Query psy13262
Match_columns 229
No_of_seqs 200 out of 2650
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:17:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 99.9 7E-28 1.5E-32 235.4 11.0 167 45-229 181-362 (782)
2 TIGR01069 mutS2 MutS2 family p 99.9 1.9E-25 4E-30 218.0 10.6 167 45-229 176-357 (771)
3 TIGR01070 mutS1 DNA mismatch r 99.9 1.9E-23 4.2E-28 205.4 9.4 153 58-228 456-626 (840)
4 KOG4000|consensus 99.9 6.4E-22 1.4E-26 164.4 7.6 129 1-129 1-134 (291)
5 PF10240 DUF2464: Protein of u 99.9 1.4E-22 3E-27 173.5 3.8 114 14-129 1-115 (251)
6 PRK05399 DNA mismatch repair p 99.9 1.1E-21 2.4E-26 193.7 8.6 152 59-228 471-641 (854)
7 COG0249 MutS Mismatch repair A 99.8 9.3E-22 2E-26 192.6 7.4 96 116-228 540-641 (843)
8 COG1193 Mismatch repair ATPase 99.8 4.7E-21 1E-25 185.3 7.1 165 45-229 173-352 (753)
9 PF00488 MutS_V: MutS domain V 99.8 5.6E-20 1.2E-24 157.0 5.8 74 139-228 1-77 (235)
10 KOG0218|consensus 99.8 1.7E-19 3.7E-24 169.2 4.5 97 117-228 762-864 (1070)
11 KOG0219|consensus 99.8 2.3E-19 5E-24 170.3 3.7 127 86-228 540-679 (902)
12 KOG0220|consensus 99.7 6.4E-17 1.4E-21 152.0 6.3 90 120-228 560-655 (867)
13 KOG0217|consensus 99.6 7.1E-16 1.5E-20 149.5 6.8 99 119-228 826-933 (1125)
14 cd03281 ABC_MSH5_euk MutS5 hom 99.6 1.9E-15 4.2E-20 127.2 6.1 60 156-228 2-63 (213)
15 KOG0221|consensus 99.6 1.2E-16 2.6E-21 148.2 -3.4 92 121-228 536-633 (849)
16 cd03280 ABC_MutS2 MutS2 homolo 99.6 6.8E-15 1.5E-19 122.5 6.8 59 157-228 3-62 (200)
17 cd03285 ABC_MSH2_euk MutS2 hom 99.5 8.6E-15 1.9E-19 124.1 6.1 60 157-228 3-64 (222)
18 cd03283 ABC_MutS-like MutS-lik 99.5 1.3E-14 2.9E-19 120.9 6.0 58 156-228 2-59 (199)
19 cd03286 ABC_MSH6_euk MutS6 hom 99.5 1.5E-14 3.2E-19 122.3 5.9 60 157-228 3-64 (218)
20 cd03284 ABC_MutS1 MutS1 homolo 99.5 1.4E-14 3E-19 122.3 5.5 60 156-228 2-64 (216)
21 cd03243 ABC_MutS_homologs The 99.5 4.3E-14 9.3E-19 117.7 6.1 59 156-228 2-63 (202)
22 cd03282 ABC_MSH4_euk MutS4 hom 99.5 6.3E-14 1.4E-18 117.3 6.1 60 157-228 3-63 (204)
23 cd03287 ABC_MSH3_euk MutS3 hom 99.4 9.6E-14 2.1E-18 117.7 5.5 62 155-228 2-65 (222)
24 COG0488 Uup ATPase components 99.4 2E-13 4.3E-18 128.7 3.7 169 28-214 170-368 (530)
25 KOG0927|consensus 99.1 3E-11 6.5E-16 112.0 2.4 158 42-217 253-440 (614)
26 cd03227 ABC_Class2 ABC-type Cl 99.1 1.9E-10 4.1E-15 92.6 5.5 51 159-228 5-65 (162)
27 PRK10636 putative ABC transpor 99.0 3.6E-10 7.9E-15 109.3 5.1 167 29-215 167-359 (638)
28 COG1119 ModF ABC-type molybden 98.9 1.4E-09 3.1E-14 92.5 5.9 50 151-215 29-78 (257)
29 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 1.3E-09 2.8E-14 93.7 4.8 51 152-217 3-54 (254)
30 PRK11147 ABC transporter ATPas 98.9 1.7E-09 3.6E-14 104.7 5.4 167 29-215 174-366 (635)
31 COG1120 FepC ABC-type cobalami 98.9 2.8E-09 6E-14 92.0 5.8 41 168-215 9-49 (258)
32 PRK14242 phosphate transporter 98.8 1E-08 2.2E-13 87.9 6.2 51 151-216 4-54 (253)
33 PRK10247 putative ABC transpor 98.8 1.4E-08 3E-13 85.8 6.1 51 151-216 5-55 (225)
34 KOG0066|consensus 98.7 4E-09 8.7E-14 96.4 2.6 156 41-214 443-633 (807)
35 PRK14237 phosphate transporter 98.7 2.7E-08 5.8E-13 86.3 6.9 50 152-216 19-68 (267)
36 PRK13543 cytochrome c biogenes 98.7 2.4E-08 5.2E-13 83.7 6.0 50 152-216 10-59 (214)
37 PRK14248 phosphate ABC transpo 98.7 2.5E-08 5.4E-13 86.5 6.2 51 151-216 19-69 (268)
38 PRK11831 putative ABC transpor 98.7 2.6E-08 5.5E-13 86.5 6.1 50 152-216 6-55 (269)
39 TIGR02323 CP_lyasePhnK phospho 98.7 2.4E-08 5.2E-13 85.7 5.8 50 152-216 2-51 (253)
40 TIGR03411 urea_trans_UrtD urea 98.7 2.4E-08 5.2E-13 85.0 5.7 41 169-216 10-50 (242)
41 cd03265 ABC_DrrA DrrA is the A 98.7 2.2E-08 4.7E-13 84.2 5.1 40 170-216 9-48 (220)
42 PRK13539 cytochrome c biogenes 98.7 2.9E-08 6.3E-13 82.8 5.8 41 169-216 10-50 (207)
43 cd03259 ABC_Carb_Solutes_like 98.7 2.3E-08 5E-13 83.5 5.1 38 171-215 10-47 (213)
44 COG1126 GlnQ ABC-type polar am 98.7 2.7E-08 5.8E-13 83.5 5.3 42 168-216 9-50 (240)
45 TIGR01978 sufC FeS assembly AT 98.7 2.4E-08 5.1E-13 85.0 5.1 40 170-216 9-48 (243)
46 TIGR01288 nodI ATP-binding ABC 98.7 3.1E-08 6.6E-13 87.6 6.0 49 152-215 3-51 (303)
47 PRK14259 phosphate ABC transpo 98.7 3.4E-08 7.3E-13 85.8 6.1 50 152-216 12-61 (269)
48 cd03296 ABC_CysA_sulfate_impor 98.7 3E-08 6.6E-13 84.4 5.7 41 169-216 10-50 (239)
49 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 2.3E-08 5E-13 83.7 4.9 35 174-215 17-51 (218)
50 PRK14267 phosphate ABC transpo 98.7 3.1E-08 6.7E-13 85.0 5.8 41 169-216 12-52 (253)
51 PRK14274 phosphate ABC transpo 98.7 3.4E-08 7.5E-13 85.1 6.1 51 152-217 11-61 (259)
52 PRK14239 phosphate transporter 98.7 3.2E-08 6.9E-13 84.8 5.8 49 152-215 4-52 (252)
53 cd03269 ABC_putative_ATPase Th 98.7 2.5E-08 5.5E-13 83.1 5.0 39 171-216 10-48 (210)
54 PRK10744 pstB phosphate transp 98.7 3.4E-08 7.5E-13 85.2 6.0 50 152-216 12-61 (260)
55 cd03261 ABC_Org_Solvent_Resist 98.7 2.4E-08 5.2E-13 84.7 4.9 39 170-215 9-47 (235)
56 cd03257 ABC_NikE_OppD_transpor 98.7 2.7E-08 5.9E-13 83.7 5.2 35 175-216 19-53 (228)
57 PRK09984 phosphonate/organopho 98.7 3.3E-08 7.2E-13 85.3 5.9 50 152-216 3-52 (262)
58 cd03262 ABC_HisP_GlnQ_permease 98.7 2.8E-08 6E-13 82.9 5.2 40 170-216 9-48 (213)
59 PRK14273 phosphate ABC transpo 98.7 3.9E-08 8.4E-13 84.5 6.2 50 152-216 6-55 (254)
60 PRK14247 phosphate ABC transpo 98.7 3.4E-08 7.4E-13 84.5 5.8 40 170-216 12-51 (250)
61 cd03301 ABC_MalK_N The N-termi 98.7 2.6E-08 5.7E-13 83.1 5.0 40 170-216 9-48 (213)
62 PRK11629 lolD lipoprotein tran 98.7 3.3E-08 7.3E-13 83.8 5.7 35 174-215 22-56 (233)
63 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 3.3E-08 7.1E-13 84.0 5.6 40 170-216 10-49 (236)
64 PRK14243 phosphate transporter 98.7 4.2E-08 9.2E-13 84.9 6.4 51 151-216 8-58 (264)
65 cd03258 ABC_MetN_methionine_tr 98.7 3.1E-08 6.7E-13 83.9 5.4 35 175-216 19-53 (233)
66 PRK14255 phosphate ABC transpo 98.7 3.9E-08 8.4E-13 84.3 6.1 50 152-216 4-53 (252)
67 cd03293 ABC_NrtD_SsuB_transpor 98.7 2.6E-08 5.7E-13 83.7 4.9 36 174-216 17-52 (220)
68 COG0410 LivF ABC-type branched 98.7 2.9E-08 6.3E-13 83.8 5.1 41 168-215 10-50 (237)
69 cd03266 ABC_NatA_sodium_export 98.7 2.9E-08 6.2E-13 83.2 5.1 35 175-216 19-53 (218)
70 PRK11247 ssuB aliphatic sulfon 98.7 3E-08 6.5E-13 85.8 5.4 49 152-215 11-59 (257)
71 PRK11264 putative amino-acid A 98.7 3.8E-08 8.2E-13 84.2 5.9 40 170-216 12-51 (250)
72 PRK09544 znuC high-affinity zi 98.7 3.4E-08 7.4E-13 85.1 5.6 41 169-216 12-52 (251)
73 PRK14270 phosphate ABC transpo 98.7 3.9E-08 8.4E-13 84.3 5.9 50 152-216 3-52 (251)
74 PRK14245 phosphate ABC transpo 98.7 3.7E-08 8E-13 84.4 5.8 41 169-216 11-51 (250)
75 PRK13536 nodulation factor exp 98.7 3.6E-08 7.9E-13 88.6 6.0 49 152-215 40-88 (340)
76 PRK11248 tauB taurine transpor 98.7 3.1E-08 6.7E-13 85.4 5.3 39 170-215 10-48 (255)
77 cd03216 ABC_Carb_Monos_I This 98.7 3.1E-08 6.6E-13 79.8 4.9 40 170-216 9-48 (163)
78 TIGR03410 urea_trans_UrtE urea 98.7 2.9E-08 6.3E-13 83.9 5.0 39 170-215 9-47 (230)
79 PRK14271 phosphate ABC transpo 98.7 4.3E-08 9.2E-13 85.6 6.2 51 150-215 18-68 (276)
80 PRK14265 phosphate ABC transpo 98.7 4.3E-08 9.3E-13 85.4 6.1 50 151-215 18-67 (274)
81 cd03268 ABC_BcrA_bacitracin_re 98.7 3E-08 6.6E-13 82.5 5.0 39 171-216 10-48 (208)
82 PRK11300 livG leucine/isoleuci 98.7 4E-08 8.6E-13 84.3 5.8 50 152-216 4-53 (255)
83 cd03263 ABC_subfamily_A The AB 98.7 2.9E-08 6.3E-13 83.3 4.9 39 171-216 10-50 (220)
84 PRK13537 nodulation ABC transp 98.6 3.9E-08 8.5E-13 87.1 5.9 49 152-215 6-54 (306)
85 PRK10584 putative ABC transpor 98.6 4.3E-08 9.4E-13 82.7 5.9 35 175-216 24-58 (228)
86 PRK14261 phosphate ABC transpo 98.6 4E-08 8.6E-13 84.3 5.7 50 152-216 5-54 (253)
87 PRK14268 phosphate ABC transpo 98.6 3.9E-08 8.5E-13 84.8 5.7 50 152-216 11-60 (258)
88 cd03229 ABC_Class3 This class 98.6 3.4E-08 7.3E-13 80.5 5.0 38 171-215 10-47 (178)
89 PRK14262 phosphate ABC transpo 98.6 3.8E-08 8.3E-13 84.2 5.6 41 169-216 11-51 (250)
90 PRK11614 livF leucine/isoleuci 98.6 3.5E-08 7.5E-13 83.9 5.2 39 170-215 14-52 (237)
91 cd03218 ABC_YhbG The ABC trans 98.6 3.4E-08 7.3E-13 83.5 5.2 38 171-215 10-47 (232)
92 PRK10895 lipopolysaccharide AB 98.6 4.5E-08 9.8E-13 83.3 5.9 40 170-216 12-51 (241)
93 TIGR01189 ccmA heme ABC export 98.6 3.5E-08 7.5E-13 81.7 5.0 39 170-215 9-47 (198)
94 TIGR02211 LolD_lipo_ex lipopro 98.6 3.9E-08 8.4E-13 82.6 5.4 36 174-216 18-53 (221)
95 cd03219 ABC_Mj1267_LivG_branch 98.6 3.4E-08 7.4E-13 83.7 5.0 38 171-215 10-47 (236)
96 PRK14253 phosphate ABC transpo 98.6 5.2E-08 1.1E-12 83.4 6.2 41 169-216 11-51 (249)
97 PRK13538 cytochrome c biogenes 98.6 4.5E-08 9.7E-13 81.4 5.6 39 170-215 10-48 (204)
98 cd03224 ABC_TM1139_LivF_branch 98.6 3.1E-08 6.7E-13 83.1 4.6 39 171-216 10-48 (222)
99 PRK13540 cytochrome c biogenes 98.6 4.3E-08 9.4E-13 81.3 5.4 40 170-216 10-49 (200)
100 cd03232 ABC_PDR_domain2 The pl 98.6 4.8E-08 1E-12 80.6 5.6 36 174-216 20-55 (192)
101 cd03260 ABC_PstB_phosphate_tra 98.6 3.3E-08 7.2E-13 83.4 4.8 40 171-217 10-49 (227)
102 TIGR02673 FtsE cell division A 98.6 4.3E-08 9.4E-13 81.9 5.4 37 173-216 14-50 (214)
103 PRK14241 phosphate transporter 98.6 4.5E-08 9.8E-13 84.3 5.6 40 170-216 13-52 (258)
104 TIGR00960 3a0501s02 Type II (G 98.6 4.2E-08 9E-13 82.2 5.3 35 175-216 17-51 (216)
105 TIGR02315 ABC_phnC phosphonate 98.6 3.7E-08 8.1E-13 83.8 5.0 37 173-216 14-50 (243)
106 cd03230 ABC_DR_subfamily_A Thi 98.6 3.9E-08 8.6E-13 79.8 4.9 39 171-216 10-48 (173)
107 PRK14251 phosphate ABC transpo 98.6 5E-08 1.1E-12 83.6 5.8 41 170-217 13-53 (251)
108 PRK10575 iron-hydroxamate tran 98.6 5.5E-08 1.2E-12 84.2 6.1 49 152-215 10-58 (265)
109 COG3839 MalK ABC-type sugar tr 98.6 4.1E-08 9E-13 87.8 5.4 42 168-216 10-51 (338)
110 PRK14235 phosphate transporter 98.6 5.5E-08 1.2E-12 84.4 5.9 50 152-216 18-67 (267)
111 CHL00131 ycf16 sulfate ABC tra 98.6 5.7E-08 1.2E-12 83.2 6.0 50 152-216 6-55 (252)
112 PRK14275 phosphate ABC transpo 98.6 6.3E-08 1.4E-12 84.9 6.3 52 150-216 36-87 (286)
113 PRK09493 glnQ glutamine ABC tr 98.6 5E-08 1.1E-12 83.0 5.5 40 170-216 10-49 (240)
114 cd03226 ABC_cobalt_CbiO_domain 98.6 3.6E-08 7.9E-13 81.9 4.4 39 171-216 9-48 (205)
115 PRK11701 phnK phosphonate C-P 98.6 5.5E-08 1.2E-12 83.8 5.6 49 153-216 6-54 (258)
116 PRK14272 phosphate ABC transpo 98.6 6.8E-08 1.5E-12 82.7 6.0 41 169-216 12-52 (252)
117 PRK14256 phosphate ABC transpo 98.6 6.7E-08 1.5E-12 82.9 6.0 40 170-216 13-52 (252)
118 cd03235 ABC_Metallic_Cations A 98.6 4.5E-08 9.7E-13 81.8 4.8 38 171-215 9-46 (213)
119 PRK14254 phosphate ABC transpo 98.6 6.5E-08 1.4E-12 84.9 5.9 51 151-216 37-87 (285)
120 COG4619 ABC-type uncharacteriz 98.6 4E-08 8.7E-13 79.7 4.1 39 172-217 14-52 (223)
121 cd03225 ABC_cobalt_CbiO_domain 98.6 4.5E-08 9.7E-13 81.6 4.6 36 174-216 14-49 (211)
122 cd03256 ABC_PhnC_transporter A 98.6 4.8E-08 1E-12 83.0 4.9 39 171-216 10-49 (241)
123 PRK13547 hmuV hemin importer A 98.6 5.6E-08 1.2E-12 84.8 5.4 39 170-215 10-48 (272)
124 cd03292 ABC_FtsE_transporter F 98.6 4.7E-08 1E-12 81.6 4.7 39 171-216 10-49 (214)
125 PRK10908 cell division protein 98.6 6E-08 1.3E-12 81.6 5.4 38 172-216 13-50 (222)
126 PRK13548 hmuV hemin importer A 98.6 6.3E-08 1.4E-12 83.6 5.6 41 169-216 10-50 (258)
127 COG4559 ABC-type hemin transpo 98.6 4.8E-08 1E-12 81.8 4.6 40 169-215 9-48 (259)
128 PRK11124 artP arginine transpo 98.6 6.8E-08 1.5E-12 82.3 5.7 40 170-216 11-50 (242)
129 TIGR03005 ectoine_ehuA ectoine 98.6 5.1E-08 1.1E-12 83.6 4.8 40 170-216 9-48 (252)
130 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.6 5.5E-08 1.2E-12 76.9 4.5 38 171-215 10-47 (144)
131 COG1131 CcmA ABC-type multidru 98.6 7E-08 1.5E-12 85.1 5.7 41 168-215 11-52 (293)
132 PRK10419 nikE nickel transport 98.6 7.4E-08 1.6E-12 83.6 5.7 37 173-216 24-60 (268)
133 TIGR00972 3a0107s01c2 phosphat 98.6 7.1E-08 1.5E-12 82.5 5.5 39 170-215 10-48 (247)
134 PRK14250 phosphate ABC transpo 98.6 7.1E-08 1.5E-12 82.3 5.5 39 171-216 13-51 (241)
135 PRK14249 phosphate ABC transpo 98.6 8.4E-08 1.8E-12 82.2 5.9 40 170-216 13-52 (251)
136 PRK09580 sufC cysteine desulfu 98.6 6.1E-08 1.3E-12 82.8 5.0 41 170-217 10-50 (248)
137 PRK14264 phosphate ABC transpo 98.6 8.7E-08 1.9E-12 84.8 6.1 50 152-216 44-93 (305)
138 PRK09536 btuD corrinoid ABC tr 98.6 6.7E-08 1.5E-12 88.8 5.5 41 168-215 10-50 (402)
139 PRK14269 phosphate ABC transpo 98.6 7.5E-08 1.6E-12 82.4 5.5 41 169-216 10-50 (246)
140 PRK14252 phosphate ABC transpo 98.6 8.4E-08 1.8E-12 83.0 5.8 50 152-216 15-64 (265)
141 PRK11231 fecE iron-dicitrate t 98.6 8.2E-08 1.8E-12 82.5 5.7 40 170-216 11-50 (255)
142 PRK13638 cbiO cobalt transport 98.6 5.2E-08 1.1E-12 84.6 4.5 39 171-216 11-49 (271)
143 cd03231 ABC_CcmA_heme_exporter 98.6 6.9E-08 1.5E-12 80.2 5.0 39 170-215 9-47 (201)
144 PRK10253 iron-enterobactin tra 98.6 8E-08 1.7E-12 83.2 5.6 41 168-215 14-54 (265)
145 PRK14246 phosphate ABC transpo 98.6 6.7E-08 1.5E-12 83.4 5.0 50 151-215 8-57 (257)
146 COG3842 PotA ABC-type spermidi 98.6 8.2E-08 1.8E-12 86.4 5.7 50 152-216 4-53 (352)
147 COG4133 CcmA ABC-type transpor 98.6 5.2E-08 1.1E-12 80.1 4.1 37 172-215 13-49 (209)
148 PRK10619 histidine/lysine/argi 98.6 8.9E-08 1.9E-12 82.4 5.8 42 168-216 12-53 (257)
149 PRK14238 phosphate transporter 98.6 7.7E-08 1.7E-12 83.7 5.4 50 152-216 23-72 (271)
150 cd03228 ABCC_MRP_Like The MRP 98.6 5.9E-08 1.3E-12 78.6 4.3 35 175-216 16-50 (171)
151 COG1127 Ttg2A ABC-type transpo 98.6 7.2E-08 1.6E-12 82.0 4.9 50 151-215 6-55 (263)
152 cd03213 ABCG_EPDR ABCG transpo 98.6 8.3E-08 1.8E-12 79.4 5.3 36 174-216 22-57 (194)
153 PRK14240 phosphate transporter 98.6 8.3E-08 1.8E-12 82.2 5.4 40 170-216 12-51 (250)
154 PRK14260 phosphate ABC transpo 98.6 1E-07 2.2E-12 82.2 6.0 41 169-216 15-55 (259)
155 cd03250 ABCC_MRP_domain1 Domai 98.6 6.3E-08 1.4E-12 80.4 4.5 35 175-216 19-53 (204)
156 cd03247 ABCC_cytochrome_bd The 98.6 5.8E-08 1.3E-12 79.1 4.2 35 175-216 16-50 (178)
157 TIGR03522 GldA_ABC_ATP gliding 98.6 8.8E-08 1.9E-12 84.6 5.6 41 169-216 10-50 (301)
158 PRK14258 phosphate ABC transpo 98.6 1E-07 2.2E-12 82.4 5.7 40 170-216 16-55 (261)
159 TIGR00968 3a0106s01 sulfate AB 98.6 7.8E-08 1.7E-12 81.9 4.9 40 170-216 9-48 (237)
160 cd03217 ABC_FeS_Assembly ABC-t 98.6 8.7E-08 1.9E-12 79.6 5.1 40 171-217 10-49 (200)
161 TIGR03873 F420-0_ABC_ATP propo 98.6 8.3E-08 1.8E-12 82.6 5.1 39 170-215 10-48 (256)
162 cd03295 ABC_OpuCA_Osmoprotecti 98.5 7.7E-08 1.7E-12 82.0 4.8 39 171-216 10-49 (242)
163 PRK11432 fbpC ferric transport 98.5 1.1E-07 2.3E-12 86.0 5.9 51 151-216 4-54 (351)
164 cd03223 ABCD_peroxisomal_ALDP 98.5 8.8E-08 1.9E-12 77.4 4.8 36 174-216 14-49 (166)
165 TIGR03740 galliderm_ABC gallid 98.5 9.2E-08 2E-12 80.5 5.1 40 170-216 9-48 (223)
166 COG1116 TauB ABC-type nitrate/ 98.5 1.3E-07 2.9E-12 80.7 6.0 42 168-216 10-51 (248)
167 cd03215 ABC_Carb_Monos_II This 98.5 1.2E-07 2.7E-12 77.4 5.6 34 176-216 15-48 (182)
168 PRK14263 phosphate ABC transpo 98.5 1.3E-07 2.8E-12 81.9 5.9 41 168-215 15-55 (261)
169 PRK14236 phosphate transporter 98.5 1.4E-07 3E-12 82.1 6.1 50 152-216 24-73 (272)
170 cd03214 ABC_Iron-Siderophores_ 98.5 9.8E-08 2.1E-12 77.9 4.8 38 171-215 9-46 (180)
171 PF00005 ABC_tran: ABC transpo 98.5 5.5E-08 1.2E-12 75.3 3.2 32 177-215 1-32 (137)
172 TIGR02324 CP_lyasePhnL phospho 98.5 1.2E-07 2.5E-12 79.9 5.4 36 174-216 21-56 (224)
173 PRK15112 antimicrobial peptide 98.5 1.1E-07 2.5E-12 82.4 5.5 35 175-216 27-61 (267)
174 cd03234 ABCG_White The White s 98.5 9E-08 2E-12 80.8 4.7 35 175-216 21-55 (226)
175 PRK13648 cbiO cobalt transport 98.5 9.8E-08 2.1E-12 82.8 4.9 50 152-216 6-57 (269)
176 cd03300 ABC_PotA_N PotA is an 98.5 1.1E-07 2.5E-12 80.5 5.2 40 170-216 9-48 (232)
177 PRK11819 putative ABC transpor 98.5 1.1E-07 2.5E-12 90.6 5.7 50 152-216 5-55 (556)
178 PRK14266 phosphate ABC transpo 98.5 1.4E-07 3.1E-12 80.7 5.7 40 170-216 12-51 (250)
179 cd03233 ABC_PDR_domain1 The pl 98.5 1.3E-07 2.8E-12 78.8 5.1 37 173-216 19-55 (202)
180 PRK11000 maltose/maltodextrin 98.5 1.4E-07 3.1E-12 85.7 5.7 41 169-216 11-51 (369)
181 PRK13647 cbiO cobalt transport 98.5 1.3E-07 2.9E-12 82.4 5.3 39 170-215 13-52 (274)
182 PRK15056 manganese/iron transp 98.5 1.4E-07 2.9E-12 82.1 5.4 39 170-215 15-54 (272)
183 cd03254 ABCC_Glucan_exporter_l 98.5 1.2E-07 2.6E-12 80.0 4.8 35 175-216 17-51 (229)
184 cd03248 ABCC_TAP TAP, the Tran 98.5 1.4E-07 3E-12 79.6 5.2 35 175-216 28-62 (226)
185 PRK10938 putative molybdenum t 98.5 1.5E-07 3.3E-12 88.2 5.9 41 169-216 268-308 (490)
186 cd03267 ABC_NatA_like Similar 98.5 1.1E-07 2.3E-12 81.0 4.5 37 172-215 32-68 (236)
187 cd03251 ABCC_MsbA MsbA is an e 98.5 1.1E-07 2.3E-12 80.6 4.4 35 175-216 16-50 (234)
188 PRK13645 cbiO cobalt transport 98.5 1.4E-07 3.1E-12 82.7 5.3 35 175-216 25-59 (289)
189 PRK10762 D-ribose transporter 98.5 1.4E-07 3E-12 88.8 5.6 50 152-216 3-52 (501)
190 PRK13541 cytochrome c biogenes 98.5 1.5E-07 3.3E-12 77.7 5.2 38 171-216 11-48 (195)
191 PRK13549 xylose transporter AT 98.5 1.5E-07 3.2E-12 88.7 5.8 50 152-216 4-53 (506)
192 TIGR03265 PhnT2 putative 2-ami 98.5 1.5E-07 3.3E-12 85.0 5.6 42 168-216 11-52 (353)
193 PRK13632 cbiO cobalt transport 98.5 1.4E-07 3.1E-12 81.9 5.1 36 174-216 22-57 (271)
194 TIGR02769 nickel_nikE nickel i 98.5 1.8E-07 4E-12 80.9 5.7 36 174-216 24-59 (265)
195 PRK10636 putative ABC transpor 98.5 1.4E-07 2.9E-12 91.5 5.3 42 168-216 8-49 (638)
196 PRK14244 phosphate ABC transpo 98.5 1.7E-07 3.7E-12 80.3 5.4 40 171-217 15-54 (251)
197 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 1.2E-07 2.6E-12 80.2 4.4 39 170-215 31-69 (224)
198 PRK13635 cbiO cobalt transport 98.5 1.5E-07 3.2E-12 82.3 5.1 35 174-215 20-54 (279)
199 cd03245 ABCC_bacteriocin_expor 98.5 1.5E-07 3.2E-12 79.0 4.8 36 174-216 17-52 (220)
200 PRK13652 cbiO cobalt transport 98.5 1.6E-07 3.4E-12 82.0 5.2 37 173-216 16-52 (277)
201 cd03246 ABCC_Protease_Secretio 98.5 1.3E-07 2.7E-12 76.8 4.2 36 174-216 15-50 (173)
202 PRK09700 D-allose transporter 98.5 1.5E-07 3.3E-12 88.7 5.4 49 152-215 4-52 (510)
203 TIGR02982 heterocyst_DevA ABC 98.5 1.9E-07 4.1E-12 78.5 5.3 36 174-216 18-53 (220)
204 cd03244 ABCC_MRP_domain2 Domai 98.5 1.7E-07 3.6E-12 78.7 4.8 35 175-216 18-52 (221)
205 PRK11153 metN DL-methionine tr 98.5 1.8E-07 3.8E-12 84.2 5.3 36 174-216 18-53 (343)
206 PRK09452 potA putrescine/sperm 98.5 2E-07 4.4E-12 84.9 5.7 50 152-216 13-62 (375)
207 PRK13639 cbiO cobalt transport 98.5 1.7E-07 3.7E-12 81.6 5.0 36 174-216 15-50 (275)
208 PRK13640 cbiO cobalt transport 98.5 1.9E-07 4.1E-12 81.7 5.2 35 175-216 21-55 (282)
209 cd03264 ABC_drug_resistance_li 98.5 1.7E-07 3.7E-12 78.1 4.8 37 171-215 10-46 (211)
210 PRK15439 autoinducer 2 ABC tra 98.5 2E-07 4.4E-12 88.0 5.6 49 152-215 10-58 (510)
211 PRK11147 ABC transporter ATPas 98.5 1.9E-07 4.2E-12 90.4 5.6 42 168-216 10-51 (635)
212 PRK13649 cbiO cobalt transport 98.5 1.8E-07 3.8E-12 81.6 4.8 34 175-215 21-54 (280)
213 COG1122 CbiO ABC-type cobalt t 98.5 1.5E-07 3.3E-12 80.4 4.3 39 170-215 12-51 (235)
214 PRK13636 cbiO cobalt transport 98.5 2.3E-07 5E-12 81.2 5.5 50 152-216 4-54 (283)
215 PRK13644 cbiO cobalt transport 98.5 1.6E-07 3.4E-12 81.9 4.4 35 174-215 15-49 (274)
216 cd03253 ABCC_ATM1_transporter 98.5 1.7E-07 3.6E-12 79.5 4.4 36 174-216 14-49 (236)
217 PRK10851 sulfate/thiosulfate t 98.5 2.1E-07 4.6E-12 84.1 5.4 41 169-216 10-50 (353)
218 cd03369 ABCC_NFT1 Domain 2 of 98.5 2.5E-07 5.4E-12 77.0 5.4 35 175-216 22-56 (207)
219 cd03294 ABC_Pro_Gly_Bertaine T 98.5 1.6E-07 3.5E-12 81.5 4.4 40 170-216 33-72 (269)
220 PRK11650 ugpC glycerol-3-phosp 98.5 2.5E-07 5.4E-12 83.7 5.7 38 172-216 15-52 (356)
221 PRK15064 ABC transporter ATP-b 98.5 2.4E-07 5.2E-12 87.8 5.8 49 152-215 318-366 (530)
222 PRK10938 putative molybdenum t 98.4 2.2E-07 4.7E-12 87.2 5.4 40 170-216 12-51 (490)
223 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 2.5E-07 5.4E-12 88.2 5.8 50 151-215 320-369 (552)
224 PRK15064 ABC transporter ATP-b 98.4 2.3E-07 5E-12 87.9 5.5 39 170-215 10-48 (530)
225 PRK13633 cobalt transporter AT 98.4 2.6E-07 5.6E-12 80.7 5.4 35 174-215 23-57 (280)
226 PRK11288 araG L-arabinose tran 98.4 2.6E-07 5.6E-12 87.0 5.7 49 152-215 3-51 (501)
227 PRK11607 potG putrescine trans 98.4 2.9E-07 6.2E-12 84.0 5.8 51 151-216 17-67 (377)
228 PRK10418 nikD nickel transport 98.4 2.8E-07 6.1E-12 79.2 5.4 37 173-216 15-51 (254)
229 PRK13641 cbiO cobalt transport 98.4 2.2E-07 4.9E-12 81.4 4.9 35 175-216 21-55 (287)
230 PRK13637 cbiO cobalt transport 98.4 2.3E-07 5.1E-12 81.4 5.0 34 175-215 21-54 (287)
231 PRK13650 cbiO cobalt transport 98.4 2.6E-07 5.7E-12 80.7 5.3 35 175-216 21-55 (279)
232 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 2E-07 4.3E-12 79.1 4.4 35 175-216 17-51 (238)
233 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 2.6E-07 5.7E-12 88.0 5.6 49 152-215 3-52 (552)
234 cd00267 ABC_ATPase ABC (ATP-bi 98.4 2.4E-07 5.3E-12 73.8 4.5 39 171-216 9-47 (157)
235 COG1136 SalX ABC-type antimicr 98.4 2.4E-07 5.1E-12 78.6 4.7 36 175-217 19-54 (226)
236 PRK13634 cbiO cobalt transport 98.4 2.3E-07 4.9E-12 81.6 4.7 36 174-216 20-55 (290)
237 TIGR03258 PhnT 2-aminoethylpho 98.4 2.8E-07 6.1E-12 83.6 5.5 41 169-216 13-53 (362)
238 COG3638 ABC-type phosphate/pho 98.4 2.9E-07 6.4E-12 78.1 5.1 49 152-215 2-51 (258)
239 PRK11819 putative ABC transpor 98.4 3E-07 6.6E-12 87.7 5.9 49 152-215 323-371 (556)
240 PRK15093 antimicrobial peptide 98.4 3.6E-07 7.8E-12 81.8 5.9 36 174-216 20-55 (330)
241 PRK13651 cobalt transporter AT 98.4 2.7E-07 5.9E-12 81.7 5.0 35 175-216 21-55 (305)
242 cd03252 ABCC_Hemolysin The ABC 98.4 2.5E-07 5.5E-12 78.5 4.3 35 174-215 15-49 (237)
243 cd03290 ABCC_SUR1_N The SUR do 98.4 2.4E-07 5.2E-12 77.7 4.1 37 173-216 13-49 (218)
244 TIGR02633 xylG D-xylose ABC tr 98.4 3.3E-07 7.1E-12 86.2 5.3 40 170-216 10-49 (500)
245 COG4604 CeuD ABC-type enteroch 98.4 3E-07 6.5E-12 76.4 4.4 42 168-216 8-49 (252)
246 TIGR03269 met_CoM_red_A2 methy 98.4 3.1E-07 6.7E-12 86.8 5.0 40 171-217 10-49 (520)
247 PRK13631 cbiO cobalt transport 98.4 4.4E-07 9.6E-12 81.0 5.7 50 151-215 19-73 (320)
248 PRK13646 cbiO cobalt transport 98.4 3.6E-07 7.8E-12 80.1 5.1 35 175-216 21-55 (286)
249 PRK15079 oligopeptide ABC tran 98.4 5.3E-07 1.1E-11 80.9 6.2 35 174-215 34-68 (331)
250 PRK11022 dppD dipeptide transp 98.4 4.6E-07 9.9E-12 81.0 5.8 34 175-215 21-54 (326)
251 TIGR02314 ABC_MetN D-methionin 98.4 4E-07 8.7E-12 82.0 5.4 35 175-216 19-53 (343)
252 COG1134 TagH ABC-type polysacc 98.4 3.2E-07 7E-12 78.1 4.5 39 171-216 37-75 (249)
253 cd03288 ABCC_SUR2 The SUR doma 98.4 3.7E-07 8.1E-12 78.7 4.9 36 174-216 34-69 (257)
254 PRK13643 cbiO cobalt transport 98.4 3.7E-07 8E-12 80.1 4.8 35 175-216 20-54 (288)
255 PRK10771 thiQ thiamine transpo 98.4 3.9E-07 8.4E-12 77.2 4.7 30 179-215 17-46 (232)
256 PRK15134 microcin C ABC transp 98.4 4.7E-07 1E-11 85.8 5.7 36 174-216 22-57 (529)
257 COG1117 PstB ABC-type phosphat 98.4 4.1E-07 8.9E-12 76.4 4.6 49 152-215 6-54 (253)
258 smart00533 MUTSd DNA-binding d 98.4 1.5E-07 3.3E-12 82.5 1.9 103 58-165 189-306 (308)
