BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13262
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
Length = 1360
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 10/89 (11%)
Query: 139 VCVPTFLGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRKP 194
+C P L E+ P++ S +PC T GD +IPN +IG C+E+ + G K
Sbjct: 1074 MCRPVILLPEDTPPFLELKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEQENG----KA 1127
Query: 195 TVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 1128 YCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1156
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3
Length = 1358
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 15/98 (15%)
Query: 135 YQQG----VCVPTF-LGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVE 185
Y QG +C P L E+ HP++ S +PC T GD +IPN +IG C+E+ E
Sbjct: 1063 YSQGGDGPMCRPEIVLPGEDTHPFLEFKGSRHPCITKTFFGDD-FIPNDILIG-CEEEAE 1120
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G K +L+TGPNMGGKST++RQ GL+ ++AQ+
Sbjct: 1121 EHG----KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQL 1154
>sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila
melanogaster GN=Msh6 PE=1 SV=2
Length = 1190
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 136 QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPT 195
Q +CVP + + P+I E +PCA TYIPN +G E
Sbjct: 906 QMVICVPELVS-DADQPFIQLEEGYHPCANA-STYIPNGLELGTASE-----------AP 952
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQM 223
+ LLTGPNMGGKST+MR++GL+ I+AQ+
Sbjct: 953 LSLLTGPNMGGKSTLMREVGLLVIMAQI 980
>sp|Q9H7P6|MB12B_HUMAN Multivesicular body subunit 12B OS=Homo sapiens GN=MVB12B PE=1 SV=2
Length = 319
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 15 PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
PIT + V+ + P+GY V+++T D DAD+W++ F + TRYLC +++ S +
Sbjct: 49 PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 107
Query: 73 DYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSN 121
++ ++ +I+ K+T P GF I T+D+ + ++ + + P+ S
Sbjct: 108 GNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDST 156
>sp|Q6KAU4|MB12B_MOUSE Multivesicular body subunit 12B OS=Mus musculus GN=Mvb12b PE=2 SV=2
Length = 317
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 15 PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
PIT + V+ + P+GY V+++T D DAD+W++ F + TRYLC +++ S +
Sbjct: 47 PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 105
Query: 73 DYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQS 120
++ ++ +I+ K+T P GF I T+D+ + ++ + + P+ S
Sbjct: 106 GNVLVDMKLIDVKDTLPVGFIPIQETVDTQEVVFRKKRLCIKFIPRDS 153
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1
SV=2
Length = 1324
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 133 DMYQQGVCVPTFLG-LEEPHPYISALESLYPCATGDQ----TYIPNSTVIGRCKEDVESG 187
D Y+ C P G + P++SA +P GD +++PN+ IG
Sbjct: 1021 DSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIG--------- 1071
Query: 188 GEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G K + +LLTGPNMGGKST++RQ+ L ILAQ+
Sbjct: 1072 --GAEKASFILLTGPNMGGKSTLLRQVCLAVILAQI 1105
>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=msh6 PE=1 SV=1
Length = 1254
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 16/86 (18%)
Query: 140 CVPTFLGLEEPHPYISALESLYPC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVL 197
C P + ++ H Y L +PC A+ T++PN V+G GE P ++
Sbjct: 975 CRPEIIEQKDGHLYFEELR--HPCINASAASTFVPNDVVLG---------GES---PNMI 1020
Query: 198 LLTGPNMGGKSTVMRQLGLITILAQM 223
+LTGPNM GKST++RQ+ + I+AQ+
Sbjct: 1021 VLTGPNMAGKSTLLRQVCIAVIMAQL 1046
>sp|A6RPB6|MSH3_BOTFB DNA mismatch repair protein msh3 OS=Botryotinia fuckeliana (strain
B05.10) GN=msh3 PE=3 SV=2
Length = 1133
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 24/92 (26%)
Query: 138 GVCVPTFLGLEE------PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGN 191
G C PTF E HP + E L P A YIPN T + + +
Sbjct: 842 GYCKPTFTSSTEISVIGGRHPMV---EQLLPSA-----YIPNDTSLSTSPDHTRA----- 888
Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
LLLTGPNMGGKS+ +RQ+ LI+ILAQ+
Sbjct: 889 -----LLLTGPNMGGKSSYVRQVALISILAQI 915
>sp|A7EC69|MSH3_SCLS1 DNA mismatch repair protein msh3 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=msh3 PE=3 SV=1
