BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13262
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 10/89 (11%)
Query: 139 VCVPTFLGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRKP 194
+C P L E+ P++ S +PC T GD +IPN +IG C+E+ + G K
Sbjct: 736 MCRPVILLPEDTPPFLELKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEQENG----KA 789
Query: 195 TVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 790 YCVLVTGPNMGGKSTLMRQAGLLAVMAQM 818
>pdb|3TOW|A Chain A, Crystal Structure Of The Mabp Domain Of Mvb12b Of Human
Escrt-I Complex
Length = 152
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 15 PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
PIT + V+ + P+GY V+++T D DAD+W++ F + TRYLC +++ S +
Sbjct: 3 PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 61
Query: 73 DYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSN 121
++ ++ +I+ K+T P GF I T+D+ + ++ + + P+ S
Sbjct: 62 GNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDST 110
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 20/74 (27%)
Query: 151 HPYISALESLYPCATGDQ-TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKST 209
HP I L G+Q Y+PN+T + ED E V+++TGPNMGGKS+
Sbjct: 648 HPVIDVL-------LGEQDQYVPNNTDLS---EDSER---------VMIITGPNMGGKSS 688
Query: 210 VMRQLGLITILAQM 223
++Q+ LITI+AQ+
Sbjct: 689 YIKQVALITIMAQI 702
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
+L++TGPNMGGKST MRQ LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
+L++TGPNMGGKST MRQ LI ++A
Sbjct: 608 MLIITGPNMGGKSTYMRQTALIALMA 633
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
+L++TGPNMGGKST MRQ LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
+L++TGPNMGGKST MRQ LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
+L++TGPNMGGKST MRQ LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
+L++TGPNMGGKST MRQ LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQM 223
++L+TGPNM GKST +RQ LI +LAQ+
Sbjct: 578 LVLITGPNMAGKSTFLRQTALIALLAQV 605
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 934
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
K ++TGPNMGGKST +RQ G+I ++AQ+
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQI 691
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
Length = 934
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
K ++TGPNMGGKST +RQ G+I ++AQ+
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQI 691
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 161 YPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITIL 220
+P ++PN D+E E ++L+TGPN GKST +RQ LI +L
Sbjct: 442 HPVVERRTEFVPN---------DLEXAHE------LVLITGPNXAGKSTFLRQTALIALL 486
Query: 221 AQM 223
AQ+
Sbjct: 487 AQV 489
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 161 YPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITIL 220
+P ++PN D+E E ++L+TGPN GKST +RQ LI +L
Sbjct: 558 HPVVERRTEFVPN---------DLEXAHE------LVLITGPNXAGKSTFLRQTALIALL 602
Query: 221 AQM 223
AQ+
Sbjct: 603 AQV 605
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 161 YPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITIL 220
+P ++PN D+E E ++L+TGPN GKST +RQ LI +L
Sbjct: 558 HPVVERRTEFVPN---------DLEXAHE------LVLITGPNXAGKSTFLRQTALIALL 602
Query: 221 AQM 223
AQ+
Sbjct: 603 AQV 605
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 35.0 bits (79), Expect = 0.034, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 197 LLLTGPNMGGKSTVMRQLGLITILA 221
L++TGPN GGKST RQ LI + A
Sbjct: 610 LIITGPNXGGKSTYXRQTALIALXA 634
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 163 CATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
+ D+ + S +I R ++ GE +R+ LLL G GKST ++Q+ +I
Sbjct: 5 LSAEDKAAVERSKMIDR---NLREDGERSRRELKLLLLGTGESGKSTFIKQMRII 56
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 163 CATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
+ D+ + S +I R ++ GE +R+ LLL G GKST ++Q+ +I
Sbjct: 7 LSAEDKAAVERSKMIDR---NLREDGERSRRELKLLLLGTGESGKSTFIKQMRII 58
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE K LLL G GKST+++Q+ +I
Sbjct: 8 DKAAVERSKMIDR---NLREDGEKAAKEVKLLLLGAGESGKSTIVKQMKII 55
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 8 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 55
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 9 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 56
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 9 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 56
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 8 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 55
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 8 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 55
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 8 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 55
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 15 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 62
>pdb|2QP2|A Chain A, Structure Of A Macpf/perforin-like Protein
Length = 511
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 20/122 (16%)
Query: 71 QIDYIVENICIINEKETPPDGFCLIARTLDSD---QGQICERGGVVDYKPQQSNNTIFSQ 127
DYI E I IN TPP+G+ + T D + +G IC Y P N ++
Sbjct: 358 HADYIDEIIIGINNTNTPPEGYIGLKSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITE 417
Query: 128 RNIL--KDMYQQG--VCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKED 183
+ +D +G V +P + YIS + LY C Y+P + +D
Sbjct: 418 LKFITVRDKSPEGDWVKIPQDI-------YISPNQYLYLC------YLPAKYSAEKAIKD 464
Query: 184 VE 185
++
Sbjct: 465 IQ 466
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 11 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 58
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 190 GNRKPTVLLLTGPNMGGKSTVMRQLG 215
GN +P VL++ G N GGK+T + +L
Sbjct: 112 GNSRPAVLMIVGVNGGGKTTTLGKLA 137
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
D+ + S +I R ++ GE + LLL G GKST+++Q+ +I
Sbjct: 8 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAVESGKSTIVKQMKII 55
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216
D+ + S +I R ++ GE + LLL G GKST+++Q+ +
Sbjct: 9 DKAAVERSKMIDR---NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKI 55
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 190 GNRKPTVLLLTGPNMGGKSTVMRQL 214
G RKP V+++ G N GGK+T + +L
Sbjct: 96 GFRKPAVIMIVGVNGGGKTTSLGKL 120
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 190 GNRKPTVLLLTGPNMGGKSTVMRQL 214
G RKP V+++ G N GGK+T + +L
Sbjct: 153 GFRKPAVIMIVGVNGGGKTTSLGKL 177
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 188 GEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
GE K LLL G GKST+++Q+ +I
Sbjct: 3 GEKAAKEVKLLLLGAGESGKSTIVKQMKII 32
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 188 GEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
GE K LLL G GKST+++Q+ +I
Sbjct: 3 GEKAAKEVKLLLLGAGESGKSTIVKQMKII 32
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 21 VIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTR 59
+ED+Q G+ + ++ + Q D + RES LR++R
Sbjct: 248 ALEDLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSR 286
>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
Carbamoyl Phosphate
pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
Phosphate
pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
Phosphate
Length = 657
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 21 VIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTR 59
+ED+Q G+ + ++ + Q D + RES LR++R
Sbjct: 248 ALEDLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSR 286
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1 MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVIS 36
M++ + F+P +T E + KCP YTVI+
Sbjct: 31 MDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 66
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1 MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVIS 36
M++ + F+P +T E + KCP YTVI+
Sbjct: 31 MDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 66
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 81 IINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIF 125
+I E E+ FCL R D +QG++ V YK + +N F
Sbjct: 30 LIRESESTAGSFCLSVRDFDQNQGEV-----VKHYKIRNLDNGGF 69
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 81 IINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIF 125
+I E E+ FCL R D +QG++ V YK + +N F
Sbjct: 30 LIRESESTAGSFCLSVRDFDQNQGEV-----VKHYKIRNLDNGGF 69
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1 MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVIS 36
M++ + F+P +T E + KCP YTVI+
Sbjct: 32 MDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,027,943
Number of Sequences: 62578
Number of extensions: 288673
Number of successful extensions: 683
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 42
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)