259 PLN03073 ABC transporter F fam 98.4 5.1E-07 1.1E-11 88.6 5.5 48 153-215 177-224 (718)
260 PRK11308 dppF dipeptide transp 98.4 6.6E-07 1.4E-11 80.1 5.8 35 174-215 28-62 (327)
261 TIGR02633 xylG D-xylose ABC tr 98.3 4.6E-07 1E-11 85.2 5.0 35 174-215 273-307 (500)
262 COG0488 Uup ATPase components 98.3 5.9E-07 1.3E-11 85.1 5.6 41 168-215 10-50 (530)
263 PRK13642 cbiO cobalt transport 98.3 5.8E-07 1.3E-11 78.4 5.1 34 175-215 21-54 (277)
264 PRK13546 teichoic acids export 98.3 4.8E-07 1E-11 78.6 4.5 37 173-216 36-72 (264)
265 COG0411 LivG ABC-type branched 98.3 2.2E-07 4.7E-12 79.2 2.1 40 168-214 11-50 (250)
266 COG2884 FtsE Predicted ATPase 98.3 4.2E-07 9.1E-12 75.0 3.5 42 168-216 8-50 (223)
267 COG0396 sufC Cysteine desulfur 98.3 6.8E-07 1.5E-11 75.7 4.8 40 169-215 11-51 (251)
268 PRK15134 microcin C ABC transp 98.3 6.4E-07 1.4E-11 84.9 5.2 36 174-216 299-334 (529)
269 COG4555 NatA ABC-type Na+ tran 98.3 2.8E-07 6.1E-12 76.7 2.4 41 169-216 10-50 (245)
270 TIGR03269 met_CoM_red_A2 methy 98.3 8.1E-07 1.7E-11 84.0 5.8 35 174-215 297-331 (520)
271 cd03222 ABC_RNaseL_inhibitor T 98.3 8.7E-07 1.9E-11 72.6 5.1 37 171-215 10-46 (177)
272 PRK13549 xylose transporter AT 98.3 6.6E-07 1.4E-11 84.3 5.0 35 174-215 275-309 (506)
273 cd03299 ABC_ModC_like Archeal 98.3 6.5E-07 1.4E-11 76.1 4.4 34 176-216 14-47 (235)
274 KOG0064|consensus 98.3 1.2E-06 2.6E-11 81.9 6.3 39 172-217 493-531 (728)
275 COG1125 OpuBA ABC-type proline 98.3 6.4E-07 1.4E-11 77.0 4.2 40 168-214 8-47 (309)
276 cd03291 ABCC_CFTR1 The CFTR su 98.3 8.1E-07 1.7E-11 78.0 4.9 47 152-215 38-84 (282)
277 COG4152 ABC-type uncharacteriz 98.3 5.1E-07 1.1E-11 77.2 3.4 43 168-217 9-52 (300)
278 PRK09473 oppD oligopeptide tra 98.3 1.2E-06 2.7E-11 78.4 6.1 50 151-215 10-63 (330)
279 PLN03073 ABC transporter F fam 98.3 8.4E-07 1.8E-11 87.1 5.3 49 152-215 507-556 (718)
280 cd03289 ABCC_CFTR2 The CFTR su 98.3 9.5E-07 2.1E-11 77.2 5.0 36 174-216 17-52 (275)
281 PRK10261 glutathione transport 98.3 1E-06 2.2E-11 85.2 5.7 49 152-215 11-63 (623)
282 PRK09700 D-allose transporter 98.3 9.1E-07 2E-11 83.4 4.9 34 175-215 277-310 (510)
283 KOG0062|consensus 98.3 1.3E-07 2.8E-12 87.8 -0.9 152 42-214 230-410 (582)
284 PRK10261 glutathione transport 98.3 1.3E-06 2.7E-11 84.6 5.7 34 175-215 338-371 (623)
285 COG1129 MglA ABC-type sugar tr 98.2 1.5E-06 3.2E-11 81.3 5.5 50 151-215 6-55 (500)
286 PRK14257 phosphate ABC transpo 98.2 1.7E-06 3.7E-11 77.5 5.6 50 152-216 79-130 (329)
287 PRK10070 glycine betaine trans 98.2 1E-06 2.2E-11 81.0 3.9 37 172-215 39-75 (400)
288 cd03237 ABC_RNaseL_inhibitor_d 98.2 1.2E-06 2.7E-11 75.2 4.1 35 174-215 12-46 (246)
289 COG1118 CysA ABC-type sulfate/ 98.2 1.4E-06 3E-11 76.7 4.2 40 169-215 10-49 (345)
290 KOG0057|consensus 98.2 1.7E-06 3.8E-11 80.9 5.0 46 154-214 352-398 (591)
291 TIGR03415 ABC_choXWV_ATP choli 98.2 1.4E-06 3E-11 79.6 4.3 39 170-215 33-71 (382)
292 cd03236 ABC_RNaseL_inhibitor_d 98.2 1.3E-06 2.9E-11 75.5 4.0 35 174-216 14-48 (255)
293 PRK13545 tagH teichoic acids e 98.2 1.9E-06 4.2E-11 81.4 5.3 35 175-216 38-72 (549)
294 COG1124 DppF ABC-type dipeptid 98.2 1.8E-06 3.9E-11 73.6 4.6 42 168-216 10-55 (252)
295 PRK13409 putative ATPase RIL; 98.2 2.7E-06 5.8E-11 81.8 5.8 34 175-215 353-386 (590)
296 cd00820 PEPCK_HprK Phosphoenol 98.2 2.2E-06 4.8E-11 64.6 4.1 34 175-215 3-36 (107)
297 PRK10982 galactose/methyl gala 98.2 2E-06 4.4E-11 80.7 4.6 34 175-215 262-295 (491)
298 TIGR00954 3a01203 Peroxysomal 98.1 2.7E-06 5.8E-11 82.8 5.4 40 170-216 460-500 (659)
299 PRK11288 araG L-arabinose tran 98.1 1.5E-06 3.3E-11 81.8 3.4 34 175-215 267-300 (501)
300 TIGR02868 CydC thiol reductant 98.1 2.4E-06 5.3E-11 80.8 4.6 35 174-215 348-382 (529)
301 COG4615 PvdE ABC-type sideroph 98.1 2.5E-06 5.5E-11 77.4 4.1 50 153-216 322-372 (546)
302 PRK15439 autoinducer 2 ABC tra 98.1 2.2E-06 4.8E-11 80.9 3.5 33 176-215 278-310 (510)
303 PRK10762 D-ribose transporter 98.1 2.6E-06 5.6E-11 80.2 3.7 33 176-215 267-299 (501)
304 PRK13409 putative ATPase RIL; 98.1 3.4E-06 7.4E-11 81.2 4.6 39 169-215 82-120 (590)
305 COG4586 ABC-type uncharacteriz 98.1 1.7E-06 3.7E-11 75.0 2.0 35 176-217 39-74 (325)
306 PRK11174 cysteine/glutathione 98.1 4.1E-06 8.8E-11 80.2 4.7 39 170-215 359-397 (588)
307 PLN03211 ABC transporter G-25; 98.0 3.8E-06 8.1E-11 81.8 4.3 38 171-215 78-115 (659)
308 PRK10522 multidrug transporter 98.0 5.6E-06 1.2E-10 78.8 5.0 38 171-215 332-370 (547)
309 PRK11176 lipid transporter ATP 98.0 5.9E-06 1.3E-10 79.0 4.9 35 174-215 356-390 (582)
310 COG2274 SunT ABC-type bacterio 98.0 6E-06 1.3E-10 80.8 4.6 48 153-214 471-519 (709)
311 KOG0060|consensus 98.0 8.5E-06 1.9E-10 76.8 5.3 51 152-217 432-484 (659)
312 TIGR02857 CydD thiol reductant 98.0 6.9E-06 1.5E-10 77.7 4.7 34 175-215 336-369 (529)
313 PRK10535 macrolide transporter 98.0 9.2E-06 2E-10 79.0 5.7 35 175-216 22-56 (648)
314 TIGR00958 3a01208 Conjugate Tr 98.0 7.4E-06 1.6E-10 80.4 5.0 34 174-214 494-527 (711)
315 TIGR03797 NHPM_micro_ABC2 NHPM 98.0 7.4E-06 1.6E-10 80.0 4.9 35 174-215 466-500 (686)
316 TIGR01193 bacteriocin_ABC ABC- 98.0 6.3E-06 1.4E-10 80.7 4.4 36 173-215 486-521 (708)
317 TIGR01842 type_I_sec_PrtD type 98.0 1.7E-05 3.7E-10 75.4 7.2 35 174-215 331-365 (544)
318 TIGR01192 chvA glucan exporter 98.0 7.2E-06 1.6E-10 78.8 4.5 38 171-215 344-382 (585)
319 PRK13657 cyclic beta-1,2-gluca 98.0 8.8E-06 1.9E-10 78.0 5.1 38 171-215 344-382 (588)
320 PRK11160 cysteine/glutathione 98.0 8.5E-06 1.8E-10 78.1 4.9 34 175-215 354-387 (574)
321 TIGR02203 MsbA_lipidA lipid A 98.0 8.6E-06 1.9E-10 77.6 4.9 35 174-215 345-379 (571)
322 PRK10789 putative multidrug tr 98.0 8.3E-06 1.8E-10 78.0 4.8 35 174-215 328-362 (569)
323 TIGR02204 MsbA_rel ABC transpo 98.0 8.7E-06 1.9E-10 77.7 4.9 35 174-215 353-387 (576)
324 PRK10790 putative multidrug tr 98.0 8.2E-06 1.8E-10 78.3 4.7 34 174-214 354-387 (592)
325 TIGR01194 cyc_pep_trnsptr cycl 97.9 1.1E-05 2.3E-10 77.0 5.3 34 175-215 356-389 (555)
326 PF13555 AAA_29: P-loop contai 97.9 1.4E-05 3E-10 54.3 4.1 23 195-217 24-46 (62)
327 TIGR03796 NHPM_micro_ABC1 NHPM 97.9 9.6E-06 2.1E-10 79.4 4.8 35 174-215 492-526 (710)
328 TIGR03375 type_I_sec_LssB type 97.9 1.1E-05 2.4E-10 78.8 4.9 35 174-215 478-512 (694)
329 COG4778 PhnL ABC-type phosphon 97.9 1.2E-05 2.7E-10 65.6 3.9 33 175-214 25-57 (235)
330 KOG2355|consensus 97.9 1.3E-05 2.9E-10 67.2 4.0 41 169-216 22-62 (291)
331 KOG0062|consensus 97.9 8.6E-06 1.9E-10 75.9 2.9 42 168-216 87-128 (582)
332 COG4107 PhnK ABC-type phosphon 97.9 1.4E-05 3.1E-10 65.5 3.8 50 151-215 4-53 (258)
333 TIGR01257 rim_protein retinal- 97.9 2E-05 4.3E-10 84.8 5.9 40 169-215 1945-1986(2272)
334 COG3845 ABC-type uncharacteriz 97.8 2.6E-05 5.6E-10 72.4 5.6 51 152-217 3-54 (501)
335 KOG0058|consensus 97.8 1.8E-05 3.9E-10 76.4 4.7 36 172-214 479-514 (716)
336 COG1132 MdlB ABC-type multidru 97.8 2E-05 4.4E-10 75.2 4.9 46 154-214 329-375 (567)
337 COG1135 AbcC ABC-type metal io 97.8 2.4E-05 5.2E-10 69.0 4.8 36 174-216 19-54 (339)
338 COG4674 Uncharacterized ABC-ty 97.8 1.1E-05 2.3E-10 67.2 2.4 39 169-214 13-51 (249)
339 TIGR01846 type_I_sec_HlyB type 97.8 2E-05 4.3E-10 77.1 4.5 35 174-215 470-504 (694)
340 COG4988 CydD ABC-type transpor 97.8 5.1E-05 1.1E-09 71.7 6.9 37 171-214 330-367 (559)
341 TIGR01257 rim_protein retinal- 97.8 3E-05 6.5E-10 83.4 5.9 36 173-215 942-977 (2272)
342 TIGR00955 3a01204 The Eye Pigm 97.8 1.8E-05 4E-10 76.5 4.0 37 173-216 37-73 (617)
343 cd03274 ABC_SMC4_euk Eukaryoti 97.8 3E-05 6.4E-10 65.3 4.6 22 195-216 26-47 (212)
344 COG4161 ArtP ABC-type arginine 97.8 3.1E-05 6.7E-10 62.8 4.4 44 168-218 9-52 (242)
345 COG4178 ABC-type uncharacteriz 97.8 3.9E-05 8.4E-10 73.4 5.6 39 172-217 404-442 (604)
346 KOG0056|consensus 97.8 3.6E-05 7.9E-10 71.8 5.1 40 168-214 545-584 (790)
347 TIGR00956 3a01205 Pleiotropic 97.7 3.7E-05 8.1E-10 80.6 5.8 36 174-216 776-811 (1394)
348 COG4987 CydC ABC-type transpor 97.7 3.1E-05 6.7E-10 72.6 4.5 49 153-215 336-385 (573)
349 PTZ00265 multidrug resistance 97.7 3.7E-05 7.9E-10 81.0 5.4 35 175-216 399-433 (1466)
350 TIGR00956 3a01205 Pleiotropic 97.7 2.7E-05 5.9E-10 81.6 4.3 36 174-216 74-109 (1394)
351 COG4525 TauB ABC-type taurine 97.7 2.9E-05 6.3E-10 64.7 3.4 37 174-217 18-54 (259)
352 PLN03140 ABC transporter G fam 97.7 2.8E-05 6E-10 81.8 4.0 36 173-215 177-212 (1470)
353 COG1137 YhbG ABC-type (unclass 97.7 2.3E-05 5.1E-10 65.4 2.7 40 168-214 11-50 (243)
354 COG4598 HisP ABC-type histidin 97.6 4.8E-05 1E-09 62.7 3.8 42 169-217 14-55 (256)
355 COG4181 Predicted ABC-type tra 97.6 6.8E-05 1.5E-09 61.3 4.1 34 175-215 24-57 (228)
356 COG1101 PhnK ABC-type uncharac 97.6 3.5E-05 7.7E-10 65.0 2.4 36 174-216 19-54 (263)
357 PLN03140 ABC transporter G fam 97.6 5.4E-05 1.2E-09 79.6 4.3 36 174-216 893-928 (1470)
358 PTZ00265 multidrug resistance 97.6 6E-05 1.3E-09 79.4 4.5 35 173-214 1180-1214(1466)
359 cd01130 VirB11-like_ATPase Typ 97.6 4.4E-05 9.5E-10 62.7 2.5 21 195-215 26-46 (186)
360 TIGR03238 dnd_assoc_3 dnd syst 97.6 5.1E-05 1.1E-09 70.8 3.2 30 176-212 21-50 (504)
361 COG4138 BtuD ABC-type cobalami 97.5 7.8E-05 1.7E-09 61.2 3.7 38 171-215 9-46 (248)
362 COG4608 AppF ABC-type oligopep 97.5 0.00014 3.1E-09 63.0 5.4 34 175-215 27-60 (268)
363 cd03279 ABC_sbcCD SbcCD and ot 97.5 6.3E-05 1.4E-09 63.0 3.1 21 195-215 29-49 (213)
364 TIGR00957 MRP_assoc_pro multi 97.5 9.2E-05 2E-09 78.4 4.9 35 174-215 651-685 (1522)
365 PTZ00243 ABC transporter; Prov 97.5 7.9E-05 1.7E-09 79.0 4.3 35 174-215 673-707 (1560)
366 TIGR01271 CFTR_protein cystic 97.5 6.8E-05 1.5E-09 79.2 3.8 35 174-215 439-473 (1490)
367 PLN03232 ABC transporter C fam 97.5 9.3E-05 2E-09 78.2 4.6 48 153-214 1234-1282(1495)
368 COG4167 SapF ABC-type antimicr 97.5 9.5E-05 2.1E-09 61.1 3.5 33 176-215 28-60 (267)
369 cd03273 ABC_SMC2_euk Eukaryoti 97.5 0.0001 2.2E-09 63.3 3.8 23 195-217 26-48 (251)
370 COG3840 ThiQ ABC-type thiamine 97.5 9.8E-05 2.1E-09 60.9 3.4 30 180-216 18-47 (231)
371 PLN03130 ABC transporter C fam 97.4 0.00013 2.8E-09 77.6 4.6 48 153-214 1237-1285(1622)
372 PTZ00243 ABC transporter; Prov 97.4 0.00014 2.9E-09 77.2 4.7 33 175-214 1324-1356(1560)
373 KOG0927|consensus 97.4 0.00013 2.9E-09 68.5 4.0 38 171-215 85-122 (614)
374 COG0444 DppD ABC-type dipeptid 97.4 0.00017 3.8E-09 63.8 4.4 33 175-214 19-51 (316)
375 COG1123 ATPase components of v 97.4 0.00023 5E-09 67.3 5.4 34 175-215 305-338 (539)
376 TIGR01271 CFTR_protein cystic 97.4 0.00018 3.8E-09 76.1 4.8 35 174-215 1232-1266(1490)
377 TIGR00957 MRP_assoc_pro multi 97.4 0.00016 3.4E-09 76.6 4.4 34 174-214 1299-1332(1522)
378 PLN03232 ABC transporter C fam 97.4 0.00021 4.5E-09 75.6 5.0 34 174-214 630-663 (1495)
379 COG4136 ABC-type uncharacteriz 97.3 0.00028 6.1E-09 56.7 4.1 37 171-214 12-48 (213)
380 PLN03130 ABC transporter C fam 97.3 0.00028 6E-09 75.1 5.0 37 174-217 630-667 (1622)
381 PRK09270 nucleoside triphospha 97.2 0.00029 6.3E-09 59.7 3.8 23 193-215 32-54 (229)
382 KOG0055|consensus 97.1 0.00036 7.8E-09 71.2 3.5 36 172-214 364-399 (1228)
383 TIGR02788 VirB11 P-type DNA tr 97.1 0.00034 7.5E-09 62.1 2.7 29 180-215 137-165 (308)
384 TIGR00554 panK_bact pantothena 97.1 0.00058 1.3E-08 60.3 4.0 21 194-214 62-82 (290)
385 COG1123 ATPase components of v 97.1 0.00065 1.4E-08 64.3 4.6 36 175-217 23-59 (539)
386 KOG0061|consensus 97.1 0.00058 1.3E-08 66.2 4.3 37 172-215 41-77 (613)
387 COG4618 ArpD ABC-type protease 97.1 0.00048 1E-08 64.5 3.6 33 175-214 350-382 (580)
388 TIGR00630 uvra excinuclease AB 97.0 0.00077 1.7E-08 68.0 4.8 33 176-215 622-654 (924)
389 COG2401 ABC-type ATPase fused 96.9 0.001 2.2E-08 61.2 4.2 38 173-217 395-432 (593)
390 TIGR02524 dot_icm_DotB Dot/Icm 96.8 0.00098 2.1E-08 60.5 3.5 20 195-214 135-154 (358)
391 KOG0059|consensus 96.8 0.001 2.3E-08 67.0 3.9 39 169-214 572-611 (885)
392 KOG0219|consensus 96.8 0.00048 1.1E-08 67.1 1.4 69 146-228 617-688 (902)
393 PRK10416 signal recognition pa 96.7 0.0017 3.8E-08 58.0 4.3 32 194-227 114-145 (318)
394 PRK09183 transposase/IS protei 96.7 0.0018 3.9E-08 56.2 4.3 31 195-227 103-133 (259)
395 PRK14721 flhF flagellar biosyn 96.7 0.0019 4.2E-08 59.7 4.6 26 195-220 192-217 (420)
396 COG3910 Predicted ATPase [Gene 96.7 0.0014 3E-08 54.5 3.0 24 195-218 38-61 (233)
397 TIGR00618 sbcc exonuclease Sbc 96.7 0.0014 3E-08 67.2 3.7 24 195-218 27-50 (1042)
398 PRK07196 fliI flagellum-specif 96.7 0.0014 3E-08 60.9 3.3 33 175-215 144-176 (434)
399 PRK06995 flhF flagellar biosyn 96.7 0.0023 4.9E-08 60.3 4.7 24 195-218 257-280 (484)
400 PRK10246 exonuclease subunit S 96.7 0.0016 3.4E-08 66.9 3.9 25 195-219 31-55 (1047)
401 PHA02562 46 endonuclease subun 96.7 0.0018 3.9E-08 61.6 4.0 24 195-218 28-51 (562)
402 KOG0055|consensus 96.7 0.0014 3E-08 67.0 3.4 36 172-214 1001-1036(1228)
403 PRK00635 excinuclease ABC subu 96.6 0.0021 4.6E-08 68.5 4.7 31 176-213 610-640 (1809)
404 PRK00349 uvrA excinuclease ABC 96.6 0.0025 5.5E-08 64.5 4.8 33 176-215 624-656 (943)
405 TIGR03015 pepcterm_ATPase puta 96.6 0.002 4.4E-08 55.2 3.6 21 195-215 44-64 (269)
406 KOG0054|consensus 96.6 0.0023 4.9E-08 66.7 4.3 48 153-214 1138-1186(1381)
407 PF10240 DUF2464: Protein of u 96.6 0.0049 1.1E-07 53.3 5.7 75 11-96 57-131 (251)
408 COG1245 Predicted ATPase, RNas 96.5 0.0027 5.9E-08 59.0 3.9 40 174-215 349-388 (591)
409 COG0419 SbcC ATPase involved i 96.5 0.003 6.4E-08 63.9 4.4 25 194-218 25-49 (908)
410 cd02019 NK Nucleoside/nucleoti 96.5 0.0025 5.4E-08 43.8 2.7 20 197-216 2-21 (69)
411 TIGR00750 lao LAO/AO transport 96.5 0.0023 4.9E-08 56.6 3.1 23 195-217 35-57 (300)
412 PRK14722 flhF flagellar biosyn 96.5 0.0035 7.5E-08 57.2 4.4 25 195-219 138-162 (374)
413 COG5265 ATM1 ABC-type transpor 96.4 0.0026 5.7E-08 58.5 3.5 40 168-214 270-309 (497)
414 cd01136 ATPase_flagellum-secre 96.4 0.0032 7E-08 56.4 4.0 33 175-215 58-90 (326)
415 TIGR03185 DNA_S_dndD DNA sulfu 96.4 0.003 6.4E-08 61.6 3.9 23 195-217 29-51 (650)
416 TIGR02858 spore_III_AA stage I 96.4 0.003 6.5E-08 55.2 3.5 22 194-215 111-132 (270)
417 cd00009 AAA The AAA+ (ATPases 96.4 0.0038 8.2E-08 47.0 3.4 23 195-217 20-42 (151)
418 TIGR02546 III_secr_ATP type II 96.3 0.0033 7.2E-08 58.3 3.6 34 175-216 134-167 (422)
419 PRK05922 type III secretion sy 96.3 0.0033 7.1E-08 58.4 3.6 27 182-215 152-178 (434)
420 PRK08149 ATP synthase SpaL; Va 96.3 0.004 8.7E-08 57.8 3.9 33 175-215 140-172 (428)
421 PF03215 Rad17: Rad17 cell cyc 96.3 0.0036 7.8E-08 59.5 3.7 22 194-215 45-66 (519)
422 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0043 9.3E-08 48.6 3.5 22 195-216 23-44 (133)
423 TIGR00606 rad50 rad50. This fa 96.3 0.0045 9.8E-08 65.0 4.7 23 195-217 29-51 (1311)
424 PLN02796 D-glycerate 3-kinase 96.3 0.0038 8.2E-08 56.3 3.5 21 195-215 101-121 (347)
425 TIGR01420 pilT_fam pilus retra 96.3 0.0037 8E-08 56.3 3.5 21 195-215 123-143 (343)
426 KOG0066|consensus 96.3 0.0033 7.2E-08 58.3 3.0 31 179-216 282-312 (807)
427 PRK08972 fliI flagellum-specif 96.2 0.0043 9.4E-08 57.7 3.8 27 182-215 157-183 (444)
428 PRK14974 cell division protein 96.2 0.0055 1.2E-07 55.2 4.3 32 194-227 140-171 (336)
429 PRK00635 excinuclease ABC subu 96.2 0.0035 7.6E-08 66.9 3.4 33 175-214 949-981 (1809)
430 PRK04863 mukB cell division pr 96.2 0.0048 1E-07 65.1 4.4 24 195-218 28-51 (1486)
431 PLN02165 adenylate isopentenyl 96.2 0.0046 1E-07 55.5 3.6 25 193-217 42-66 (334)
432 COG4175 ProV ABC-type proline/ 96.2 0.0065 1.4E-07 54.2 4.5 33 175-214 42-74 (386)
433 PRK14723 flhF flagellar biosyn 96.2 0.0043 9.2E-08 61.3 3.7 23 195-217 186-208 (767)
434 PRK06002 fliI flagellum-specif 96.1 0.0095 2.1E-07 55.6 5.5 33 176-216 155-187 (450)
435 TIGR01026 fliI_yscN ATPase Fli 96.1 0.0053 1.1E-07 57.2 3.8 32 176-215 153-184 (440)
436 PRK05688 fliI flagellum-specif 96.1 0.006 1.3E-07 56.9 4.0 32 176-215 158-189 (451)
437 PRK07594 type III secretion sy 96.1 0.0045 9.7E-08 57.5 3.1 33 175-215 144-176 (433)
438 PRK06936 type III secretion sy 96.1 0.006 1.3E-07 56.8 3.8 33 176-216 152-184 (439)
439 PRK09099 type III secretion sy 96.0 0.0066 1.4E-07 56.6 4.0 34 175-216 152-185 (441)
440 PRK07721 fliI flagellum-specif 96.0 0.0057 1.2E-07 57.0 3.4 32 176-215 148-179 (438)
441 PRK13851 type IV secretion sys 96.0 0.0052 1.1E-07 55.5 3.0 21 195-215 163-183 (344)
442 PRK11889 flhF flagellar biosyn 96.0 0.0081 1.8E-07 55.3 4.2 32 194-227 241-272 (436)
443 cd01129 PulE-GspE PulE/GspE Th 95.9 0.0067 1.4E-07 52.8 3.4 20 195-214 81-100 (264)
444 PRK13477 bifunctional pantoate 95.9 0.0096 2.1E-07 56.5 4.6 38 170-215 268-305 (512)
445 TIGR00767 rho transcription te 95.9 0.01 2.3E-07 54.6 4.7 31 179-216 160-190 (415)
446 TIGR03498 FliI_clade3 flagella 95.9 0.0087 1.9E-07 55.4 4.0 29 180-215 133-161 (418)
447 KOG4000|consensus 95.9 0.013 2.8E-07 49.8 4.6 74 12-96 77-150 (291)
448 COG4172 ABC-type uncharacteriz 95.9 0.014 3E-07 53.7 5.1 34 174-214 23-56 (534)
449 TIGR03496 FliI_clade1 flagella 95.9 0.0097 2.1E-07 55.0 4.2 33 175-215 126-158 (411)
450 KOG0018|consensus 95.8 0.009 2E-07 60.0 4.1 36 169-217 13-48 (1141)
451 TIGR00064 ftsY signal recognit 95.8 0.011 2.4E-07 51.7 4.2 32 194-227 72-103 (272)
452 PRK10463 hydrogenase nickel in 95.8 0.0072 1.6E-07 53.3 3.0 20 195-214 105-124 (290)
453 PLN02318 phosphoribulokinase/u 95.8 0.0078 1.7E-07 58.0 3.4 22 195-216 66-87 (656)
454 TIGR02782 TrbB_P P-type conjug 95.8 0.0078 1.7E-07 53.3 3.1 21 195-215 133-153 (299)
455 PRK08472 fliI flagellum-specif 95.8 0.0083 1.8E-07 55.8 3.4 33 176-216 147-179 (434)
456 COG1245 Predicted ATPase, RNas 95.7 0.012 2.6E-07 54.9 4.2 39 169-215 83-121 (591)
457 PRK09862 putative ATP-dependen 95.7 0.0075 1.6E-07 57.2 2.8 39 170-215 193-231 (506)
458 PRK07960 fliI flagellum-specif 95.7 0.008 1.7E-07 56.1 2.9 27 182-215 170-196 (455)
459 PLN03046 D-glycerate 3-kinase; 95.6 0.011 2.3E-07 54.9 3.5 22 194-215 212-233 (460)
460 PRK06820 type III secretion sy 95.6 0.012 2.6E-07 54.8 3.9 33 176-216 153-185 (440)
461 PRK12726 flagellar biosynthesi 95.6 0.014 3.1E-07 53.4 4.3 31 195-227 207-237 (407)
462 TIGR03499 FlhF flagellar biosy 95.6 0.016 3.4E-07 50.9 4.4 23 195-217 195-217 (282)
463 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.6 0.011 2.3E-07 49.0 3.1 25 195-219 39-63 (205)
464 PRK12727 flagellar biosynthesi 95.5 0.016 3.4E-07 55.2 4.3 26 195-220 351-376 (559)
465 PRK09435 membrane ATPase/prote 95.5 0.014 3.1E-07 52.5 3.7 32 194-227 56-87 (332)
466 cd01878 HflX HflX subfamily. 95.5 0.013 2.9E-07 48.0 3.3 22 195-216 42-63 (204)
467 TIGR03497 FliI_clade2 flagella 95.5 0.014 3.1E-07 54.0 3.8 32 176-215 127-158 (413)
468 PTZ00202 tuzin; Provisional 95.5 0.012 2.7E-07 54.9 3.3 21 195-215 287-307 (550)
469 KOG1970|consensus 95.4 0.013 2.7E-07 55.6 3.3 23 193-215 109-131 (634)
470 PRK06731 flhF flagellar biosyn 95.4 0.017 3.8E-07 50.4 3.9 24 194-217 75-98 (270)
471 PRK13894 conjugal transfer ATP 95.4 0.013 2.8E-07 52.4 3.1 22 195-216 149-170 (319)
472 TIGR02533 type_II_gspE general 95.4 0.013 2.9E-07 55.3 3.3 20 195-214 243-262 (486)
473 PRK06315 type III secretion sy 95.4 0.014 3E-07 54.5 3.3 33 176-216 154-186 (442)
474 PF03193 DUF258: Protein of un 95.3 0.017 3.8E-07 46.6 3.4 21 195-215 36-56 (161)
475 TIGR02525 plasmid_TraJ plasmid 95.3 0.015 3.3E-07 53.0 3.4 20 195-214 150-169 (372)
476 PF00437 T2SE: Type II/IV secr 95.3 0.015 3.2E-07 50.2 3.1 21 195-215 128-148 (270)
477 TIGR01526 nadR_NMN_Atrans nico 95.2 0.012 2.5E-07 52.8 2.3 22 195-216 163-184 (325)
478 TIGR00602 rad24 checkpoint pro 95.2 0.015 3.3E-07 56.6 3.2 21 195-215 111-131 (637)
479 smart00763 AAA_PrkA PrkA AAA d 95.2 0.02 4.3E-07 52.0 3.8 22 193-214 77-98 (361)
480 PF13245 AAA_19: Part of AAA d 95.2 0.029 6.2E-07 39.5 3.8 20 195-214 11-30 (76)
481 PRK08927 fliI flagellum-specif 95.1 0.022 4.8E-07 53.1 3.7 22 195-216 159-180 (442)
482 PRK13833 conjugal transfer pro 95.1 0.018 4E-07 51.6 3.1 21 195-215 145-165 (323)
483 COG2804 PulE Type II secretory 95.0 0.02 4.3E-07 53.8 3.4 22 193-214 257-278 (500)
484 smart00053 DYNc Dynamin, GTPas 95.0 0.021 4.6E-07 49.1 3.3 22 195-216 27-48 (240)
485 cd01854 YjeQ_engC YjeQ/EngC. 95.0 0.02 4.3E-07 50.3 3.0 21 195-215 162-182 (287)
486 TIGR00368 Mg chelatase-related 95.0 0.012 2.7E-07 55.7 1.7 39 170-215 194-232 (499)
487 PRK00098 GTPase RsgA; Reviewed 94.9 0.022 4.9E-07 50.3 3.3 21 195-215 165-185 (298)
488 PF03308 ArgK: ArgK protein; 94.9 0.028 6.1E-07 48.8 3.7 25 194-218 29-53 (266)
489 PTZ00035 Rad51 protein; Provis 94.9 0.028 6.2E-07 50.6 3.7 25 195-219 119-143 (337)
490 PRK13900 type IV secretion sys 94.8 0.016 3.5E-07 52.1 2.1 20 195-214 161-180 (332)
491 PRK05703 flhF flagellar biosyn 94.8 0.034 7.5E-07 51.6 4.3 24 195-218 222-245 (424)
492 PRK00349 uvrA excinuclease ABC 94.8 0.018 4E-07 58.4 2.5 30 175-211 14-43 (943)
493 KOG0065|consensus 94.7 0.02 4.2E-07 59.3 2.5 33 176-215 806-838 (1391)
494 PRK08099 bifunctional DNA-bind 94.7 0.028 6E-07 51.8 3.3 23 194-216 219-241 (399)
495 PRK06526 transposase; Provisio 94.7 0.042 9.2E-07 47.5 4.2 32 195-228 99-130 (254)
496 PRK06793 fliI flagellum-specif 94.7 0.037 8.1E-07 51.5 4.1 33 176-216 146-178 (432)
497 COG2805 PilT Tfp pilus assembl 94.6 0.032 7E-07 49.5 3.3 20 194-213 125-144 (353)
498 TIGR02030 BchI-ChlI magnesium 94.6 0.033 7.1E-07 50.2 3.4 24 195-218 26-49 (337)
499 PRK06851 hypothetical protein; 94.6 0.044 9.5E-07 50.0 4.2 32 194-227 30-61 (367)
500 cd01122 GP4d_helicase GP4d_hel 94.6 0.048 1E-06 46.9 4.3 33 195-228 31-63 (271)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.95 E-value=7e-28 Score=235.36 Aligned_cols=167 Identities=21% Similarity=0.299 Sum_probs=137.3
Q ss_pred cccccceeeEeeccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhcc-ee-------e--
Q psy13262 45 ADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICERG-GV-------V-- 113 (229)
Q Consensus 45 a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~~-~~-------v-- 113 (229)
..+++|..++.+++||++|+|.++++.++|+|||.+..+.+ +..|.....+++..........++. .+ +
T Consensus 181 ~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~ 260 (782)
T PRK00409 181 QKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAK 260 (782)
T ss_pred ccccccceEEEECCEEEEEechhhhccCCCceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789877777889999999999999999999999999988 8889988888886665443333321 00 0
Q ss_pred eecccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCC
Q psy13262 114 DYKPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGE 189 (229)
Q Consensus 114 ~l~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~ 189 (229)
....+....+.++++|++.+++ .+++|+|.+.+. ..+.+.++|||++.. ..+||||+.+++
T Consensus 261 ~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~----~~i~l~~~rHPll~~-~~~Vpndi~l~~---------- 325 (782)
T PRK00409 261 NLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDE----GKIDLRQARHPLLDG-EKVVPKDISLGF---------- 325 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCC----CcEEEcCcCCceecc-CceECceeEECC----------
Confidence 0134456788899999999865 688999999864 468899999999964 579999999986
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
+.++++|||||||||||+||++|++++|||+|+|||.