Length = 1130
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 24/92 (26%)
Query: 138 GVCVPTFLGLEE------PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGN 191
G C PTF E HP + E L P TYIPN T + ++ +
Sbjct: 839 GYCKPTFTSTTEISVVGGRHPMV---EQLLP-----STYIPNDTSLSTDPDNTRA----- 885
Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
LL+TGPNMGGKS+ +RQ+ LI+ILAQ+
Sbjct: 886 -----LLITGPNMGGKSSYVRQVALISILAQI 912
>sp|Q65JE2|MUTS_BACLD DNA mismatch repair protein MutS OS=Bacillus licheniformis (strain
DSM 13 / ATCC 14580) GN=mutS PE=3 SV=1
Length = 869
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 13/56 (23%)
Query: 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
Q+Y+PNS +G+ ++ +LL+TGPNM GKST MRQ+ LI+ILAQ+
Sbjct: 582 QSYVPNSCEMGKGRQ-------------MLLITGPNMSGKSTYMRQMALISILAQI 624
>sp|B2G6E5|MUTS_LACRJ DNA mismatch repair protein MutS OS=Lactobacillus reuteri (strain
JCM 1112) GN=mutS PE=3 SV=1
Length = 881
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q Y+PN ++G ED + +LL+TGPNM GKST MRQL LI ++AQ+
Sbjct: 583 GHQEYVPNDVLMG---EDTD----------ILLITGPNMSGKSTYMRQLALIAVMAQI 627
>sp|A5VIW9|MUTS_LACRD DNA mismatch repair protein MutS OS=Lactobacillus reuteri (strain
DSM 20016) GN=mutS PE=3 SV=1
Length = 881
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q Y+PN ++G ED + +LL+TGPNM GKST MRQL LI ++AQ+
Sbjct: 583 GHQEYVPNDVLMG---EDTD----------ILLITGPNMSGKSTYMRQLALIAVMAQI 627
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6
PE=3 SV=1
Length = 1260
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 21/110 (19%)
Query: 123 TIFSQRNILKDMYQQG------VCVPTFLGLEEPHPYISALESLYPC---ATGDQTYIPN 173
T SQ + L +Y+ +C P F+ ++ +I + +PC +GD +IPN
Sbjct: 952 TKLSQLDCLLSLYKVSFQSSIQMCRPLFVSSDQ-RGFIDVKDMRHPCIYSKSGDD-FIPN 1009
Query: 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
D+ E N P++++LTGPNMGGKST++RQ ++ I+AQM
Sbjct: 1010 ---------DISLNTENN-PPSLMVLTGPNMGGKSTLLRQSCILVIMAQM 1049
>sp|A3CR17|MUTS_STRSV DNA mismatch repair protein MutS OS=Streptococcus sanguinis (strain
SK36) GN=mutS PE=3 SV=1
Length = 849
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q+YIPNS ++ +++ + L+TGPNM GKST MRQL +I I+AQM
Sbjct: 580 GAQSYIPNSILL-------------DQETDIQLITGPNMSGKSTYMRQLAIIVIMAQM 624
>sp|B9MJU0|MUTS_CALBD DNA mismatch repair protein MutS OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=mutS PE=3
SV=1
Length = 863
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 12/67 (17%)
Query: 166 GDQTYIPN------STVIGRCK---EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216
GD+ YI N +IGR D E NR VL++TGPNM GKST MRQ+ L
Sbjct: 566 GDRIYIKNGRHPVVEKMIGRGNFIPNDTELDQAENR---VLIITGPNMAGKSTYMRQVAL 622
Query: 217 ITILAQM 223
I I+AQM
Sbjct: 623 IVIMAQM 629
>sp|B8JA66|MUTS_ANAD2 DNA mismatch repair protein MutS OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=mutS PE=3 SV=1
Length = 882
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
HP + A+ P A Y+PN ++ + E G G +L++TGPNM GKSTV
Sbjct: 587 HPVVEAVLPDGPAA-----YVPNDVLVAS-RGAPECGEHG----ALLVITGPNMAGKSTV 636
Query: 211 MRQLGLITILAQM 223
MRQ L+ +LAQM
Sbjct: 637 MRQAALVVLLAQM 649
>sp|B2GB17|MUTS_LACF3 DNA mismatch repair protein MutS OS=Lactobacillus fermentum (strain
NBRC 3956 / LMG 18251) GN=mutS PE=3 SV=1
Length = 880
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q Y+PN DV GG+ ++LL+TGPNM GKST MRQL L ++AQM
Sbjct: 583 GHQEYVPN---------DVLMGGD----TSILLITGPNMSGKSTYMRQLALTAVMAQM 627
>sp|A8AZU4|MUTS_STRGC DNA mismatch repair protein MutS OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=mutS PE=3
SV=1
Length = 847
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q+YIPNS E +++ + L+TGPNM GKST MRQL +I I+AQM
Sbjct: 580 GAQSYIPNSI-------------ELDQETDIQLITGPNMSGKSTYMRQLAMIVIMAQM 624
>sp|A4IMI0|MUTS_GEOTN DNA mismatch repair protein MutS OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=mutS PE=3 SV=1
Length = 910
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G QTY+PN + NR+ +LL+TGPNM GKST MRQ+ L I+AQ+
Sbjct: 585 GAQTYVPNDCYM-------------NREREMLLITGPNMAGKSTYMRQVALTAIMAQI 629
>sp|Q38YR4|MUTS_LACSS DNA mismatch repair protein MutS OS=Lactobacillus sakei subsp.
