...+. +|...-.+.+.+.+..+|+..+ .++.
T Consensus 120 ~~s~~~~~~--l~~~~~~~~t~~~~-----~~~dg~~cgd~~~~~~s~~~e~~~~~~~~-~~~~ 175 (336)
T KOG2362|consen 120 KDSVLVFRV--LGNKRLKVATLFPD-----LSADGYDCGDWVASAFSEGIEEPNWRLIF-VGKG 175 (336)
T ss_pred chhhhhhhh--ccCCcccccccccc-----ceeeccccHhhhhhhHHhhhhccchhhhh-hcCc
Confidence 344445 67776666554432 22333 5555667888889999999988 6643
No 11
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.56 E-value=3.9 Score=34.30 Aligned_cols=15 Identities=40% Similarity=0.919 Sum_probs=10.7
Q ss_pred ccchhhHHHHHH-HHh
Q psy13259 2 ASAGALVVGYLY-WYR 16 (345)
Q Consensus 2 ~~~~~~~~~~~~-~~~ 16 (345)
+|+.+.|+||+| |||
T Consensus 11 paa~~gavGY~Y~wwK 26 (126)
T PF07889_consen 11 PAAAIGAVGYGYMWWK 26 (126)
T ss_pred HHHHHHHHHheeeeec
Confidence 456666778888 776
No 12
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=39.55 E-value=15 Score=31.22 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=9.2
Q ss_pred CccchhhHHHHHH
Q psy13259 1 MASAGALVVGYLY 13 (345)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (345)
+|+|||+|+|+|+
T Consensus 9 la~~aLaAAG~G~ 21 (137)
T PF12868_consen 9 LAEAALAAAGAGY 21 (137)
T ss_pred HhHHHHHHHHHHH
Confidence 3677877777764
No 13
>KOG3347|consensus
Probab=33.57 E-value=24 Score=30.82 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=19.3
Q ss_pred ccCccccEEEecCCC-----CC-----CCCccEEEECc
Q psy13259 236 SYHFRPNIVVKNCIP-----YE-----EDTWDWMKIGD 263 (345)
Q Consensus 236 ~~RFRpNIVI~g~~p-----f~-----Ed~W~~i~IG~ 263 (345)
++|-||||+|.|.+. +. .-..+.|-||+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 458999999998632 22 22447888885
No 14
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=23.09 E-value=63 Score=22.54 Aligned_cols=23 Identities=4% Similarity=0.107 Sum_probs=17.2
Q ss_pred eeEEEEcCCCEEeeCCeEEEeee
Q psy13259 321 GVYAGLYHPGCIRTNDIVFVASQ 343 (345)
Q Consensus 321 Gvy~~v~~~G~I~VGD~V~v~~~ 343 (345)
|-+..+...+...|||+|.+.++
T Consensus 15 GeF~~ik~~~~~~vG~eI~~~~~ 37 (56)
T PF12791_consen 15 GEFIKIKRKPGMEVGQEIEFDEK 37 (56)
T ss_pred CcEEEEeCCCCCcccCEEEEech
Confidence 55666665555999999998764
No 15
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=21.32 E-value=4.5e+02 Score=21.32 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=36.0
Q ss_pred EEEEEeCCcEEEEEEecCCCCeEEEeccccchhcccceeeeEEcc-ceeeeccchHHHHHHHhhhcCCCCCceEEEEe
Q psy13259 102 VEMSVKDEETVEFNIRHDITPALVINVNKVRSKAQLKSFKMHFNE-VVKAFDCGDEASDWFSMFLLNKTNRNIRLGMC 178 (345)
Q Consensus 102 i~~~~~~~~~l~l~~~~p~~~~l~v~l~~~~~~~~~~~~~~~~~~-~~~~~d~gd~~~~wls~~lLg~~~~~~rLv~~ 178 (345)
+...+|.+ ++.+.. ++.....|.|...... ...-.+.. ......||.++.+||.+.|+| +++.+...
T Consensus 7 V~~V~DGD-T~~v~~--~~~~~~~vrL~gIdaP----e~~~~~~~~~~~~~~~g~~A~~~l~~~l~g---~~V~~~~~ 74 (138)
T smart00318 7 VERVLDGD-TIRVRL--PKNKLITIRLSGIDAP----ETARPNKGDGTTDEPFGEEAKEFLKKLLLG---KKVQVEVD 74 (138)
T ss_pred EEEEecCC-EEEEEe--CCCCEEEEEEEeccCC----ccCCCCCCCccccCcHHHHHHHHHHHHhCC---CEEEEEEe
Confidence 33344555 788877 6655555554332210 00000000 011356799999999999666 66776543
No 16
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=20.91 E-value=94 Score=25.43 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.1
Q ss_pred eeeeEEEE-cCCCEEeeCCeEEEee
Q psy13259 319 VMGVYAGL-YHPGCIRTNDIVFVAS 342 (345)
Q Consensus 319 ~fGvy~~v-~~~G~I~VGD~V~v~~ 342 (345)
-+|..+.+ ...|++++||.|.+-.
T Consensus 13 G~G~t~dvIl~~GtL~~GD~Iv~g~ 37 (110)
T cd03703 13 GLGTTIDVILYDGTLREGDTIVVCG 37 (110)
T ss_pred CCceEEEEEEECCeEecCCEEEEcc
Confidence 36888765 4899999999997743
Done!