T Consensus 326 ---~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa 362 (782)
T PRK00409 326 ---DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPA 362 (782)
T ss_pred ---CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 4589999999999999999999999999999999983
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.92 E-value=1.9e-25 Score=217.96 Aligned_cols=167 Identities=19% Similarity=0.148 Sum_probs=137.3
Q ss_pred cccccceeeEeeccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhcce-ee---------
Q psy13262 45 ADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICERGG-VV--------- 113 (229)
Q Consensus 45 a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~~~-~v--------- 113 (229)
+.++||..++.+++|||+|+|.++++.++|+|||.+..+.+ +..|.....+++..........++.. ++
T Consensus 176 ~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~ 255 (771)
T TIGR01069 176 AKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQE 255 (771)
T ss_pred hhhhcCceEEEECCEEEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888877788889999999999999999999999998888 88899899888877665544433311 11
Q ss_pred eecccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCC
Q psy13262 114 DYKPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGE 189 (229)
Q Consensus 114 ~l~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~ 189 (229)
....+..+.+.++++|++.+.+ .+++++|.+.+. ..+.+.++|||++.. ..+||||+.++.
T Consensus 256 ~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~----~~i~l~~~rhPll~~-~~~vp~di~l~~---------- 320 (771)
T TIGR01069 256 YLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFT----GKIILENARHPLLKE-PKVVPFTLNLKF---------- 320 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCC----CCEEEccccCceecC-CceEeceeEeCC----------
Confidence 0134556788899999999865 578999998764 378999999999853 459999999986
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
+.+.++||||||||||||||+++++++|+|+|++||.
T Consensus 321 ---~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa 357 (771)
T TIGR01069 321 ---EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPA 357 (771)
T ss_pred ---CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccC
Confidence 4489999999999999999999999999999999874
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=99.89 E-value=1.9e-23 Score=205.44 Aligned_cols=153 Identities=23% Similarity=0.307 Sum_probs=115.2
Q ss_pred cEEEEEeecccccCCCc-EEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc-ceee---------eecccccccchh
Q psy13262 58 TRYLCVSKTESLFQIDY-IVENICIINEK-ETPPDGFCLIARTLDSDQGQICER-GGVV---------DYKPQQSNNTIF 125 (229)
Q Consensus 58 gRyv~~vk~~~~~~~~g-iV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~-~~~v---------~l~~l~~~~~~~ 125 (229)
.+|++.++.....++++ .+++-+..+.. +..|+ +..+++.....+..+.+. ..+. ....+....+.+
T Consensus 456 ~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 534 (840)
T TIGR01070 456 FGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARAL 534 (840)
T ss_pred ceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899988887777887 67775554554 55565 566665554433322221 1100 113455678889
Q ss_pred hhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcEEEE
Q psy13262 126 SQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLL 199 (229)
Q Consensus 126 ~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~l 199 (229)
+++|++.+++ ++++|+|++.+. +.+.+.++|||++.. ...|||||+.+++ +.+.++|
T Consensus 535 a~lD~l~s~A~~a~~~~~~~P~~~~~----~~i~i~~~RHP~le~~~~~~~VpNdi~l~~-------------~~~~~iI 597 (840)
T TIGR01070 535 AELDVLANLAEVAETLHYTRPRFGDD----PQLRIREGRHPVVEQVLRTPFVPNDLEMAH-------------NRRMLLI 597 (840)
T ss_pred HHHHHHHHHHHHHHHCCCcCceecCC----CcEEEEeeECHHHHhccCCCeEeeeeecCC-------------CccEEEE
Confidence 9999999875 688999999875 468899999999952 2469999999986 4589999
Q ss_pred EeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 200 TGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 200 tGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
||||||||||+||++||+++|||+|+|||
T Consensus 598 TGPNmgGKSt~lrqvali~imAq~G~~VP 626 (840)
T TIGR01070 598 TGPNMGGKSTYMRQTALIALLAQIGSFVP 626 (840)
T ss_pred ECCCCCCchHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999998
No 4
>KOG4000|consensus
Probab=99.86 E-value=6.4e-22 Score=164.37 Aligned_cols=129 Identities=36% Similarity=0.730 Sum_probs=113.0
Q ss_pred ChHhhhh-hcCCCCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeec-cEEEEEeecccc--cCCCc-E
Q psy13262 1 MNKQVFQ-SFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKTESL--FQIDY-I 75 (229)
Q Consensus 1 ~~~~~~~-~~~~~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rk-gRyv~~vk~~~~--~~~~g-i 75 (229)
|+|-++. +|+|+++|||+||||+++++||+||..|+++.|.|.|||+|+|..|+.++ .||+|.+|++.+ .+++. |
T Consensus 1 ~~~~~s~a~~~~~~~PIT~~~IVad~nraP~gf~~I~~~~dd~~dADLWrDg~f~~~~~tRYlC~s~s~~keNshlp~~V 80 (291)
T KOG4000|consen 1 EVKDLSEASFLPDNRPITSLHIVADFNRAPKGFSAISRTYDDDSDADLWRDGSFFGRQNTRYLCLSKSEGKENSHLPEYV 80 (291)
T ss_pred CchhccccccCCCCCcceeEEEEeccccCCCccchheeecccccchhhhhccceeecceeEEEEeecccCcccccCccee
Confidence 3455554 35999999999999999999999999888888888999999997788877 999999998874 45666 9
Q ss_pred EEEeEEecccCCCCchhhHHHHhhhhhhhhhhhcceeeeecccccccchhhhhh
Q psy13262 76 VENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRN 129 (229)
Q Consensus 76 V~di~~l~~~~~~P~~y~~l~~~~~s~qt~l~e~~~~v~l~~l~~~~~~~~~~d 129 (229)
|++++++.+++++|.+|+.+.++.+++++++.|++.++++.++....+++..+.
T Consensus 81 v~~l~vI~~kdp~P~gf~~I~~TaDs~eka~RKk~lcik~~pRd~v~~AI~dIi 134 (291)
T KOG4000|consen 81 VETLQVISDKDPPPKGFSQISRTADSDEKAWRKKQLCIKLSPRDTVTQAITDII 134 (291)
T ss_pred eEEEEEeecCCCCCccceeeeecccchHHhhhhceeEEEecCCccHHhhheeeE
Confidence 999999999999999999999999999999999999999888777776666655
No 5
>PF10240 DUF2464: Protein of unknown function (DUF2464); InterPro: IPR018798 FAM125A and FAM125B (also known as Multivesicular body subunit 12) interacts with CD2AP and CIN85/SH3KBP1, and is thought to be involved in the ligand-mediated internalization and down-regulation of EGF receptor [].; PDB: 3TOW_A.
Probab=99.86 E-value=1.4e-22 Score=173.53 Aligned_cols=114 Identities=42% Similarity=0.724 Sum_probs=65.4
Q ss_pred CCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeec-cEEEEEeecccccCCCcEEEEeEEecccCCCCchh
Q psy13262 14 KPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKTESLFQIDYIVENICIINEKETPPDGF 92 (229)
Q Consensus 14 ~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rk-gRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~~y 92 (229)
+|||+||||+++++||+||++|++|+|++.||+||++ .+|.+| +||+|.+|++. +..+.||+|+.++++++.+|.||
T Consensus 1 ~PIT~v~~v~~~~~cP~gy~~is~T~d~g~dAdlw~~-~~f~~k~~rYLC~s~~~~-~~~~~Vv~di~ii~~k~~~P~Gy 78 (251)
T PF10240_consen 1 RPITAVGIVASKNKCPPGYTVISRTVDQGADADLWKG-GFFGSKSTRYLCFSKEES-GTPGNVVTDIQIIDEKDPIPHGY 78 (251)
T ss_dssp ----EEEEESSTT---TT-EE--B-TT-S-B---S----TTS-----EEEEE-----GGG-EEEEEEEEEETTS---TT-
T ss_pred CCcceEEEEecCCCCCCCCeEEEeeccCCCchhhccc-ccccCCCeEEEEEEcccC-CCCCCEEEEEEEecCCCCCCCCc
Confidence 6999999999999999999999999995499999998 557767 99999999996 45689999999999999999999
Q ss_pred hHHHHhhhhhhhhhhhcceeeeecccccccchhhhhh
Q psy13262 93 CLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRN 129 (229)
Q Consensus 93 ~~l~~~~~s~qt~l~e~~~~v~l~~l~~~~~~~~~~d 129 (229)
+.+.++.++.+++++|++.|+++.++.++..++..+.
T Consensus 79 ~~i~~t~dt~~~a~rKkrLCvK~~pr~sa~~AV~DI~ 115 (251)
T PF10240_consen 79 SYISETVDTKEKALRKKRLCVKLSPRGSAETAVTDII 115 (251)
T ss_dssp EE--B-TTT--B--SSEEEEEEEEEGGG-S-EEEEEE
T ss_pred EeccccccchhhhhcceEEEEEeeeccchhhheeeEE
Confidence 9999999999999999999999988777766665554
No 6
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.85 E-value=1.1e-21 Score=193.68 Aligned_cols=152 Identities=23% Similarity=0.322 Sum_probs=108.0
Q ss_pred EEEEEeecccccCCCc-EEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc-ce--------ee-eecccccccchhh
Q psy13262 59 RYLCVSKTESLFQIDY-IVENICIINEK-ETPPDGFCLIARTLDSDQGQICER-GG--------VV-DYKPQQSNNTIFS 126 (229)
Q Consensus 59 Ryv~~vk~~~~~~~~g-iV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~-~~--------~v-~l~~l~~~~~~~~ 126 (229)
.|++.++......+++ .++.-...+.. +..|+ ...+++.....+..+.+. .. +. ....+....++++
T Consensus 471 gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la 549 (854)
T PRK05399 471 GYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKALA 549 (854)
T ss_pred eEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677776665555665 54442222322 44444 555555554433222221 00 00 1134556788899
Q ss_pred hhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC---CceeeCCeeEecCccceeccCCCCCCCCcEEEE
Q psy13262 127 QRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG---DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLL 199 (229)
Q Consensus 127 ~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~---~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~l 199 (229)
++|++.+++ ++++|+|++.+. +.+.+.++|||++.. ...|||||+.+++ +.+.++|
T Consensus 550 ~lD~l~s~A~~a~~~~~~~P~~~~~----~~l~i~~~rHP~le~~~~~~~~vpnd~~l~~-------------~~~~~ii 612 (854)
T PRK05399 550 ELDVLASLAEVAEENNYVRPEFTDD----PGIDIEEGRHPVVEQVLGGEPFVPNDCDLDE-------------ERRLLLI 612 (854)
T ss_pred HHHHHHHHHHHHHHCCccccEEeCC----CCEEEEeccCcEEecccCCCceEecceeeCC-------------CCcEEEE
Confidence 999999975 688999999874 458899999999953 3679999999985 4589999
Q ss_pred EeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 200 TGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 200 tGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
||||||||||+||++||+++|||+|+|||
T Consensus 613 TGpN~~GKSt~lr~v~l~~ilAq~G~~VP 641 (854)
T PRK05399 613 TGPNMAGKSTYMRQVALIVLLAQIGSFVP 641 (854)
T ss_pred ECCCCCCcHHHHHHHHHHHHHHhcCCcee
Confidence 99999999999999999999999999998
No 7
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.85 E-value=9.3e-22 Score=192.59 Aligned_cols=96 Identities=29% Similarity=0.480 Sum_probs=83.4
Q ss_pred cccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCc--eeeCCeeEecCccceeccCCC
Q psy13262 116 KPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQ--TYIPNSTVIGRCKEDVESGGE 189 (229)
Q Consensus 116 ~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~--~~vp~~~~l~~~~~~~~~~~~ 189 (229)
..+.+....++++|++.+++ ..++|+|++.+..+ +.+.++|||++.... .|||||+.+++
T Consensus 540 ~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~~----l~i~~gRHPvvE~~~~~~fVpNd~~L~~---------- 605 (843)
T COG0249 540 NELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSND----LEIKEGRHPVVEAVLDNGFVPNDIDLSG---------- 605 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCCC----EEEEecCcchhhhhccCCcccCceeeCC----------
Confidence 45566788899999999876 68899999998643 788999999996322 29999999997
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
..++++||||||||||||||++||+++|||+||+||
T Consensus 606 ---~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVP 641 (843)
T COG0249 606 ---NRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVP 641 (843)
T ss_pred ---CceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCee
Confidence 349999999999999999999999999999999998
No 8
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.83 E-value=4.7e-21 Score=185.26 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=131.1
Q ss_pred cccccceeeEeeccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc--------ceeee-
Q psy13262 45 ADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICER--------GGVVD- 114 (229)
Q Consensus 45 a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v~- 114 (229)
+.+++|..++++++||++|+|+++++.++|+|||.+..+.+ +..|.....+++........-.++ ...+.
T Consensus 173 ~~~L~e~~v~~r~~r~vlpvk~~fk~~i~giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~ 252 (753)
T COG1193 173 AKYLQDRIVTTRDGREVLPVKAEFKGAIKGIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAP 252 (753)
T ss_pred hHhhhhceEeccCCeEEeHHHHHhhhhcCceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhh
Confidence 78999987777889999999999999999999999999977 888999998877665433111111 00000
Q ss_pred -ecccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCC
Q psy13262 115 -YKPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGE 189 (229)
Q Consensus 115 -l~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~ 189 (229)
...+..+...++.+|++.+.. ...+..|.+.++ -.+.+.+++||++... +|+++.++.
T Consensus 253 ~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~----~~l~l~~~~HPll~~~---v~~~i~~~~---------- 315 (753)
T COG1193 253 VIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSND----GVLELLDARHPLLKED---VPNDLELGE---------- 315 (753)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCC----ceEEeccccCccCccc---ccccccccc----------
Confidence 012234667788999988854 467788998853 5789999999999652 889888886
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
+.+.++|||||+||||+.||++|++.+|+|+|+|+|.
T Consensus 316 ---e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a 352 (753)
T COG1193 316 ---ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPA 352 (753)
T ss_pred ---ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeec
Confidence 5689999999999999999999999999999999974
No 9
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=99.80 E-value=5.6e-20 Score=157.02 Aligned_cols=74 Identities=32% Similarity=0.547 Sum_probs=58.6
Q ss_pred CccceEecCCCCCceEEeccccCcccC---CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 139 VCVPTFLGLEEPHPYISALESLYPCAT---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 139 ~~~P~~~~~~~~~~~i~~~~~~hpll~---~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
||+|++.++ ..+.++++|||++. +...+||||+.+++- ..+.++|||||||||||+||++|
T Consensus 1 y~~P~~~~~----~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~------------~~~~~iiTGpN~sGKSt~lk~i~ 64 (235)
T PF00488_consen 1 YCRPKISEE----KSLKIKEGRHPLLEEKLENKKFVPNDIELSNN------------KSRIIIITGPNMSGKSTFLKQIG 64 (235)
T ss_dssp EB-EEEEST----TEEEEEEE--TTHHHHTTTSSC--EEEEESSS------------SSSEEEEESSTTSSHHHHHHHHH
T ss_pred CcccEEcCC----CCEEEEeccCCEEeccccCCceecceeecCCC------------ceeEEEEeCCCccchhhHHHHHH
Confidence 689999986 37899999999995 246889999999871 23799999999999999999999
Q ss_pred HHHHHHhcCCCcc
Q psy13262 216 LITILAQMENPQL 228 (229)
Q Consensus 216 l~~~ma~~G~~v~ 228 (229)
++++|||+|+|||
T Consensus 65 ~~~ilaq~G~~VP 77 (235)
T PF00488_consen 65 LIVILAQIGCFVP 77 (235)
T ss_dssp HHHHHHTTT--BS
T ss_pred HHhhhhhcCceee
Confidence 9999999999998
No 10
>KOG0218|consensus
Probab=99.77 E-value=1.7e-19 Score=169.25 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=79.6
Q ss_pred ccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccC--CCceeeCCeeEecCccceeccCCCC
Q psy13262 117 PQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCAT--GDQTYIPNSTVIGRCKEDVESGGEG 190 (229)
Q Consensus 117 ~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~--~~~~~vp~~~~l~~~~~~~~~~~~~ 190 (229)
.+..+...++.+||+.+++ ..++|||++.+.. .-|.++++|||.+. -...|||||+.+..
T Consensus 762 elrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~---~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~----------- 827 (1070)
T KOG0218|consen 762 ELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ---QEIIIKNGRHPVIESLLVDYFVPNDIMLSP----------- 827 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch---hhhhhhcCCCchHHHHhhhccCCCcceecC-----------
Confidence 4455677889999999986 5789999999842 23455667777764 12459999999986
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 191 NRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 191 ~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+..++.+||||||||||.++|++||+++|||+|++||
T Consensus 828 -egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVP 864 (1070)
T KOG0218|consen 828 -EGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVP 864 (1070)
T ss_pred -CCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccc
Confidence 2459999999999999999999999999999999998
No 11
>KOG0219|consensus
Probab=99.76 E-value=2.3e-19 Score=170.29 Aligned_cols=127 Identities=28% Similarity=0.451 Sum_probs=100.7
Q ss_pred CCCCchhhHHHHhhhhhhhhhhhc-----ceeeeecccccccchhhhhhHHHHHH------hCCCccceEecCCCCCceE
Q psy13262 86 ETPPDGFCLIARTLDSDQGQICER-----GGVVDYKPQQSNNTIFSQRNILKDMY------QQGVCVPTFLGLEEPHPYI 154 (229)
Q Consensus 86 ~~~P~~y~~l~~~~~s~qt~l~e~-----~~~v~l~~l~~~~~~~~~~d~l~~~~------~~~~~~P~~~~~~~~~~~i 154 (229)
..+-+.|.....+++..|..+.++ ..|. .++.+....+|++|++.+++ ..+++||.+.+.+.. -+
T Consensus 540 ~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~--Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~--rl 615 (902)
T KOG0219|consen 540 SSLNDEFMSLQKEYDEAQNEIVREIIKIAATYT--PPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSK--RL 615 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchh--HH
Confidence 556667777777777777666555 3444 56777888999999998875 467889988876543 35
Q ss_pred EeccccCcccCCC--ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 155 SALESLYPCATGD--QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 155 ~~~~~~hpll~~~--~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
.+++.|||+++.+ ..|+|||..++.. +.++.+|||||||||||++|++|.+++|||+||+||
T Consensus 616 ~l~~~rHp~lE~Qd~~~fIpNdv~le~~------------~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVP 679 (902)
T KOG0219|consen 616 ELKQSRHPVLEGQDEIPFIPNDVVLEKG------------KCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVP 679 (902)
T ss_pred HHHhcccchhhccccCCCCCCccccccC------------CceEEEEeCCCcCccchhhhhhhHHHHHHHhCCcee
Confidence 6778899999643 3689999988741 458999999999999999999999999999999998
No 12
>KOG0220|consensus
Probab=99.67 E-value=6.4e-17 Score=152.04 Aligned_cols=90 Identities=26% Similarity=0.337 Sum_probs=75.3
Q ss_pred cccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCC
Q psy13262 120 SNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRK 193 (229)
Q Consensus 120 ~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~ 193 (229)
...++.+.+|.|+.++ ..++++|++.+. +.+.++|||+|.. ...++.|++.+.. +
T Consensus 560 ~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~s------laI~qGRHPILe~i~~ek~i~N~t~~t~-------------~ 620 (867)
T KOG0220|consen 560 KLAEAVSMLDMLCSFAHACTLSDYVRPEFTDS------LAIKQGRHPILEKISAEKPIANNTYVTE-------------G 620 (867)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCCc------eeeccCCCchhhhhcccCcccCcceeec-------------c
Confidence 3566778899888865 457899999873 6677788888853 2457888888887 5
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
.+..+||||||+||||+||++||+++|||+||.||
T Consensus 621 s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IP 655 (867)
T KOG0220|consen 621 SNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVP 655 (867)
T ss_pred cceEEEECCCCCcchHHHHHHHHHHHHHHhccCcc
Confidence 68999999999999999999999999999999998
No 13
>KOG0217|consensus
Probab=99.61 E-value=7.1e-16 Score=149.54 Aligned_cols=99 Identities=28% Similarity=0.442 Sum_probs=81.4
Q ss_pred ccccchhhhhhHHHHHHh------CCCccceEecCCCCCceEEeccccCcccCCC---ceeeCCeeEecCccceeccCCC
Q psy13262 119 QSNNTIFSQRNILKDMYQ------QGVCVPTFLGLEEPHPYISALESLYPCATGD---QTYIPNSTVIGRCKEDVESGGE 189 (229)
Q Consensus 119 ~~~~~~~~~~d~l~~~~~------~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~---~~~vp~~~~l~~~~~~~~~~~~ 189 (229)
.+..+.++.+|+|.+++. ...|+|++.+....++++.+..++|||+... ..|+||++.+++-
T Consensus 826 ~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~--------- 896 (1125)
T KOG0217|consen 826 QATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGA--------- 896 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccCCCceeEEecccCceeecCcCCCccccchhhcccc---------
Confidence 456777899999999863 3489999988766666889999999999632 3689999999851
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
...+..++||||||||||+||+++++++|||+||=||
T Consensus 897 --~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VP 933 (1125)
T KOG0217|consen 897 --EENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVP 933 (1125)
T ss_pred --ccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCcc
Confidence 1335566999999999999999999999999998876
No 14
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.58 E-value=1.9e-15 Score=127.23 Aligned_cols=60 Identities=32% Similarity=0.523 Sum_probs=51.2
Q ss_pred eccccCcccCC-CceeeCCeeEecCccceeccCCCCCCC-CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 156 ALESLYPCATG-DQTYIPNSTVIGRCKEDVESGGEGNRK-PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 156 ~~~~~hpll~~-~~~~vp~~~~l~~~~~~~~~~~~~~~~-~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|||++.. ...+||||+.+++ + .+.++||||||+|||||||+++++++|+|+|++++
T Consensus 2 i~~~rHPll~~~~~~~vpnd~~l~~-------------~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~ 63 (213)
T cd03281 2 IQGGRHPLLELFVDSFVPNDTEIGG-------------GGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVP 63 (213)
T ss_pred cccccCCEEeccCCceEcceEEecC-------------CCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeE
Confidence 35667888752 2479999999986 3 38999999999999999999999999999999986
No 15
>KOG0221|consensus
Probab=99.56 E-value=1.2e-16 Score=148.17 Aligned_cols=92 Identities=28% Similarity=0.413 Sum_probs=76.7
Q ss_pred ccchhhhhhHHHHHH----hCCCccceEecCCCCCce-EEeccccCcccC-CCceeeCCeeEecCccceeccCCCCCCCC
Q psy13262 121 NNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPY-ISALESLYPCAT-GDQTYIPNSTVIGRCKEDVESGGEGNRKP 194 (229)
Q Consensus 121 ~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~-i~~~~~~hpll~-~~~~~vp~~~~l~~~~~~~~~~~~~~~~~ 194 (229)
.....+++|+|.+++ +++|.+|.++++ ++ +++.+.|||+.+ --+.|+||++.+++ ++.
T Consensus 536 ~l~laSrldvLls~a~~aa~~gy~~P~lv~e----~~il~I~ngrh~l~e~~~dtfvPNst~igg------------dkg 599 (849)
T KOG0221|consen 536 VLDLASRLDVLLSLASAAADYGYSRPRLVPE----VLILRIQNGRHPLMELCADTFVPNSTEIGG------------DKG 599 (849)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccccH----HHHHHHHcCChhHHHHHHHhcCCCceeecC------------CCc
Confidence 456678999998864 789999999885 33 566677777763 12589999999986 245
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+..+|||||.||||++||++||+++|||+|++||
T Consensus 600 ri~vITGpNasGKSiYlkqvglivfLahIGsFVP 633 (849)
T KOG0221|consen 600 RIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVP 633 (849)
T ss_pred eEEEEeCCCCCCceEEEeechhhhHHHhhccccc
Confidence 9999999999999999999999999999999998
No 16
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.55 E-value=6.8e-15 Score=122.45 Aligned_cols=59 Identities=34% Similarity=0.562 Sum_probs=49.9
Q ss_pred ccccCcccCC-CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 157 LESLYPCATG-DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 157 ~~~~hpll~~-~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+++|||++.. ...++|+++.+++ ..++++||||||+|||||||+++++.+|+|+|++||
T Consensus 3 ~~~~hp~~~~~~~~~~~~~~~i~~-------------~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp 62 (200)
T cd03280 3 REARHPLLPLQGEKVVPLDIQLGE-------------NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP 62 (200)
T ss_pred cccCCCEEeccCCceEcceEEECC-------------CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc
Confidence 4567777742 2468999998886 336899999999999999999999999999999987
No 17
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=8.6e-15 Score=124.07 Aligned_cols=60 Identities=43% Similarity=0.743 Sum_probs=49.2
Q ss_pred ccccCcccC--CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 157 LESLYPCAT--GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 157 ~~~~hpll~--~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+++|||++. ....++|||+.++. . +.++++|||||||||||+||++|++++|||+|+|||
T Consensus 3 ~~~~hpll~~~~~~~~v~~~~~~~~-----~-------~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vp 64 (222)
T cd03285 3 KEARHPCVEAQDDVAFIPNDVTLTR-----G-------KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVP 64 (222)
T ss_pred cccCCCEEeccCCCCeEEeeEEEee-----c-------CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcC
Confidence 445677764 23568899887764 1 348999999999999999999999999999999997
No 18
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.52 E-value=1.3e-14 Score=120.91 Aligned_cols=58 Identities=33% Similarity=0.429 Sum_probs=51.1
Q ss_pred eccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 156 ALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 156 ~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++++|||++.+ ..+++||+.++. + ++++||||||||||||||++++.++|+++|+||+
T Consensus 2 ~~~~~hp~~~~-~~~v~n~i~l~~-------g-------~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~ 59 (199)
T cd03283 2 AKNLGHPLIGR-EKRVANDIDMEK-------K-------NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVC 59 (199)
T ss_pred CcccCCCeecC-CCeecceEEEcC-------C-------cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEe
Confidence 45678999863 578999998886 1 8999999999999999999999999999999986
No 19
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=1.5e-14 Score=122.34 Aligned_cols=60 Identities=42% Similarity=0.701 Sum_probs=49.4
Q ss_pred ccccCcccC--CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 157 LESLYPCAT--GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 157 ~~~~hpll~--~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+++|||++. ....+||||+.+.. . +.++++||||||+||||+||+++++++|||+|+|||
T Consensus 3 ~~~rHPll~~~~~~~~v~ndi~l~~-----~-------~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vp 64 (218)
T cd03286 3 EELRHPCLNASTASSFVPNDVDLGA-----T-------SPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVP 64 (218)
T ss_pred ccccCCEEecccCCCeEEeeeEEee-----c-------CCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccC
Confidence 455777773 12468999988764 2 238999999999999999999999999999999998
No 20
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.51 E-value=1.4e-14 Score=122.30 Aligned_cols=60 Identities=37% Similarity=0.588 Sum_probs=50.8
Q ss_pred eccccCcccCC---CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 156 ALESLYPCATG---DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 156 ~~~~~hpll~~---~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|||++.. ...++|||+.+.. +.++++||||||+||||+||+++++++|+|+|++||
T Consensus 2 i~~~~hp~~~~~~~~~~~v~n~~~l~~-------------~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp 64 (216)
T cd03284 2 IEGGRHPVVEQVLDNEPFVPNDTELDP-------------ERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVP 64 (216)
T ss_pred cccccCCEEeeccCCCceEeeeEEecC-------------CceEEEEECCCCCChHHHHHHHHHHHHHhccCCeec
Confidence 34567777742 2568999999886 348999999999999999999999999999999987
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.48 E-value=4.3e-14 Score=117.74 Aligned_cols=59 Identities=39% Similarity=0.606 Sum_probs=51.0
Q ss_pred eccccCcccC---CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 156 ALESLYPCAT---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 156 ~~~~~hpll~---~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++++|||++. ....++|||+.+++ .++++||||||||||||||+++...+|+|+|+++|
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~~--------------~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~ 63 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLGS--------------GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP 63 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEcC--------------CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc
Confidence 3566788874 34679999999986 27999999999999999999999999999999986
No 22
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=6.3e-14 Score=117.34 Aligned_cols=60 Identities=35% Similarity=0.545 Sum_probs=49.0
Q ss_pred ccccCcccCC-CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 157 LESLYPCATG-DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 157 ~~~~hpll~~-~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
.++|||++.. ...+++|++.++. ..+ +.++|+||||+||||+||+++++++|||+|+|||
T Consensus 3 ~~~~hpll~~~~~~~v~~~~~~~~-----~~~-------~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vp 63 (204)
T cd03282 3 RDSRHPILDRDKKNFIPNDIYLTR-----GSS-------RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVP 63 (204)
T ss_pred ccccCCeEeccCCcEEEeeeEEee-----CCC-------cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 4567888752 2467788766653 333 8999999999999999999999999999999987
No 23
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=9.6e-14 Score=117.68 Aligned_cols=62 Identities=39% Similarity=0.621 Sum_probs=50.2
Q ss_pred EeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 155 SALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 155 ~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++.++|||++.. ...++|||+.+. +..+ ++++|+||||+||||+||+++++++|||+|+|||
T Consensus 2 ~i~~~rHPlle~~~~~~~v~n~i~~~-----~~~g-------~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 2 LIKEGRHPMIESLLDKSFVPNDIHLS-----AEGG-------YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred eeecccCCEEeccCCCCEEEEeEEEE-----ecCC-------cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456678888742 236788876665 3334 8999999999999999999999999999999987
No 24
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.38 E-value=2e-13 Score=128.67 Aligned_cols=169 Identities=14% Similarity=0.214 Sum_probs=114.3
Q ss_pred CCCCeEEEEeeecC-ccccccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhhh-
Q psy13262 28 CPSGYTVISKTVDQ-DTDADMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLDS- 101 (229)
Q Consensus 28 ~p~g~~~is~t~~~-d~~a~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~s- 101 (229)
++++.=+++.-.+. |.++--|.|+ |+++ |-.++++|++++ ++.|++.|..++.. ..++++|+......+.
T Consensus 170 ~~pDlLLLDEPTNHLD~~~i~WLe~--~L~~~~gtviiVSHDR~F--Ld~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~ 245 (530)
T COG0488 170 EEPDLLLLDEPTNHLDLESIEWLED--YLKRYPGTVIVVSHDRYF--LDNVATHILELDRGKLTPYKGNYSSYLEQKAER 245 (530)
T ss_pred cCCCEEEEcCCCcccCHHHHHHHHH--HHHhCCCcEEEEeCCHHH--HHHHhhheEEecCCceeEecCCHHHHHHHHHHH
Confidence 34445555554443 3466789986 5555 889999999998 88999999999876 8888999886654432
Q ss_pred ----------hhhhhhhcceeeeeccccccc--chhhhhhHHHHHHhC-CC------ccce-EecC----CCCCceEEec
Q psy13262 102 ----------DQGQICERGGVVDYKPQQSNN--TIFSQRNILKDMYQQ-GV------CVPT-FLGL----EEPHPYISAL 157 (229)
Q Consensus 102 ----------~qt~l~e~~~~v~l~~l~~~~--~~~~~~d~l~~~~~~-~~------~~P~-~~~~----~~~~~~i~~~ 157 (229)
+++.+.+.+.|++.....++. ++.++.+.+.++... .. ..|. +... ....+++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~ 325 (530)
T COG0488 246 LRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFE 325 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEe
Confidence 345555557777665554444 556666655555421 11 1111 1221 1235677777
Q ss_pred cccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 158 ESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 158 ~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
++ ...|-+..+++.+++|.+.+| ++++|+||||+|||||||++
T Consensus 326 ~~-------~~~y~~~~~l~~~~s~~i~~g-------~riaiiG~NG~GKSTLlk~l 368 (530)
T COG0488 326 NV-------SKGYDGGRLLLKDLSFRIDRG-------DRIAIVGPNGAGKSTLLKLL 368 (530)
T ss_pred cc-------ccccCCCceeecCceEEecCC-------CEEEEECCCCCCHHHHHHHH
Confidence 66 233334458999999999999 99999999999999999988
No 25
>KOG0927|consensus
Probab=99.10 E-value=3e-11 Score=112.05 Aligned_cols=158 Identities=22% Similarity=0.306 Sum_probs=94.0
Q ss_pred ccccccccceeeEeec-cE--EEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhh-----------hhhhh
Q psy13262 42 DTDADMWRESAFFLRK-TR--YLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLD-----------SDQGQ 105 (229)
Q Consensus 42 d~~a~~~qe~~~~~rk-gR--yv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~-----------s~qt~ 105 (229)
|.+|..|.|. ++.+ .| .|+.+|.+.+ ++|+|++|+.+..+ ..+-++|..+-...+ .+|+.
T Consensus 253 DleA~~wLee--~L~k~d~~~lVi~sh~QDf--ln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~ 328 (614)
T KOG0927|consen 253 DLEAIVWLEE--YLAKYDRIILVIVSHSQDF--LNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQ 328 (614)
T ss_pred CHHHHHHHHH--HHHhccCceEEEEecchhh--hhhHhhhhheecccceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhH
Confidence 5688999986 6666 55 7777777766 89999999999888 344566665444322 22222
Q ss_pred hhhcceeeeeccc---ccccchhhhhhHHHHHHhCCCccceEec-------C--C-CCCceEEeccccCcccCCCceeeC
Q psy13262 106 ICERGGVVDYKPQ---QSNNTIFSQRNILKDMYQQGVCVPTFLG-------L--E-EPHPYISALESLYPCATGDQTYIP 172 (229)
Q Consensus 106 l~e~~~~v~l~~l---~~~~~~~~~~d~l~~~~~~~~~~P~~~~-------~--~-~~~~~i~~~~~~hpll~~~~~~vp 172 (229)
+.....++..... ....++.+..+.+..+...+.......+ . + .++|++...+. ...|-+
T Consensus 329 i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv-------~F~y~~ 401 (614)
T KOG0927|consen 329 IAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNV-------SFGYSD 401 (614)
T ss_pred HHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEecc-------ccCCCC
Confidence 2222333321111 1122233333333333332322211111 1 1 24667766654 234444
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
+-..+.+++|.++.+ ..++++||||+|||||||++ +.+
T Consensus 402 ~~~iy~~l~fgid~~-------srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 402 NPMIYKKLNFGIDLD-------SRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cchhhhhhhcccCcc-------cceeEecCCCCchhhhHHHHhhcc
Confidence 546778888999888 99999999999999999988 443
No 26
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.07 E-value=1.9e-10 Score=92.64 Aligned_cols=51 Identities=31% Similarity=0.518 Sum_probs=44.0
Q ss_pred ccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHh----------cCCCcc
Q psy13262 159 SLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ----------MENPQL 228 (229)
Q Consensus 159 ~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~----------~G~~v~ 228 (229)
.+||++ ++||++.+.+ .+..+||||||+||||+||+++++..|++ +|++++
T Consensus 5 ~~~~~~-----~~~~~i~~~~--------------~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~ 65 (162)
T cd03227 5 GRFPSY-----FVPNDVTFGE--------------GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVA 65 (162)
T ss_pred CCCCEE-----EeccEEecCC--------------CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcce
Confidence 467754 6899888875 26999999999999999999999999999 998875
No 27
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=3.6e-10 Score=109.31 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=96.1
Q ss_pred CCCeEEEEeeecCcccc--ccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhh---
Q psy13262 29 PSGYTVISKTVDQDTDA--DMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTL--- 99 (229)
Q Consensus 29 p~g~~~is~t~~~d~~a--~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~--- 99 (229)
.+.+-+++.-..+ +|. ..|.++ ++++ +..++.+|+... +..++..+..+... ...+++|..+....
