Query psy13262
Match_columns 229
No_of_seqs 200 out of 2650
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:17:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tow_A Multivesicular BODY sub 99.8 5.3E-22 1.8E-26 156.1 3.7 111 14-126 2-115 (152)
2 3thx_B DNA mismatch repair pro 99.8 3.1E-20 1.1E-24 183.1 7.0 157 56-228 532-707 (918)
3 1wb9_A DNA mismatch repair pro 99.8 5.4E-19 1.9E-23 172.5 9.0 153 58-228 471-641 (800)
4 2o8b_B DNA mismatch repair pro 99.7 1.9E-18 6.6E-23 172.3 8.4 168 55-228 634-823 (1022)
5 1ewq_A DNA mismatch repair pro 99.7 4E-17 1.4E-21 158.6 9.3 149 58-228 446-610 (765)
6 3thx_A DNA mismatch repair pro 99.7 3.5E-17 1.2E-21 161.8 7.8 156 58-228 520-696 (934)
7 2pcj_A ABC transporter, lipopr 98.8 2.5E-09 8.5E-14 89.3 5.2 48 153-215 4-51 (224)
8 1g6h_A High-affinity branched- 98.8 3.8E-09 1.3E-13 89.9 5.2 49 152-215 6-54 (257)
9 4g1u_C Hemin import ATP-bindin 98.8 4.3E-09 1.5E-13 90.2 5.4 49 152-215 10-58 (266)
10 1ji0_A ABC transporter; ATP bi 98.8 4E-09 1.4E-13 88.9 5.1 49 152-215 5-53 (240)
11 1b0u_A Histidine permease; ABC 98.8 4.5E-09 1.5E-13 89.8 5.0 49 152-215 5-53 (262)
12 2ihy_A ABC transporter, ATP-bi 98.8 5.3E-09 1.8E-13 90.3 5.1 49 152-215 20-68 (279)
13 2zu0_C Probable ATP-dependent 98.8 6.2E-09 2.1E-13 89.2 5.4 50 152-216 19-68 (267)
14 1vpl_A ABC transporter, ATP-bi 98.8 5.5E-09 1.9E-13 89.1 5.0 49 152-215 14-62 (256)
15 3gfo_A Cobalt import ATP-bindi 98.8 5E-09 1.7E-13 90.3 4.5 49 152-215 6-55 (275)
16 2olj_A Amino acid ABC transpor 98.7 6.4E-09 2.2E-13 89.0 4.9 48 153-215 24-71 (263)
17 2d2e_A SUFC protein; ABC-ATPas 98.7 9.1E-09 3.1E-13 87.2 5.6 41 169-216 11-51 (250)
18 1sgw_A Putative ABC transporte 98.7 8E-09 2.7E-13 85.8 4.2 47 153-215 10-56 (214)
19 3fvq_A Fe(3+) IONS import ATP- 98.7 1.4E-08 4.6E-13 90.8 5.6 49 153-216 4-52 (359)
20 3tif_A Uncharacterized ABC tra 98.7 9.6E-09 3.3E-13 86.4 4.1 35 174-215 18-52 (235)
21 2nq2_C Hypothetical ABC transp 98.7 1.2E-08 4E-13 86.8 4.7 40 169-215 12-52 (253)
22 2ff7_A Alpha-hemolysin translo 98.7 1.4E-08 4.9E-13 86.0 4.8 36 173-215 21-56 (247)
23 1mv5_A LMRA, multidrug resista 98.6 1.3E-08 4.6E-13 85.8 3.7 36 173-215 14-49 (243)
24 2cbz_A Multidrug resistance-as 98.6 1.4E-08 4.9E-13 85.4 3.8 36 173-215 17-52 (237)
25 3rlf_A Maltose/maltodextrin im 98.6 2.5E-08 8.5E-13 89.7 5.5 42 168-216 10-51 (381)