sakei (strain 23K) GN=mutS PE=3 SV=1
Length = 867
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q YIPN+ +G+ + +LL+TGPNM GKST MRQL L I+AQM
Sbjct: 587 GRQKYIPNAVQMGK-------------ETDMLLITGPNMSGKSTYMRQLALTVIMAQM 631
>sp|A4XL47|MUTS_CALS8 DNA mismatch repair protein MutS OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mutS
PE=3 SV=1
Length = 863
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 12/67 (17%)
Query: 166 GDQTYIPN------STVIGRCK---EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216
GD+ YI N +IG D E + NR VL++TGPNM GKST MRQ+ L
Sbjct: 566 GDRIYIKNGRHPVVEKMIGYSNFVPNDTELDNDQNR---VLIITGPNMAGKSTYMRQVAL 622
Query: 217 ITILAQM 223
I I+AQM
Sbjct: 623 IVIMAQM 629
>sp|A2SJQ7|MUTS_METPP DNA mismatch repair protein MutS OS=Methylibium petroleiphilum
(strain PM1) GN=mutS PE=3 SV=1
Length = 870
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 140 CVPTFLGLEEPHPYISALESLYPCA------TGDQTYIPNSTVIGRCKEDVESGGEGNRK 193
C P F+ P I + +P TG ++IPN C+ D NR+
Sbjct: 572 CCPEFVS----QPCIEIEQGRHPVVEARLAETGGGSFIPND-----CRLD------ANRR 616
Query: 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+L++TGPNMGGKST MRQ+ L+ +LA M
Sbjct: 617 --MLVITGPNMGGKSTFMRQVALVVLLAAM 644
>sp|A4W4J7|MUTS_STRS2 DNA mismatch repair protein MutS OS=Streptococcus suis (strain
98HAH33) GN=mutS PE=3 SV=1
Length = 847
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G QTYIPNS + N + L+TGPNM GKST MRQL +I I+AQM
Sbjct: 581 GKQTYIPNSIHL-------------NTDTHMQLITGPNMSGKSTYMRQLAVIVIMAQM 625
>sp|A7HZ64|MUTS_PARL1 DNA mismatch repair protein MutS OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=mutS PE=3
SV=1
Length = 908
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
HP + A A Q ++PN T + ESGG + + LLTGPNM GKST
Sbjct: 623 HPVVEA-----ALARTGQAFVPNDTSL-----SAESGGGKH----IWLLTGPNMAGKSTF 668
Query: 211 MRQLGLITILAQM 223
+RQ LI I+AQM
Sbjct: 669 LRQNALIAIMAQM 681
>sp|Q048Y4|MUTS_LACDB DNA mismatch repair protein MutS OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=mutS PE=3
SV=1
Length = 856
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 26/98 (26%)
Query: 132 KDMYQQGVCVPTFLGLEE------PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVE 185
+D ++ C P+F E HP + E++ P + YIPN V+ ED
Sbjct: 552 QDAEEKNYCRPSFSSKNEIAVKNGRHPVV---EAVLPAGS----YIPNDLVM---DEDT- 600
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
++ L+TGPNM GKST MRQL LI I+AQ+
Sbjct: 601 ---------SIYLITGPNMSGKSTYMRQLALIAIMAQI 629
>sp|Q2IIJ3|MUTS_ANADE DNA mismatch repair protein MutS OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=mutS PE=3 SV=1
Length = 882
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 14/75 (18%)
Query: 151 HPYISALESLYPCATGDQTYIPNSTVIGR--CKEDVESGGEGNRKPTVLLLTGPNMGGKS 208
HP + A+ P A Y+PN ++ E E G +L++TGPNM GKS
Sbjct: 587 HPVVEAVLPDGPAA-----YVPNDVLVASRGAPECAEHGA-------LLVITGPNMAGKS 634
Query: 209 TVMRQLGLITILAQM 223
TVMRQ L+ +LAQM
Sbjct: 635 TVMRQAALVVLLAQM 649
>sp|A7HC64|MUTS_ANADF DNA mismatch repair protein MutS OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=mutS PE=3 SV=1
Length = 882
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 136 QQGVCVPTFLGLE------EPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGE 189
++G C P G E HP + E++ P G ++PN ++ E
