Query psy13259
Match_columns 345
No_of_seqs 150 out of 1179
Neff 7.1
Searched_HMMs 29240
Date Sat Aug 17 00:10:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 2.1E-30 7.1E-35 219.3 9.6 119 37-182 1-120 (136)
2 1oru_A YUAD protein; structura 99.7 2.4E-17 8.3E-22 147.2 8.9 115 209-343 65-184 (195)
3 1o65_A Hypothetical protein YI 99.4 1.1E-12 3.9E-17 120.5 9.8 106 211-343 67-177 (246)
4 1oru_A YUAD protein; structura 91.5 0.16 5.5E-06 44.4 4.3 37 34-81 9-45 (195)
5 2ks1_B Epidermal growth factor 22.7 53 0.0018 21.4 2.3 6 14-19 33-38 (44)
6 3cxb_A Protein SIFA; SIFA, SKI 22.4 2.1E+02 0.0071 26.5 7.0 78 42-133 97-183 (336)
7 2lbg_A Major prion protein; co 17.7 37 0.0013 19.7 0.6 11 2-12 7-17 (27)
8 1yua_A Topoisomerase I; gene-r 15.7 1.8E+02 0.0061 22.9 4.2 37 50-101 12-48 (122)
9 1qd7_I S17 ribosomal protein; 13.5 1E+02 0.0034 23.2 2.3 20 323-342 41-60 (89)
10 3heq_A Major prion protein; ce 12.5 35 0.0012 27.5 -0.6 12 1-12 26-37 (142)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=99.96 E-value=2.1e-30 Score=219.29 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=106.3
Q ss_pred EeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeCCcEEEEEE
Q psy13259 37 VSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKDEETVEFNI 116 (345)
Q Consensus 37 V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~l~l~~ 116 (345)
|++|||||||||+|++++++. . +||+|||+|. +|+|+|||++|+|++|++.++++ .|+|++
T Consensus 1 v~~L~iYPIKSc~g~~l~~a~------~-----------~DR~wmlvd~-~G~~lt~r~~P~Lali~~~~~~~-~L~l~~ 61 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQSEAA------A-----------YQKRWLVAND-AGQWLNRDLCPRLAEVSVELRMG-YLVLKA 61 (136)
T ss_dssp CCCCCEEEETTTEEECCGGGG------G-----------TCCSEEEEET-TSCEECTTTCGGGGCCEEEECSS-EEEEEC
T ss_pred CceEEEeccccCCceecCccC------c-----------cCCcEEEEeC-CCCEEEccCCccccEEEEEecCC-EEEEEe
Confidence 578999999999999999986 4 4999999998 99999999999999999999988 899999
Q ss_pred ecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCCCceEEEEeecCc
Q psy13259 117 RHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCDYK 182 (345)
Q Consensus 117 ~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~~~~rLv~~~~~~ 182 (345)
||++++.+++++.... ......+ +|++.+.++|||+++++|||+| || .++||+++ ++.
T Consensus 62 --pg~~~l~vpl~~~~~~-~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~-Lg---~p~rLv~~-~~~ 120 (136)
T 2exn_A 62 --PGMLRLDIPLDVIEDD-DSVRYQMLVGEQTVDVVDEGELAAAWISNH-AG---VPCRILKV-HPD 120 (136)
T ss_dssp --SSSCEEEEESSCCCSS-CSCEEEEEETTEEEEEEECCHHHHHHHHHH-TC---SSEEEEEE-CTT
T ss_pred --CCCceEEEECCCcccc-ccCceeEEEeCCcceeEeccHHHHHHHHHH-hC---CCeEEEEc-CCC
Confidence 9999999999765411 0135678 9999999999999999999999 99 78999999 664
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.70 E-value=2.4e-17 Score=147.18 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=93.5
Q ss_pred CCceeEEeecccHHHHhccccCCCC-ccccCccccEEEecC-CCCCCCCccEEEECc-EEEEEEEecccccee--eeeCC
Q psy13259 209 DITSYMIVNEESVNDLNTRVTCGEK-FTSYHFRPNIVVKNC-IPYEEDTWDWMKIGD-AIFRVVKPCTRCIAI--TFNPE 283 (345)
Q Consensus 209 D~~pi~lis~aSl~~Ln~~l~~~~~-v~~~RFRpNIVI~g~-~pf~Ed~W~~i~IG~-~~~~v~~pc~RC~~~--tvdp~ 283 (345)
+..++++++.+|++++++.+ +.+ +++.+||+||+|+|. ..++++-++.|+||+ +.|+|+.+|.||..+ ++|+.