26 2ixe_A Antigen peptide transpo 98.6 1.6E-08 5.3E-13 86.9 4.0 48 153-215 16-66 (271)
27 2yz2_A Putative ABC transporte 98.6 2.3E-08 7.8E-13 85.6 4.9 35 174-215 20-54 (266)
28 2pze_A Cystic fibrosis transme 98.6 1.9E-08 6.5E-13 84.2 3.9 36 173-215 20-55 (229)
29 2yyz_A Sugar ABC transporter, 98.6 3.6E-08 1.2E-12 88.0 5.4 41 169-216 11-51 (359)
30 1z47_A CYSA, putative ABC-tran 98.6 2.5E-08 8.7E-13 88.9 4.3 49 152-215 13-62 (355)
31 1g29_1 MALK, maltose transport 98.6 4.3E-08 1.5E-12 87.9 5.6 41 169-216 11-51 (372)
32 1v43_A Sugar-binding transport 98.6 4.5E-08 1.5E-12 87.8 5.4 41 168-215 18-58 (372)
33 2it1_A 362AA long hypothetical 98.6 4.4E-08 1.5E-12 87.6 5.1 40 170-216 12-51 (362)
34 2pjz_A Hypothetical protein ST 98.6 3.2E-08 1.1E-12 84.7 4.0 34 174-215 18-51 (263)
35 3tui_C Methionine import ATP-b 98.6 5E-08 1.7E-12 87.2 5.1 51 151-216 22-76 (366)
36 2ghi_A Transport protein; mult 98.5 3.5E-08 1.2E-12 84.2 3.7 34 175-215 34-67 (260)
37 3d31_A Sulfate/molybdate ABC t 98.5 3.9E-08 1.3E-12 87.4 3.7 39 170-216 10-48 (348)
38 3nh6_A ATP-binding cassette SU 98.5 9.2E-08 3.2E-12 83.6 5.4 48 153-215 53-101 (306)
39 3gd7_A Fusion complex of cysti 98.5 7.5E-08 2.6E-12 86.8 4.5 49 153-216 19-69 (390)
40 1oxx_K GLCV, glucose, ABC tran 98.5 3.6E-08 1.2E-12 87.8 2.4 40 170-216 12-53 (353)
41 2qi9_C Vitamin B12 import ATP- 98.4 7.3E-08 2.5E-12 81.8 3.1 34 175-215 14-47 (249)
42 2jeo_A Uridine-cytidine kinase 98.4 1.5E-07 5E-12 79.0 3.6 38 172-216 10-47 (245)
43 2bbs_A Cystic fibrosis transme 98.4 1.4E-07 4.8E-12 81.8 2.9 35 174-215 51-85 (290)
44 1htw_A HI0065; nucleotide-bind 98.3 2.2E-07 7.7E-12 73.4 3.5 39 172-217 18-56 (158)
45 2iw3_A Elongation factor 3A; a 98.3 1.5E-06 5.1E-11 86.3 7.9 40 169-215 443-482 (986)
46 3lnc_A Guanylate kinase, GMP k 98.2 4.2E-07 1.4E-11 75.2 2.6 34 175-215 15-48 (231)
47 3b5x_A Lipid A export ATP-bind 98.2 9.5E-07 3.2E-11 83.3 4.8 35 174-215 356-390 (582)
48 3b60_A Lipid A export ATP-bind 98.1 1E-06 3.4E-11 83.1 3.8 35 174-215 356-390 (582)
49 2yl4_A ATP-binding cassette SU 98.1 1.1E-06 3.8E-11 83.0 4.1 34 175-215 358-391 (595)
50 2v9p_A Replication protein E1; 98.1 6.7E-07 2.3E-11 78.1 2.3 36 174-216 113-148 (305)
51 1yqt_A RNAse L inhibitor; ATP- 98.1 2.5E-06 8.4E-11 79.9 6.1 34 175-215 300-333 (538)
52 3qf4_B Uncharacterized ABC tra 98.1 8.9E-07 3E-11 83.8 3.0 35 173-214 367-401 (598)