T Consensus 167 ~P~lLLLDEPtn~-LD~~~~~~L~~--~L~~~~~tviivsHd~~~--l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~ 241 (638)
T PRK10636 167 RSDLLLLDEPTNH-LDLDAVIWLEK--WLKSYQGTLILISHDRDF--LDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATR 241 (638)
T ss_pred CCCEEEEcCCCCc-CCHHHHHHHHH--HHHhCCCeEEEEeCCHHH--HHHhcCEEEEEeCCEEEEecCCHHHHHHHHHHH
Confidence 3456667766665 544 445553 3333 677777777664 45566666666655 33466666654322
Q ss_pred --------hhhhhhhhhcceeeeeccccc--ccchhhhhhHHHHHHhCCC----ccceEec---CCCCCceEEeccccCc
Q psy13262 100 --------DSDQGQICERGGVVDYKPQQS--NNTIFSQRNILKDMYQQGV----CVPTFLG---LEEPHPYISALESLYP 162 (229)
Q Consensus 100 --------~s~qt~l~e~~~~v~l~~l~~--~~~~~~~~d~l~~~~~~~~----~~P~~~~---~~~~~~~i~~~~~~hp 162 (229)
+.++..+.+...+++.....+ ...+.++.+.+..+..... ..+.+.. .....+++++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--- 318 (638)
T PRK10636 242 LAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKV--- 318 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCCceEEEEee---
Confidence 223334444455553211111 1222344444433321110 0111221 1113456777765
Q ss_pred ccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 163 CATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 163 ll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 319 -----~~~y~~~~il~~isl~i~~G-------e~~~l~G~NGsGKSTLlk~l~ 359 (638)
T PRK10636 319 -----SAGYGDRIILDSIKLNLVPG-------SRIGLLGRNGAGKSTLIKLLA 359 (638)
T ss_pred -----EEEeCCeeeeccceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 34457778999999999999 999999999999999999984
No 28
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.93 E-value=1.4e-09 Score=92.50 Aligned_cols=50 Identities=24% Similarity=0.378 Sum_probs=44.3
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++|+++++ .-.+.+..+|++++|+|++| ++|+|+||||+|||||||+++
T Consensus 29 ~~li~l~~v--------~v~r~gk~iL~~isW~V~~g-------e~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 29 EPLIELKNV--------SVRRNGKKILGDLSWQVNPG-------EHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred cceEEecce--------EEEECCEeeccccceeecCC-------CcEEEECCCCCCHHHHHHHHh
Confidence 467888776 45667889999999999999 999999999999999999984
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.3e-09 Score=93.70 Aligned_cols=51 Identities=33% Similarity=0.520 Sum_probs=42.4
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
+.++++++ .-.+.+...|.+++|++++| +.++|+||||+|||||+|++ ||+
T Consensus 3 ~~i~v~nl--------~v~y~~~~vl~~i~l~v~~G-------~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 3 PMIEVENL--------TVSYGNRPVLEDISLSVEKG-------EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEeee--------EEEECCEeeeeccEEEEcCC-------cEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677765 44566557999999999999 99999999999999999988 543
No 30
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.89 E-value=1.7e-09 Score=104.66 Aligned_cols=167 Identities=13% Similarity=0.179 Sum_probs=89.9
Q ss_pred CCCeEEEEeeecCcccc--ccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhh--
Q psy13262 29 PSGYTVISKTVDQDTDA--DMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLD-- 100 (229)
Q Consensus 29 p~g~~~is~t~~~d~~a--~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~-- 100 (229)
++..-+++.-..+ +|. .-|.++ ++++ +..++.+|+... +..++..+..+... ...+++|..+....+
T Consensus 174 ~P~lLLLDEPt~~-LD~~~~~~L~~--~L~~~~~tvlivsHd~~~--l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~ 248 (635)
T PRK11147 174 NPDVLLLDEPTNH-LDIETIEWLEG--FLKTFQGSIIFISHDRSF--IRNMATRIVDLDRGKLVSYPGNYDQYLLEKEEA 248 (635)
T ss_pred CCCEEEEcCCCCc-cCHHHHHHHHH--HHHhCCCEEEEEeCCHHH--HHHhcCeEEEEECCEEEEecCCHHHHHHHHHHH
Confidence 4566777776666 544 334443 3333 677777777664 44555555666555 234566665433221
Q ss_pred ---------hhhhhhhhcceeeeecccccccchhhhhhHHHHHH--hCC----CccceEecC---CCCCceEEeccccCc
Q psy13262 101 ---------SDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMY--QQG----VCVPTFLGL---EEPHPYISALESLYP 162 (229)
Q Consensus 101 ---------s~qt~l~e~~~~v~l~~l~~~~~~~~~~d~l~~~~--~~~----~~~P~~~~~---~~~~~~i~~~~~~hp 162 (229)
.+++.+.....+++...........++.+.+..+. ... ...+.+... ....+++++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--- 325 (635)
T PRK11147 249 LRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAKMQVEEASRSGKIVFEMENV--- 325 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCceeEEeCCCCCCCCceEEEeee---
Confidence 12223323333432211000111133333332221 100 001112111 122456777665
Q ss_pred ccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 163 CATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 163 ll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 326 -----~~~~~~~~il~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~l~ 366 (635)
T PRK11147 326 -----NYQIDGKQLVKDFSAQVQRG-------DKIALIGPNGCGKTTLLKLML 366 (635)
T ss_pred -----EEEECCeEEEcCcEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 34457778999999999999 999999999999999999984
No 31
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.88 E-value=2.8e-09 Score=92.00 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=37.4
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.-.|++..++++++|++..| ++++|.||||||||||||+++
T Consensus 9 s~~y~~~~il~~ls~~i~~G-------~i~~iiGpNG~GKSTLLk~l~ 49 (258)
T COG1120 9 SFGYGGKPILDDLSFSIPKG-------EITGILGPNGSGKSTLLKCLA 49 (258)
T ss_pred EEEECCeeEEecceEEecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 34567899999999999999 999999999999999999984
No 32
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.78 E-value=1e-08 Score=87.94 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=42.7
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.|.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 4 ~~~l~~~~l--------~~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 4 PPKMEARGL--------SFFYGDFQALHDISLEFEQN-------QVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CcEEEEeee--------EEEECCeeeecceeEEEeCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 467777765 33456667999999999999 9999999999999999999953
No 33
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.76 E-value=1.4e-08 Score=85.85 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=42.1
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++++++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 5 ~~~i~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 5 SPLLQLQNV--------GYLAGDAKILNNISFSLRAG-------EFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred CceEEEecc--------EEeeCCceeeeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 356777665 33346667999999999999 9999999999999999999854
No 34
>KOG0066|consensus
Probab=98.75 E-value=4e-09 Score=96.37 Aligned_cols=156 Identities=13% Similarity=0.258 Sum_probs=91.8
Q ss_pred CccccccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhhhhhhhhhhc----cee
Q psy13262 41 QDTDADMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLDSDQGQICER----GGV 112 (229)
Q Consensus 41 ~d~~a~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~s~qt~l~e~----~~~ 112 (229)
-|+.|..|.|+ |++. ..+++++++..+ ++.||+||.+++.. ..+.++|+.+...|...+....+. +.-
T Consensus 443 LDLNAVIWLdN--YLQgWkKTLLIVSHDQgF--LD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~ 518 (807)
T KOG0066|consen 443 LDLNAVIWLDN--YLQGWKKTLLIVSHDQGF--LDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQ 518 (807)
T ss_pred cccceeeehhh--HHhhhhheeEEEecccch--HHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999997 6665 778888887766 79999999999877 777889988777665443332221 000
Q ss_pred eeecccccccchhhhhhHHHHHH---h----------CCCccceE-----------ecC---CCCCceEEeccccCcccC
Q psy13262 113 VDYKPQQSNNTIFSQRNILKDMY---Q----------QGVCVPTF-----------LGL---EEPHPYISALESLYPCAT 165 (229)
Q Consensus 113 v~l~~l~~~~~~~~~~d~l~~~~---~----------~~~~~P~~-----------~~~---~~~~~~i~~~~~~hpll~ 165 (229)
++--...--+..+++-..-.++. + .+.-.|++ ..+ ....|++-+.++
T Consensus 519 LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~V------ 592 (807)
T KOG0066|consen 519 LKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDV------ 592 (807)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccc------
Confidence 00000000111122111111111 0 00011111 111 112355555443
Q ss_pred CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 166 ~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
...|.+.+..+..++|-|... ++++|+||||-||||||+.+
T Consensus 593 -tFgy~gqkpLFkkldFGiDmd-------SRiaIVGPNGVGKSTlLkLL 633 (807)
T KOG0066|consen 593 -TFGYPGQKPLFKKLDFGIDMD-------SRIAIVGPNGVGKSTLLKLL 633 (807)
T ss_pred -cccCCCCCchhhccccccccc-------ceeEEECCCCccHHHHHHHH
Confidence 234556677888888888877 89999999999999999976
No 35
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=2.7e-08 Score=86.28 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=41.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...++....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 19 ~~l~~~nl--------~~~~~~~~il~~vsl~i~~G-------e~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 19 IALSTKDL--------HVYYGKKEAIKGIDMQFEKN-------KITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred eEEEEeeE--------EEEECCeeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 46777765 33346667999999999999 9999999999999999999954
No 36
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=2.4e-08 Score=83.74 Aligned_cols=50 Identities=30% Similarity=0.408 Sum_probs=41.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 10 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 10 PLLAAHAL--------AFSRNEEPVFGPLDFHVDAG-------EALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred ceEEEeeE--------EEecCCceeeecceEEECCC-------CEEEEEcCCCCCHHHHHHHHhC
Confidence 56777665 33456667999999999999 9999999999999999999953
No 37
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=2.5e-08 Score=86.45 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=43.0
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.+++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 19 ~~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 19 EHILEVKDL--------SIYYGEKRAVNDISMDIEKH-------AVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CceEEEEEE--------EEEeCCceeeeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 356777766 33456678999999999999 9999999999999999999944
No 38
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.70 E-value=2.6e-08 Score=86.52 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=41.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 6 ~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 6 NLVDMRGV--------SFTRGNRCIFDNISLTVPRG-------KITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred ceEEEeCe--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 45666665 33456677899999999999 9999999999999999999953
No 39
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.70 E-value=2.4e-08 Score=85.66 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=40.6
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 2 ~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 51 (253)
T TIGR02323 2 PLLQVSGL--------SKSYGGGKGCRDVSFDLYPG-------EVLGIVGESGSGKSTLLGCLAG 51 (253)
T ss_pred ceEEEeee--------EEEeCCceEeecceEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 34566554 33446667899999999999 9999999999999999999854
No 40
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.69 E-value=2.4e-08 Score=85.03 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 10 VSFDGFKALNDLSLYVDPG-------ELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred EEcCCeEEeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 3456667899999999999 9999999999999999999953
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=2.2e-08 Score=84.18 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRG-------EIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EECCEEeeeceeEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 346667899999999999 9999999999999999999943
No 42
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.69 E-value=2.9e-08 Score=82.82 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=36.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 10 ~~~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 10 CVRGGRVLFSGLSFTLAAG-------EALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EEECCeEEEeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 3456777899999999999 9999999999999999999844
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=2.3e-08 Score=83.55 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=34.8
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 10 YGSVRALDDLSLTVEPG-------EFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred eCCeeeecceeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 45667899999999999 999999999999999999984
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.68 E-value=2.7e-08 Score=83.47 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=38.7
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.++....|+++++++.+| ++++|.||+|||||||||++-.
T Consensus 9 ~K~fg~~~VLkgi~l~v~~G-------evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKG-------EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEEeCCeEEecCcceeEcCC-------CEEEEECCCCCCHHHHHHHHHC
Confidence 56778889999999999999 9999999999999999999843
No 45
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.68 E-value=2.4e-08 Score=84.97 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=35.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKG-------EIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred EECCEEEEeccceEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 346667899999999999 9999999999999999999944
No 46
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.67 E-value=3.1e-08 Score=87.55 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=41.0
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 3 ~~i~~~~l--------~~~~~~~~~l~~vsl~i~~G-------e~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 3 VAIDLVGV--------SKSYGDKVVVNDLSFTIARG-------ECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred cEEEEEeE--------EEEeCCeEEEcceeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 34566655 34456677999999999999 999999999999999999994
No 47
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.4e-08 Score=85.83 Aligned_cols=50 Identities=30% Similarity=0.298 Sum_probs=42.2
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 12 ~~l~i~nl--------~~~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 12 IIISLQNV--------TISYGTFEAVKNVFCDIPRG-------KVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred ceEEEEeE--------EEEECCEEEEcceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 56777765 34456677999999999999 9999999999999999999943
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=3e-08 Score=84.38 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=36.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 10 ~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 10 KRFGDFVALDDVSLDIPSG-------ELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred EEECCEEeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 3456677999999999999 9999999999999999999943
No 49
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.67 E-value=2.3e-08 Score=83.75 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=32.9
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||+|||||||+++
T Consensus 17 ~~il~~~s~~i~~G-------~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 17 VQALKGVSLSIEKG-------EFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred eeEEeeeEEEEcCC-------CEEEEEcCCCCCHHHHHHHHh
Confidence 57899999999999 999999999999999999994
No 50
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.1e-08 Score=84.96 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 12 ~~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 12 VYYGSNHVIKGVDLKIPQN-------GVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred EEeCCeeeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 3456677999999999999 9999999999999999999943
No 51
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.4e-08 Score=85.08 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=42.3
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.++++++ ...++....+++++|++.+| ++++|+||||+|||||||+++.+
T Consensus 11 ~~l~i~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 11 EVYQINGM--------NLWYGQHHALKNINLSIPEN-------EVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred ceEEEeeE--------EEEECCeeeEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence 56777765 33456667999999999999 99999999999999999999543
No 52
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.2e-08 Score=84.78 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=40.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 4 ~~l~~~~l--------~~~~~~~~~l~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 4 PILQVSDL--------SVYYNKKKALNSVSLDFYPN-------EITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred ceEEEEee--------EEEECCeeeeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 45566654 33456667899999999999 999999999999999999994
No 53
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=2.5e-08 Score=83.11 Aligned_cols=39 Identities=31% Similarity=0.390 Sum_probs=35.2
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 10 ~~~~~~l~~v~~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 10 FGRVTALDDISFSVEKG-------EIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred ECCEEEEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 45667899999999999 9999999999999999999953
No 54
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.4e-08 Score=85.19 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=40.9
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 12 ~~l~~~~l--------~~~~~~~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 12 SKIQVRNL--------NFYYGKFHALKNINLDIAKN-------QVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred ceEEEEEE--------EEEeCCeEEeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 34566554 33346667899999999999 9999999999999999999953
No 55
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=2.4e-08 Score=84.72 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=35.3
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 9 ~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 9 SFGGRTVLKGVDLDVRRG-------EILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 345667899999999999 999999999999999999994
No 56
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.67 E-value=2.7e-08 Score=83.70 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=32.8
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++-
T Consensus 19 ~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 19 KALDDVSFSIKKG-------ETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred eeecCceeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999 9999999999999999999943
No 57
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.67 E-value=3.3e-08 Score=85.31 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=41.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++++.++ ...++....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 3 ~~l~~~nl--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 52 (262)
T PRK09984 3 TIIRVEKL--------AKTFNQHQALHAVDLNIHHG-------EMVALLGPSGSGKSTLLRHLSG 52 (262)
T ss_pred cEEEEeeE--------EEEeCCeEEEecceEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence 45666655 34456778999999999999 9999999999999999999953
No 58
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.67 E-value=2.8e-08 Score=82.89 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~~l~~~s~~i~~G-------~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 9 SFGDFHVLKGIDLTVKKG-------EVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred EECCeEeecCceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 346667899999999999 9999999999999999999943
No 59
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.9e-08 Score=84.47 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=41.4
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 6 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 6 AIIETENL--------NLFYTDFKALNNINIKILKN-------SITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred ceEEEeee--------EEEeCCceeecceeeEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 45667665 33446667899999999999 9999999999999999999843
No 60
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.4e-08 Score=84.54 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=35.8
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 12 ~~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 12 SFGQVEVLDGVNLEIPDN-------TITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred EECCeeeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 346667899999999999 9999999999999999999954
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.66 E-value=2.6e-08 Score=83.09 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 9 RFGNVTALDDLNLDIADG-------EFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EECCeeeeeceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 346667899999999999 9999999999999999999943
No 62
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.3e-08 Score=83.80 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=32.8
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||+|||||||+++
T Consensus 22 ~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 22 TDVLHNVSFSIGEG-------EMMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred eeeEEeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 36899999999999 999999999999999999994
No 63
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.66 E-value=3.3e-08 Score=84.03 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=36.1
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 10 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 10 AYGARRALDDVSFTVRPG-------EFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 356677999999999999 9999999999999999999953
No 64
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=4.2e-08 Score=84.92 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=42.2
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.+++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 8 ~~~l~i~~v--------~~~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 8 ETVLRTENL--------NVYYGSFLAVKNVWLDIPKN-------QITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred ceEEEEeee--------EEEECCEEEeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 356677665 33456677899999999999 9999999999999999999853
No 65
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=3.1e-08 Score=83.88 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=32.9
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 19 ~il~~~s~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 19 TALKDVSLSVPKG-------EIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred eeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999 9999999999999999999843
No 66
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=3.9e-08 Score=84.31 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=41.5
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 4 ~~l~~~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 4 KIITSSDV--------HLFYGKFEALKGIDLDFNQN-------EITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred ceEEEEeE--------EEEECCeeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 45666654 33456678999999999999 9999999999999999999954
No 67
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=2.6e-08 Score=83.68 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=33.4
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 17 ~~il~~vs~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 17 VTALEDISLSVEEG-------EFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred eEEEeceeEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999 9999999999999999999943
No 68
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.66 E-value=2.9e-08 Score=83.84 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=38.2
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+|+....+.+++|++..| +++.|.||||+||||+||+|.
T Consensus 10 ~~~YG~~~~L~gvsl~v~~G-------eiv~llG~NGaGKTTlLkti~ 50 (237)
T COG0410 10 SAGYGKIQALRGVSLEVERG-------EIVALLGRNGAGKTTLLKTIM 50 (237)
T ss_pred eecccceeEEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 56788889999999999999 999999999999999999993
No 69
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.66 E-value=2.9e-08 Score=83.18 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.9
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++-
T Consensus 19 ~il~~~sl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 19 QAVDGVSFTVKPG-------EVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred eeecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999 9999999999999999999954
No 70
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.66 E-value=3e-08 Score=85.75 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=41.2
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 11 ~~l~i~~l--------~~~~~~~~il~~isl~i~~G-------e~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 11 TPLLLNAV--------SKRYGERTVLNQLDLHIPAG-------QFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred CcEEEEEE--------EEEECCcceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 55677665 33456667899999999999 999999999999999999984
No 71
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.66 E-value=3.8e-08 Score=84.20 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=35.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 12 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 12 KFHGQTVLHGIDLEVKPG-------EVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred EECCeeeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 456667999999999999 9999999999999999999843
No 72
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.66 E-value=3.4e-08 Score=85.07 Aligned_cols=41 Identities=29% Similarity=0.422 Sum_probs=36.3
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 12 ~~~~~~~vl~~vs~~i~~G-------e~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 12 VSFGQRRVLSDVSLELKPG-------KILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EEECCceEEEeEEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 3456667999999999999 9999999999999999999843
No 73
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=3.9e-08 Score=84.32 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=41.2
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
|.+++.++ ...++....+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 3 ~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 3 IKMESKNL--------NLWYGEKQALNDINLPIYEN-------KITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred cEEEEEEe--------EEEECCeeeeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 55666654 33346667899999999999 9999999999999999999954
No 74
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=3.7e-08 Score=84.39 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 11 ~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 11 FWYGDFHALKGISMEIEEK-------SVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEECCEeEEeeeeEEEeCC-------CEEEEECCCCCCHHHHHHHHhh
Confidence 3456667899999999999 9999999999999999999954
No 75
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.66 E-value=3.6e-08 Score=88.64 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=42.6
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 40 ~~i~i~nl--------~k~y~~~~~l~~is~~i~~G-------ei~gLlGpNGaGKSTLl~~L~ 88 (340)
T PRK13536 40 VAIDLAGV--------SKSYGDKAVVNGLSFTVASG-------ECFGLLGPNGAGKSTIARMIL 88 (340)
T ss_pred eeEEEEEE--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 56777766 44567778999999999999 999999999999999999984
No 76
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=3.1e-08 Score=85.43 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.2
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 10 DYGGKPALEDINLTLESG-------ELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred EeCCeeeEeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 345667899999999999 999999999999999999994
No 77
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.65 E-value=3.1e-08 Score=79.82 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+.+++|++++| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~vl~~i~~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 9 RFGGVKALDGVSLSVRRG-------EVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred EECCeEEEeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 346667899999999999 9999999999999999999943
No 78
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.65 E-value=2.9e-08 Score=83.86 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 9 ~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 9 YYGQSHILRGVSLEVPKG-------EVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred EeCCeEEecceeeEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 456678999999999999 999999999999999999994
No 79
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=4.3e-08 Score=85.57 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=43.8
Q ss_pred CCceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 150 PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 150 ~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+.+.+.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 18 ~~~~l~i~nl--------~~~~~~~~il~~vs~~i~~G-------e~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 18 AAPAMAAVNL--------TLGFAGKTVLDQVSMGFPAR-------AVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred cCcEEEEeeE--------EEEECCEEEeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 3567777776 44567778999999999999 999999999999999999994
No 80
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=4.3e-08 Score=85.43 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=42.1
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 18 ~~~l~~~nl--------~~~~~~~~~l~~vs~~i~~G-------e~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 18 HSVFEVEGV--------KVFYGGFLALVDVHLKIPAK-------KIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred CceEEEeeE--------EEEeCCeEEEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 457777765 33456667899999999999 999999999999999999995
No 81
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.65 E-value=3e-08 Score=82.52 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=35.5
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~l~~~~~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 10 YGKKRVLDDISLHVKKG-------EIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred ECCeEeEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 46667999999999999 9999999999999999999953
No 82
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=4e-08 Score=84.30 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=41.5
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++++.++ ...+++...+.+++|++++| ++++|+||||+|||||||+++-
T Consensus 4 ~~l~~~~l--------~~~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 4 PLLSVSGL--------MMRFGGLLAVNNVNLEVREQ-------EIVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred ceEEEeeE--------EEEECCEEEEEeeeeEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence 35666655 33456778999999999999 9999999999999999999843
No 83
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.65 E-value=2.9e-08 Score=83.26 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=34.9
Q ss_pred eCC--eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPN--STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~--~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++ ...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 10 ~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 10 YKKGTKPAVDDLSLNVYKG-------EIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred eCCCCceeecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 454 57899999999999 9999999999999999999953
No 84
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.65 E-value=3.9e-08 Score=87.14 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=41.5
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|.||||+|||||||+++
T Consensus 6 ~~i~i~~l--------~k~~~~~~~l~~vsl~i~~G-------ei~gllGpNGaGKSTLl~~l~ 54 (306)
T PRK13537 6 APIDFRNV--------EKRYGDKLVVDGLSFHVQRG-------ECFGLLGPNGAGKTTTLRMLL 54 (306)
T ss_pred ceEEEEeE--------EEEECCeEEEecceEEEeCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 35666665 44557778999999999999 999999999999999999984
No 85
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.65 E-value=4.3e-08 Score=82.72 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++.
T Consensus 24 ~~l~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 24 SILTGVELVVKRG-------ETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred EEEeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999 9999999999999999999953
No 86
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=4e-08 Score=84.34 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=41.5
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 5 ~~i~~~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 5 IILSTKNL--------NLWYGEKHALYDITISIPKN-------RVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred ceEEEeee--------EEEECCeeeeeeeEEEECCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence 45666654 33456778999999999999 9999999999999999999953
No 87
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=3.9e-08 Score=84.75 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=41.2
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 11 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 11 PQIKVENL--------NLWYGEKQALKNVSMQIPKN-------SVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeEEEeee--------EEEeCCeeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 45666655 33346667899999999999 9999999999999999999953
No 88
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=3.4e-08 Score=80.55 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=34.6
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~l~~i~~~i~~G-------~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 10 YGQKTVLNDVSLNIEAG-------EIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred ECCeEEEeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45567899999999999 999999999999999999994
No 89
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=3.8e-08 Score=84.24 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=36.1
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 11 ~~~~~~~~l~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 11 AYYGEKKAVKNVTMKIFKN-------QITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EEeCCceeEeeeeEeecCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 3446667899999999999 9999999999999999999953
No 90
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=3.5e-08 Score=83.86 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=35.4
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 14 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 14 HYGKIQALHEVSLHINQG-------EIVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred eeCCceeeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence 346667999999999999 999999999999999999994
No 91
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.64 E-value=3.4e-08 Score=83.51 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.9
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 10 YGKRKVVNGVSLSVKQG-------EIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred eCCEEeeccceeEecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 46667899999999999 999999999999999999994
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=4.5e-08 Score=83.34 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=35.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 12 ~~~~~~~l~~~sl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 12 AYKGRRVVEDVSLTVNSG-------EIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred EeCCEEEEeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 346667999999999999 9999999999999999999954
No 93
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.64 E-value=3.5e-08 Score=81.69 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=35.3
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 9 ~~~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 9 SRGERMLFEGLSFTLNAG-------EALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred EECCEEEEeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 346677899999999999 999999999999999999984
No 94
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.64 E-value=3.9e-08 Score=82.56 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=33.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 18 ~~~l~~isl~i~~G-------~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 18 TRVLKGVSLSIGKG-------EIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred eEeEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999 9999999999999999999943
No 95
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.64 E-value=3.4e-08 Score=83.71 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=34.8
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 10 FGGLVALDDVSFSVRPG-------EIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred ECCEEEecCceEEecCC-------cEEEEECCCCCCHHHHHHHHc
Confidence 45667899999999999 999999999999999999994
No 96
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=5.2e-08 Score=83.38 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=36.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 11 ~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 11 LFYGENQALKSINLPIPAR-------QVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred EEECCeeeeecceEEecCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 3456667999999999999 9999999999999999999954
No 97
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.64 E-value=4.5e-08 Score=81.45 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=35.3
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+.+++|++.+| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 10 ERDERILFSGLSFTLNAG-------ELVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred EECCEEEEecceEEECCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 346667899999999999 999999999999999999984
No 98
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.64 E-value=3.1e-08 Score=83.14 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=34.9
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 10 YGKSQILFGVSLTVPEG-------EIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred cCCeeEeeeeeEEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence 45567899999999999 9999999999999999999943
No 99
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.63 E-value=4.3e-08 Score=81.28 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=35.8
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+.+++|++++| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~il~~~s~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 10 DYHDQPLLQQISFHLPAG-------GLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EeCCeeEEeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 346667999999999999 9999999999999999999843
No 100
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=4.8e-08 Score=80.63 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=33.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 20 ~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 20 RQLLNNISGYVKPG-------TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eEeEEccEEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999 9999999999999999999963
No 101
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.63 E-value=3.3e-08 Score=83.36 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=35.6
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++-+
T Consensus 10 ~~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 10 YGDKHALKDISLDIPKG-------EITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred cCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence 45667899999999999 99999999999999999999443
No 102
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.63 E-value=4.3e-08 Score=81.86 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=33.7
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 14 ~~~il~~is~~i~~G-------~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 14 GVAALHDVSLHIRKG-------EFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CceeecceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999 9999999999999999999843
No 103
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=4.5e-08 Score=84.29 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=35.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 13 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 13 YYGSFHAVEDVNLNIEPR-------SVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred EECCEeeeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence 356667899999999999 9999999999999999999954
No 104
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.63 E-value=4.2e-08 Score=82.15 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++-
T Consensus 17 ~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 17 PALDNLNFHITKG-------EMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred eEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999 9999999999999999999943
No 105
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.63 E-value=3.7e-08 Score=83.82 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=34.0
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+...+.+++|++.+| ++++|+||||+|||||||+++.
T Consensus 14 ~~~il~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 14 GKQALKNINLNINPG-------EFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CcceeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 557899999999999 9999999999999999999943
No 106
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=3.9e-08 Score=79.76 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=34.8
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~l~~~~~~i~~G-------e~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 10 YGKKTALDDISLTVEKG-------EIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred ECCeeeeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 35556899999999999 9999999999999999999944
No 107
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=5e-08 Score=83.59 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=36.4
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.++....+++++|++.+| ++++|+||||+|||||||+++-+
T Consensus 13 ~~~~~~~l~~~sl~i~~G-------e~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 13 SYGNYEALHGISLDFEEK-------ELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EECCeeeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhhc
Confidence 456677999999999999 99999999999999999999543
No 108
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=5.5e-08 Score=84.19 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=41.4
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 10 ~~l~i~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 10 TTFALRNV--------SFRVPGRTLLHPLSLTFPAG-------KVTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred ceEEEeeE--------EEEECCEEEEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 45666665 33456778999999999999 999999999999999999984
No 109
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.63 E-value=4.1e-08 Score=87.81 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=36.5
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.+++...+++++++++.| +.++|.|||||||||+||+|+.
T Consensus 10 ~K~yg~~~~l~~i~l~i~~G-------ef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDG-------EFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEcCCceeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 45566544999999999999 9999999999999999999954
No 110
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.62 E-value=5.5e-08 Score=84.37 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=41.8
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 18 ~~l~~~nl--------~~~~~~~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 18 IKMRARDV--------SVFYGEKQALFDVDLDIPEK-------TVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred ceEEEEeE--------EEEECCEEEEEEEEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 45666665 33456677999999999999 9999999999999999999954
No 111
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.62 E-value=5.7e-08 Score=83.18 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=41.1
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+.+++|++++| ++++|+||||+|||||||+++.
T Consensus 6 ~~l~~~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 6 PILEIKNL--------HASVNENEILKGLNLSINKG-------EIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred ceEEEEeE--------EEEeCCEEeeecceeEEcCC-------cEEEEECCCCCCHHHHHHHHcC
Confidence 45666655 33346667999999999999 9999999999999999999854
No 112
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=6.3e-08 Score=84.93 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=42.6
Q ss_pred CCceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 150 PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 150 ~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.+++.++ ...++....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 36 ~~~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 36 GKPHVVAKNF--------SIYYGEFEAVKKVNADILSK-------YVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CceEEEEeee--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 3466777665 33345567899999999999 9999999999999999999954
No 113
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.62 E-value=5e-08 Score=83.03 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~il~~~s~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 10 HFGPTQVLHNIDLNIDQG-------EVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred EECCeEEeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 346667899999999999 9999999999999999999943
No 114
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.61 E-value=3.6e-08 Score=81.93 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=34.7
Q ss_pred eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++ ...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~~l~~v~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 9 YKKGTEILDDLSLDLYAG-------EIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred eCCcCceeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 454 56899999999999 9999999999999999999943
No 115
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.61 E-value=5.5e-08 Score=83.78 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=40.4
Q ss_pred eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++.++ ...+++...+++++|++++| ++++|.||||+|||||||+++-
T Consensus 6 ~l~~~~l--------~~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 6 LLSVRGL--------TKLYGPRKGCRDVSFDLYPG-------EVLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred eEEEeee--------EEEcCCceeeeeeeEEEeCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 4566554 33346667899999999999 9999999999999999999953
No 116
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=6.8e-08 Score=82.71 Aligned_cols=41 Identities=32% Similarity=0.494 Sum_probs=36.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 12 ~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 52 (252)
T PRK14272 12 IYYGDKQAVKNVNLDVQRG-------TVNALIGPSGCGKTTFLRAINR 52 (252)
T ss_pred EEECCEEeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 3456678999999999999 9999999999999999999954
No 117
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=6.7e-08 Score=82.89 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=35.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 13 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 13 HFGKNHAVKDVSMDFPEN-------SVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EeCCeeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 345667999999999999 9999999999999999999954
No 118
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.61 E-value=4.5e-08 Score=81.78 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=34.7
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 9 ~~~~~~l~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 9 YGGHPVLEDVSFEVKPG-------EFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred ECCEEeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 45567899999999999 999999999999999999984
No 119
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=6.5e-08 Score=84.85 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=42.3
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++.+++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 37 ~~~l~i~~l--------~~~~~~~~il~~is~~i~~G-------e~~~I~G~nGsGKSTLl~~l~G 87 (285)
T PRK14254 37 ETVIEARDL--------NVFYGDEQALDDVSMDIPEN-------QVTAMIGPSGCGKSTFLRCINR 87 (285)
T ss_pred CceEEEEEE--------EEEECCEeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 456666655 33456678999999999999 9999999999999999999953
No 120
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.60 E-value=4e-08 Score=79.71 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=35.7
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
....+++++||.+++| +.++||||.|||||||||+++.+
T Consensus 14 ~~a~il~~isl~v~~G-------e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 14 GDAKILNNISLSVRAG-------EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCCeeecceeeeecCC-------ceEEEeCCCCccHHHHHHHHHhc
Confidence 4557899999999999 99999999999999999999765
No 121
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.60 E-value=4.5e-08 Score=81.59 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=33.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 14 ~~il~~vs~~i~~G-------~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 14 RPALDDISLTIKKG-------EFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred eeeecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence 56899999999999 9999999999999999999943
No 122
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=4.8e-08 Score=82.98 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=34.8
Q ss_pred eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++ ...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 10 YPNGKKALKDVSLSINPG-------EFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred cCCccEEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 444 57899999999999 9999999999999999999943
No 123
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.60 E-value=5.6e-08 Score=84.76 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=35.6
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 10 ARRHRAILRDLSLRIEPG-------RVTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred EECCEeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 356677999999999999 999999999999999999994
No 124
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.60 E-value=4.7e-08 Score=81.59 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=34.6
Q ss_pred eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++ ...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~~l~~~sl~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 10 YPNGTAALDGINISISAG-------EFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred eCCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 443 46899999999999 9999999999999999999953
No 125
>PRK10908 cell division protein FtsE; Provisional
Probab=98.60 E-value=6e-08 Score=81.57 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 13 ~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 13 GGRQALQGVTFHMRPG-------EMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred CCCeEEeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 4457899999999999 9999999999999999999943
No 126
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.60 E-value=6.3e-08 Score=83.56 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 10 ~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 10 VRLGGRTLLDDVSLTLRPG-------EVVAILGPNGAGKSTLLRALSG 50 (258)
T ss_pred EEeCCeeeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 3456667899999999999 9999999999999999999943
No 127
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.60 E-value=4.8e-08 Score=81.84 Aligned_cols=40 Identities=30% Similarity=0.524 Sum_probs=35.7
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+.....+++++++..+| ++++|.||||+|||||||.+.