Sbjct: 565 ERGYCRPEVDGSEVLEIVDGRHPVV---EAVLP--EGPAGFVPNDVLVAS-----RGALE 614
Query: 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
R + ++TGPNM GKSTVMRQ L+T+LAQM
Sbjct: 615 CERLGALHVITGPNMAGKSTVMRQAALVTLLAQM 648
>sp|A1AMW9|MUTS_PELPD DNA mismatch repair protein MutS OS=Pelobacter propionicus (strain
DSM 2379) GN=mutS PE=3 SV=1
Length = 870
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 19/72 (26%)
Query: 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
HP I A++ + ++PN T++ GGE +L++TGPNM GKST
Sbjct: 590 HPVIEAMKL-------GERFVPNDTLL--------DGGESQ----ILMITGPNMAGKSTY 630
Query: 211 MRQLGLITILAQ 222
MRQ+ LIT++AQ
Sbjct: 631 MRQVALITLMAQ 642
>sp|Q1MMA5|MUTS_RHIL3 DNA mismatch repair protein MutS OS=Rhizobium leguminosarum bv.
viciae (strain 3841) GN=mutS PE=3 SV=1
Length = 908
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G+R + LLTGPNMGGKST +RQ LI+ILAQM
Sbjct: 651 GDRDGAIWLLTGPNMGGKSTFLRQNALISILAQM 684
>sp|Q88UZ7|MUTS_LACPL DNA mismatch repair protein MutS OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=mutS PE=3 SV=1
Length = 896
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G+Q+Y+PN+ + + TVLL+TGPNM GKST MRQL L I+AQ+
Sbjct: 585 GNQSYVPNNVTM-------------SPDETVLLITGPNMSGKSTYMRQLALTVIMAQI 629
>sp|A7Z4X5|MUTS_BACA2 DNA mismatch repair protein MutS OS=Bacillus amyloliquefaciens
(strain FZB42) GN=mutS PE=3 SV=1
Length = 862
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 13/56 (23%)
Query: 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
Q Y+PN+ ++G +E +LL+TGPNM GKST MRQ+ L++I+AQ+
Sbjct: 583 QEYVPNNCLMGDSRE-------------MLLITGPNMSGKSTYMRQIALLSIMAQI 625
>sp|O74773|MSH2_SCHPO DNA mismatch repair protein msh2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=msh2 PE=3 SV=2
Length = 982
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 14/71 (19%)
Query: 158 ESLYPC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215
++ +PC A D +IPN ++E G +L++TGPNMGGKST +RQ+G
Sbjct: 688 QARHPCLEAQDDVKFIPNDV-------NLEHGS-----SELLIITGPNMGGKSTYIRQVG 735
Query: 216 LITILAQMENP 226
+IT++AQ+ P
Sbjct: 736 VITVMAQIGCP 746
>sp|Q1G938|MUTS_LACDA DNA mismatch repair protein MutS OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC 11842 / DSM 20081)
GN=mutS PE=3 SV=1
Length = 856
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 26/98 (26%)
Query: 132 KDMYQQGVCVPTFLGLEE------PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVE 185
+D ++ C P+F E HP + A+ P + YIPN V+
Sbjct: 552 QDAEEKNYCRPSFSSKNEIAVKNGRHPVVGAV---LPAGS----YIPNDLVM-------- 596
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+ ++ L+TGPNM GKST MRQL LI I+AQ+
Sbjct: 597 -----DEDTSIYLITGPNMSGKSTYMRQLALIAIMAQI 629
>sp|Q3SJP0|MUTS_THIDA DNA mismatch repair protein MutS OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=mutS PE=3 SV=1
Length = 850
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 18/84 (21%)
Query: 139 VCVPTFLGLEEPHPYISALESLYPCATGD-QTYIPNSTVIGRCKEDVESGGEGNRKPTVL 197
+C P F P I +P + +IPN V+ R ++ +L
Sbjct: 562 LCAPEF----SDDPCIVIRGGRHPVVEAQVEHFIPNDVVLNRTRQ-------------ML 604
Query: 198 LLTGPNMGGKSTVMRQLGLITILA 221
L+TGPNMGGKST MRQ+ LIT++A
Sbjct: 605 LITGPNMGGKSTYMRQVALITLMA 628
>sp|Q11B27|MUTS_MESSB DNA mismatch repair protein MutS OS=Mesorhizobium sp. (strain BNC1)