T Consensus 65 ~~r~V~l~~~e~~~~~~~~~--g~~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG~~a~leVt~~~~pC~~~~~~i~~~ 142 (195)
T 1oru_A 65 NRRQISIVSIEECNEIALKM--GVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQSY 142 (195)
T ss_dssp CCCCEEEEEHHHHHHHHHHH--TCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHHHHHHHH
T ss_pred CCceEEECCHHHHHHHHHHc--CCCCCCcccccCCEEEeCCCChhhCCCCCEEEECCCEEEEEeeccCCCCCCccccchh
Confidence 34679999999999999998 665 999999999999998 666666689999997 999999999999985 56665
Q ss_pred CCCCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEEeee
Q psy13259 284 TAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFVASQ 343 (345)
Q Consensus 284 Tg~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v~~~ 343 (345)
++... ...+.+... ....+|+|+.|.++|.|++||.|.+.++
T Consensus 143 ~~~~~---g~~~~~~~~---------------~~~r~G~~~rVl~~G~I~~GD~v~l~~~ 184 (195)
T 1oru_A 143 YPDQP---KLASAFVRH---------------ALGIRGIVCIVERPGAVYTGDEIEVHSY 184 (195)
T ss_dssp STTST---THHHHHHHH---------------STTSSCEEEEEEECEEEETTCEEEEEEE
T ss_pred ccccc---chHHHHHhh---------------ccCCccEEEEEecCceEcCCCEEEEEeC
Confidence 53221 444555442 1246899999999999999999999876
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=99.38 E-value=1.1e-12 Score=120.50 Aligned_cols=106 Identities=15% Similarity=0.285 Sum_probs=87.6
Q ss_pred ceeEEeecccHHHHhccccCCC---CccccCccccEEEecCCCCCCCCc--cEEEECcEEEEEEEeccccceeeeeCCCC
Q psy13259 211 TSYMIVNEESVNDLNTRVTCGE---KFTSYHFRPNIVVKNCIPYEEDTW--DWMKIGDAIFRVVKPCTRCIAITFNPETA 285 (345)
Q Consensus 211 ~pi~lis~aSl~~Ln~~l~~~~---~v~~~RFRpNIVI~g~~pf~Ed~W--~~i~IG~~~~~v~~pc~RC~~~tvdp~Tg 285 (345)
.++++++.+|++.+++.+ +. .+++.+||.||+++|.. +++-| +.++||++.|+|+.||.+|...+.. +|
T Consensus 67 rqV~l~~~E~~~~~~~~~--g~~~~~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG~avLeVTq~r~PC~~~~~~--~g 140 (246)
T 1o65_A 67 RALCHYPREHYLYWAREF--PEQAELFVAPAFGENLSTDGLT--ESNVYMGDIFRWGEALIQVSQPRSPCYKLNYH--FD 140 (246)
T ss_dssp GSEEEEETHHHHHHHHHC--GGGGGGCSTTTTCCSEEESSCC--TTTCBTTCEEEETTEEEEEEEECCCCTHHHHH--TT
T ss_pred CeEEECCHHHHHHHHHHh--CCCcccCCcccccCCEEECCcc--hhhCCCCCEEEECCEEEEEEeCcCccHhHHHH--hc
Confidence 579999999999999887 54 58999999999999974 34456 8999999999999999999988765 44
Q ss_pred CCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEEeee
Q psy13259 286 VKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFVASQ 343 (345)
Q Consensus 286 ~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v~~~ 343 (345)
.. ...+.+.+. +..|+|+.|.++|.|++||+|.+.++
T Consensus 141 ~~----~~~~~~~~~-----------------~r~G~y~rVl~~G~V~~GD~v~l~~r 177 (246)
T 1o65_A 141 IS----DIAQLMQNT-----------------GKVGWLYSVIAPGKVSADAPLELVSR 177 (246)
T ss_dssp CT----THHHHHHHH-----------------TCCCEEEEEEECEEEETTSCEEEEEC
T ss_pred Cc----CHHHHHhhC-----------------CCcEEEEEEeeCcEEcCCCEEEEecC
Confidence 33 334444432 35799999999999999999999876
No 4
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=91.49 E-value=0.16 Score=44.41 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=33.9
Q ss_pred eeEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEE
Q psy13259 34 IGRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFV 81 (345)
Q Consensus 34 ~~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~ 81 (345)
.++|.+|++||.||.....++++.++..|++ +||++.