T Consensus 9 ~~~~Gr~ll~~vsl~~~pG-------ev~ailGPNGAGKSTlLk~Ls 48 (259)
T COG4559 9 YSLAGRRLLDGVSLDLRPG-------EVLAILGPNGAGKSTLLKALS 48 (259)
T ss_pred EEeecceeccCcceeccCC-------cEEEEECCCCccHHHHHHHhh
Confidence 3456678899999999999 999999999999999999873
No 128
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=6.8e-08 Score=82.30 Aligned_cols=40 Identities=30% Similarity=0.477 Sum_probs=35.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 11 ~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 11 FYGAHQALFDITLDCPQG-------ETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EECCeeeEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 346667999999999999 9999999999999999999953
No 129
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.59 E-value=5.1e-08 Score=83.65 Aligned_cols=40 Identities=33% Similarity=0.369 Sum_probs=35.6
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 9 RFGILTVLDGLNFSVAAG-------EKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred EeCCeeEEeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 345667899999999999 9999999999999999999943
No 130
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.59 E-value=5.5e-08 Score=76.88 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=34.3
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+.+++|++++| ++++|+||||+|||||+++++
T Consensus 10 ~~~~~~l~~~~~~~~~G-------e~~~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 10 YGGKLLLKDISLTINPG-------DRIGLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred ECCceEEEeeEEEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 45557899999999999 999999999999999999983
No 131
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.59 E-value=7e-08 Score=85.12 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=37.5
Q ss_pred ceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++ ....+++++|++++| ++++|.||||+|||||||+++
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~G-------ei~gllG~NGAGKTTllk~l~ 52 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPG-------EIFGLLGPNGAGKTTLLKILA 52 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCC-------eEEEEECCCCCCHHHHHHHHh
Confidence 45677 589999999999999 999999999999999999984
No 132
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.59 E-value=7.4e-08 Score=83.62 Aligned_cols=37 Identities=32% Similarity=0.359 Sum_probs=33.8
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 24 ~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 24 HQTVLNNVSLSLKSG-------ETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred ceeeEeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999 9999999999999999999853
No 133
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.59 E-value=7.1e-08 Score=82.51 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=35.0
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++....+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 10 FYGEKEALKNINLDIPKN-------QVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred EECCeeeecceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 345567899999999999 999999999999999999984
No 134
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=7.1e-08 Score=82.34 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=35.2
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 13 ~~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 13 SFGKEILKDISVKFEGG-------AIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred eCCeeeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 46667899999999999 9999999999999999999943
No 135
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=8.4e-08 Score=82.25 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=35.6
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+.+++|++.+| ++++|+||||+|||||||+++-
T Consensus 13 ~~~~~~il~~~s~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14249 13 FYHKHQVLKNINMDFPER-------QITAIIGPSGCGKSTLLRALNR 52 (251)
T ss_pred EECCeeEecceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 345667899999999999 9999999999999999999943
No 136
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.58 E-value=6.1e-08 Score=82.77 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=36.0
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++.+
T Consensus 10 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 10 SVEDKAILRGLNLEVRPG-------EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EeCCeeeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHcCC
Confidence 345667899999999999 99999999999999999999443
No 137
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=8.7e-08 Score=84.83 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=41.6
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+.+.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 44 ~~l~i~nl--------~~~~~~~~iL~~is~~i~~G-------e~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 44 AKLSVEDL--------DVYYGDDHALKGVSMDIPEK-------SVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred ceEEEEEE--------EEEeCCeeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 45666665 33456677999999999999 9999999999999999999953
No 138
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.58 E-value=6.7e-08 Score=88.76 Aligned_cols=41 Identities=29% Similarity=0.513 Sum_probs=36.9
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 s~~y~~~~vL~~vs~~i~~G-------eiv~liGpNGaGKSTLLk~La 50 (402)
T PRK09536 10 SVEFGDTTVLDGVDLSVREG-------SLVGLVGPNGAGKTTLLRAIN 50 (402)
T ss_pred EEEECCEEEEEeeEEEECCC-------CEEEEECCCCchHHHHHHHHh
Confidence 33457778999999999999 999999999999999999994
No 139
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=7.5e-08 Score=82.37 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++....+++++|++++| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 10 LFYGKKQALFDINMQIEQN-------KITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred EEECCEeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 3456667899999999999 9999999999999999999954
No 140
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=8.4e-08 Score=82.99 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=41.4
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+.+++|++++| ++++|+||||+|||||||+++.
T Consensus 15 ~~l~~~~l--------~~~~~~~~vl~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 15 QKSEVNKL--------NFYYGGYQALKNINMMVHEK-------QVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred ceEEEEEE--------EEEECCeeeeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence 34666655 33456678999999999999 9999999999999999999943
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=8.2e-08 Score=82.54 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=36.0
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 11 ~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 11 GYGTKRILNDLSLSLPTG-------KITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred EECCEEEEeeeeeEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 356678999999999999 9999999999999999999943
No 142
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=5.2e-08 Score=84.62 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=35.0
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 11 ~~~~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLS-------PVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred cCCcccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHcC
Confidence 45567899999999999 9999999999999999999843
No 143
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.57 E-value=6.9e-08 Score=80.18 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=35.2
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++++| ++++|+|+||+|||||||.++
T Consensus 9 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 9 ERDGRALFSGLSFTLAAG-------EALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred EeCCceeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 346667899999999999 999999999999999999984
No 144
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.57 E-value=8e-08 Score=83.17 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=36.7
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 14 ~~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~i~ 54 (265)
T PRK10253 14 TLGYGKYTVAENLTVEIPDG-------HFTAIIGPNGCGKSTLLRTLS 54 (265)
T ss_pred EEEECCEEEeeecceEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 34557778999999999999 999999999999999999984
No 145
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=6.7e-08 Score=83.44 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=42.3
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|.+.+.++ ...+++...+.+++|++.+| ++++|+||||+|||||||+++
T Consensus 8 ~~~i~~~~~--------~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 8 EDVFNISRL--------YLYINDKAILKDITIKIPNN-------SIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred hhheeeeeE--------EEecCCceeEeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 356666654 44467778999999999999 999999999999999999995
No 146
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.57 E-value=8.2e-08 Score=86.36 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=43.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++++++ .+.+++...++++++++++| +.+.|.||+||||||+||+||-
T Consensus 4 ~~l~i~~v--------~k~yg~~~av~~isl~i~~G-------ef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 4 PALEIRNV--------SKSFGDFTAVDDISLDIKKG-------EFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ceEEEEee--------eeecCCeeEEecceeeecCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 56777765 55677889999999999999 9999999999999999999964
No 147
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.2e-08 Score=80.08 Aligned_cols=37 Identities=32% Similarity=0.523 Sum_probs=33.7
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++.+.+++|++.+| +.+.|+||||+|||||||+++
T Consensus 13 ~e~~lf~~L~f~l~~G-------e~~~i~G~NG~GKTtLLRila 49 (209)
T COG4133 13 GERTLFSDLSFTLNAG-------EALQITGPNGAGKTTLLRILA 49 (209)
T ss_pred CcceeecceeEEEcCC-------CEEEEECCCCCcHHHHHHHHH
Confidence 4457889999999999 999999999999999999994
No 148
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.57 E-value=8.9e-08 Score=82.43 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=37.0
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 12 ~~~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 53 (257)
T PRK10619 12 HKRYGEHEVLKGVSLQANAG-------DVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 33456778999999999999 9999999999999999999854
No 149
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.57 E-value=7.7e-08 Score=83.67 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=41.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++++++ ...+++...+++++|++++| ++++|+|+||+|||||||+++-
T Consensus 23 ~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 23 VVFDTQNL--------NLWYGEDHALKNINLDIHEN-------EVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred eEEEEeee--------EEEECCcceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 46777765 33456667899999999999 9999999999999999999954
No 150
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=5.9e-08 Score=78.60 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=32.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 16 ~~l~~i~~~i~~G-------~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 16 PVLKDVSLTIKPG-------EKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred ccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence 6889999999999 9999999999999999999943
No 151
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.57 E-value=7.2e-08 Score=82.02 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=44.7
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++|+++++ ...+++..++++++|+|++| ++++|.||+|+||||+||+|+
T Consensus 6 ~~~I~vr~v--------~~~fG~~~Ild~v~l~V~~G-------ei~~iiGgSGsGKStlLr~I~ 55 (263)
T COG1127 6 EPLIEVRGV--------TKSFGDRVILDGVDLDVPRG-------EILAILGGSGSGKSTLLRLIL 55 (263)
T ss_pred cceEEEeee--------eeecCCEEEecCceeeecCC-------cEEEEECCCCcCHHHHHHHHh
Confidence 467888776 45568999999999999999 999999999999999999983
No 152
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.57 E-value=8.3e-08 Score=79.38 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 22 ~~~l~~~~~~i~~G-------e~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 22 KQLLKNVSGKAKPG-------ELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred ccceecceEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999 9999999999999999999943
No 153
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.56 E-value=8.3e-08 Score=82.17 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=35.6
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+.+++|++++| ++++|+||||+|||||||+++-
T Consensus 12 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 12 FYGDFQALKKINLDIEEN-------QVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EECCceeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 345567899999999999 9999999999999999999954
No 154
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1e-07 Score=82.19 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++.+| ++++|+|+||+|||||||+++-
T Consensus 15 ~~~~~~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 15 FYYNTSKAIEGISMDIYRN-------KVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred EEECCeEeecceEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 3456667899999999999 9999999999999999999954
No 155
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.56 E-value=6.3e-08 Score=80.44 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++-
T Consensus 19 ~il~~~s~~i~~G-------~~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 19 FTLKDINLEVPKG-------ELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred ceeeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999 9999999999999999999844
No 156
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.56 E-value=5.8e-08 Score=79.07 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=32.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++-
T Consensus 16 ~~l~~i~~~i~~G-------e~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 16 QVLKNLSLELKQG-------EKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred cceEEEEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999 9999999999999999999943
No 157
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.56 E-value=8.8e-08 Score=84.59 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=36.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~~~l~~is~~i~~G-------ei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 10 KLYGTQNALDEVSFEAQKG-------RIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EEECCEEEEEEeEEEEeCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence 3456778999999999999 9999999999999999999943
No 158
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1e-07 Score=82.37 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=35.6
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 16 ~~~~~~il~~is~~i~~G-------e~~~I~G~nGsGKSTLl~~l~G 55 (261)
T PRK14258 16 YYDTQKILEGVSMEIYQS-------KVTAIIGPSGCGKSTFLKCLNR 55 (261)
T ss_pred EeCCeeEeeceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence 345567899999999999 9999999999999999999943
No 159
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.55 E-value=7.8e-08 Score=81.89 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=35.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++..++.+++|++.+| ++++|+||||+|||||||+++-
T Consensus 9 ~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 48 (237)
T TIGR00968 9 RFGSFQALDDVNLEVPTG-------SLVALLGPSGSGKSTLLRIIAG 48 (237)
T ss_pred EECCeeeeeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 346667999999999999 9999999999999999999953
No 160
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.55 E-value=8.7e-08 Score=79.58 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=35.5
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++.+
T Consensus 10 ~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 10 VGGKEILKGVNLTIKKG-------EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eCCEEeeeccceEECCC-------cEEEEECCCCCCHHHHHHHHhCC
Confidence 45567899999999999 99999999999999999999543
No 161
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.55 E-value=8.3e-08 Score=82.55 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=35.5
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~i~ 48 (256)
T TIGR03873 10 SAGGRLIVDGVDVTAPPG-------SLTGLLGPNGSGKSTLLRLLA 48 (256)
T ss_pred EECCEEEEeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence 346677999999999999 999999999999999999994
No 162
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=7.7e-08 Score=82.02 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=34.7
Q ss_pred eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++ ...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 10 ~~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 10 YGGGKKAVNNLNLEIAKG-------EFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred eCCcceEeeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 455 56899999999999 9999999999999999999943
No 163
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=1.1e-07 Score=85.99 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=42.3
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+|+-
T Consensus 4 ~~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 4 KNFVVLKNI--------TKRFGSNTVIDNLNLTIKQG-------TMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred CcEEEEEeE--------EEEECCeEEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHHC
Confidence 456777665 34456667899999999999 9999999999999999999953
No 164
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.55 E-value=8.8e-08 Score=77.36 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=33.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 14 ~~~l~~i~l~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 14 RVLLKDLSFEIKPG-------DRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred CeeeecCeEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999 9999999999999999999843
No 165
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.55 E-value=9.2e-08 Score=80.52 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=35.5
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++....+++++|++++| ++++|+||||+||||||++++.
T Consensus 9 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 9 RFGKQTAVNNISLTVPKN-------SVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EECCEEEEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 345567899999999999 9999999999999999999943
No 166
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.3e-07 Score=80.74 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=37.8
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++....++++++++..| +++.|.||+|||||||||.|+-
T Consensus 10 ~~~f~~~~vl~~i~L~v~~G-------EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 10 SKSFGGVEVLEDINLSVEKG-------EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEeCceEEeccceeEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 45567788999999999999 9999999999999999999953
No 167
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.54 E-value=1.2e-07 Score=77.44 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=31.9
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++++|++++| ++++|+||||+|||||||+++-
T Consensus 15 ~l~~vs~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 15 AVRDVSFEVRAG-------EIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred eecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 889999999999 9999999999999999999943
No 168
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=81.88 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=37.3
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 15 ~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 55 (261)
T PRK14263 15 KIFYGNFMAVRDSHVPIRKN-------EITGFIGPSGCGKSTVLRSLN 55 (261)
T ss_pred EEEeCCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 45667778999999999999 999999999999999999984
No 169
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.4e-07 Score=82.07 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=41.5
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 24 ~~l~~~nl--------~~~~~~~~il~~vs~~i~~G-------e~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 24 TALEVRNL--------NLFYGDKQALFDISMRIPKN-------RVTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred cEEEEEEE--------EEEECCeeEeeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 45666665 33446667899999999999 9999999999999999999943
No 170
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.54 E-value=9.8e-08 Score=77.94 Aligned_cols=38 Identities=32% Similarity=0.530 Sum_probs=34.6
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+.+++|++.+| ++++|+||||+|||||||+++
T Consensus 9 ~~~~~~l~~~~~~i~~G-------~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 9 YGGRTVLDDLSLSIEAG-------EIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred ECCeeeEeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45567899999999999 999999999999999999984
No 171
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.54 E-value=5.5e-08 Score=75.31 Aligned_cols=32 Identities=28% Similarity=0.633 Sum_probs=29.0
Q ss_pred ecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 177 IGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
|++++|++++| ++++|+|+||+|||||||+++
T Consensus 1 L~~v~~~i~~g-------~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 1 LKNVSLEIKPG-------EIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEEEEEETT-------SEEEEEESTTSSHHHHHHHHT
T ss_pred CCceEEEEcCC-------CEEEEEccCCCccccceeeec
Confidence 46788999999 999999999999999999883
No 172
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.53 E-value=1.2e-07 Score=79.90 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 21 ~~il~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 21 LPVLKNVSLTVNAG-------ECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred eEEEecceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999 9999999999999999999843
No 173
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.53 E-value=1.1e-07 Score=82.36 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.+++|++++| ++++|+||||+|||||||+++.
T Consensus 27 ~~l~~vsl~i~~G-------e~~~i~G~NGsGKSTLl~~l~G 61 (267)
T PRK15112 27 EAVKPLSFTLREG-------QTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred ceeeeeeEEecCC-------CEEEEEcCCCCCHHHHHHHHhC
Confidence 5899999999999 9999999999999999999953
No 174
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.53 E-value=9e-08 Score=80.78 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++.
T Consensus 21 ~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLlk~l~G 55 (226)
T cd03234 21 RILNDVSLHVESG-------QVMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred ccccCceEEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999 9999999999999999999953
No 175
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=9.8e-08 Score=82.82 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=39.6
Q ss_pred ceEEeccccCcccCCCceeeCCe--eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNS--TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~--~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++. ..+++++|++++| ++++|+||||+|||||||+++.
T Consensus 6 ~~l~i~~l--------~~~~~~~~~~~l~~isl~i~~G-------e~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 6 SIIVFKNV--------SFQYQSDASFTLKDVSFNIPKG-------QWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred ceEEEEEE--------EEEcCCCCCcceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 45666655 2334442 4789999999999 9999999999999999999943
No 176
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.1e-07 Score=80.55 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=35.8
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 9 ~~~~~~il~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~g 48 (232)
T cd03300 9 FYGGFVALDGVSLDIKEG-------EFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred EeCCeeeeccceEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 345667999999999999 9999999999999999999953
No 177
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.52 E-value=1.1e-07 Score=90.56 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=41.9
Q ss_pred ceEEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...++ +...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 5 ~~l~i~~l--------~~~y~~~~~il~~vs~~i~~G-------e~~~iiG~NGsGKSTLlk~i~G 55 (556)
T PRK11819 5 YIYTMNRV--------SKVVPPKKQILKDISLSFFPG-------AKIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred EEEEEeeE--------EEEeCCCCeeeeCceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 46667665 34456 568999999999999 9999999999999999999943
No 178
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.4e-07 Score=80.70 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=35.8
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+.+++|++.+| ++++|+||||+|||||||+++-
T Consensus 12 ~~~~~~~l~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 12 YFDDAHILKNVNLDIPKN-------SVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EeCCeEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 345667999999999999 9999999999999999999954
No 179
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1.3e-07 Score=78.77 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.7
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+...+.+++|++++| ++++|+||||+|||||||+++-
T Consensus 19 ~~~il~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 19 KIPILKDFSGVVKPG-------EMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred CceeeeeEEEEECCC-------cEEEEECCCCCCHHHHHHHhcc
Confidence 457899999999999 9999999999999999999843
No 180
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.4e-07 Score=85.71 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=36.3
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 11 ~~~~~~~vl~~vsl~i~~G-------e~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 11 KAYGDVVISKDINLDIHEG-------EFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred EEeCCeEEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 3456667899999999999 9999999999999999999953
No 181
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=1.3e-07 Score=82.36 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=34.6
Q ss_pred eeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++ ....+++++|++++| ++++|+||||+|||||||+++
T Consensus 13 ~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 13 RYKDGTKALKGLSLSIPEG-------SKTALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred EeCCCCeeeeeEEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 344 346899999999999 999999999999999999994
No 182
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.4e-07 Score=82.10 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=34.7
Q ss_pred eeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++ +...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 15 ~~~~~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 15 TWRNGHTALRDASFTVPGG-------SIAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred EecCCcEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 344 457899999999999 999999999999999999994
No 183
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1.2e-07 Score=80.03 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 17 ~~l~~isl~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 17 PVLKDINFSIKPG-------ETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred ccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999 9999999999999999999943
No 184
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.51 E-value=1.4e-07 Score=79.55 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 28 ~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 28 LVLQDVSFTLHPG-------EVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred ccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999 9999999999999999999953
No 185
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.51 E-value=1.5e-07 Score=88.22 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 268 ~~~~~~~il~~vsl~i~~G-------e~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 268 VSYNDRPILHNLSWQVNPG-------EHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EEECCeeEEeeceEEEcCC-------CEEEEECCCCCCHHHHHHHHcC
Confidence 3456667899999999999 9999999999999999999954
No 186
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.51 E-value=1.1e-07 Score=81.00 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=34.0
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.....+++++|++++| ++++|+||||+|||||||+++
T Consensus 32 ~~~~il~~vs~~i~~G-------e~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 32 REVEALKGISFTIEKG-------EIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred CCeeeeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4567899999999999 999999999999999999984
No 187
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=1.1e-07 Score=80.59 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=32.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 16 ~~l~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 16 PVLRDISLDIPAG-------ETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred cceeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999 9999999999999999999943
No 188
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.4e-07 Score=82.68 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=32.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 25 ~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 25 KALNNTSLTFKKN-------KVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred ceeeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999 9999999999999999999943
No 189
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.50 E-value=1.4e-07 Score=88.81 Aligned_cols=50 Identities=26% Similarity=0.332 Sum_probs=41.1
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++++.++ ...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 3 ~~i~~~~l--------~~~~~~~~~l~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~l~G 52 (501)
T PRK10762 3 ALLQLKGI--------DKAFPGVKALSGAALNVYPG-------RVMALVGENGAGKSTMMKVLTG 52 (501)
T ss_pred ceEEEeee--------EEEeCCeEEeeeeeEEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence 35666654 33456667899999999999 9999999999999999999943
No 190
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.50 E-value=1.5e-07 Score=77.72 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=32.4
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++....++ ++|++++| ++++|+||||+|||||||+++-
T Consensus 11 ~~~~~l~~-vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 11 IEQKNLFD-LSITFLPS-------AITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred ECCcEEEE-EEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence 34455565 99999999 9999999999999999999943
No 191
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.5e-07 Score=88.72 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=41.6
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 4 ~~l~~~nl--------~~~~~~~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 4 YLLEMKNI--------TKTFGGVKALDNVSLKVRAG-------EIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred ceEEEeee--------EEEeCCeEeecceeEEEeCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence 45666655 34456667999999999999 9999999999999999999953
No 192
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.50 E-value=1.5e-07 Score=85.04 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=36.7
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++...+++++|++++| ++++|.||||+|||||||+++-
T Consensus 11 ~~~~~~~~~l~~vs~~i~~G-------e~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 11 RKRFGAFTALKDISLSVKKG-------EFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred EEEeCCeEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHC
Confidence 33456667899999999999 9999999999999999999954
No 193
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.4e-07 Score=81.93 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 22 ~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 22 NNALKNVSFEINEG-------EYVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred ccceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999 9999999999999999999953
No 194
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.49 E-value=1.8e-07 Score=80.94 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=33.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 24 ~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 24 APVLTNVSLSIEEG-------ETVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred eEEeeCceeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999 9999999999999999999843
No 195
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.4e-07 Score=91.54 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=37.4
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 8 s~~~g~~~~l~~vs~~i~~G-------e~v~LvG~NGsGKSTLLkiL~G 49 (638)
T PRK10636 8 QIRRGVRVLLDNATATINPG-------QKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred EEEeCCceeecCcEEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 34467778999999999999 9999999999999999999943
No 196
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.7e-07 Score=80.33 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=35.7
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+++...+++++|++.+| ++++|+||||+|||||||+++.+
T Consensus 15 ~~~~~~l~~is~~i~~G-------e~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 15 YGSKQILFDINLDIYKR-------EVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred ECCeeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence 45567899999999999 99999999999999999999543
No 197
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.49 E-value=1.2e-07 Score=80.19 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=35.6
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++....+++++|++++| ++++|+||||+|||||+|+++
T Consensus 31 ~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 31 EVGEFWALKDVSFEVPRG-------ERIGLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred hcCCeEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 456677999999999999 999999999999999999994
No 198
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.5e-07 Score=82.29 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+.+++|++++| ++++|+||||+|||||||+++
T Consensus 20 ~~~l~~vsl~i~~G-------e~~~i~G~nGaGKSTLl~~i~ 54 (279)
T PRK13635 20 TYALKDVSFSVYEG-------EWVAIVGHNGSGKSTLAKLLN 54 (279)
T ss_pred ccceeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 35899999999999 999999999999999999985
No 199
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.49 E-value=1.5e-07 Score=79.00 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=33.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 17 ~~~l~~i~~~i~~G-------~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 17 IPALDNVSLTIRAG-------EKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred cccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999 9999999999999999999943
No 200
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.6e-07 Score=81.96 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=33.6
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 16 ~~~~l~~vsl~i~~G-------e~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 16 SKEALNNINFIAPRN-------SRIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred CCceeeEeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999 9999999999999999999953
No 201
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.49 E-value=1.3e-07 Score=76.81 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+.+++|++.+| +.++|+||||+|||||||+++.
T Consensus 15 ~~~l~~~~~~i~~G-------e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 15 PPVLRNVSFSIEPG-------ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CcceeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 35788999999999 9999999999999999999954
No 202
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.5e-07 Score=88.65 Aligned_cols=49 Identities=31% Similarity=0.372 Sum_probs=40.8
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 4 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~liG~nGsGKSTLl~~i~ 52 (510)
T PRK09700 4 PYISMAGI--------GKSFGPVHALKSVNLTVYPG-------EIHALLGENGAGKSTLMKVLS 52 (510)
T ss_pred ceEEEeee--------EEEcCCeEEeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence 45666655 34456667899999999999 999999999999999999994
No 203
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.48 E-value=1.9e-07 Score=78.51 Aligned_cols=36 Identities=28% Similarity=0.548 Sum_probs=33.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 18 ~~il~~vs~~i~~G-------~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 18 KQVLFDINLEINPG-------EIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred eeEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 56899999999999 9999999999999999999953
No 204
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.48 E-value=1.7e-07 Score=78.70 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=32.8
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++.
T Consensus 18 ~~l~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 18 PVLKNISFSIKPG-------EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred ccccceEEEECCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999 9999999999999999999954
No 205
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.8e-07 Score=84.24 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 18 ~~il~~vsl~i~~G-------ei~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 18 IHALNNVSLHIPAG-------EIFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred eEEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999 9999999999999999999843
No 206
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.47 E-value=2e-07 Score=84.91 Aligned_cols=50 Identities=26% Similarity=0.380 Sum_probs=41.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.++ ...+++...+++++|+++.| ++++|.||||||||||||+|+-
T Consensus 13 ~~L~l~~l--------~~~~~~~~~l~~vsl~i~~G-------e~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 13 PLVELRGI--------SKSFDGKEVISNLDLTINNG-------EFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred ceEEEEEE--------EEEECCeEEEeeeEEEEeCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 56777665 34456667899999999999 9999999999999999999953
No 207
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.7e-07 Score=81.64 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+.+++|++.+| ++++|.||||+|||||||+++-
T Consensus 15 ~~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 15 TEALKGINFKAEKG-------EMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred CeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999 9999999999999999999943
No 208
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.9e-07 Score=81.73 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=32.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.+++|++.+| ++++|+||||+|||||||+++-
T Consensus 21 ~~l~~v~l~i~~G-------e~~~I~G~nGaGKSTLl~~l~G 55 (282)
T PRK13640 21 PALNDISFSIPRG-------SWTALIGHNGSGKSTISKLING 55 (282)
T ss_pred cceeeEEEEEcCC-------CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999 9999999999999999999943
No 209
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.7e-07 Score=78.12 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=32.6
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+++++|++++| +++|+||||+|||||||+++
T Consensus 10 ~~~~~~l~~vs~~i~~g--------~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 10 YGKKRALDGVSLTLGPG--------MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred ECCEEEEcceeEEEcCC--------cEEEECCCCCCHHHHHHHHh
Confidence 45667899999999776 89999999999999999994
No 210
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.46 E-value=2e-07 Score=87.97 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=41.4
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~liG~NGsGKSTLl~~l~ 58 (510)
T PRK15439 10 PLLCARSI--------SKQYSGVEVLKGIDFTLHAG-------EVHALLGGNGAGKSTLMKIIA 58 (510)
T ss_pred ceEEEEeE--------EEEeCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 46677665 34456667899999999999 999999999999999999984
No 211
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.46 E-value=1.9e-07 Score=90.39 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=37.1
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++...+.+++|++++| ++++|+||||+|||||||+++-
T Consensus 10 s~~~~~~~il~~is~~i~~G-------e~v~LvG~NGsGKSTLLriiaG 51 (635)
T PRK11147 10 WLSFSDAPLLDNAELHIEDN-------ERVCLVGRNGAGKSTLMKILNG 51 (635)
T ss_pred EEEeCCceeEeCcEEEECCC-------CEEEEECCCCCCHHHHHHHHcC
Confidence 34457778999999999999 9999999999999999999843
No 212
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.8e-07 Score=81.64 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=32.0
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++++| ++++|+||||+|||||||+++
T Consensus 21 ~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 21 RALFDVNLTIEDG-------SYTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred ceeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 4889999999999 999999999999999999984
No 213
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.5e-07 Score=80.44 Aligned_cols=39 Identities=33% Similarity=0.577 Sum_probs=35.0
Q ss_pred eeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++. ..+++++++++.| +.++|+|||||||||++|+++
T Consensus 12 ~y~~~~~~l~~v~~~i~~G-------e~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 12 RYPGRKAALKDVSLEIEKG-------ERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred EcCCCceeeeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 34554 8999999999999 999999999999999999984
No 214
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=2.3e-07 Score=81.19 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=40.2
Q ss_pred ceEEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++++.++ ...++ ....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 4 ~~l~~~~l--------~~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGaGKSTLl~~i~G 54 (283)
T PRK13636 4 YILKVEEL--------NYNYSDGTHALKGININIKKG-------EVTAILGGNGAGKSTLFQNLNG 54 (283)
T ss_pred ceEEEEeE--------EEEeCCCCeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 35666655 33344 356999999999999 9999999999999999999943
No 215
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.6e-07 Score=81.92 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||+|||||||+++
T Consensus 15 ~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 49 (274)
T PRK13644 15 TPALENINLVIKKG-------EYIGIIGKNGSGKSTLALHLN 49 (274)
T ss_pred CceeeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999 999999999999999999994
No 216
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.7e-07 Score=79.48 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=33.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+.+++|++.+| ++++|+||||+|||||||+++.
T Consensus 14 ~~~l~~i~~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 14 RPVLKDVSFTIPAG-------KKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred CceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 45889999999999 9999999999999999999953
No 217
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.46 E-value=2.1e-07 Score=84.10 Aligned_cols=41 Identities=27% Similarity=0.448 Sum_probs=36.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|.||||+|||||||+|+-
T Consensus 10 ~~~~~~~~l~~isl~i~~G-------e~~~llGpsGsGKSTLLr~IaG 50 (353)
T PRK10851 10 KSFGRTQVLNDISLDIPSG-------QMVALLGPSGSGKTTLLRIIAG 50 (353)
T ss_pred EEeCCeEEEEEeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 3456667899999999999 9999999999999999999954
No 218
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.46 E-value=2.5e-07 Score=77.01 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 22 ~~l~~isl~i~~G-------~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 22 PVLKNVSFKVKAG-------EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred ccccCceEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999 9999999999999999999943
No 219
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.6e-07 Score=81.54 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+.+++|++++| ++++|+||||+|||||||+++.
T Consensus 33 ~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 33 KTGQTVGVNDVSLDVREG-------EIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred hcCCceEeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 356667899999999999 9999999999999999999843
No 220
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=2.5e-07 Score=83.74 Aligned_cols=38 Identities=34% Similarity=0.498 Sum_probs=34.6
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++...+++++|++.+| ++++|.||||+|||||||+++.
T Consensus 15 ~~~~~l~~vsl~i~~G-------e~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 15 GKTQVIKGIDLDVADG-------EFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CCCEEEeeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHHC
Confidence 4567899999999999 9999999999999999999954
No 221
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.4e-07 Score=87.80 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=41.1
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 318 ~~l~~~~l--------~~~~~~~~~l~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 318 NALEVENL--------TKGFDNGPLFKNLNLLLEAG-------ERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred ceEEEEee--------EEeeCCceeecCcEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 46666665 33456667899999999999 999999999999999999984
No 222
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.45 E-value=2.2e-07 Score=87.19 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 12 ~~~~~~il~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 12 RLSDTKTLQLPSLTLNAG-------DSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred EcCCeeecccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 356667899999999999 9999999999999999999943
No 223
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.45 E-value=2.5e-07 Score=88.18 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=42.0
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 320 ~~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~l~ 369 (552)
T TIGR03719 320 DKVIEAENL--------SKGFGDKLLIDDLSFKLPPG-------GIVGVIGPNGAGKSTLFRMIT 369 (552)
T ss_pred CeEEEEeeE--------EEEECCeeeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 356777665 34457778999999999999 999999999999999999984
No 224
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.3e-07 Score=87.90 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=35.5
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++....+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~il~~vsl~i~~G-------e~~~liG~NGsGKSTLl~~l~ 48 (530)
T PRK15064 10 QFGAKPLFENISVKFGGG-------NRYGLIGANGCGKSTFMKILG 48 (530)
T ss_pred EeCCcEeEeCCEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 356667999999999999 999999999999999999994
No 225
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=2.6e-07 Score=80.73 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+.+++|++.+| ++++|+||||+|||||||+++
T Consensus 23 ~~vl~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 23 KLALDDVNLEVKKG-------EFLVILGRNGSGKSTIAKHMN 57 (280)
T ss_pred cceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 35999999999999 999999999999999999994
No 226
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.44 E-value=2.6e-07 Score=87.01 Aligned_cols=49 Identities=31% Similarity=0.425 Sum_probs=40.9
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
|.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 3 ~~l~~~~l--------~~~~~~~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 51 (501)
T PRK11288 3 PYLSFDGI--------GKTFPGVKALDDISFDCRAG-------QVHALMGENGAGKSTLLKILS 51 (501)
T ss_pred ceEEEeee--------EEEECCEEEEeeeeEEEeCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 45666654 33456667899999999999 999999999999999999994
No 227
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=2.9e-07 Score=83.96 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=42.1
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+|+.
T Consensus 17 ~~~l~l~~v--------~~~~~~~~~l~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 17 TPLLEIRNL--------TKSFDGQHAVDDVSLTIYKG-------EIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred CceEEEEeE--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 356777665 34456667899999999999 9999999999999999999954
No 228
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.44 E-value=2.8e-07 Score=79.24 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.7
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 15 ~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 15 AQPLVHGVSLTLQRG-------RVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred ccceecceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999 9999999999999999999943
No 229
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=2.2e-07 Score=81.44 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=32.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 21 ~~l~~vsl~i~~G-------e~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 21 KGLDNISFELEEG-------SFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred cceeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999 9999999999999999999843
No 230
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=2.3e-07 Score=81.36 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=32.4
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++.+| ++++|+||||+|||||||+++
T Consensus 21 ~~l~~vs~~i~~G-------e~~~i~G~nGaGKSTLl~~l~ 54 (287)
T PRK13637 21 KALDNVNIEIEDG-------EFVGLIGHTGSGKSTLIQHLN 54 (287)
T ss_pred ceeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 5899999999999 999999999999999999994
No 231
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=2.6e-07 Score=80.68 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=32.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.+++|++++| ++++|+||||+|||||||+++-
T Consensus 21 ~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 21 YTLNDVSFHVKQG-------EWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred eeeeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999 9999999999999999999843
No 232
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.44 E-value=2e-07 Score=79.14 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=32.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++.
T Consensus 17 ~~l~~i~~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 51 (238)
T cd03249 17 PILKGLSLTIPPG-------KTVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred cceeceEEEecCC-------CEEEEEeCCCCCHHHHHHHHhc
Confidence 5889999999999 9999999999999999999954
No 233
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.43 E-value=2.6e-07 Score=88.01 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=40.3
Q ss_pred ceEEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++++.++ ...++ ....+++++|++++| ++++|+||||+|||||||+++
T Consensus 3 ~~i~~~nl--------s~~~~~~~~il~~is~~i~~G-------e~~~liG~NGsGKSTLl~~i~ 52 (552)
T TIGR03719 3 YIYTMNRV--------SKVVPPKKEILKDISLSFFPG-------AKIGVLGLNGAGKSTLLRIMA 52 (552)
T ss_pred EEEEEeeE--------EEecCCCCeeecCceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45666655 33345 557899999999999 999999999999999999994
No 234
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=2.4e-07 Score=73.76 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=34.7
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++...+.+++|++++| ++++|+||||+|||||||+++.
T Consensus 9 ~~~~~~l~~~~~~i~~g-------~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 9 YGGRTALDNVSLTLKAG-------EIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred eCCeeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 45557899999999999 9999999999999999999954
No 235
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.43 E-value=2.4e-07 Score=78.63 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=33.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..+++++|++++| +.++|+||+||||||||..+|.+
T Consensus 19 ~~L~~v~l~i~~G-------e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 19 EALKDVNLEIEAG-------EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EecccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999 99999999999999999999653
No 236
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=2.3e-07 Score=81.58 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...|++++|++++| ++++|.||||+|||||||+++.
T Consensus 20 ~~~L~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 55 (290)
T PRK13634 20 RRALYDVNVSIPSG-------SYVAIIGHTGSGKSTLLQHLNG 55 (290)
T ss_pred ccceeeEEEEEcCC-------CEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999 9999999999999999999953
No 237
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.43 E-value=2.8e-07 Score=83.59 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=36.2
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++....+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 13 ~~~~~~~~l~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 13 VAYGANTVLDDLSLEIEAG-------ELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred EEECCeEEEeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 3446667899999999999 9999999999999999999954
No 238
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.9e-07 Score=78.13 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=41.1
Q ss_pred ceEEeccccCcccCCCceee-CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYI-PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~v-p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++++ +..+ .....|.++++++++| ++++|.||+|+|||||||.+.
T Consensus 2 ~~i~~~nl--------~k~yp~~~~aL~~Vnl~I~~G-------E~VaiIG~SGaGKSTLLR~ln 51 (258)
T COG3638 2 MMIEVKNL--------SKTYPGGHQALKDVNLEINQG-------EMVAIIGPSGAGKSTLLRSLN 51 (258)
T ss_pred ceEEEeee--------eeecCCCceeeeeEeEEeCCC-------cEEEEECCCCCcHHHHHHHHh
Confidence 34666665 4445 5668999999999999 999999999999999999984
No 239
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.43 E-value=3e-07 Score=87.67 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=41.7
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 323 ~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~i~ 371 (556)
T PRK11819 323 KVIEAENL--------SKSFGDRLLIDDLSFSLPPG-------GIVGIIGPNGAGKSTLFKMIT 371 (556)
T ss_pred eEEEEEeE--------EEEECCeeeecceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 46777665 34456778999999999999 999999999999999999994
No 240
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=3.6e-07 Score=81.81 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=33.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++.+| ++++|+|+||+|||||+|+++.