GN=mutS PE=3 SV=1
Length = 881
Score = 50.8 bits (120), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
S EG + + LLTGPNMGGKST +RQ LI +LAQM
Sbjct: 617 SPAEGEKAGAIWLLTGPNMGGKSTFLRQNALIAVLAQM 654
>sp|Q1DQ73|MSH3_COCIM DNA mismatch repair protein MSH3 OS=Coccidioides immitis (strain
RS) GN=MSH3 PE=3 SV=2
Length = 1125
Score = 50.8 bits (120), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 12/55 (21%)
Query: 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
TY+PN D E G +G R LL+TGPNMGGKS+ +RQ+ LI+I+ Q+
Sbjct: 878 TYVPN---------DTELGTDGTR---ALLVTGPNMGGKSSYVRQVALISIMGQI 920
>sp|Q3M892|MUTS_ANAVT DNA mismatch repair protein MutS OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=mutS PE=3 SV=1
Length = 854
Score = 50.8 bits (120), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 18/92 (19%)
Query: 137 QGVCVPTFLGLEEPHPYISALESLYPCATGDQT-----YIPNSTVIGRCKEDVESGGEGN 191
QG C P + E I+ ++ +P +Q+ ++PNST +G S E +
Sbjct: 602 QGYCRPEMVNGRE----IAIIDGRHPVV--EQSLPAGFFVPNSTQLG-------SNEETH 648
Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+ P +++LTGPN GKS +RQ+GLI ++AQ+
Sbjct: 649 QLPDLIILTGPNASGKSCYLRQVGLIQLMAQI 680
>sp|B0S1C1|MUTS_FINM2 DNA mismatch repair protein MutS OS=Finegoldia magna (strain ATCC
29328) GN=mutS PE=3 SV=1
Length = 856
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 15/73 (20%)
Query: 154 ISALESLYP---CATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
I LES +P + G +I N +IG K D++ L+TGPNM GKST
Sbjct: 571 IDVLESRHPIVELSVGQSEFITNDILIGSGKNDIQ------------LITGPNMSGKSTY 618
Query: 211 MRQLGLITILAQM 223
+RQ+ LI IL Q+
Sbjct: 619 LRQVALICILNQI 631
>sp|Q03R33|MUTS_LACBA DNA mismatch repair protein MutS OS=Lactobacillus brevis (strain
ATCC 367 / JCM 1170) GN=mutS PE=3 SV=1
Length = 892
Score = 50.4 bits (119), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q+Y+PN + + + +LL+TGPNM GKST MRQL L I+AQM
Sbjct: 585 GRQSYVPNDVTM-------------DDQTNILLITGPNMSGKSTYMRQLALTVIMAQM 629
>sp|Q035Z2|MUTS_LACC3 DNA mismatch repair protein MutS OS=Lactobacillus casei (strain
ATCC 334) GN=mutS PE=3 SV=1
Length = 857
Score = 50.4 bits (119), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
G +YIPN ++ N +LL+TGPNM GKST MRQL LI I+AQ
Sbjct: 586 GRDSYIPNDVIM-------------NHDTDMLLITGPNMSGKSTYMRQLALIVIMAQ 629
>sp|P49849|MUTS_BACSU DNA mismatch repair protein MutS OS=Bacillus subtilis (strain 168)
GN=mutS PE=3 SV=3
Length = 858
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 16/73 (21%)
Query: 154 ISALESLYPCA---TGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
+ +E +P Q Y+PN+ ++G NR+ +LL+TGPNM GKST
Sbjct: 565 VEVIEGRHPVVEKVMDSQEYVPNNCMMG-----------DNRQ--MLLITGPNMSGKSTY 611
Query: 211 MRQLGLITILAQM 223
MRQ+ LI+I+AQ+
Sbjct: 612 MRQIALISIMAQI 624
>sp|B4UCY7|MUTS_ANASK DNA mismatch repair protein MutS OS=Anaeromyxobacter sp. (strain K)
GN=mutS PE=3 SV=1
Length = 882
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
HP + A+ P A Y+PN ++ ++ E G +L++TGPNM GKSTV
Sbjct: 587 HPVVEAVLPDGPAA-----YVPNDVLVAS-RDAPECAEHG----ALLVITGPNMAGKSTV 636
Query: 211 MRQLGLITILAQM 223
MR+ L+ +LAQM
Sbjct: 637 MREAALVVLLAQM 649
>sp|B3W9W4|MUTS_LACCB DNA mismatch repair protein MutS OS=Lactobacillus casei (strain
