RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13259
         (345 letters)



>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella
           bronchiseptica [TaxId: 518]}
          Length = 128

 Score = 54.2 bits (130), Expect = 7e-10
 Identities = 16/129 (12%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 37  VSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCY 96
           +S     P+            C      Q      E     + +++ + +  +++     
Sbjct: 1   MSTTAYQPIAE----------C--GATTQ-----SEAAAYQKRWLVANDAG-QWLNRDLC 42

Query: 97  EQLVLVEMSVKDEETVEFNIRHDITPALVINVNKVRSKAQLKSFKMHFNEVVKAFDCGDE 156
            +L  V + ++    V   ++      L I ++ +     ++   +   + V   D G+ 
Sbjct: 43  PRLAEVSVELRMGYLV---LKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGEL 99

Query: 157 ASDWFSMFL 165
           A+ W S   
Sbjct: 100 AAAWISNHA 108


>d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis
           [TaxId: 1423]}
          Length = 182

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 18/132 (13%), Positives = 32/132 (24%), Gaps = 19/132 (14%)

Query: 215 IVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEE-DTWDWMKIGD-AIFRVVKPC 272
           IV+ E  N++  +     +        N+ V              +     A        
Sbjct: 68  IVSIEECNEIALK-MGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGEN 126

Query: 273 TRCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCI 332
             C             P            +L     +         + G+   +  PG +
Sbjct: 127 DPC-----------IQPGEVIQSYYPDQPKLASAFVRHAL-----GIRGIVCIVERPGAV 170

Query: 333 RTNDIVFVASQQ 344
            T D + V S Q
Sbjct: 171 YTGDEIEVHSYQ 182


>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli
           [TaxId: 562]}
          Length = 233

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 23/108 (21%)

Query: 231 GEKFTSYHFRPNIVVKNCIPYEEDTWDWMKIGDAIFRVVKPCTRCIAITFNPETAVKNPA 290
            E F +  F  N+             D  + G+A+ +V +P + C     N    + + A
Sbjct: 84  AELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPC--YKLNYHFDISDIA 141

Query: 291 LEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIV 338
                T +                      G    +  PG +  +  +
Sbjct: 142 QLMQNTGKV---------------------GWLYSVIAPGKVSADAPL 168


>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite
           (Plasmodium falciparum) [TaxId: 5833]}
          Length = 179

 Score = 27.4 bits (60), Expect = 1.8
 Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 133 SKAQLKSFKMHFNEVVKAFDCGDEA----SDWFSMFLLNKTNRNIRLGMCCDYKRTIANS 188
           S   +  ++  ++  +K  +  D      +D + +    K+    ++    D   +  +S
Sbjct: 59  STKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDS 118

Query: 189 WDSYTQVYNLLSDEDTGRFSDITSYMIVNEESVNDLN 225
            +      N        RF       IV    +  + 
Sbjct: 119 MNMLVDKSNFFMGMRPWRFV-----AIVENNILVKMF 150


>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri
           [TaxId: 316]}
          Length = 98

 Score = 25.7 bits (56), Expect = 3.0
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 257 DWMKIGDAIFR------VVKPCTRCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKA 310
              K G+ +FR       +  CT C A           P L       T ++L D     
Sbjct: 6   ALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGN 65

Query: 311 KHLEGHSPVMGVYAG 325
           +  +G + +M   A 
Sbjct: 66  RTNDGDTMIMRGVAA 80


>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus
          musculus), beta-chain [TaxId: 10090]}
          Length = 112

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 4/15 (26%), Positives = 10/15 (66%)

Query: 11 YLYWYRQLQYKRPKY 25
          ++ WY+Q   K+ ++
Sbjct: 32 WMSWYQQDLQKQLQW 46


>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate
           uridylyltransferase {Escherichia coli [TaxId: 562]}
          Length = 176

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 230 CGEKFTSYHFRPNIVVKNCIPYEEDTWDWMKIGDAIFRVVKPCTRCIAITFNP--ETAVK 287
            G+K   Y     +   +      DT D  +  D + R          I F+P     + 
Sbjct: 61  TGDKNPDY-TGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLP 119

Query: 288 NPALEPIRT-LRTYR-RLGDIDHKAKHL---EGHSPVMGVYAGLYHP 329
             ++  +   ++T++ +  ++      +   E     MG      HP
Sbjct: 120 ELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC--SNPHP 164


>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 95

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 8/59 (13%), Positives = 17/59 (28%)

Query: 182 KRTIANSWDSYTQVYNLLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTSYHFR 240
            R+I  SW    Q   ++ D +   +    +    +         R+        Y  +
Sbjct: 14  MRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQ 72


>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
           {Soybean (Glycine max) [TaxId: 3847]}
          Length = 87

 Score = 24.5 bits (53), Expect = 7.5
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 68  SLSQEYILRDRN-FVLFDKSKEKFITAK-CYEQLVLVEMSVKDEETVEFNIRHDI 120
            LS+E I   +  F + D      IT     + L  V   + + E  +     DI
Sbjct: 16  RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADI 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,350,600
Number of extensions: 63530
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 10
Length of query: 345
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,226,816
Effective search space: 317745344
Effective search space used: 317745344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)