T Consensus 20 ~~~l~~vsl~i~~G-------e~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 20 VKAVDRVSMTLTEG-------EIRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred EEEEeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999 9999999999999999999843
No 241
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=2.7e-07 Score=81.75 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=32.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++-
T Consensus 21 ~~l~~vsl~i~~G-------e~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 21 KALDNVSVEINQG-------EFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred cceeeeEEEEeCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999 9999999999999999999943
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.41 E-value=2.5e-07 Score=78.48 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.4
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 15 ~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 15 PVILDNISLRIKPG-------EVVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred ccceeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999 999999999999999999994
No 243
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.41 E-value=2.4e-07 Score=77.71 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=33.4
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+...+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 13 ~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 13 GLATLSNINIRIPTG-------QLTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred CCcceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 346889999999999 9999999999999999999953
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.40 E-value=3.3e-07 Score=86.17 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=35.6
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 10 ~~~~~~il~~isl~i~~G-------e~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 10 TFGGVKALDGIDLEVRPG-------ECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred EeCCeEeecceEEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 345667899999999999 9999999999999999999943
No 245
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3e-07 Score=76.42 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=38.3
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.+.++.+++++|++++.| ....|.||||+||||||-+++=
T Consensus 8 ~K~y~~~~vl~~isl~i~~g-------~iTs~IGPNGAGKSTLLS~~sR 49 (252)
T COG4604 8 SKSYGTKVVLDDVSLDIPKG-------GITSIIGPNGAGKSTLLSMMSR 49 (252)
T ss_pred hHhhCCEEeeccceeeecCC-------ceeEEECCCCccHHHHHHHHHH
Confidence 56688999999999999999 8999999999999999988753
No 246
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.39 E-value=3.1e-07 Score=86.82 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=35.9
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+++...+++++|++++| ++++|+||||+|||||||+++.+
T Consensus 10 ~~~~~~l~~is~~i~~G-------e~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 10 FDGKEVLKNISFTIEEG-------EVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred ECCeEeeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhhc
Confidence 46667899999999999 99999999999999999999544
No 247
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=4.4e-07 Score=80.96 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=40.7
Q ss_pred CceEEeccccCcccCCCceeeCC-----eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPN-----STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~-----~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+.++++++ ...++. ...+++++|++++| ++++|+||||+|||||||+++
T Consensus 19 ~~~l~~~nl--------~~~y~~~~~~~~~~L~~vsl~i~~G-------e~~~I~G~nGsGKSTLl~~L~ 73 (320)
T PRK13631 19 DIILRVKNL--------YCVFDEKQENELVALNNISYTFEKN-------KIYFIIGNSGSGKSTLVTHFN 73 (320)
T ss_pred CceEEEEeE--------EEEeCCCCcccccceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 367888776 223332 25899999999999 999999999999999999994
No 248
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=3.6e-07 Score=80.08 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|.||||+|||||||+++-
T Consensus 21 ~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 21 QAIHDVNTEFEQG-------KYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred CceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999 9999999999999999999953
No 249
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.39 E-value=5.3e-07 Score=80.85 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=32.4
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+|+||+|||||+|+++
T Consensus 34 ~~~l~~vsl~i~~G-------e~~~lvG~sGsGKSTLlk~i~ 68 (331)
T PRK15079 34 LKAVDGVTLRLYEG-------ETLGVVGESGCGKSTFARAII 68 (331)
T ss_pred eEEEeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 35889999999999 999999999999999999984
No 250
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=4.6e-07 Score=81.05 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=32.3
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++.+| ++++|+|+||+|||||+|+++
T Consensus 21 ~~l~~vsl~i~~G-------e~~~lvG~sGsGKSTL~~~l~ 54 (326)
T PRK11022 21 RAVDRISYSVKQG-------EVVGIVGESGSGKSVSSLAIM 54 (326)
T ss_pred EEEeeeEEEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence 5899999999999 999999999999999999984
No 251
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.39 E-value=4e-07 Score=82.02 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=32.9
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++.
T Consensus 19 ~~L~~vsl~i~~G-------ei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 19 QALNNVSLHVPAG-------QIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999 9999999999999999999954
No 252
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=3.2e-07 Score=78.14 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=34.8
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
......|++++|++..| +.++|.|+||+|||||||.++-
T Consensus 37 ~~~~~aL~disf~i~~G-------e~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 37 VAEFWALKDISFEIYKG-------ERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred cceEEEecCceEEEeCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 34457899999999999 9999999999999999999853
No 253
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.39 E-value=3.7e-07 Score=78.67 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=33.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+|+||+|||||||+++.
T Consensus 34 ~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G 69 (257)
T cd03288 34 KPVLKHVKAYIKPG-------QKVGICGRTGSGKSSLSLAFFR 69 (257)
T ss_pred CcceeEEEEEEcCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999 9999999999999999999843
No 254
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=3.7e-07 Score=80.13 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=32.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++.+| ++++|+||||+|||||||+++-
T Consensus 20 ~~l~~vsl~i~~G-------e~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 20 RALFDIDLEVKKG-------SYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred cceeeeEEEEcCC-------CEEEEECCCCChHHHHHHHHhc
Confidence 4889999999999 9999999999999999999943
No 255
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=3.9e-07 Score=77.21 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=28.3
Q ss_pred CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++|++.+| ++++|+||||+|||||||+++
T Consensus 17 ~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 17 RFDLTVERG-------ERVAILGPSGAGKSTLLNLIA 46 (232)
T ss_pred eeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 789999999 999999999999999999994
No 256
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.37 E-value=4.7e-07 Score=85.80 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=33.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 22 ~~~l~~isl~i~~G-------e~~~iiG~nGsGKSTLl~~i~G 57 (529)
T PRK15134 22 RTVVNDVSLQIEAG-------ETLALVGESGSGKSVTALSILR 57 (529)
T ss_pred eeeeeceEEEEeCC-------CEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999 9999999999999999999843
No 257
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=4.1e-07 Score=76.37 Aligned_cols=49 Identities=29% Similarity=0.416 Sum_probs=42.9
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++..++ .-|++....|+++++++..+ .+.+|.||.|||||||||++-
T Consensus 6 ~~~~~~~l--------~~yYg~~~aL~~i~l~i~~~-------~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 6 PAIEVRDL--------NLYYGDKHALKDINLDIPKN-------KVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ceeEecce--------eEEECchhhhccCceeccCC-------ceEEEECCCCcCHHHHHHHHH
Confidence 45666655 57889999999999999999 999999999999999999973
No 258
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=98.36 E-value=1.5e-07 Score=82.52 Aligned_cols=103 Identities=7% Similarity=0.044 Sum_probs=79.8
Q ss_pred cEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhcce-ee---------eecccccccchhh
Q psy13262 58 TRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICERGG-VV---------DYKPQQSNNTIFS 126 (229)
Q Consensus 58 gRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~~~-~v---------~l~~l~~~~~~~~ 126 (229)
| |+++++..++.+++|.+|+++..+.+ +..|.....+++........+.++.. ++ ....+....+.++
T Consensus 189 g-~~i~v~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~ 267 (308)
T smart00533 189 G-YYIEVTKSEAKKVPKDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALA 267 (308)
T ss_pred E-EEEEecchhhccCChHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 99999999888899999999888877 88899888888877665544433310 00 1134456788899
Q ss_pred hhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccC
Q psy13262 127 QRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCAT 165 (229)
Q Consensus 127 ~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~ 165 (229)
++|++.+++ .+++|+|++.++ +.+.+.++|||++.
T Consensus 268 ~lD~l~s~a~~a~~~~~~~P~i~~~----~~l~i~~~rHPlle 306 (308)
T smart00533 268 ELDVLLSLATLAAEGNYVRPEFVDS----GELEIKNGRHPVLE 306 (308)
T ss_pred HHHHHHHHHHHHHHCCCcCCeeCCC----CCEEEeeCCCCccc
Confidence 999999976 688999999875 57899999999985
No 259
>PLN03073 ABC transporter F family; Provisional
Probab=98.35 E-value=5.1e-07 Score=88.59 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=40.7
Q ss_pred eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|.+.++ ...++....|++++|++..| ++++|+||||+|||||||.++
T Consensus 177 ~I~i~nl--------s~~y~~~~ll~~isl~i~~G-------e~~gLvG~NGsGKSTLLr~l~ 224 (718)
T PLN03073 177 DIHMENF--------SISVGGRDLIVDASVTLAFG-------RHYGLVGRNGTGKTTFLRYMA 224 (718)
T ss_pred eEEEceE--------EEEeCCCEEEECCEEEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 4666654 34456777999999999999 999999999999999999995
No 260
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=6.6e-07 Score=80.09 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++.+| ++++|+|+||+|||||+|+++
T Consensus 28 ~~~l~~vsl~i~~G-------e~~~IvG~sGsGKSTLl~~l~ 62 (327)
T PRK11308 28 VKALDGVSFTLERG-------KTLAVVGESGCGKSTLARLLT 62 (327)
T ss_pred eeEEeeeEEEECCC-------CEEEEECCCCCcHHHHHHHHH
Confidence 35899999999999 999999999999999999984
No 261
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.35 E-value=4.6e-07 Score=85.18 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 273 ~~~l~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~l~ 307 (500)
T TIGR02633 273 RKRVDDVSFSLRRG-------EILGVAGLVGAGRTELVQALF 307 (500)
T ss_pred ccccccceeEEeCC-------cEEEEeCCCCCCHHHHHHHHh
Confidence 45899999999999 999999999999999999994
No 262
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.34 E-value=5.9e-07 Score=85.12 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=37.6
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++....+.++++++.+| ++++|+|+||+|||||||.++
T Consensus 10 s~~~g~~~l~~~~~l~~~~G-------~riGLvG~NGaGKSTLLkila 50 (530)
T COG0488 10 SLAYGDRPLLENVSLTLNPG-------ERIGLVGRNGAGKSTLLKILA 50 (530)
T ss_pred EEeeCCceeecCCcceeCCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 44568999999999999999 999999999999999999984
No 263
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=5.8e-07 Score=78.40 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=32.1
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+.+++|++.+| ++++|+|+||+|||||||+++
T Consensus 21 ~~l~~v~l~i~~G-------e~~~I~G~nGsGKSTLl~~l~ 54 (277)
T PRK13642 21 NQLNGVSFSITKG-------EWVSIIGQNGSGKSTTARLID 54 (277)
T ss_pred eeeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 4899999999999 999999999999999999984
No 264
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.34 E-value=4.8e-07 Score=78.60 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=33.0
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
....+.+++|++.+| ++++|+||||+|||||||+++-
T Consensus 36 ~~~il~~is~~i~~G-------e~~~liG~NGsGKSTLlk~L~G 72 (264)
T PRK13546 36 TFFALDDISLKAYEG-------DVIGLVGINGSGKSTLSNIIGG 72 (264)
T ss_pred ceEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 345788999999999 9999999999999999999943
No 265
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.33 E-value=2.2e-07 Score=79.15 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=36.5
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.+.++.=..+++++|++++| ++++|.||||+||||+++.+
T Consensus 11 ~k~FGGl~Al~~Vsl~v~~G-------ei~~LIGPNGAGKTTlfNli 50 (250)
T COG0411 11 SKRFGGLTAVNDVSLEVRPG-------EIVGLIGPNGAGKTTLFNLI 50 (250)
T ss_pred eeecCCEEEEeceeEEEcCC-------eEEEEECCCCCCceeeeeee
Confidence 45567778999999999999 99999999999999999987
No 266
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.32 E-value=4.2e-07 Score=75.01 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=36.5
Q ss_pred ceeeCCee-EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNST-VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~-~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+-||+.. .|.+++|.+.+| +++-||||+|+|||||||++..
T Consensus 8 ~k~Y~~g~~aL~~vs~~i~~G-------ef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 8 SKAYPGGREALRDVSFHIPKG-------EFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred hhhcCCCchhhhCceEeecCc-------eEEEEECCCCCCHHHHHHHHHh
Confidence 34456655 899999999999 9999999999999999999854
No 267
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.8e-07 Score=75.66 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=34.9
Q ss_pred eeeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+..+ .+|++++++++.| ++-+|.||||+|||||.+++.
T Consensus 11 v~v~~~keILkgvnL~v~~G-------EvhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 11 VEVEGKKEILKGVNLTVKEG-------EVHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred EEecCchhhhcCcceeEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 345553 8999999999999 999999999999999998773
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.32 E-value=6.4e-07 Score=84.88 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 299 ~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 299 NVVVKNISFTLRPG-------ETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred ceeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999 9999999999999999999953
No 269
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.32 E-value=2.8e-07 Score=76.72 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=34.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+|-+....+.+++|.++.| ++++|.||||+||||+||+++-
T Consensus 10 ~y~~~v~AvrdVSF~ae~G-------ei~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEG-------EITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred hccCHHhhhhheeEEeccc-------eEEEEEcCCCCCchhHHHHHHH
Confidence 4433333788999999999 9999999999999999999954
No 270
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.32 E-value=8.1e-07 Score=83.98 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||+|||||||+++
T Consensus 297 ~~il~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~l~ 331 (520)
T TIGR03269 297 VKAVDNVSLEVKEG-------EIFGIVGTSGAGKTTLSKIIA 331 (520)
T ss_pred ceEEeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999 999999999999999999994
No 271
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.31 E-value=8.7e-07 Score=72.64 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=30.8
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++...+.+. +++++| ++++|+||||+|||||||+++
T Consensus 10 ~~~~~~l~~~-~~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 10 YGVFFLLVEL-GVVKEG-------EVIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred ECCEEEEccC-cEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence 4555566664 788888 999999999999999999984
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=6.6e-07 Score=84.34 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=32.5
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||+|||||||+++
T Consensus 275 ~~vl~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 275 IKRVDDVSFSLRRG-------EILGIAGLVGAGRTELVQCLF 309 (506)
T ss_pred cccccceeeEEcCC-------cEEEEeCCCCCCHHHHHHHHh
Confidence 35789999999999 999999999999999999994
No 273
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=6.5e-07 Score=76.12 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=31.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++++|++.+| ++++|+||||+|||||||+++.
T Consensus 14 ~l~~is~~i~~G-------e~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 14 KLKNVSLEVERG-------DYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred eeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 699999999999 9999999999999999999943
No 274
>KOG0064|consensus
Probab=98.30 E-value=1.2e-06 Score=81.89 Aligned_cols=39 Identities=36% Similarity=0.585 Sum_probs=34.7
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++.+..++|++++| .++.||||||||||.++|.+|-+
T Consensus 493 ~~~vvv~~Ltf~i~~G-------~hLLItGPNGCGKSSLfRILggL 531 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPG-------MHLLITGPNGCGKSSLFRILGGL 531 (728)
T ss_pred CcceeecceeEEecCC-------ceEEEECCCCccHHHHHHHHhcc
Confidence 3567888999999999 99999999999999999999643
No 275
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.30 E-value=6.4e-07 Score=77.03 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=36.5
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
++.+.+...+++++|+++.| +.+++.||+||||||+||+|
T Consensus 8 sk~y~~~~av~~v~l~I~~g-------ef~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 8 SKRYGNKKAVDDVNLTIEEG-------EFLVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred ehhcCCceeeeeeeEEecCC-------eEEEEECCCCCcHHHHHHHH
Confidence 34456889999999999999 99999999999999999999
No 276
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.29 E-value=8.1e-07 Score=77.96 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=38.9
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ .+ .+...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 38 ~~l~i~nl---------s~-~~~~vL~~vs~~i~~G-------e~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 38 NNLFFSNL---------CL-VGAPVLKNINLKIEKG-------EMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred CeEEEEEE---------EE-ecccceeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45777665 12 2456899999999999 999999999999999999984
No 277
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.29 E-value=5.1e-07 Score=77.22 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=38.8
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
.+.++....+++++|.+++| +++++.||||+||||++|+| +++
T Consensus 9 tK~Fg~k~av~~isf~v~~G-------~i~GllG~NGAGKTTtfRmILgll 52 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPG-------EIFGLLGPNGAGKTTTFRMILGLL 52 (300)
T ss_pred hhccCceeeecceeeeecCC-------eEEEeecCCCCCccchHHHHhccC
Confidence 45678889999999999999 99999999999999999998 544
No 278
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.29 E-value=1.2e-06 Score=78.40 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=40.4
Q ss_pred CceEEeccccCcccCCCceeeC----CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIP----NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp----~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++++.++ ...++ ....+++++|++++| ++++|+|+||+|||||+|+++
T Consensus 10 ~~~L~i~~l--------~~~~~~~~~~~~~l~~vsl~i~~G-------e~~~ivG~sGsGKSTL~~~l~ 63 (330)
T PRK09473 10 DALLDVKDL--------RVTFSTPDGDVTAVNDLNFSLRAG-------ETLGIVGESGSGKSQTAFALM 63 (330)
T ss_pred CceEEEeCe--------EEEEecCCCCEEEEeeeEEEEcCC-------CEEEEECCCCchHHHHHHHHH
Confidence 466777765 33332 235899999999999 999999999999999999984
No 279
>PLN03073 ABC transporter F family; Provisional
Probab=98.29 E-value=8.4e-07 Score=87.07 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.4
Q ss_pred ceEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++++.++ ...+++ ...+++++|++.+| ++++|+||||+|||||||+++
T Consensus 507 ~~L~~~~l--------s~~y~~~~~il~~vsl~i~~G-------e~i~LvG~NGsGKSTLLk~L~ 556 (718)
T PLN03073 507 PIISFSDA--------SFGYPGGPLLFKNLNFGIDLD-------SRIAMVGPNGIGKSTILKLIS 556 (718)
T ss_pred ceEEEEee--------EEEeCCCCeeEeccEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 56777665 333443 46899999999999 999999999999999999984
No 280
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.28 E-value=9.5e-07 Score=77.24 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=33.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++|++++| ++++|+||||+|||||||++.-
T Consensus 17 ~~~l~~isl~I~~G-------e~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 17 NAVLENISFSISPG-------QRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred CcceeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999 9999999999999999999943
No 281
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.28 E-value=1e-06 Score=85.18 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=40.1
Q ss_pred ceEEeccccCcccCCCceeeC----CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIP----NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp----~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++++++ ...++ ....+++++|++.+| ++++|+||||+|||||||+++
T Consensus 11 ~~l~v~~l--------~~~y~~~~~~~~~l~~is~~v~~G-------e~~~lvG~nGsGKSTLl~~l~ 63 (623)
T PRK10261 11 DVLAVENL--------NIAFMQEQQKIAAVRNLSFSLQRG-------ETLAIVGESGSGKSVTALALM 63 (623)
T ss_pred ceEEEece--------EEEecCCCCceeEEEeeEEEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence 56777765 33333 236899999999999 999999999999999999994
No 282
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.27 E-value=9.1e-07 Score=83.43 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=31.9
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++++| ++++|+||||+|||||||+++
T Consensus 277 ~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLlk~i~ 310 (510)
T PRK09700 277 KKVRDISFSVCRG-------EILGFAGLVGSGRTELMNCLF 310 (510)
T ss_pred CcccceeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 3789999999999 999999999999999999994
No 283
>KOG0062|consensus
Probab=98.26 E-value=1.3e-07 Score=87.79 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=96.5
Q ss_pred ccccccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhhhhh----hhhhhc----
Q psy13262 42 DTDADMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLDSDQ----GQICER---- 109 (229)
Q Consensus 42 d~~a~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~s~q----t~l~e~---- 109 (229)
|..+-.|.|+ |+.. ...+++++++.+ ++.|++||.+.+.. +.+-++|+....+..+.. ..|-..
T Consensus 230 Dv~av~WLe~--yL~t~~~T~liVSHDr~F--Ln~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R 305 (582)
T KOG0062|consen 230 DVVAVAWLEN--YLQTWKITSLIVSHDRNF--LNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYR 305 (582)
T ss_pred hhHHHHHHHH--HHhhCCceEEEEeccHHH--HHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHH
Confidence 3457889997 5554 788888888887 89999999999877 777888887666544322 222111
Q ss_pred ---ceeeeec--ccccccchhhhhhHHHHHHhCCCccceEec-----------CCCCCceEEeccccCcccCCCceeeCC
Q psy13262 110 ---GGVVDYK--PQQSNNTIFSQRNILKDMYQQGVCVPTFLG-----------LEEPHPYISALESLYPCATGDQTYIPN 173 (229)
Q Consensus 110 ---~~~v~l~--~l~~~~~~~~~~d~l~~~~~~~~~~P~~~~-----------~~~~~~~i~~~~~~hpll~~~~~~vp~ 173 (229)
+.++... +.+++..+++++.+|. +.+.-+|...+ +...||.+.+..+ ...|.|+
T Consensus 306 ~h~q~fid~FrYna~ra~svqSRIk~L~---kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V-------~f~y~p~ 375 (582)
T KOG0062|consen 306 AHLQVFIDKFRYNAARASSVQSRIKMLG---KLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV-------AFEYTPS 375 (582)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHhc---cCCCCCccceecccceecCCCCCcCCCCeeEEEee-------eccCCCc
Confidence 2222111 2233444555555433 33333333322 1123566655544 2456777
Q ss_pred e-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 S-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+ ..+..++++++.. .++.++|+||.||||+||.+
T Consensus 376 ~y~~~~~~~~d~e~~-------sRi~~vg~ng~gkst~lKi~ 410 (582)
T KOG0062|consen 376 EYQWRKQLGLDRESD-------SRISRVGENGDGKSTLLKIL 410 (582)
T ss_pred chhhhhccCCccchh-------hhhheeccCchhHHHHHHHH
Confidence 7 5667888887777 89999999999999999987
No 284
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.25 E-value=1.3e-06 Score=84.59 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=32.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++++| ++++|+||||+|||||||+++
T Consensus 338 ~~l~~vs~~i~~G-------e~~~lvG~nGsGKSTLlk~i~ 371 (623)
T PRK10261 338 HAVEKVSFDLWPG-------ETLSLVGESGSGKSTTGRALL 371 (623)
T ss_pred EEEeeeEeEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 5899999999999 999999999999999999984
No 285
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.23 E-value=1.5e-06 Score=81.31 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=44.3
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++++++. .+.+|.-..|++++|++.+| ++.+|.|-||+|||||+|.++
T Consensus 6 ~~ll~~~~i--------~K~FggV~AL~~v~l~v~~G-------EV~aL~GeNGAGKSTLmKiLs 55 (500)
T COG1129 6 PPLLELRGI--------SKSFGGVKALDGVSLTVRPG-------EVHALLGENGAGKSTLMKILS 55 (500)
T ss_pred cceeeeecc--------eEEcCCceeeccceeEEeCc-------eEEEEecCCCCCHHHHHHHHh
Confidence 357777766 66778889999999999999 999999999999999999984
No 286
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=1.7e-06 Score=77.49 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=39.9
Q ss_pred ceEEeccccCcccCCCceeeC--CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIP--NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp--~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.+.++ ...++ ....|++++|++.+| ++++|+||||+||||||++++-
T Consensus 79 ~~i~~~nl--------s~~y~~~~~~~L~~is~~I~~G-------e~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 79 NVFEIRNF--------NFWYMNRTKHVLHDLNLDIKRN-------KVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred ceEEEEee--------EEEecCCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 46667665 22232 346899999999999 9999999999999999999843
No 287
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=1e-06 Score=80.96 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=33.4
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.....+++++|++++| ++++|+||||+|||||||+++
T Consensus 39 ~~~~~L~~isl~i~~G-------ei~~LvG~NGsGKSTLLr~I~ 75 (400)
T PRK10070 39 GLSLGVKDASLAIEEG-------EIFVIMGLSGSGKSTMVRLLN 75 (400)
T ss_pred CCeEEEEeEEEEEcCC-------CEEEEECCCCchHHHHHHHHH
Confidence 4445789999999999 999999999999999999994
No 288
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.21 E-value=1.2e-06 Score=75.21 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=27.0
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++.|.-.++++.+| ++++|+||||+|||||||+++
T Consensus 12 ~~~l~~~~~~i~~G-------e~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 12 EFTLEVEGGSISES-------EVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred cEEEEEecCCcCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 34444444445567 999999999999999999994
No 289
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.4e-06 Score=76.69 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=34.0
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++.-..+.+++++++.| +.++|+||||+||||+||+|+
T Consensus 10 ~~~~~~~a~~di~l~i~~G-------e~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 10 KRFGAFGALDDISLDIKSG-------ELVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred hhcccccccccceeeecCC-------cEEEEECCCCCcHHHHHHHHh
Confidence 3345555667899999999 999999999999999999994
No 290
>KOG0057|consensus
Probab=98.19 E-value=1.7e-06 Score=80.93 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=38.8
Q ss_pred EEeccccCcccCCCceeeCCee-EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 154 ISALESLYPCATGDQTYIPNST-VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 154 i~~~~~~hpll~~~~~~vp~~~-~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
|++.++ .-+++++. +|++++|++..| +.++|+|+|||||||+||++
T Consensus 352 I~F~dV--------~f~y~~k~~iL~gvsf~I~kG-------ekVaIvG~nGsGKSTilr~L 398 (591)
T KOG0057|consen 352 IEFDDV--------HFSYGPKRKVLKGVSFTIPKG-------EKVAIVGSNGSGKSTILRLL 398 (591)
T ss_pred EEEEee--------EEEeCCCCceecceeEEecCC-------CEEEEECCCCCCHHHHHHHH
Confidence 666665 33444554 999999999999 99999999999999999987
No 291
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.19 E-value=1.4e-06 Score=79.59 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=35.1
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++....+++++|++++| ++++|+||||+|||||||+++
T Consensus 33 ~~g~~~~l~~vsf~i~~G-------ei~~I~G~nGsGKSTLlr~L~ 71 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEG-------EICVLMGLSGSGKSSLLRAVN 71 (382)
T ss_pred hhCCEEEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 346667899999999999 999999999999999999994
No 292
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.19 E-value=1.3e-06 Score=75.47 Aligned_cols=35 Identities=40% Similarity=0.393 Sum_probs=30.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++++++ +++| ++++|+||||+|||||||+++.
T Consensus 14 ~~~l~~i~~-i~~G-------e~~~IvG~nGsGKSTLlk~l~G 48 (255)
T cd03236 14 SFKLHRLPV-PREG-------QVLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred chhhhcCCC-CCCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 357888884 8888 9999999999999999999943
No 293
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.19 E-value=1.9e-06 Score=81.38 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=32.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.+++|++.+| ++++|+||||+|||||||+++.
T Consensus 38 ~IL~nVSfsI~~G-------EivgIiGpNGSGKSTLLkiLaG 72 (549)
T PRK13545 38 YALNNISFEVPEG-------EIVGIIGLNGSGKSTLSNLIAG 72 (549)
T ss_pred eEEeeeEEEEeCC-------CEEEEEcCCCCCHHHHHHHHhC
Confidence 5899999999999 9999999999999999999853
No 294
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.19 E-value=1.8e-06 Score=73.64 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=35.9
Q ss_pred ceeeCCee----EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNST----VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~----~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++... .++++||++.+| ++++|+|+.||||||+.|+++.
T Consensus 10 ~~~y~~~~~~~~~l~~VS~~i~~G-------e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 10 SIVYGGGKFAFHALNNVSLEIERG-------ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEEecCCcchhhhhcceeEEecCC-------CEEEEEcCCCCCHHHHHHHHhc
Confidence 34455555 899999999999 9999999999999999999843
No 295
>PRK13409 putative ATPase RIL; Provisional
Probab=98.16 E-value=2.7e-06 Score=81.85 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.3
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++.++|++++| ++++|+||||+|||||||+++
T Consensus 353 ~~l~~~s~~i~~G-------eiv~l~G~NGsGKSTLlk~L~ 386 (590)
T PRK13409 353 FSLEVEGGEIYEG-------EVIGIVGPNGIGKTTFAKLLA 386 (590)
T ss_pred EEEEecceEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4588899999999 999999999999999999984
No 296
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.16 E-value=2.2e-06 Score=64.59 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=30.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++++++..+ +.++|.||+|+|||||++++.
T Consensus 3 ~aL~~vsl~i~~g-------e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGK-------VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCC-------EEEEEEcCCCCCHHHHHHHhh
Confidence 5677888888888 999999999999999999964
No 297
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.15 E-value=2e-06 Score=80.73 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=31.9
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|+++.| ++++|+||||+|||||||+++
T Consensus 262 ~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 295 (491)
T PRK10982 262 PSIRDVSFDLHKG-------EILGIAGLVGAKRTDIVETLF 295 (491)
T ss_pred cccceeeEEEeCC-------cEEEEecCCCCCHHHHHHHHc
Confidence 4789999999999 999999999999999999984
No 298
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.14 E-value=2.7e-06 Score=82.84 Aligned_cols=40 Identities=40% Similarity=0.580 Sum_probs=35.1
Q ss_pred eeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+| +...+++++|++++| ++++|+||||+|||||+|+++-
T Consensus 460 ~~~~~~~il~~isl~i~~G-------e~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 460 VTPNGDVLIESLSFEVPSG-------NHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred ECCCCCeeeecceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 344 347899999999999 9999999999999999999843
No 299
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.5e-06 Score=81.77 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++.+| ++++|+||||+|||||||+++
T Consensus 267 ~~l~~isl~i~~G-------e~~~iiG~NGsGKSTLlk~l~ 300 (501)
T PRK11288 267 GLREPISFSVRAG-------EIVGLFGLVGAGRSELMKLLY 300 (501)
T ss_pred CcccceeEEEeCC-------cEEEEEcCCCCCHHHHHHHHc
Confidence 3689999999999 999999999999999999983
No 300
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.12 E-value=2.4e-06 Score=80.77 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+..++++++++++| +.++|+||+|+||||++|.+.
T Consensus 348 ~~vL~~isl~i~~G-------~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 348 PPVLDGVSLDLPPG-------ERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred CceeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999 999999999999999999883
No 301
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.11 E-value=2.5e-06 Score=77.40 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=41.6
Q ss_pred eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HH
Q psy13262 153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GL 216 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l 216 (229)
-+++++.| ..|-+|.+.++++++++++| +.+-|+|.|||||||+++.+ ||
T Consensus 322 ~lelrnvr-------fay~~~~FhvgPiNl~ikrG-------elvFliG~NGsGKST~~~LLtGL 372 (546)
T COG4615 322 TLELRNVR-------FAYQDNAFHVGPINLTIKRG-------ELVFLIGGNGSGKSTLAMLLTGL 372 (546)
T ss_pred ceeeeeee-------eccCcccceecceeeEEecC-------cEEEEECCCCCcHHHHHHHHhcc
Confidence 35666652 34567779999999999999 99999999999999999987 44
No 302
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.09 E-value=2.2e-06 Score=80.92 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=30.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++++|++++| ++++|+||||+|||||||+++
T Consensus 278 ~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~i~ 310 (510)
T PRK15439 278 GFRNISLEVRAG-------EILGLAGVVGAGRTELAETLY 310 (510)
T ss_pred CccceeEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence 478999999999 999999999999999999984
No 303
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.08 E-value=2.6e-06 Score=80.23 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++++|++.+| ++++|+||||+|||||||+++
T Consensus 267 ~l~~vsl~i~~G-------e~~~liG~NGsGKSTLl~~l~ 299 (501)
T PRK10762 267 GVNDVSFTLRKG-------EILGVSGLMGAGRTELMKVLY 299 (501)
T ss_pred CcccceEEEcCC-------cEEEEecCCCCCHHHHHHHHh
Confidence 478999999999 999999999999999999984
No 304
>PRK13409 putative ATPase RIL; Provisional
Probab=98.07 E-value=3.4e-06 Score=81.15 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=34.0
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|-+|.+.|.+++ .+++| ++++|+||||+|||||||.++
T Consensus 82 ~yg~~~~~L~~l~-~i~~G-------ev~gLvG~NGaGKSTLlkiL~ 120 (590)
T PRK13409 82 RYGVNGFKLYGLP-IPKEG-------KVTGILGPNGIGKTTAVKILS 120 (590)
T ss_pred EecCCceeEecCC-cCCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 3445568999999 88888 999999999999999999994
No 305
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.06 E-value=1.7e-06 Score=75.04 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=31.6
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
...++||++.+| +++++.||||+||||+||++ |++
T Consensus 39 AVqdisf~IP~G-------~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 39 AVQDISFEIPKG-------EIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred hhheeeeecCCC-------cEEEEEcCCCCcchhhHHHHhCcc
Confidence 667899999999 99999999999999999999 544
No 306
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.05 E-value=4.1e-06 Score=80.24 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=34.8
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++...++++++++++| +.++|+||+|+||||+++.+.
T Consensus 359 ~~~~~~vL~~i~l~i~~G-------~~vaIvG~SGsGKSTL~~lL~ 397 (588)
T PRK11174 359 SPDGKTLAGPLNFTLPAG-------QRIALVGPSGAGKTSLLNALL 397 (588)
T ss_pred ccCCCeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 334567899999999999 999999999999999999883
No 307
>PLN03211 ABC transporter G-25; Provisional
Probab=98.05 E-value=3.8e-06 Score=81.84 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=34.8
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++...+++++++++++| ++++|.||||+|||||||+++
T Consensus 78 ~~~~~iL~~vs~~i~~G-------e~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 78 IQERTILNGVTGMASPG-------EILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CCCCeeeeCCEEEEECC-------EEEEEECCCCCCHHHHHHHHh
Confidence 45567999999999999 999999999999999999985
No 308
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.03 E-value=5.6e-06 Score=78.77 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=34.0
Q ss_pred eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+|+ ...++++++++++| +.++|+||||+|||||+|.++
T Consensus 332 y~~~~~~l~~i~~~i~~G-------~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 332 YQDNGFSVGPINLTIKRG-------ELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred eCCCCeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 444 45899999999999 999999999999999999984
No 309
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.01 E-value=5.9e-06 Score=79.02 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+|||||+|.++
T Consensus 356 ~~il~~i~l~i~~G-------~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 356 VPALRNINFKIPAG-------KTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred CccccCceEEeCCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999 999999999999999999983
No 310
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.99 E-value=6e-06 Score=80.84 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=38.9
Q ss_pred eEEeccccCcccCCCceeeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
-++++++ +..|-+++ ..+.++++++++| +.++|+|+||||||||+|.+
T Consensus 471 ~I~~~nv-------sf~y~~~~~~vL~~isL~I~~G-------e~vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 471 EIEFENV-------SFRYGPDDPPVLEDLSLEIPPG-------EKVAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred eEEEEEE-------EEEeCCCCcchhhceeEEeCCC-------CEEEEECCCCCCHHHHHHHH
Confidence 4566554 23444543 5999999999999 99999999999999999987
No 311
>KOG0060|consensus
Probab=97.99 E-value=8.5e-06 Score=76.85 Aligned_cols=51 Identities=33% Similarity=0.446 Sum_probs=41.3
Q ss_pred ceEEeccccCcccCCCceeeCC--eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPN--STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~--~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..|+++++ .-..|+ ++.++++++.|..| +.+.||||||+|||.|||.+|-+
T Consensus 432 n~i~~e~v--------~l~tPt~g~~lie~Ls~~V~~g-------~~LLItG~sG~GKtSLlRvlggL 484 (659)
T KOG0060|consen 432 NAIEFEEV--------SLSTPTNGDLLIENLSLEVPSG-------QNLLITGPSGCGKTSLLRVLGGL 484 (659)
T ss_pred ceEEeeee--------eecCCCCCceeeeeeeeEecCC-------CeEEEECCCCCchhHHHHHHhcc
Confidence 56777654 223344 67888999999999 99999999999999999999643
No 312
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.99 E-value=6.9e-06 Score=77.71 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=32.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++++++++| +.++|+||||+|||||+|.++
T Consensus 336 ~il~~i~l~i~~G-------~~~~ivG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 336 PALRPVSFTVPPG-------ERVALVGPSGAGKSTLLNLLL 369 (529)
T ss_pred ccccceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999 999999999999999999983
No 313
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.98 E-value=9.2e-06 Score=78.99 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=32.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++++|++++| ++++|+||||+|||||||+++.