53 3bk7_A ABC transporter ATP-bin 98.1 2.6E-06 9E-11 80.8 5.8 34 175-215 370-403 (607)
54 2iw3_A Elongation factor 3A; a 98.1 8.1E-07 2.8E-11 88.3 2.1 35 174-215 686-720 (986)
55 1yqt_A RNAse L inhibitor; ATP- 98.0 2.9E-06 9.8E-11 79.4 4.6 37 171-215 31-68 (538)
56 4a82_A Cystic fibrosis transme 98.0 1.5E-06 5.3E-11 81.8 2.5 34 174-214 354-387 (578)
57 3bk7_A ABC transporter ATP-bin 98.0 3.4E-06 1.2E-10 80.0 4.8 37 171-215 101-138 (607)
58 3ozx_A RNAse L inhibitor; ATP 98.0 4.8E-06 1.7E-10 77.9 5.6 34 175-215 282-315 (538)
59 3qf4_A ABC transporter, ATP-bi 98.0 2.5E-06 8.5E-11 80.6 2.9 34 174-214 356-389 (587)
60 2ehv_A Hypothetical protein PH 98.0 5.5E-06 1.9E-10 68.4 4.4 25 195-219 31-55 (251)
61 3kta_A Chromosome segregation 97.9 6.2E-06 2.1E-10 65.3 4.1 23 195-217 27-49 (182)
62 3j16_B RLI1P; ribosome recycli 97.9 7.2E-06 2.5E-10 77.8 4.2 39 169-215 86-124 (608)
63 3vaa_A Shikimate kinase, SK; s 97.9 7E-06 2.4E-10 66.3 3.6 37 172-215 10-46 (199)
64 3ozx_A RNAse L inhibitor; ATP 97.9 6.8E-06 2.3E-10 76.9 3.9 40 168-215 7-46 (538)
65 2eyu_A Twitching motility prot 97.9 5E-06 1.7E-10 70.8 2.7 32 176-216 16-47 (261)
66 2qag_B Septin-6, protein NEDD5 97.9 4.4E-06 1.5E-10 76.1 2.4 38 171-216 25-64 (427)
67 3ux8_A Excinuclease ABC, A sub 97.9 5.5E-06 1.9E-10 79.2 3.2 30 175-211 32-61 (670)
68 3b9q_A Chloroplast SRP recepto 97.9 1E-05 3.5E-10 70.3 4.4 33 178-217 91-123 (302)
69 2obl_A ESCN; ATPase, hydrolase 97.9 4.3E-06 1.5E-10 74.1 2.0 36 173-216 58-93 (347)
70 4a74_A DNA repair and recombin 97.8 1.1E-05 3.6E-10 65.8 4.1 23 195-217 26-48 (231)
71 3ux8_A Excinuclease ABC, A sub 97.8 4.7E-06 1.6E-10 79.7 2.1 33 176-215 337-369 (670)
72 1tf7_A KAIC; homohexamer, hexa 97.8 7.6E-06 2.6E-10 76.1 3.5 43 169-218 20-63 (525)
73 2npi_A Protein CLP1; CLP1-PCF1 97.8 6.8E-06 2.3E-10 75.5 2.3 33 179-218 130-163 (460)
74 4aby_A DNA repair protein RECN 97.7 5.1E-06 1.8E-10 74.3 0.7 35 176-218 50-84 (415)
75 1cr0_A DNA primase/helicase; R 97.7 1.2E-05 4E-10 68.9 2.9 44 176-227 24-67 (296)
76 2pt7_A CAG-ALFA; ATPase, prote 97.7 4E-06 1.4E-10 73.7 -0.3 33 176-215 160-192 (330)
77 3j16_B RLI1P; ribosome recycli 97.7 2E-05 6.9E-10 74.7 4.3 39 175-215 361-399 (608)
78 2yhs_A FTSY, cell division pro 97.7 2.2E-05 7.7E-10 72.7 4.4 33 178-217 284-316 (503)
79 2og2_A Putative signal recogni 97.7 2.3E-05 8E-10 69.7 4.4 32 179-217 149-180 (359)