T Consensus 9 ~g~v~~v~~~~~~g~~k~~v~~~~l~~~Gl~-----------GD~~~g 45 (195)
T 1oru_A 9 TAKAEGLYIADTKSFVTKQMDKLDFDYGGIP-----------GDLHFG 45 (195)
T ss_dssp EEEEEEEEECCSSCSSCEEESEEEEBTTBST-----------TSTTCS
T ss_pred eeEEEEEEeCCCCCccceecCcEEEecCCcC-----------CccccC
Confidence 5899999999999999999999999998887 799874
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.69 E-value=53 Score=21.38 Aligned_cols=6 Identities=0% Similarity=0.196 Sum_probs=2.2
Q ss_pred HHhHhh
Q psy13259 14 WYRQLQ 19 (345)
Q Consensus 14 ~~~~~~ 19 (345)
+|-|++
T Consensus 33 ~~~RRr 38 (44)
T 2ks1_B 33 LFMRRR 38 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333333
No 6
>3cxb_A Protein SIFA; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Salmonella typhimurium} PDB: 3hw2_A
Probab=22.40 E-value=2.1e+02 Score=26.47 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred eccccccCc-eeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceee-EEEEEeC-------CcEE
Q psy13259 42 IYPLKSGYY-KELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVL-VEMSVKD-------EETV 112 (345)
Q Consensus 42 iyPVKS~~g-~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~-i~~~~~~-------~~~l 112 (345)
+|=||--.| .++-++.+...... | ...|+.|.+++. .-...|.+|.|.. +...+.+ . .|
T Consensus 97 ~F~I~Deng~~eILsIt~~~d~Ys-------~-~i~g~~y~~~~~---~p~~lks~p~~~~~~~~~~~e~~~~~~p~-~l 164 (336)
T 3cxb_A 97 ILRIMDQNEENELLRITQNTDTFS-------C-EVMGNLYFLMKD---RPDILKSHPQMTAMIKRRYSEIVDYPLPS-TL 164 (336)
T ss_dssp EEEEECTTCCSEEEEEEECSSEEE-------E-EETTEEEEEEEC---CCCSCTTCTTCEEEEEEEEETTTTEEEEE-EE
T ss_pred EEEEEcCCCCceeEEEEEcCCcEE-------E-EECCcEEEEEcc---CcHHhhcCcceEEeecceecceecccCch-hh
Confidence 355999988 88888888844342 2 235888888886 3456789999854 4444432 3 78
Q ss_pred EEEEecCCCCeEEEeccccch
Q psy13259 113 EFNIRHDITPALVINVNKVRS 133 (345)
Q Consensus 113 ~l~~~~p~~~~l~v~l~~~~~ 133 (345)
.|+. +|.+.++|||++..+
T Consensus 165 ~l~l--~g~~~~sv~l~~i~~ 183 (336)
T 3cxb_A 165 CLNP--AGAPILSVPLDNIEG 183 (336)
T ss_dssp EEEC--SSSCCEEEECTHHHH
T ss_pred hccc--CCCceEEeEHHHHHH
Confidence 8988 999999999988764
No 7
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=17.68 E-value=37 Score=19.69 Aligned_cols=11 Identities=55% Similarity=0.576 Sum_probs=7.7
Q ss_pred ccchhhHHHHH
Q psy13259 2 ASAGALVVGYL 12 (345)
Q Consensus 2 ~~~~~~~~~~~ 12 (345)
+|+|+++.|++
T Consensus 7 ~AAGaVvGglG 17 (27)
T 2lbg_A 7 AAAGAVVGGLG 17 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhhhhhH
Confidence 56777777774
No 8
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=15.74 E-value=1.8e+02 Score=22.87 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=29.2
Q ss_pred ceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceee
Q psy13259 50 YKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVL 101 (345)
Q Consensus 50 g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~ 101 (345)
.+.+.+..|+. .|-.|+|.|...|-|+.+.++|+-..
T Consensus 12 Pv~~PeL~C~k---------------~d~~fVLRDGAsGlFlAAs~FPK~RE 48 (122)
T 1yua_A 12 PVPLPELPCEK---------------SDAYFVLRDGAAGVFLAANTFPKSRE 48 (122)
T ss_dssp SEEEEEEECSS---------------SSCEEEEECCSSSCEEEETTTTSCCC
T ss_pred CCCCCcccccc---------------cCCEEEeeCCchhhhhhhccCCcccc
Confidence 45666777664 38899999998999999999997543
No 9
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=13.52 E-value=1e+02 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.2
Q ss_pred EEEEcCCCEEeeCCeEEEee
Q psy13259 323 YAGLYHPGCIRTNDIVFVAS 342 (345)
Q Consensus 323 y~~v~~~G~I~VGD~V~v~~ 342 (345)
|...+.+...++||.|.+.+
T Consensus 41 ~~aHDe~n~~k~GD~V~I~E 60 (89)
T 1qd7_I 41 YKAHDEHNEAKVGDIVKIME 60 (89)
T ss_pred EEEeCCccCCCCCCEEEEEE
Confidence 34445667899999999876
No 10
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=12.49 E-value=35 Score=27.49 Aligned_cols=12 Identities=50% Similarity=0.509 Sum_probs=0.0
Q ss_pred CccchhhHHHHH
Q psy13259 1 MASAGALVVGYL 12 (345)
Q Consensus 1 ~~~~~~~~~~~~ 12 (345)
+||||++|.|++
T Consensus 26 aAaAGAVvGGlg 37 (142)
T 3heq_A 26 AAAAGAVVGGLG 37 (142)
T ss_dssp -----------C
T ss_pred HHHhhhhhhccc
Done!