T Consensus 22 ~il~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G 56 (648)
T PRK10535 22 EVLKGISLDIYAG-------EMVAIVGASGSGKSTLMNILGC 56 (648)
T ss_pred eeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999 9999999999999999999853
No 314
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.98 E-value=7.4e-06 Score=80.42 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=32.5
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
...++++++++++| +.++|+||||+||||++|.+
T Consensus 494 ~~vL~~isl~i~~G-------e~vaIvG~SGsGKSTLl~lL 527 (711)
T TIGR00958 494 VPVLKGLTFTLHPG-------EVVALVGPSGSGKSTVAALL 527 (711)
T ss_pred CccccCceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999 99999999999999999998
No 315
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.98 E-value=7.4e-06 Score=79.99 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+|+||+|||||+|.++
T Consensus 466 ~~vL~~isl~i~~G-------e~vaIvG~sGsGKSTLlklL~ 500 (686)
T TIGR03797 466 PLILDDVSLQIEPG-------EFVAIVGPSGSGKSTLLRLLL 500 (686)
T ss_pred ccceeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 36899999999999 999999999999999999883
No 316
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.98 E-value=6.3e-06 Score=80.71 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=33.2
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+...++++++++++| +.++|+||||+|||||+|+++
T Consensus 486 ~~~iL~~isl~i~~G-------~~vaIvG~SGsGKSTLlklL~ 521 (708)
T TIGR01193 486 GSNILSDISLTIKMN-------SKTTIVGMSGSGKSTLAKLLV 521 (708)
T ss_pred CCcceeceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999 999999999999999999983
No 317
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.97 E-value=1.7e-05 Score=75.39 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+|||||+|.++
T Consensus 331 ~~~l~~~~~~i~~G-------~~~~ivG~sGsGKSTL~~ll~ 365 (544)
T TIGR01842 331 KPTLRGISFRLQAG-------EALAIIGPSGSGKSTLARLIV 365 (544)
T ss_pred ccccccceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 36899999999999 999999999999999999983
No 318
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.97 E-value=7.2e-06 Score=78.75 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=33.8
Q ss_pred eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++ +..+++++|++++| +.++|+||||+|||||+|+++
T Consensus 344 y~~~~~~l~~i~~~i~~G-------~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 344 FANSSQGVFDVSFEAKAG-------QTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred CCCCCccccceeEEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence 444 45799999999999 999999999999999999883
No 319
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.96 E-value=8.8e-06 Score=78.03 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=34.0
Q ss_pred eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+|+ ...++++++++++| +.++|+|+||+|||||+|.+.
T Consensus 344 y~~~~~iL~~inl~i~~G-------~~v~IvG~sGsGKSTLl~lL~ 382 (588)
T PRK13657 344 YDNSRQGVEDVSFEAKPG-------QTVAIVGPTGAGKSTLINLLQ 382 (588)
T ss_pred eCCCCceecceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 344 46899999999999 999999999999999999883
No 320
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.96 E-value=8.5e-06 Score=78.06 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=32.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++++| +.++|+||||+|||||+|.++
T Consensus 354 ~il~~i~~~i~~G-------~~~aivG~sGsGKSTL~~ll~ 387 (574)
T PRK11160 354 PVLKGLSLQIKAG-------EKVALLGRTGCGKSTLLQLLT 387 (574)
T ss_pred cceecceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999 999999999999999999984
No 321
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.96 E-value=8.6e-06 Score=77.60 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+|+||+|||||+|.++
T Consensus 345 ~~il~~inl~i~~G-------~~v~IvG~sGsGKSTLl~lL~ 379 (571)
T TIGR02203 345 RPALDSISLVIEPG-------ETVALVGRSGSGKSTLVNLIP 379 (571)
T ss_pred CccccCeeEEecCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999 999999999999999999983
No 322
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.96 E-value=8.3e-06 Score=78.03 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+|||||+|+++
T Consensus 328 ~~~l~~i~~~i~~G-------~~~~ivG~sGsGKSTLl~ll~ 362 (569)
T PRK10789 328 HPALENVNFTLKPG-------QMLGICGPTGSGKSTLLSLIQ 362 (569)
T ss_pred CccccCeeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999 999999999999999999984
No 323
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.96 E-value=8.7e-06 Score=77.69 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+|+||+|||||+|++.
T Consensus 353 ~~iL~~inl~i~~G-------e~i~IvG~sGsGKSTLlklL~ 387 (576)
T TIGR02204 353 QPALDGLNLTVRPG-------ETVALVGPSGAGKSTLFQLLL 387 (576)
T ss_pred CccccceeEEecCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999 999999999999999999983
No 324
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.95 E-value=8.2e-06 Score=78.25 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=32.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..+++++++++++| +.++|+|+||+|||||+|.+
T Consensus 354 ~~il~~i~l~i~~G-------e~iaIvG~SGsGKSTLl~lL 387 (592)
T PRK10790 354 NLVLQNINLSVPSR-------GFVALVGHTGSGKSTLASLL 387 (592)
T ss_pred CceeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999 99999999999999999998
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.95 E-value=1.1e-05 Score=77.05 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=32.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++++++++| +.++|+||||+||||++++++
T Consensus 356 ~~l~~vs~~i~~G-------~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 356 FALGPIDLRIAQG-------DIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred ceeccceEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999 999999999999999999984
No 326
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.93 E-value=1.4e-05 Score=54.35 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...+|+||||+||||+|..+..+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999987543
No 327
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.93 E-value=9.6e-06 Score=79.45 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+|||||+|.++
T Consensus 492 ~~vL~~isl~i~~G-------e~vaIvG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 492 PPLIENFSLTLQPG-------QRVALVGGSGSGKSTIAKLVA 526 (710)
T ss_pred CCcccceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999 999999999999999999983
No 328
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.92 E-value=1.1e-05 Score=78.80 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=32.5
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+|||||+|+++
T Consensus 478 ~~vL~~i~l~i~~G-------~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 478 TPALDNVSLTIRPG-------EKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred ccceeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999 999999999999999999983
No 329
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.89 E-value=1.2e-05 Score=65.56 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=30.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..+.+++|+++.| +|++|.||.|+||||+||++
T Consensus 25 pV~~~vslsV~aG-------ECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 25 PVLRNVSLSVNAG-------ECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred eeeeceeEEecCc-------cEEEeeCCCCCcHHHHHHHH
Confidence 3678899999999 99999999999999999987
No 330
>KOG2355|consensus
Probab=97.88 E-value=1.3e-05 Score=67.18 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=34.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.|-..|+++.++++++..| .+..++|+||+||||+||.++-
T Consensus 22 ~y~~~dP~~~Dfnldlp~g-------sRcLlVGaNGaGKtTlLKiLsG 62 (291)
T KOG2355|consen 22 KYKVSDPIFFDFNLDLPAG-------SRCLLVGANGAGKTTLLKILSG 62 (291)
T ss_pred ecccCCceEEEEeeccCCC-------ceEEEEecCCCchhhhHHHhcC
Confidence 4445567788888888888 8999999999999999999853
No 331
>KOG0062|consensus
Probab=97.86 E-value=8.6e-06 Score=75.89 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=38.3
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+-+|+....|.+-++++..| ++.+|+|+||+|||||||+|+-
T Consensus 87 dLa~G~k~LL~~a~L~L~~G-------rRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 87 DLAYGGKILLNKANLTLSRG-------RRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeecchhhhcCCceeeecc-------cccceeCCCCCcHHHHHHHHHh
Confidence 34688889999999999999 9999999999999999999975
No 332
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=1.4e-05 Score=65.47 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=42.3
Q ss_pred CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|+++..++ .++|+...-..+++|++.+| ++++|+|..|+||||||+.+.
T Consensus 4 ~PLL~V~~l--------sk~Yg~~~gc~~vsF~l~PG-------eVLgiVGESGSGKtTLL~~is 53 (258)
T COG4107 4 KPLLSVSGL--------SKLYGPGKGCRDVSFDLYPG-------EVLGIVGESGSGKTTLLKCIS 53 (258)
T ss_pred Ccceeehhh--------hhhhCCCcCccccceeecCC-------cEEEEEecCCCcHHhHHHHHh
Confidence 356666554 56777788899999999999 999999999999999999874
No 333
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.86 E-value=2e-05 Score=84.78 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=35.2
Q ss_pred eeeCC--eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPN--STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~--~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++ ...+++++|.+++| ++++|.||||+||||+||+++
T Consensus 1945 K~Y~~~~~~aL~~ISf~I~~G-------Ei~gLLG~NGAGKTTLlkmL~ 1986 (2272)
T TIGR01257 1945 KVYSGTSSPAVDRLCVGVRPG-------ECFGLLGVNGAGKTTTFKMLT 1986 (2272)
T ss_pred EEECCCCceEEEeeEEEEcCC-------cEEEEECCCCCcHHHHHHHHh
Confidence 33443 57999999999999 999999999999999999984
No 334
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.84 E-value=2.6e-05 Score=72.37 Aligned_cols=51 Identities=29% Similarity=0.395 Sum_probs=43.5
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
+.+++++. .+.+|.-...++++|+++.| ++-+|.|-||+|||||||++ |+.
T Consensus 3 ~~l~~~~i--------tK~f~~~~And~V~l~v~~G-------eIHaLLGENGAGKSTLm~iL~G~~ 54 (501)
T COG3845 3 PALEMRGI--------TKRFPGVVANDDVSLSVKKG-------EIHALLGENGAGKSTLMKILFGLY 54 (501)
T ss_pred ceEEEecc--------EEEcCCEEecCceeeeecCC-------cEEEEeccCCCCHHHHHHHHhCcc
Confidence 45666655 66778888899999999999 99999999999999999998 543
No 335
>KOG0058|consensus
Probab=97.84 E-value=1.8e-05 Score=76.36 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=32.2
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
|+..++++++|++++| ++++|+||+||||||....+
T Consensus 479 p~~~Vlk~lsfti~pG-------e~vALVGPSGsGKSTiasLL 514 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPG-------EVVALVGPSGSGKSTIASLL 514 (716)
T ss_pred CCchhhcCceeeeCCC-------CEEEEECCCCCCHHHHHHHH
Confidence 4456899999999999 99999999999999997765
No 336
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.82 E-value=2e-05 Score=75.23 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=39.2
Q ss_pred EEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 154 ISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 154 i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
++++++ .-.++ ++..+++++|++++| +.++|+||+||||||+++.+
T Consensus 329 I~f~~v--------sf~y~~~~~vl~~is~~i~~G-------e~vaiVG~sGsGKSTl~~LL 375 (567)
T COG1132 329 IEFENV--------SFSYPGKKPVLKDISFSIEPG-------EKVAIVGPSGSGKSTLIKLL 375 (567)
T ss_pred EEEEEE--------EEEcCCCCccccCceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 666655 33355 578999999999999 99999999999999999987
No 337
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=2.4e-05 Score=69.03 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
-..++++++.|++| ++++|.|.+|+|||||+|++-+
T Consensus 19 ~~al~~vsL~I~~G-------eI~GIIG~SGAGKSTLiR~iN~ 54 (339)
T COG1135 19 VTALDDVSLEIPKG-------EIFGIIGYSGAGKSTLLRLINL 54 (339)
T ss_pred eeeeccceEEEcCC-------cEEEEEcCCCCcHHHHHHHHhc
Confidence 46899999999999 9999999999999999999844
No 338
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.81 E-value=1.1e-05 Score=67.19 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=34.1
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
-.+..-..++++||.+.+| +.=+|.||||+||||+|-.|
T Consensus 13 VsF~GF~Aln~ls~~v~~G-------elr~lIGpNGAGKTT~mD~I 51 (249)
T COG4674 13 VSFGGFKALNDLSFSVDPG-------ELRVLIGPNGAGKTTLMDVI 51 (249)
T ss_pred EEEcceeeeeeeEEEecCC-------eEEEEECCCCCCceeeeeee
Confidence 3445667889999999999 99999999999999999876
No 339
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.80 E-value=2e-05 Score=77.15 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=32.5
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+|+||+|||||+|.++
T Consensus 470 ~~il~~i~l~i~~G-------~~vaivG~sGsGKSTL~~ll~ 504 (694)
T TIGR01846 470 PEVLSNLNLDIKPG-------EFIGIVGPSGSGKSTLTKLLQ 504 (694)
T ss_pred ccccccceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999 999999999999999999984
No 340
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=5.1e-05 Score=71.71 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.8
Q ss_pred eCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 171 IPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 171 vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+|+. ..++++++++++| +.++|+|++|+||||++..+
T Consensus 330 y~~g~~~l~~l~~t~~~g-------~~talvG~SGaGKSTLl~lL 367 (559)
T COG4988 330 YPDGKPALSDLNLTIKAG-------QLTALVGASGAGKSTLLNLL 367 (559)
T ss_pred cCCCCcccCCceeEecCC-------cEEEEECCCCCCHHHHHHHH
Confidence 4554 8999999999999 99999999999999999988
No 341
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.79 E-value=3e-05 Score=83.44 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=33.4
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
....++++++++.+| ++++|.||||+|||||||+++
T Consensus 942 ~k~aL~~lsl~I~~G-------ei~aLLG~NGAGKSTLLkiLa 977 (2272)
T TIGR01257 942 GRPAVDRLNITFYEN-------QITAFLGHNGAGKTTTLSILT 977 (2272)
T ss_pred CceEEEeeEEEEcCC-------cEEEEECCCCChHHHHHHHHh
Confidence 357899999999999 999999999999999999984
No 342
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.79 E-value=1.8e-05 Score=76.47 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=33.6
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++++++.+++| +.++|.||||+||||||++++.
T Consensus 37 ~~~iL~~vs~~i~~G-------e~~aI~G~sGsGKSTLL~~L~g 73 (617)
T TIGR00955 37 RKHLLKNVSGVAKPG-------ELLAVMGSSGAGKTTLMNALAF 73 (617)
T ss_pred ccccccCCEEEEeCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999 9999999999999999999853
No 343
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.78 E-value=3e-05 Score=65.25 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
++++|.||||+||||+|+++.+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~ 47 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLF 47 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999999864
No 344
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.77 E-value=3.1e-05 Score=62.80 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=38.6
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
..|++....+.+++++...| +.+++.||.|+|||+|||++-|+-
T Consensus 9 n~~yg~~q~lfdi~l~~~~g-------etlvllgpsgagkssllr~lnlle 52 (242)
T COG4161 9 NCFYGAHQALFDITLDCPEG-------ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred ccccccchheeeeeecCCCC-------CEEEEECCCCCchHHHHHHHHHHh
Confidence 45778888888888888888 999999999999999999998764
No 345
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.76 E-value=3.9e-05 Score=73.39 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=35.2
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++.++++++.+++| +.+.|+||||+|||||+|+++-+
T Consensus 404 ~~~~ll~~l~~~v~~G-------~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 404 DGQTLLSELNFEVRPG-------ERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred CCCeeeccceeeeCCC-------CEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999 99999999999999999999643
No 346
>KOG0056|consensus
Probab=97.76 E-value=3.6e-05 Score=71.75 Aligned_cols=40 Identities=38% Similarity=0.580 Sum_probs=37.2
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..|-|..+.+++++|++.+| +.++|+||.|+||||.||.+
T Consensus 545 F~Y~p~k~vl~disF~v~pG-------ktvAlVG~SGaGKSTimRlL 584 (790)
T KOG0056|consen 545 FAYDPGKPVLSDISFTVQPG-------KTVALVGPSGAGKSTIMRLL 584 (790)
T ss_pred EecCCCCceeecceEEecCC-------cEEEEECCCCCchhHHHHHH
Confidence 46678899999999999999 99999999999999999976
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.75 E-value=3.7e-05 Score=80.60 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=33.4
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+|+++++++++| ++++|.||||+||||||++++-
T Consensus 776 ~~iL~~vs~~i~~G-------e~~aI~G~sGaGKSTLL~~Lag 811 (1394)
T TIGR00956 776 RVILNNVDGWVKPG-------TLTALMGASGAGKTTLLNVLAE 811 (1394)
T ss_pred cEeeeCCEEEEECC-------EEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999 9999999999999999999853
No 348
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=3.1e-05 Score=72.59 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=39.2
Q ss_pred eEEeccccCcccCCCceeeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++++ +..|-.++ ..+++++|++++| ++++|.|+.||||||+++++.
T Consensus 336 ~l~~~~v-------sF~y~~~~~~~L~~~~l~l~~G-------EkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 336 ALELRNV-------SFTYPGQQTKALKNFNLTLAQG-------EKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred eeeeccc-------eeecCCCccchhhccceeecCC-------CeEEEECCCCCCHHHHHHHHH
Confidence 5666665 23333333 4999999999999 999999999999999999885
No 349
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.73 E-value=3.7e-05 Score=80.96 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=32.8
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++++++|++++| ++++|+|||||||||++|++.-
T Consensus 399 ~vL~~isl~i~~G-------e~vaIvG~SGsGKSTLl~lL~g 433 (1466)
T PTZ00265 399 EIYKDLNFTLTEG-------KTYAFVGESGCGKSTILKLIER 433 (1466)
T ss_pred ceeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999 9999999999999999999843
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.72 E-value=2.7e-05 Score=81.58 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=32.9
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+|+++++.+++| ++++|.||||+|||||||+++.
T Consensus 74 ~~iL~~vs~~i~~G-------e~~aIlG~nGsGKSTLLk~LaG 109 (1394)
T TIGR00956 74 FDILKPMDGLIKPG-------ELTVVLGRPGSGCSTLLKTIAS 109 (1394)
T ss_pred ceeeeCCEEEEECC-------EEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999 9999999999999999999853
No 351
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.71 E-value=2.9e-05 Score=64.68 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=32.9
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...+.++++++..| +.+++.||+||||||+|+.++-+
T Consensus 18 ~~~le~vsL~ia~g-------e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 18 RSALEDVSLTIASG-------ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred hhhhhccceeecCC-------CEEEEEcCCCccHHHHHHHHhcC
Confidence 34788999999999 99999999999999999988543
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=97.70 E-value=2.8e-05 Score=81.75 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=33.5
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+|+++++.+++| ++++|.||||+|||||||+++
T Consensus 177 ~~~IL~~vs~~i~~G-------e~~~llGpnGSGKSTLLk~La 212 (1470)
T PLN03140 177 KLTILKDASGIIKPS-------RMTLLLGPPSSGKTTLLLALA 212 (1470)
T ss_pred cceeccCCeEEEeCC-------eEEEEEcCCCCCHHHHHHHHh
Confidence 456899999999999 999999999999999999984
No 353
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.70 E-value=2.3e-05 Score=65.35 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=34.7
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.+.+....+++++|+.+++| ++++|.||||+||||.+-++
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~G-------EiVGLLGPNGAGKTT~Fymi 50 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSG-------EIVGLLGPNGAGKTTTFYMI 50 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCC-------cEEEEECCCCCCceeEEEEE
Confidence 34556778889999999999 99999999999999987765
No 354
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.65 E-value=4.8e-05 Score=62.73 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=36.9
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+-++..-.|+++|++...| +++.|.|..|+|||||||.|-++
T Consensus 14 K~~G~~eVLKGvSL~A~~G-------dVisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAG-------DVISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred hhcccchhhcceeeecCCC-------CEEEEecCCCCchhHHHHHHHhh
Confidence 3456677899999999999 99999999999999999998654
No 355
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.60 E-value=6.8e-05 Score=61.33 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=30.9
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+|+++++.+++| +.++|+||.|+||||||-.++
T Consensus 24 ~IL~~V~L~v~~G-------e~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 24 SILKGVELVVKRG-------ETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred eEeecceEEecCC-------ceEEEEcCCCCcHHhHHHHHh
Confidence 5889999999999 999999999999999987653
No 356
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.60 E-value=3.5e-05 Score=64.99 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+..+.++++++..+ +++.|.|.||+||||||++++-
T Consensus 19 k~~l~~~sL~I~~g-------~FvtViGsNGAGKSTlln~iaG 54 (263)
T COG1101 19 KRALNGLSLEIAEG-------DFVTVIGSNGAGKSTLLNAIAG 54 (263)
T ss_pred HHHHhcCceeecCC-------ceEEEEcCCCccHHHHHHHhhC
Confidence 46888999999999 9999999999999999999853
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=97.59 E-value=5.4e-05 Score=79.62 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=33.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+|+++++.+++| ++++|.||||+|||||||+++.
T Consensus 893 ~~iL~~vs~~i~~G-------el~aL~G~sGaGKTTLL~~LaG 928 (1470)
T PLN03140 893 LQLLREVTGAFRPG-------VLTALMGVSGAGKTTLMDVLAG 928 (1470)
T ss_pred ceEeeCcEEEEECC-------eEEEEECCCCCCHHHHHHHHcC
Confidence 36899999999999 9999999999999999999854
No 358
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.59 E-value=6e-05 Score=79.37 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=32.9
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+..+|++++|++++| ++++|+||+||||||+++++
T Consensus 1180 ~~~vL~~lsl~i~~G-------~~vAIVG~SGsGKSTl~~LL 1214 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSK-------KTTAIVGETGSGKSTVMSLL 1214 (1466)
T ss_pred CCccccCeeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 446899999999999 99999999999999999988
No 359
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.56 E-value=4.4e-05 Score=62.69 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++|+||||+||||+|+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 899999999999999999884
No 360
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.56 E-value=5.1e-05 Score=70.83 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=28.3
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMR 212 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk 212 (229)
.|.++++++..| ++++|.||+||||||+||
T Consensus 21 vL~~Vsl~i~~G-------Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 21 ILVKFNKELPSS-------SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHhCCceeecCC-------CEEEEECCCCCCHHHHHh
Confidence 578899999999 999999999999999999
No 361
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.55 E-value=7.8e-05 Score=61.23 Aligned_cols=38 Identities=37% Similarity=0.657 Sum_probs=32.7
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+..++-+..+|..+..| +.+=++||||+||||||-.++
T Consensus 9 v~~~tRL~plS~qv~aG-------e~~HliGPNGaGKSTLLA~lA 46 (248)
T COG4138 9 VAESTRLGPLSGEVRAG-------EILHLVGPNGAGKSTLLARMA 46 (248)
T ss_pred ccccccccccccccccc-------eEEEEECCCCccHHHHHHHHh
Confidence 44567888889899888 999999999999999997663
No 362
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00014 Score=63.00 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=31.8
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++||+++.| +.++|+|.+||||||+-|++.
T Consensus 27 ~avd~Vsf~i~~g-------e~~glVGESG~GKSTlgr~i~ 60 (268)
T COG4608 27 KAVDGVSFSIKEG-------ETLGLVGESGCGKSTLGRLIL 60 (268)
T ss_pred EEecceeEEEcCC-------CEEEEEecCCCCHHHHHHHHH
Confidence 6788999999999 999999999999999999883
No 363
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.53 E-value=6.3e-05 Score=63.02 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++|+||||+||||+|+++.
T Consensus 29 ~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 29 GLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHhe
Confidence 799999999999999999985
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.52 E-value=9.2e-05 Score=78.37 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+|||||||++.
T Consensus 651 ~~~l~~isl~i~~G-------~~v~IvG~~GsGKSTLl~~l~ 685 (1522)
T TIGR00957 651 PPTLNGITFSIPEG-------ALVAVVGQVGCGKSSLLSALL 685 (1522)
T ss_pred CceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 36899999999999 999999999999999999984
No 365
>PTZ00243 ABC transporter; Provisional
Probab=97.52 E-value=7.9e-05 Score=78.97 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| +.++|+||||+||||||+++.
T Consensus 673 ~~iL~~isl~i~~G-------~~~~IiG~nGsGKSTLL~~i~ 707 (1560)
T PTZ00243 673 KVLLRDVSVSVPRG-------KLTVVLGATGSGKSTLLQSLL 707 (1560)
T ss_pred ceeEeeeEEEECCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 46899999999999 999999999999999999984
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.52 E-value=6.8e-05 Score=79.18 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.4
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+|||||||+++
T Consensus 439 ~~~l~~i~l~i~~G-------~~~~I~G~~GsGKSTLl~~l~ 473 (1490)
T TIGR01271 439 TPVLKNISFKLEKG-------QLLAVAGSTGSGKSSLLMMIM 473 (1490)
T ss_pred CcceeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45799999999999 999999999999999999984
No 367
>PLN03232 ABC transporter C family member; Provisional
Probab=97.51 E-value=9.3e-05 Score=78.20 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=39.0
Q ss_pred eEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
-|+++++ +..|-|+ ...|+++++++++| +.++|+|++|+||||+++.+
T Consensus 1234 ~I~f~nV-------sf~Y~~~~~~vL~~isl~I~~G-------ekvaIVG~SGSGKSTL~~lL 1282 (1495)
T PLN03232 1234 SIKFEDV-------HLRYRPGLPPVLHGLSFFVSPS-------EKVGVVGRTGAGKSSMLNAL 1282 (1495)
T ss_pred cEEEEEE-------EEEECCCCCcccccceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 3666655 2344354 46899999999999 99999999999999999987
No 368
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.49 E-value=9.5e-05 Score=61.14 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.4
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++.+||+.+.+ +.++|.|-||||||||-|+++
T Consensus 28 AV~~vSFtL~~~-------QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 28 AVKPVSFTLREG-------QTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred cccceEEEecCC-------cEEEEEccCCCcHhHHHHHHh
Confidence 456788888888 999999999999999999985
No 369
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.48 E-value=0.0001 Score=63.32 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...+|+||||+||||+|+.+..+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999999544
No 370
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.47 E-value=9.8e-05 Score=60.93 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.5
Q ss_pred ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+++++..| +.++|.||.|+||||||..|+-
T Consensus 18 fdl~v~~g-------e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 18 FDLTVPAG-------EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEeecCC-------cEEEEECCCCccHHHHHHHHHh
Confidence 44556667 9999999999999999999954
No 371
>PLN03130 ABC transporter C family member; Provisional
Probab=97.44 E-value=0.00013 Score=77.62 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=38.7
Q ss_pred eEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
-|+++++ ...|-|+ ..+|++++|++++| ++++|+|++|+||||+++.+
T Consensus 1237 ~I~f~nV-------sf~Y~~~~~~VL~~is~~I~~G-------ekVaIVGrSGSGKSTLl~lL 1285 (1622)
T PLN03130 1237 SIKFEDV-------VLRYRPELPPVLHGLSFEISPS-------EKVGIVGRTGAGKSSMLNAL 1285 (1622)
T ss_pred cEEEEEE-------EEEeCCCCCceecceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 3666654 2344344 36899999999999 99999999999999999987
No 372
>PTZ00243 ABC transporter; Provisional
Probab=97.43 E-value=0.00014 Score=77.22 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=31.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.+|++++|++++| ++++|+|++|+||||+++++
T Consensus 1324 ~vL~~vsf~I~~G-------ekVaIVGrTGSGKSTLl~lL 1356 (1560)
T PTZ00243 1324 LVLRGVSFRIAPR-------EKVGIVGRTGSGKSTLLLTF 1356 (1560)
T ss_pred ceeecceEEECCC-------CEEEEECCCCCCHHHHHHHH
Confidence 4899999999999 99999999999999999988
No 373
>KOG0927|consensus
Probab=97.43 E-value=0.00013 Score=68.52 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=33.8
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++.-..+.+.+|.+.+| +.++|.|||||||||+|+.++
T Consensus 85 ~~g~~l~kd~~~El~~g-------~rygLiG~nG~Gkst~L~~i~ 122 (614)
T KOG0927|consen 85 FHGVELIKDVTLELNRG-------RRYGLIGPNGSGKSTFLRAIA 122 (614)
T ss_pred cCCceeeeeeeEEecCC-------ceEEEEcCCCCcHhHHHHHHh
Confidence 45567788899999999 999999999999999999985
No 374
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00017 Score=63.84 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=31.4
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..++++||++++| ++++|+|-+||||||+.+++
T Consensus 19 ~av~~vs~~i~~G-------E~lgiVGESGsGKS~~~~ai 51 (316)
T COG0444 19 KAVDGVSFELKKG-------EILGIVGESGSGKSVLAKAI 51 (316)
T ss_pred EEEeceeEEEcCC-------cEEEEEcCCCCCHHHHHHHH
Confidence 5889999999999 99999999999999999987
No 375
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.40 E-value=0.00023 Score=67.33 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=31.8
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++||++.+| ++++|+|..||||||+.|+++
T Consensus 305 ~Av~~VSf~l~~G-------E~lglVGeSGsGKSTlar~i~ 338 (539)
T COG1123 305 KAVDDVSFDLREG-------ETLGLVGESGSGKSTLARILA 338 (539)
T ss_pred eeeeeeeeEecCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4688999999999 999999999999999999983
No 376
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.38 E-value=0.00018 Score=76.13 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=32.9
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...|++++|++++| +.++|+|++|+|||||++++.
T Consensus 1232 ~~vL~~is~~I~~G-------ekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGG-------QRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred cceeeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999 999999999999999999983
No 377
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.38 E-value=0.00016 Score=76.61 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=32.2
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+..|++++|++++| ++++|+|++|+||||+++++
T Consensus 1299 ~~vL~~is~~I~~G-------ekiaIVGrTGsGKSTL~~lL 1332 (1522)
T TIGR00957 1299 DLVLRHINVTIHGG-------EKVGIVGRTGAGKSSLTLGL 1332 (1522)
T ss_pred cccccceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999 99999999999999999987
No 378
>PLN03232 ABC transporter C family member; Provisional
Probab=97.35 E-value=0.00021 Score=75.59 Aligned_cols=34 Identities=12% Similarity=0.377 Sum_probs=32.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
...++++++++++| +.++|+||+||||||||+.+
T Consensus 630 ~~vL~~inl~i~~G-------e~vaIvG~sGSGKSTLl~lL 663 (1495)
T PLN03232 630 KPTLSDINLEIPVG-------SLVAIVGGTGEGKTSLISAM 663 (1495)
T ss_pred CceeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999 99999999999999999988
No 379
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.31 E-value=0.00028 Score=56.66 Aligned_cols=37 Identities=27% Similarity=0.542 Sum_probs=33.3
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.|.+-.+.+++++|.+| +++-|.||.||||||||--+
T Consensus 12 l~g~cLLa~~n~Tia~G-------eivtlMGPSGcGKSTLls~~ 48 (213)
T COG4136 12 LPGSCLLANVNFTIAKG-------EIVTLMGPSGCGKSTLLSWM 48 (213)
T ss_pred CCCceEEEeeeEEecCC-------cEEEEECCCCccHHHHHHHH
Confidence 46677888899999999 99999999999999999866
No 380
>PLN03130 ABC transporter C family member; Provisional
Probab=97.29 E-value=0.00028 Score=75.14 Aligned_cols=37 Identities=19% Similarity=0.447 Sum_probs=33.5
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
...++++++++++| +.++|+||+|+||||||+.+ |..
T Consensus 630 ~~vL~~inl~i~~G-------e~vaIvG~sGSGKSTLl~lLlG~~ 667 (1622)
T PLN03130 630 RPTLSNINLDVPVG-------SLVAIVGSTGEGKTSLISAMLGEL 667 (1622)
T ss_pred CceeeceeEEecCC-------CEEEEECCCCCCHHHHHHHHHHhh
Confidence 46899999999999 99999999999999999988 443
No 381
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.24 E-value=0.00029 Score=59.69 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++|+||||+|||||++.+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~ 54 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLE 54 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34799999999999999999874
No 382
>KOG0055|consensus
Probab=97.11 E-value=0.00036 Score=71.21 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=32.7
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
|+-.+|++++|++++| +.++|+||+||||||+++.+
T Consensus 364 pdv~Il~g~sl~i~~G-------~~valVG~SGsGKST~i~LL 399 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSG-------QTVALVGPSGSGKSTLIQLL 399 (1228)
T ss_pred CcchhhCCeEEEeCCC-------CEEEEECCCCCCHHHHHHHH
Confidence 4446889999999999 99999999999999999876
No 383
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.07 E-value=0.00034 Score=62.05 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=23.6
Q ss_pred ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+.+..+ ..++|+||+|+||||+|+.+.
T Consensus 137 l~~~v~~~-------~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 137 LRLAIASR-------KNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred HHHHhhCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 33455566 899999999999999999763
No 384
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.07 E-value=0.00058 Score=60.26 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.3
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
..+++|.||||+||||+++.+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 378999999999999999987
No 385
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.07 E-value=0.00065 Score=64.34 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=32.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
..++++||++.+| +.++|+|-.||||||+.+++ |++
T Consensus 23 ~~v~~vsf~v~~G-------E~lgIvGESGsGKSt~a~~i~gll 59 (539)
T COG1123 23 PAVRDVSFEVEPG-------EILGIVGESGSGKSTLALALMGLL 59 (539)
T ss_pred eeeecceEEecCC-------cEEEEEcCCCCCHHHHHHHHhccC
Confidence 5889999999999 99999999999999999877 543
No 386
>KOG0061|consensus
Probab=97.06 E-value=0.00058 Score=66.16 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=34.3
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+...+|++++..+++| +.++|.||.|+||||||+.++
T Consensus 41 ~~k~iL~~vsg~~~~G-------el~AimG~SGsGKtTLL~~La 77 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPG-------ELLAIMGPSGSGKTTLLNALA 77 (613)
T ss_pred ccceeeeCcEEEEecC-------eEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999 999999999999999999885
No 387
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.06 E-value=0.00048 Score=64.47 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=31.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..+.+++|.+.+| +.++|.||.|+|||||.|++
T Consensus 350 pil~~isF~l~~G-------~~lgIIGPSgSGKSTLaR~l 382 (580)
T COG4618 350 PILKGISFALQAG-------EALGIIGPSGSGKSTLARLL 382 (580)
T ss_pred cceecceeEecCC-------ceEEEECCCCccHHHHHHHH
Confidence 6889999999999 99999999999999999987
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.00077 Score=67.99 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=29.4
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|++++|++..| ++++|||+||+|||||++-+-
T Consensus 622 ~Lk~vsl~Ip~G-------eiv~VtGvsGSGKSTLl~~~l 654 (924)
T TIGR00630 622 NLKNITVSIPLG-------LFTCITGVSGSGKSTLINDTL 654 (924)
T ss_pred CcCceEEEEeCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 478899999999 999999999999999999553
No 389
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.91 E-value=0.001 Score=61.24 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=33.4
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
....+.++++.+++| ++++|+|++|+||||+|+++.-.