80 2dpy_A FLII, flagellum-specifi 97.7 8.7E-06 3E-10 74.3 1.6 35 174-216 145-179 (438)
81 2gza_A Type IV secretion syste 97.7 9.9E-06 3.4E-10 72.0 1.9 31 178-215 166-196 (361)
82 3ec2_A DNA replication protein 97.7 1.9E-05 6.4E-10 62.5 3.1 32 195-227 39-70 (180)
83 1lw7_A Transcriptional regulat 97.7 2E-05 6.9E-10 69.8 3.4 33 177-216 158-192 (365)
84 3g5u_A MCG1178, multidrug resi 97.7 2.5E-05 8.6E-10 79.9 4.5 33 175-214 1047-1079(1284)
85 3euj_A Chromosome partition pr 97.7 2.4E-05 8.1E-10 72.3 3.9 34 176-217 19-52 (483)
86 3g5u_A MCG1178, multidrug resi 97.7 1.8E-05 6.2E-10 80.9 3.4 33 175-214 404-436 (1284)
87 1tq4_A IIGP1, interferon-induc 97.7 9.9E-06 3.4E-10 73.5 1.2 34 175-215 37-90 (413)
88 4eun_A Thermoresistant glucoki 97.7 2.7E-05 9.1E-10 62.9 3.6 21 195-215 30-50 (200)
89 3aez_A Pantothenate kinase; tr 97.6 2.8E-05 9.7E-10 67.8 4.0 21 195-215 91-111 (312)
90 1sq5_A Pantothenate kinase; P- 97.6 1.5E-05 5E-10 69.2 2.1 22 195-216 81-102 (308)
91 2qm8_A GTPase/ATPase; G protei 97.6 1.9E-05 6.4E-10 69.6 2.5 36 174-216 42-77 (337)
92 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 5.8E-05 2E-09 58.6 5.0 23 195-217 24-46 (149)
93 2bbw_A Adenylate kinase 4, AK4 97.6 4.2E-05 1.4E-09 63.7 3.6 21 195-215 28-48 (246)
94 3jvv_A Twitching mobility prot 97.5 3.9E-05 1.3E-09 68.2 3.1 23 195-217 124-147 (356)
95 3tow_A Multivesicular BODY sub 97.5 0.00012 4.3E-09 57.2 5.5 73 12-95 61-133 (152)
96 2o5v_A DNA replication and rep 97.5 6.8E-05 2.3E-09 66.7 4.1 24 195-218 27-50 (359)
97 3uie_A Adenylyl-sulfate kinase 97.5 5.2E-05 1.8E-09 61.1 3.0 22 195-216 26-47 (200)
98 4f4c_A Multidrug resistance pr 97.5 4.3E-05 1.5E-09 78.4 2.8 33 175-214 1093-1125(1321)
99 2oap_1 GSPE-2, type II secreti 97.4 2.7E-05 9.1E-10 72.5 0.8 30 178-214 251-280 (511)
100 2ewv_A Twitching motility prot 97.4 6.6E-05 2.2E-09 67.0 3.0 22 195-216 137-158 (372)
101 1rj9_A FTSY, signal recognitio 97.4 0.00011 3.8E-09 63.8 4.3 24 194-217 102-125 (304)
102 1p9r_A General secretion pathw 97.4 9.5E-05 3.2E-09 67.1 3.9 21 195-215 168-188 (418)
103 4f4c_A Multidrug resistance pr 97.4 7.5E-05 2.6E-09 76.6 3.4 35 173-214 430-464 (1321)
104 2ygr_A Uvrabc system protein A 97.4 5.1E-05 1.8E-09 75.4 2.1 32 176-214 657-688 (993)
105 3nwj_A ATSK2; P loop, shikimat 97.4 2.5E-05 8.4E-10 66.1 -0.1 38 172-216 30-70 (250)
106 1svm_A Large T antigen; AAA+ f 97.3 6.8E-05 2.3E-09 67.2 2.1 35 175-216 157-191 (377)