BL23) GN=mutS PE=3 SV=1
Length = 857
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
G +YIPN ++ N +LL+TGPNM GKST MRQL LI I+AQ
Sbjct: 586 GRDSYIPNDVIM-------------NHDTDMLLITGPNMSGKSTYMRQLALIVIMAQ 629
>sp|C5D9H5|MUTS_GEOSW DNA mismatch repair protein MutS OS=Geobacillus sp. (strain WCH70)
GN=mutS PE=3 SV=1
Length = 860
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G QTY+PN + + +E +LL+TGPNM GKST MRQ+ L I+AQ+
Sbjct: 584 GAQTYVPNDCYMNKERE-------------LLLITGPNMSGKSTYMRQIALTVIMAQI 628
>sp|Q03EQ7|MUTS_PEDPA DNA mismatch repair protein MutS OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=mutS PE=3 SV=1
Length = 873
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q+Y+PN+ D++ + +LL+TGPNM GKST MRQL L I+AQM
Sbjct: 587 GHQSYVPNNI-------DMDDNTD------ILLITGPNMSGKSTYMRQLALTVIMAQM 631
>sp|B9DW73|MUTS_STRU0 DNA mismatch repair protein MutS OS=Streptococcus uberis (strain
ATCC BAA-854 / 0140J) GN=mutS PE=3 SV=1
Length = 847
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 13/58 (22%)
Query: 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G Q YIPN+ + N+ ++ L+TGPNM GKST MRQL L I+AQM
Sbjct: 580 GVQEYIPNTI-------------QFNQNTSIQLITGPNMSGKSTYMRQLALTVIMAQM 624
>sp|Q2JT35|MUTS_SYNJA DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
JA-3-3Ab) GN=mutS PE=3 SV=1
Length = 882
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 11/54 (20%)
Query: 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
++PNS +G P +++LTGPNM GKST +RQ+GLI ILAQM
Sbjct: 621 FVPNSVRLG-----------SPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQM 663
>sp|Q2JIA6|MUTS_SYNJB DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=mutS PE=3 SV=1
Length = 884
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 11/54 (20%)
Query: 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
++PNS +G P +++LTGPNM GKST +RQ+GLI ILAQM
Sbjct: 631 FVPNSVQLG-----------SPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQM 673
>sp|Q9SMV7|MSH7_ARATH DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana GN=MSH7
PE=1 SV=1
Length = 1109
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 154 ISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQ 213
I L + A Q +PN ++G + G+ P LLLTGPNMGGKST++R
Sbjct: 811 IQGLWHPFAVAADGQLPVPNDILLGEARR-----SSGSIHPRSLLLTGPNMGGKSTLLRA 865
Query: 214 LGLITILAQM 223
L I AQ+
Sbjct: 866 TCLAVIFAQL 875
>sp|A5G447|MUTS_GEOUR DNA mismatch repair protein MutS OS=Geobacter uraniireducens
(strain Rf4) GN=mutS PE=3 SV=1
Length = 872
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 25/95 (26%)
Query: 135 YQQGVCVP------TFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGG 188
+++ C P T E HP I A+ + ++PN T++
Sbjct: 569 HERNYCRPLVDDGTTLFISEGRHPVIEAMHQ-------GERFVPNDTLLD---------- 611
Query: 189 EGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
N + ++++TGPNM GKST MRQ+ LIT++AQM
Sbjct: 612 --NGENQLIIITGPNMAGKSTFMRQVALITLMAQM 644
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,576,996
Number of Sequences: 539616
Number of extensions: 3786952
Number of successful extensions: 11100
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10265
Number of HSP's gapped (non-prelim): 832
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)