T Consensus 395 eryvlr~vNL~ikpG-------dvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 395 ERYVLRNLNLEIKPG-------DVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred eeeeeeceeeEecCC-------CeEEEEecCCCCcchHHHHHHHH
Confidence 345788999999999 99999999999999999998443
No 390
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.83 E-value=0.00098 Score=60.50 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+||||+||||+|+.+
T Consensus 135 glilI~GpTGSGKTTtL~aL 154 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAI 154 (358)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 79999999999999999885
No 391
>KOG0059|consensus
Probab=96.81 E-value=0.001 Score=67.01 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=33.1
Q ss_pred eeeCCee-EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 169 TYIPNST-VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 169 ~~vp~~~-~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..++... .++++++.++++ ++.++.||||+||||++|++
T Consensus 572 k~y~~~~~Av~~ls~~V~~g-------ecfgLLG~NGAGKtT~f~ml 611 (885)
T KOG0059|consen 572 KVYGGKDGAVRGLSFAVPPG-------ECFGLLGVNGAGKTTTFKML 611 (885)
T ss_pred eeecchhhhhcceEEEecCC-------ceEEEecCCCCCchhhHHHH
Confidence 3444333 788999999999 99999999999999999976
No 392
>KOG0219|consensus
Probab=96.81 E-value=0.00048 Score=67.11 Aligned_cols=69 Identities=14% Similarity=0.015 Sum_probs=54.7
Q ss_pred cCCCCCceEEeccccCcccCCCc--eeeCCeeEe-cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHh
Q psy13262 146 GLEEPHPYISALESLYPCATGDQ--TYIPNSTVI-GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222 (229)
Q Consensus 146 ~~~~~~~~i~~~~~~hpll~~~~--~~vp~~~~l-~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~ 222 (229)
.++.+||+++..+ +||++..+. .+.+++..+ .| +...-..|+++++|++|||.+||-.+.|++
T Consensus 617 l~~~rHp~lE~Qd-~~~fIpNdv~le~~~~~~~IiTG-------------pNMGGKSTyir~~Gvi~lmAQIGcfVPce~ 682 (902)
T KOG0219|consen 617 LKQSRHPVLEGQD-EIPFIPNDVVLEKGKCRMLIITG-------------PNMGGKSTYIRQVGVIVLMAQIGCFVPCES 682 (902)
T ss_pred HHhcccchhhccc-cCCCCCCccccccCCceEEEEeC-------------CCcCccchhhhhhhHHHHHHHhCCceehhh
Confidence 4667899998876 899997544 334777644 44 224556899999999999999999999999
Q ss_pred cCCCcc
Q psy13262 223 MENPQL 228 (229)
Q Consensus 223 ~G~~v~ 228 (229)
+++||+
T Consensus 683 A~i~Iv 688 (902)
T KOG0219|consen 683 ATISIV 688 (902)
T ss_pred cCCchh
Confidence 999986
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.73 E-value=0.0017 Score=57.95 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++++++||||+||||++..++.. +++.|--|
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~~V 145 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK--YKAQGKKV 145 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH--HHhcCCeE
Confidence 389999999999999999988654 34555443
No 394
>PRK09183 transposase/IS protein; Provisional
Probab=96.73 E-value=0.0018 Score=56.16 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
+.++|+||+|+|||+|...+|.... +.|..|
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v 133 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKV 133 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeE
Confidence 8899999999999999999865533 456544
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0019 Score=59.74 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
++++|+||||+||||+++.++-..++
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~ 217 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVI 217 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999988654433
No 396
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.69 E-value=0.0014 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
.+.+|||-||+||||||..|+...
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhc
Confidence 799999999999999999987543
No 397
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.68 E-value=0.0014 Score=67.24 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
.+.+|+||||+||||+|..|+++.
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL 50 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYAL 50 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 599999999999999999997664
No 398
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.67 E-value=0.0014 Score=60.93 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=28.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++ +.+.+| ++++|.||||+||||++++++
T Consensus 144 ~aID~l-l~I~~G-------Q~igI~G~sGaGKSTLl~~I~ 176 (434)
T PRK07196 144 NAINGL-LTIGKG-------QRVGLMAGSGVGKSVLLGMIT 176 (434)
T ss_pred eeccce-EeEecc-------eEEEEECCCCCCccHHHHHHh
Confidence 356677 888888 999999999999999999874
No 399
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.66 E-value=0.0023 Score=60.28 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
++++++||||+||||++..++-..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 799999999999999999887543
No 400
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.66 E-value=0.0016 Score=66.89 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
.+++|+||||+||||+|..|+++.+
T Consensus 31 ~l~~I~G~tGaGKStildai~~aLy 55 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLLDAICLALY 55 (1047)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7999999999999999999987643
No 401
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.65 E-value=0.0018 Score=61.65 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
...+|+||||+||||+|..|..+.
T Consensus 28 g~~~i~G~NG~GKStll~aI~~~l 51 (562)
T PHA02562 28 KKTLITGKNGAGKSTMLEALTFAL 51 (562)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999999997654
No 402
>KOG0055|consensus
Probab=96.65 E-value=0.0014 Score=67.04 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=32.4
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
|+-.++++++|++++| +.++|+||.||||||.+-++
T Consensus 1001 P~~~Il~~l~l~i~~G-------qTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAG-------QTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred CCchhhcCCcEEecCC-------CEEEEECCCCCCHHHHHHHH
Confidence 6667899999999999 99999999999999987654
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.63 E-value=0.0021 Score=68.46 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=28.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~ 213 (229)
.|++++|++..| ++++|+|+||+|||||++-
T Consensus 610 ~Lk~isl~Ip~G-------eiv~VtG~nGSGKSTLl~~ 640 (1809)
T PRK00635 610 NLKDLTISLPLG-------RLTVVTGVSGSGKSSLIND 640 (1809)
T ss_pred CccceEEEEcCC-------cEEEEEcCCCCCHHHHHHH
Confidence 478999999999 9999999999999999993
No 404
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.59 E-value=0.0025 Score=64.48 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=29.6
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++++++..| ++++|+|+||+|||||++.+.
T Consensus 624 ~L~~isl~Ip~G-------eivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 624 NLKNVDVEIPLG-------KFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CcCceEEEEeCC-------CEEEEEcCCCCCHHHHHHHHH
Confidence 367888999999 999999999999999999764
No 405
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.58 E-value=0.002 Score=55.21 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||||+||||+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999999773
No 406
>KOG0054|consensus
Probab=96.56 E-value=0.0023 Score=66.66 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=40.2
Q ss_pred eEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
-|++++. +-.|-|+ +.+|+++++.++++ +.++|+|..|+||||++.++
T Consensus 1138 ~I~f~~~-------~~RYrp~lp~VLk~is~~I~p~-------eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1138 EIEFEDL-------SLRYRPNLPLVLKGISFTIKPG-------EKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred eEEEEEe-------EEEeCCCCcchhcCceEEEcCC-------ceEEEeCCCCCCHHHHHHHH
Confidence 4556554 2466676 68999999999999 99999999999999998876
No 407
>PF10240 DUF2464: Protein of unknown function (DUF2464); InterPro: IPR018798 FAM125A and FAM125B (also known as Multivesicular body subunit 12) interacts with CD2AP and CIN85/SH3KBP1, and is thought to be involved in the ligand-mediated internalization and down-regulation of EGF receptor [].; PDB: 3TOW_A.
Probab=96.56 E-value=0.0049 Score=53.27 Aligned_cols=75 Identities=29% Similarity=0.490 Sum_probs=44.3
Q ss_pred CCCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeeccEEEEEeecccccCCCcEEEEeEEecccCCCCc
Q psy13262 11 PDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPD 90 (229)
Q Consensus 11 ~~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~ 90 (229)
.++.-|++++++.++...|.||+.|++|.|. . .. ..| .|+||+ |-..++...--|.||.+++.....|.
T Consensus 57 ~~~~Vv~di~ii~~k~~~P~Gy~~i~~t~dt-~-~~-------a~r-KkrLCv-K~~pr~sa~~AV~DI~i~sksK~~p~ 125 (251)
T PF10240_consen 57 TPGNVVTDIQIIDEKDPIPHGYSYISETVDT-K-EK-------ALR-KKRLCV-KLSPRGSAETAVTDIIICSKSKQAPP 125 (251)
T ss_dssp GG-EEEEEEEEEETTS---TT-EE--B-TTT----B---------S-SEEEEE-EEEEGGG-S-EEEEEEEEETT----T
T ss_pred CCCCEEEEEEEecCCCCCCCCcEeccccccc-h-hh-------hhc-ceEEEE-EeeeccchhhheeeEEEeccCCcCCC
Confidence 3567799999999999999999999999998 1 11 233 455665 44445667888999999998887888
Q ss_pred hhhHHH
Q psy13262 91 GFCLIA 96 (229)
Q Consensus 91 ~y~~l~ 96 (229)
+|+.+.
T Consensus 126 ~yt~~G 131 (251)
T PF10240_consen 126 GYTCAG 131 (251)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 887654
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.49 E-value=0.0027 Score=59.02 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=29.0
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++.++++.|. =.+.+++++.||||-|||||.|+++
T Consensus 349 ~k~~g~F~L~V~~G~--i~~gEvigilGpNgiGKTTFvk~LA 388 (591)
T COG1245 349 KKTYGDFKLEVEEGE--IYDGEVIGILGPNGIGKTTFVKLLA 388 (591)
T ss_pred eeecCceEEEecCCe--eecceEEEEECCCCcchHHHHHHHh
Confidence 334556666665442 1234899999999999999999885
No 409
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.003 Score=63.94 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
..+.+|+||||+||||+|-.|.++.
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~AL 49 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFAL 49 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3799999999999999999997764
No 410
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.46 E-value=0.0025 Score=43.81 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.8
Q ss_pred EEEEeCCCCChHHHHHHHHH
Q psy13262 197 LLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 197 ~~ltGpN~~GKStlLk~i~l 216 (229)
++|+|+.|+||||+.+.+.-
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998853
No 411
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.46 E-value=0.0023 Score=56.61 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++|+||+|+|||||++.++-.
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999988654
No 412
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.0035 Score=57.24 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
.+++|+||||+||||++..++....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999998865543
No 413
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0026 Score=58.48 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=36.7
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..|-|+..+|.+++|++..| ..++++||.|+||||.+|.+
T Consensus 270 F~y~~~r~iL~~isf~i~~g-------~tvAiVg~SG~gKsTI~rll 309 (497)
T COG5265 270 FAYDPRRPILNGISFTIPLG-------KTVAIVGESGAGKSTILRLL 309 (497)
T ss_pred eeccccchhhcCccccccCc-------cEEEEEeCCCCcHHHHHHHH
Confidence 35678899999999999999 99999999999999999976
No 414
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.43 E-value=0.0032 Score=56.41 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=28.1
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++.+ +.+.+| ++++|.|+||+||||||++++
T Consensus 58 ~aiD~l-~~i~~G-------qri~I~G~sG~GKTtLl~~Ia 90 (326)
T cd01136 58 RAIDGL-LTVGKG-------QRLGIFAGSGVGKSTLLGMIA 90 (326)
T ss_pred EEEeee-eEEcCC-------cEEEEECCCCCChHHHHHHHh
Confidence 356666 777777 999999999999999999885
No 415
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.40 E-value=0.003 Score=61.64 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++|.||||+||||+|+.+.++
T Consensus 29 ~~~~i~G~Ng~GKttll~ai~~~ 51 (650)
T TIGR03185 29 PIILIGGLNGAGKTTLLDAIQLA 51 (650)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998553
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.39 E-value=0.003 Score=55.19 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++|.||||+|||||||.++
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLA 132 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh
Confidence 3689999999999999999984
No 417
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.35 E-value=0.0038 Score=47.05 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||.|+|||++++.++-.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998644
No 418
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=96.34 E-value=0.0033 Score=58.31 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=28.9
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++++ +.+..| ++++|.|+||+||||||++++-
T Consensus 134 ~~id~l-~~i~~G-------q~~~I~G~sG~GKStLl~~I~~ 167 (422)
T TIGR02546 134 RAIDGL-LTCGEG-------QRIGIFAGAGVGKSTLLGMIAR 167 (422)
T ss_pred eeehhh-ccccCC-------CEEEEECCCCCChHHHHHHHhC
Confidence 356677 778788 9999999999999999998853
No 419
>PRK05922 type III secretion system ATPase; Validated
Probab=96.34 E-value=0.0033 Score=58.40 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=24.1
Q ss_pred ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+.+| ++++|+||||+||||||++++
T Consensus 152 l~I~~G-------qrigI~G~nG~GKSTLL~~Ia 178 (434)
T PRK05922 152 LTLGKG-------QRIGVFSEPGSGKSSLLSTIA 178 (434)
T ss_pred EEEcCC-------cEEEEECCCCCChHHHHHHHh
Confidence 566677 999999999999999999885
No 420
>PRK08149 ATP synthase SpaL; Validated
Probab=96.31 E-value=0.004 Score=57.75 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=28.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++ +.+.+| ++++|.|+||+||||||++++
T Consensus 140 ~aid~l-l~i~~G-------q~i~I~G~sG~GKTTLl~~i~ 172 (428)
T PRK08149 140 RAIDGL-LTCGVG-------QRMGIFASAGCGKTSLMNMLI 172 (428)
T ss_pred EEEeee-eeEecC-------CEEEEECCCCCChhHHHHHHh
Confidence 466677 788888 999999999999999999875
No 421
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.30 E-value=0.0036 Score=59.52 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++||||.|+||||++|.++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La 66 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLA 66 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999875
No 422
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.30 E-value=0.0043 Score=48.56 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++|.|+.|+|||||.|.++-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 7999999999999999998854
No 423
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.29 E-value=0.0045 Score=64.95 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++|+||||+||||+|..+..+
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~a 51 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYI 51 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999999998543
No 424
>PLN02796 D-glycerate 3-kinase
Probab=96.27 E-value=0.0038 Score=56.32 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-+++|.|++||||||+++.+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~ 121 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALV 121 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 578999999999999999874
No 425
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.27 E-value=0.0037 Score=56.32 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||+|+||||+|+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999763
No 426
>KOG0066|consensus
Probab=96.25 E-value=0.0033 Score=58.34 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=25.8
Q ss_pred CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+-++.|-.| ++.+|+||||-|||||||-|+-
T Consensus 282 nA~L~Iv~G-------RRYGLVGPNG~GKTTLLkHIa~ 312 (807)
T KOG0066|consen 282 NASLTIVYG-------RRYGLVGPNGMGKTTLLKHIAA 312 (807)
T ss_pred ccceEEEec-------ceecccCCCCCchHHHHHHHHh
Confidence 445556666 9999999999999999999864
No 427
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.23 E-value=0.0043 Score=57.67 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.9
Q ss_pred ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+..| ++++|.||||+||||||++++
T Consensus 157 l~i~~G-------qrigI~G~sG~GKSTLL~~I~ 183 (444)
T PRK08972 157 LTVGKG-------QRMGLFAGSGVGKSVLLGMMT 183 (444)
T ss_pred EEEcCC-------CEEEEECCCCCChhHHHHHhc
Confidence 566667 999999999999999999885
No 428
>PRK14974 cell division protein FtsY; Provisional
Probab=96.23 E-value=0.0055 Score=55.21 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
..+++++||||+||||++..++. .+.+.|..|
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V 171 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSV 171 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence 47999999999999999998874 345666554
No 429
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.22 E-value=0.0035 Score=66.92 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=29.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..+.++++++.+| ++++|||+||+|||||++.+
T Consensus 949 ~~lk~isl~i~~g-------ei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 949 HNLKHIDLSLPRN-------ALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred ccccceeEEecCC-------cEEEEECCCCCChhHHHHHH
Confidence 3577889999999 99999999999999988766
No 430
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.22 E-value=0.0048 Score=65.12 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
.+++|+|+||+||||+|+.+..+.
T Consensus 28 ~~~~l~G~NGaGKSTll~ai~~~l 51 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (1486)
T ss_pred CeEEEECCCCCCHHHHHHHHHccc
Confidence 599999999999999999885443
No 431
>PLN02165 adenylate isopentenyltransferase
Probab=96.20 E-value=0.0046 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...+++|+||||+|||++...++-.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3479999999999999999887543
No 432
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.20 E-value=0.0065 Score=54.21 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=29.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+-+.+.+|+++.| ++.+|.|=+|||||||+|.+
T Consensus 42 vGv~~~sl~v~~G-------eIfViMGLSGSGKSTLvR~~ 74 (386)
T COG4175 42 VGVNDASLDVEEG-------EIFVIMGLSGSGKSTLVRLL 74 (386)
T ss_pred EeeccceeeecCC-------eEEEEEecCCCCHHHHHHHH
Confidence 4556788889888 99999999999999999988
No 433
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.0043 Score=61.31 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++++||||+||||++..++-.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 89999999999999999888654
No 434
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.13 E-value=0.0095 Score=55.57 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=26.2
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++.+. .+.+| ++++|.||+|+||||||++++.
T Consensus 155 aID~L~-~I~~G-------qri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 155 VIDIFT-PLCAG-------QRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred Eeeeec-eecCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence 444442 56677 9999999999999999998754
No 435
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.13 E-value=0.0053 Score=57.24 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=27.1
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++.+ +.+.+| ++++|.|+||+||||||++++
T Consensus 153 ~iD~l-~~i~~G-------q~~~I~G~sG~GKStLl~~I~ 184 (440)
T TIGR01026 153 SIDGL-LTVGKG-------QRIGIFAGSGVGKSTLLGMIA 184 (440)
T ss_pred eeeec-cccCCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 45555 777777 999999999999999999875
No 436
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.10 E-value=0.006 Score=56.95 Aligned_cols=32 Identities=25% Similarity=0.162 Sum_probs=27.2
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++.+ +.+.+| ++++|.|+||+||||||++++
T Consensus 158 aID~l-~~I~~G-------qrigI~G~sG~GKSTLl~~I~ 189 (451)
T PRK05688 158 SINGL-LTVGRG-------QRLGLFAGTGVGKSVLLGMMT 189 (451)
T ss_pred eecce-EEecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 45556 777777 999999999999999999884
No 437
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.09 E-value=0.0045 Score=57.53 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=28.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++.+ +.+..| ++++|.|+||+||||+|++++
T Consensus 144 ~aID~l-l~i~~G-------qrigI~G~sG~GKSTLL~~I~ 176 (433)
T PRK07594 144 RAIDSV-ATCGEG-------QRVGIFSAPGVGKSTLLAMLC 176 (433)
T ss_pred eeeeee-eecCCC-------CEEEEECCCCCCccHHHHHhc
Confidence 466666 778888 999999999999999999874
No 438
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.07 E-value=0.006 Score=56.75 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=27.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++.+ +.+.+| ++++|.|+||+||||+|++++.
T Consensus 152 vid~l-~~i~~G-------q~~~I~G~sG~GKStLl~~Ia~ 184 (439)
T PRK06936 152 VIDGL-LTCGEG-------QRMGIFAAAGGGKSTLLASLIR 184 (439)
T ss_pred eeeee-EEecCC-------CEEEEECCCCCChHHHHHHHhc
Confidence 45556 677777 9999999999999999999864
No 439
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.04 E-value=0.0066 Score=56.58 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.4
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++++ +.+.+| ++++|.|+||+||||+|++++.
T Consensus 152 ~~ID~l-~~i~~G-------q~~~I~G~sG~GKTtLl~~ia~ 185 (441)
T PRK09099 152 RIVDGL-MTLGEG-------QRMGIFAPAGVGKSTLMGMFAR 185 (441)
T ss_pred eeccce-eeecCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 355666 777777 9999999999999999998853
No 440
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.0057 Score=57.02 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=27.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++ +.+.+| ++++|.|+||+||||||++++
T Consensus 148 vid~l-~~i~~G-------q~i~I~G~sG~GKStLl~~I~ 179 (438)
T PRK07721 148 AIDSL-LTVGKG-------QRVGIFAGSGVGKSTLMGMIA 179 (438)
T ss_pred hhhee-eeecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 45666 778888 999999999999999999875
No 441
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.01 E-value=0.0052 Score=55.55 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||.|+||||+|+.+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl 183 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLI 183 (344)
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 789999999999999999863
No 442
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.0081 Score=55.33 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.+.++|+||||+||||++..++.. +...|.-|
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkV 272 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTV 272 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcE
Confidence 479999999999999999988753 33445443
No 443
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.95 E-value=0.0067 Score=52.77 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.5
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+||+|+||||+|+.+
T Consensus 81 GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 68999999999999999875
No 444
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.93 E-value=0.0096 Score=56.50 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=30.8
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++.-..++++.+.. ++ ..++|.||+||||||+.|.++
T Consensus 268 ~~g~~RLIDN~~~~~-~~-------~ii~i~G~sgsGKst~a~~la 305 (512)
T PRK13477 268 RCGSTRLIDNVFLMK-RQ-------PIIAIDGPAGAGKSTVTRAVA 305 (512)
T ss_pred EeCCeEEEeeeEecc-CC-------cEEEEECCCCCCHHHHHHHHH
Confidence 456666777777755 44 799999999999999999886
No 445
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.93 E-value=0.01 Score=54.58 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=26.2
Q ss_pred CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++.+.+.+| +.++|+||.|+||||+++.++-
T Consensus 160 d~~~pig~G-------q~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 160 DLFAPIGKG-------QRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred eeEEEeCCC-------CEEEEECCCCCChhHHHHHHHH
Confidence 566667777 9999999999999999998643
No 446
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.87 E-value=0.0087 Score=55.43 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=25.1
Q ss_pred ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+.+.+| ++++|.|+||+||||||++++
T Consensus 133 ~~~~i~~G-------q~i~I~G~sG~GKTtLl~~I~ 161 (418)
T TIGR03498 133 TFLPLCRG-------QRLGIFAGSGVGKSTLLSMLA 161 (418)
T ss_pred eeccccCC-------cEEEEECCCCCChHHHHHHHh
Confidence 46667777 999999999999999998875
No 447
>KOG4000|consensus
Probab=95.87 E-value=0.013 Score=49.82 Aligned_cols=74 Identities=28% Similarity=0.582 Sum_probs=59.5
Q ss_pred CCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeeccEEEEEeecccccCCCcEEEEeEEecccCCCCch
Q psy13262 12 DDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDG 91 (229)
Q Consensus 12 ~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~~ 91 (229)
++.-|+.+.+++.+...|.||..|++|.|. +...|+ .+|||. |.+.+..+..-|.||.+.+.+-.-|.+
T Consensus 77 p~~Vv~~l~vI~~kdp~P~gf~~I~~TaDs--~eka~R--------Kk~lci-k~~pRd~v~~AI~dIii~gktK~aP~~ 145 (291)
T KOG4000|consen 77 PEYVVETLQVISDKDPPPKGFSQISRTADS--DEKAWR--------KKQLCI-KLSPRDTVTQAITDIIICGKTKAAPDG 145 (291)
T ss_pred cceeeEEEEEeecCCCCCccceeeeecccc--hHHhhh--------hceeEE-EecCCccHHhhheeeEEeeccccCCCC
Confidence 345689999999999999999999999886 233343 466765 566677788889999999999888998
Q ss_pred hhHHH
Q psy13262 92 FCLIA 96 (229)
Q Consensus 92 y~~l~ 96 (229)
|....
T Consensus 146 yt~aG 150 (291)
T KOG4000|consen 146 YTLAG 150 (291)
T ss_pred ceeec
Confidence 88654
No 448
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.86 E-value=0.014 Score=53.74 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=30.9
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
...+++++|++.+| +.++|+|-+|||||+...++
T Consensus 23 ~~aVk~isf~i~~G-------EtlAlVGESGSGKSvTa~si 56 (534)
T COG4172 23 VEAVKGISFDIEAG-------ETLALVGESGSGKSVTALSI 56 (534)
T ss_pred eEeeccceeeecCC-------CEEEEEecCCCCccHHHHHH
Confidence 45788999999999 99999999999999987766
No 449
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.86 E-value=0.0097 Score=55.04 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=27.5
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++.+ +.+.+| ++++|.|+||+||||||++++
T Consensus 126 ~~id~l-~~i~~G-------q~~~I~G~sG~GKTtLl~~I~ 158 (411)
T TIGR03496 126 RAINGL-LTVGRG-------QRMGIFAGSGVGKSTLLGMMA 158 (411)
T ss_pred Eeecce-EEEecC-------cEEEEECCCCCCHHHHHHHHh
Confidence 345555 778888 999999999999999998775
No 450
>KOG0018|consensus
Probab=95.83 E-value=0.009 Score=59.99 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=28.3
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..|-....++++ .++..|+||||||||-+|-.|...
T Consensus 13 KSYkGh~~iGPF-------------~~FTaIIGPNGSGKSNlMDAISFV 48 (1141)
T KOG0018|consen 13 KSYKGHQVIGPF-------------DRFTAIIGPNGSGKSNLMDAISFV 48 (1141)
T ss_pred ccccCceeecCc-------------hhceeeeCCCCCchHHHHHHHHHH
Confidence 344556677763 389999999999999999998653
No 451
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.82 E-value=0.011 Score=51.68 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++++++||+|+||||++.-++. .+++.|.-|
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V 103 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSV 103 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEE
Confidence 47999999999999999877764 346667554
No 452
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.82 E-value=0.0072 Score=53.32 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..+.|+|+||+||||||+.+
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l 124 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTET 124 (290)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 79999999999999999866
No 453
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.79 E-value=0.0078 Score=57.95 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
-+++|.||||||||||++.++-
T Consensus 66 iIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 6889999999999999998853
No 454
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.78 E-value=0.0078 Score=53.31 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||.|+||||+|+.+.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~ 153 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALL 153 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999864
No 455
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.77 E-value=0.0083 Score=55.79 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=27.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++++ +.+.+| ++++|.|+||+||||++++++-
T Consensus 147 aid~l-~~i~~G-------q~~~i~G~sG~GKStLl~~i~~ 179 (434)
T PRK08472 147 SIDGL-LTCGKG-------QKLGIFAGSGVGKSTLMGMIVK 179 (434)
T ss_pred Hhhhc-ceecCC-------CEEEEECCCCCCHHHHHHHHhh
Confidence 45566 777777 9999999999999999998853
No 456
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.75 E-value=0.012 Score=54.90 Aligned_cols=39 Identities=33% Similarity=0.375 Sum_probs=30.6
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|-+|.+.|.++. ..++| ++++|.||||-||||.||.++
T Consensus 83 RYg~NgFkL~~LP-~pr~G-------~V~GilG~NGiGKsTalkILa 121 (591)
T COG1245 83 RYGVNGFKLYRLP-TPRPG-------KVVGILGPNGIGKSTALKILA 121 (591)
T ss_pred eccCCceEEecCC-CCCCC-------cEEEEEcCCCccHHHHHHHHh
Confidence 5667777777653 23444 899999999999999999884
No 457
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.69 E-value=0.0075 Score=57.16 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=30.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++....+..+++.+..| +.++|+||||+||||++|.+.
T Consensus 193 v~Gq~~~~~al~laa~~G-------~~llliG~~GsGKTtLak~L~ 231 (506)
T PRK09862 193 VIGQEQGKRGLEITAAGG-------HNLLLIGPPGTGKTMLASRIN 231 (506)
T ss_pred EECcHHHHhhhheeccCC-------cEEEEECCCCCcHHHHHHHHh
Confidence 344455566677777777 899999999999999999884
No 458
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=95.66 E-value=0.008 Score=56.07 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.6
Q ss_pred ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+..| ++++|.|+||+||||||++++
T Consensus 170 l~I~~G-------qri~I~G~sG~GKTTLL~~Ia 196 (455)
T PRK07960 170 LTVGRG-------QRMGLFAGSGVGKSVLLGMMA 196 (455)
T ss_pred ccccCC-------cEEEEECCCCCCccHHHHHHh
Confidence 556666 999999999999999999875
No 459
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.64 E-value=0.011 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.-+++|.|++||||||+.+.+.
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~ 233 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALD 233 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3688899999999999999883
No 460
>PRK06820 type III secretion system ATPase; Validated
Probab=95.64 E-value=0.012 Score=54.79 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=27.3
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++.+ +.+..| ++++|.|+||+||||||++++.
T Consensus 153 aID~l-~~i~~G-------qri~I~G~sG~GKStLl~~I~~ 185 (440)
T PRK06820 153 AIDGI-LSCGEG-------QRIGIFAAAGVGKSTLLGMLCA 185 (440)
T ss_pred eecce-EEecCC-------CEEEEECCCCCChHHHHHHHhc
Confidence 45555 677777 9999999999999999998753
No 461
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.014 Score=53.43 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=24.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
++++|+||+|+||||++.-++.. +...|..|
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V 237 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTV 237 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeE
Confidence 89999999999999999888753 33445544
No 462
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.62 E-value=0.016 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++|+||+|+||||++..++..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999998766543
No 463
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.60 E-value=0.011 Score=48.98 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
.+++|.|++|+|||++|+++.+..+
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHH
Confidence 5899999999999999998755443
No 464
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.016 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
++++|+||+|+||||++..++....+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999887654333
No 465
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.49 E-value=0.014 Score=52.49 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
..+++|+|++|+|||||+..+.-. +...|..|
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~--l~~~g~~v 87 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH--LIEQGHKV 87 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH--HHHCCCeE
Confidence 379999999999999999876332 23445544
No 466
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.49 E-value=0.013 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+|++|+|||||++.+.-
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~ 63 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTG 63 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999988743
No 467
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.47 E-value=0.014 Score=53.97 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=27.2
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++.+ +.+..| ++++|.|+||+||||||++++
T Consensus 127 ~iD~l-~~i~~G-------qri~I~G~sG~GKTtLl~~i~ 158 (413)
T TIGR03497 127 AIDGL-LTIGKG-------QRVGIFAGSGVGKSTLLGMIA 158 (413)
T ss_pred eeeeE-EEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45666 777777 999999999999999999764
No 468
>PTZ00202 tuzin; Provisional
Probab=95.46 E-value=0.012 Score=54.88 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++|||++|+||||++|.+.
T Consensus 287 rivvLtG~~G~GKTTLlR~~~ 307 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSLCRSAV 307 (550)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999875
No 469
>KOG1970|consensus
Probab=95.43 E-value=0.013 Score=55.64 Aligned_cols=23 Identities=48% Similarity=0.696 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++.||||.||||||.+|.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLs 131 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLS 131 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHH
Confidence 34899999999999999999875
No 470
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.41 E-value=0.017 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+.+++.||||+||||+++.++..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 389999999999999999988543
No 471
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.38 E-value=0.013 Score=52.40 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+|+.|+||||+|+.+.-
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998753
No 472
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.38 E-value=0.013 Score=55.31 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+||+|+||||+|+.+
T Consensus 243 GlilitGptGSGKTTtL~a~ 262 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAA 262 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999864
No 473
>PRK06315 type III secretion system ATPase; Provisional
Probab=95.37 E-value=0.014 Score=54.47 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=27.1
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++++ +.+..| ++++|.|+||+||||++++++-
T Consensus 154 aID~~-l~i~~G-------q~i~I~G~sG~GKStLl~~I~~ 186 (442)
T PRK06315 154 CIDGM-LTVARG-------QRIGIFAGAGVGKSSLLGMIAR 186 (442)
T ss_pred EEecc-ccccCC-------cEEEEECCCCCCcchHHHHhhc
Confidence 34444 677777 9999999999999999998863
No 474
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.33 E-value=0.017 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++++|+.|.|||||++.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 899999999999999999873
No 475
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.32 E-value=0.015 Score=53.04 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+||.||||||+|+.+
T Consensus 150 GlilI~G~TGSGKTT~l~al 169 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASI 169 (372)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999875
No 476
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.28 E-value=0.015 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||-|+||||+|+.+.
T Consensus 128 ~~ili~G~tGSGKTT~l~all 148 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALL 148 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCccccchHHHHHh
Confidence 799999999999999998773
No 477
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.23 E-value=0.012 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+|++|+|||||++.++-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999998864
No 478
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.23 E-value=0.015 Score=56.57 Aligned_cols=21 Identities=48% Similarity=0.762 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++|+||+|+||||+++.++
T Consensus 111 ~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999985
No 479
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.21 E-value=0.02 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i 214 (229)
..+.++|+||.|+||||+.+.+
T Consensus 77 ~r~il~L~GPPGsGKStla~~L 98 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECL 98 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3478899999999999999987
No 480
>PF13245 AAA_19: Part of AAA domain
Probab=95.20 E-value=0.029 Score=39.48 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=16.1
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
+.++|+||.|+|||+++-..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~ 30 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAAR 30 (76)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 78889999999999554443
No 481
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.07 E-value=0.022 Score=53.08 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
++++|.|+||+||||||++++-
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~ 180 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLAR 180 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 9999999999999999998853
No 482
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.07 E-value=0.018 Score=51.56 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+|+.|+||||+|+.+.
T Consensus 145 ~nilI~G~tGSGKTTll~aL~ 165 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVI 165 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999863
No 483
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.05 E-value=0.02 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i 214 (229)
+...+++|||.||||||+|-++
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~ 278 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAA 278 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHH
Confidence 4579999999999999999865
No 484
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.03 E-value=0.021 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|.|++|+||||+|+.+.-
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g 48 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVG 48 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhC
Confidence 5799999999999999999853
No 485
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=94.99 E-value=0.02 Score=50.34 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.|+||+|||||++.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~ 182 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALL 182 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999873
No 486
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.96 E-value=0.012 Score=55.70 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=30.5
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++.......+++.+..+ ..++|.||||+||||++|.+.
T Consensus 194 v~Gq~~~~~al~~aa~~g-------~~vlliG~pGsGKTtlar~l~ 232 (499)
T TIGR00368 194 IKGQQHAKRALEIAAAGG-------HNLLLFGPPGSGKTMLASRLQ 232 (499)
T ss_pred hcCcHHHHhhhhhhccCC-------CEEEEEecCCCCHHHHHHHHh
Confidence 344555566666666666 899999999999999999884
No 487
>PRK00098 GTPase RsgA; Reviewed
Probab=94.94 E-value=0.022 Score=50.27 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++|+||+|||||++.+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 789999999999999999873
No 488
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.93 E-value=0.028 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
..+++||||.|+|||||+..++...
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 4799999999999999998776543
No 489
>PTZ00035 Rad51 protein; Provisional
Probab=94.85 E-value=0.028 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
+.+.|+||||+|||+|+.+++..+.
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhc
Confidence 8999999999999999998876654
No 490
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.83 E-value=0.016 Score=52.08 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|+.|+||||+|+.+
T Consensus 161 ~nili~G~tgSGKTTll~aL 180 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAA 180 (332)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 78999999999999999885
No 491
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.82 E-value=0.034 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
++++++||||+||||++-.++...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999988765443
No 492
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=94.78 E-value=0.018 Score=58.39 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=26.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlL 211 (229)
-.|+++++++..+ +.++|||+.|||||+|.
T Consensus 14 hNLKni~v~iP~~-------~l~v~TGvSGSGKSSLa 43 (943)
T PRK00349 14 HNLKNIDLDIPRD-------KLVVFTGLSGSGKSSLA 43 (943)
T ss_pred ccccccccccCCC-------ceEEEecCCCCCchhHH
Confidence 3578888888888 99999999999999985
No 493
>KOG0065|consensus
Probab=94.69 E-value=0.02 Score=59.30 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=0.0
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|++++..+++| -..+|.|++|+||||||..++
T Consensus 806 LL~~V~G~~kPG-------~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065|consen 806 LLNNVSGAFKPG-------VLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred hhhcCceEecCC-------ceeehhcCCCCchHHHHHHHh
No 494
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.67 E-value=0.028 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.++|+|+.|+|||||.+.++-
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 48999999999999999988764
No 495
>PRK06526 transposase; Provisional
Probab=94.66 E-value=0.042 Score=47.53 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|+||.|+|||++...++... ++.|..|.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a--~~~g~~v~ 130 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA--CQAGHRVL 130 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH--HHCCCchh
Confidence 789999999999999999887543 45566553
No 496
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.65 E-value=0.037 Score=51.46 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++. .+.+.+| ++++|.|+||+||||++++++.
T Consensus 146 aID~-ll~I~~G-------qri~I~G~sG~GKTtLl~~Ia~ 178 (432)
T PRK06793 146 SIDS-MLTIGIG-------QKIGIFAGSGVGKSTLLGMIAK 178 (432)
T ss_pred EEec-cceecCC-------cEEEEECCCCCChHHHHHHHhc
Confidence 3444 3677777 9999999999999999998854
No 497
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.59 E-value=0.032 Score=49.48 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=17.4
Q ss_pred CcEEEEEeCCCCChHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~ 213 (229)
...+.+|||.||||||.|-.
T Consensus 125 ~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CceEEEeCCCCCcHHHHHHH
Confidence 36999999999999998754
No 498
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.58 E-value=0.033 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
..++|.|+||.||||++|+++-+.
T Consensus 26 g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 26 GGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHhh
Confidence 578899999999999999995443
No 499
>PRK06851 hypothetical protein; Provisional
Probab=94.57 E-value=0.044 Score=49.96 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=24.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++++|+|+.|+||||++|.++- .|...|..|
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~--~~~~~g~~V 61 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGE--EFLEKGYDV 61 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence 38999999999999999997643 444446543
No 500
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.55 E-value=0.048 Score=46.90 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=25.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|+||.|.||||++..++.... .+.|.+|+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl 63 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVG 63 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEE
Confidence 8999999999999999998865433 33466654
Done!