RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13259
(345 letters)
>gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function
prediction only].
Length = 270
Score = 107 bits (268), Expect = 4e-27
Identities = 79/305 (25%), Positives = 118/305 (38%), Gaps = 50/305 (16%)
Query: 36 RVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKC 95
+S+L IYP+KS + L A G+ DR F+L D +FITA+
Sbjct: 3 TLSQLYIYPVKSLRGERLSRALVDASGLAG-----------DRRFMLVD-PDGRFITARR 50
Query: 96 YEQLVLVEMSVKDEETVEFNIRHDITPALVINVNKVRSKAQLKSFKMHFNEVVKAFDCGD 155
+V + + + + + + A ++ + HF A GD
Sbjct: 51 RPAMVRFTPAYEHDGLRLTAPDGEELYVRFADAQR----APVEVWGDHFT----ADAAGD 102
Query: 156 EASDWFSMFLLNKTNRNIRLGMCCDYKRTIANSWDSYTQVYNLLSDEDT--GRFSDITSY 213
A+DW S FL R + L WD + F+D
Sbjct: 103 AANDWLSGFL----GRAVSL------------RWDG-AGFARRVKAGPAVPVTFADGYPI 145
Query: 214 MIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTWDWMKIGDAIFRVVKPCT 273
++ N S+ DL R FRPN+VV+ + ED+W ++IG F VVKPC+
Sbjct: 146 LLFNTASLADLRRR--VPANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCS 203
Query: 274 RCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIR 333
RCI T +P+T + P EP+ TL +R D + G + G IR
Sbjct: 204 RCIFTTVDPDTGERRPGGEPLFTLNRFRTNPDAGG---------VLFGQNLIARNEGRIR 254
Query: 334 TNDIV 338
D V
Sbjct: 255 VGDAV 259
>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase.
Length = 805
Score = 102 bits (256), Expect = 6e-24
Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 65/303 (21%)
Query: 36 RVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKC 95
R+ + +YP+KS C +E+ P LS+ +L DR +++ + E +T K
Sbjct: 519 RLKSITVYPIKS----------CAGFSVERWP-LSETGLLYDREWMIQSLTGE-ILTQKK 566
Query: 96 YEQLVLVEMSVKDEETVEF----NIRHDITPALVINVNKVRSKAQLKSFKMHFNEVVKAF 151
++ L+ + E H L I + + S+ + + ++
Sbjct: 567 VPEMCLITTFIDLESGKLVVRAPRCDHK----LEIPL-ESDSQHEESGEVILCGNRAESM 621
Query: 152 DCGDEASDWFS------MFLLNKT--------NRNIRLGMCCDYKRTIANSWDSYTQVYN 197
G E ++WF+ L+ K+ NRN C D + ++
Sbjct: 622 SYGTEINEWFTNALGRRCTLVRKSSSNTRVCRNRNPSHSPCGDDESRLS----------- 670
Query: 198 LLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTS-----YHFRPNIVVKNCIPYE 252
F++ +++++E SV DLN R+ G++ FRPN+VV Y
Sbjct: 671 ---------FANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYA 721
Query: 253 EDTWDWMKIGDAIFRVVKPCTRCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKH 312
ED W + IGDA F V+ C RC I + ET + NP+ EP+ TL +YRR K K
Sbjct: 722 EDEWQSLSIGDAEFTVLGGCNRCQMINIDQETGLVNPSNEPLATLASYRR-----VKGKI 776
Query: 313 LEG 315
L G
Sbjct: 777 LFG 779
>gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain
is found to the N-terminus of pfam03473. The function of
this domain is unknown, however it is predicted to adopt
a beta barrel fold.
Length = 118
Score = 58.5 bits (142), Expect = 7e-11
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 35 GRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAK 94
RVS L +YP+KS + L A G+ DR +++ D S KFITA+
Sbjct: 2 ARVSSLFVYPIKSCRGESLSRAELTPAGL-----------RWDRRWMVVD-SDGKFITAR 49
Query: 95 CYEQLVLVEMSVKDEETVEFNI--RHDITPALVINVNKVRSKAQLKSFKMHFNEVVKAFD 152
+ +LVL+ ++ ++ + ++ L N + + + F D
Sbjct: 50 RHPRLVLIRTTLDEDGGLTLTAPGMPPLSVPLAANKF-QLVGVLV--WGLSF----SGRD 102
Query: 153 CGDEASDWFSMFL 165
CGD A+DWFS FL
Sbjct: 103 CGDAAADWFSDFL 115
>gnl|CDD|217583 pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase C-terminal)
domain is a superfamily of beta-strand-rich domains
identified in the molybdenum cofactor sulfurase and
several other proteins from both prokaryotes and
eukaryotes. These MOSC domains contain an absolutely
conserved cysteine and occur either as stand-alone
forms, or fused to other domains such as NifS-like
catalytic domain in Molybdenum cofactor sulfurase. The
MOSC domain is predicted to be a sulfur-carrier domain
that receives sulfur abstracted by the pyridoxal
phosphate-dependent NifS-like enzymes, on its conserved
cysteine, and delivers it for the formation of diverse
sulfur-metal clusters.
Length = 124
Score = 57.4 bits (139), Expect = 2e-10
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 215 IVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTW---DWMKIGDAIFRVVKP 271
+++ ES+ DLN R+ FR N+VV EEDTW D ++IG + V P
Sbjct: 23 LISRESLADLNARLGLRLLDPGR-FRENLVVSGL---EEDTWCIGDRIRIGGVLLEVSGP 78
Query: 272 CTRCIAITFNPETA 285
C C+ + + ET
Sbjct: 79 CKPCVMLCVDQETG 92
>gnl|CDD|197280 cd09183, PLDc_FAM83C_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83C. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83C (FAM83C). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83C shows high homology to other
FAM83 family members, indicating that FAM83C might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 274
Score = 31.4 bits (71), Expect = 0.58
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 195 VYNLLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTS 236
VY LL +E+ G F ++ + +N+ S+ ++ R CG+ + +
Sbjct: 170 VYLLLDEENLGHFLEMCEKLDLNKTSLPNMRIRSVCGDTYCT 211
>gnl|CDD|237835 PRK14850, PRK14850, penicillin-binding protein 1b; Provisional.
Length = 764
Score = 30.2 bits (68), Expect = 1.8
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 43 YPLKSGYY-----KELDCANCQ-LRGMEQIPSLSQEY-----ILRDRNFVLFDKSKEKFI 91
+PL S YY EL+ L GM + SL + L+ RN VLF K+K I
Sbjct: 271 FPLASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTLKRRNLVLFLLYKQKVI 330
Query: 92 TAKCYEQLVLVEMSVKDEETV 112
T K Y+ L ++V+ + +
Sbjct: 331 TRKLYKDLCSRPLNVQSKGNI 351
>gnl|CDD|217189 pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family.
Length = 487
Score = 28.4 bits (63), Expect = 7.1
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 263 DAIFRVVKPCTRCIAITFNPETAVKNPALEP----IRTLRTYRRLGDIDH 308
+A+ R+ P TR +++ ++ + EP IR ++ R G +
Sbjct: 142 EALHRLGIPTTRALSLVETGDSLWRRDEPEPAAVMIRFAPSHIRFGTFER 191
>gnl|CDD|102471 PRK06628, PRK06628, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 290
Score = 27.6 bits (61), Expect = 9.5
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 25/85 (29%)
Query: 155 DEASDWFS--------MFLLNK-TNRNIR--LGMCCDYKRTIANSWDSYTQVYNLLSDED 203
D+A+D S +F +NK RNI+ G CD ++ I +WD++
Sbjct: 30 DKAADICSFIARKVGILFAVNKIARRNIKAVFGDMCDVEKIIDQTWDNF----------- 78
Query: 204 TGRFSDITSYMIVNEESVNDLNTRV 228
GRF I + VN+ +L R+
Sbjct: 79 -GRF--IGEFTYVNKMDEAELERRI 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,431,941
Number of extensions: 1649637
Number of successful extensions: 1139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 13
Length of query: 345
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 247
Effective length of database: 6,590,910
Effective search space: 1627954770
Effective search space used: 1627954770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)