107 2vf7_A UVRA2, excinuclease ABC 97.3 5.7E-05 2E-09 74.1 1.7 35 176-217 512-548 (842)
108 4e22_A Cytidylate kinase; P-lo 97.3 0.00013 4.4E-09 61.3 3.6 21 195-215 28-48 (252)
109 3e70_C DPA, signal recognition 97.3 0.00016 5.4E-09 63.6 4.2 24 194-217 129-152 (328)
110 2r6f_A Excinuclease ABC subuni 97.3 5.2E-05 1.8E-09 75.1 1.1 32 176-214 639-670 (972)
111 3pih_A Uvrabc system protein A 97.3 0.00012 4.1E-09 72.4 3.7 32 176-214 599-630 (916)
112 2kjq_A DNAA-related protein; s 97.3 0.00013 4.3E-09 56.7 2.8 24 195-218 37-60 (149)
113 1nlf_A Regulatory protein REPA 97.2 0.00024 8.1E-09 60.2 4.3 37 170-217 17-53 (279)
114 1w1w_A Structural maintenance 97.2 0.00021 7.3E-09 64.5 4.1 24 195-218 27-50 (430)
115 1zu4_A FTSY; GTPase, signal re 97.2 0.00027 9.3E-09 61.8 4.6 42 178-228 96-137 (320)
116 1pzn_A RAD51, DNA repair and r 97.2 0.00026 8.8E-09 62.5 4.0 29 182-217 126-154 (349)
117 3auy_A DNA double-strand break 97.1 0.00045 1.6E-08 61.2 5.1 25 195-219 26-50 (371)
118 1pui_A ENGB, probable GTP-bind 97.1 0.00018 6.2E-09 57.6 2.0 26 182-214 21-46 (210)
119 3tqc_A Pantothenate kinase; bi 97.1 0.0004 1.4E-08 60.8 4.4 22 194-215 92-113 (321)
120 2yv5_A YJEQ protein; hydrolase 97.0 0.00026 9.1E-09 61.2 3.0 21 195-215 166-186 (302)
121 1in4_A RUVB, holliday junction 97.0 0.0003 1E-08 61.4 3.2 49 169-217 26-74 (334)
122 1vma_A Cell division protein F 97.0 0.00056 1.9E-08 59.4 4.6 23 195-217 105-127 (306)
123 2x8a_A Nuclear valosin-contain 97.0 0.0004 1.4E-08 59.1 3.4 22 195-216 45-66 (274)
124 1oix_A RAS-related protein RAB 97.0 0.00046 1.6E-08 54.8 3.5 22 195-216 30-51 (191)
125 4eaq_A DTMP kinase, thymidylat 96.9 0.00054 1.8E-08 56.8 3.7 22 195-216 27-48 (229)
126 1u0l_A Probable GTPase ENGC; p 96.9 0.00036 1.2E-08 60.2 2.6 21 195-215 170-190 (301)
127 1tf7_A KAIC; homohexamer, hexa 96.9 0.00065 2.2E-08 63.0 4.4 23 195-217 282-304 (525)
128 2qag_C Septin-7; cell cycle, c 96.9 0.00041 1.4E-08 62.9 2.9 32 171-215 21-52 (418)
129 4ad8_A DNA repair protein RECN 96.9 0.00023 8E-09 65.9 1.1 23 195-217 61-83 (517)
130 1ixz_A ATP-dependent metallopr 96.8 0.00065 2.2E-08 56.4 3.5 22 195-216 50-71 (254)
131 2rcn_A Probable GTPase ENGC; Y 96.8 0.00067 2.3E-08 60.3 3.6 21 195-215 216-236 (358)
132 1t9h_A YLOQ, probable GTPase E 96.8 0.00026 9E-09 61.6 0.9 23 195-217 174-197 (307)
133 1qhl_A Protein (cell division 96.8 0.00017 5.9E-09 60.1 -0.3 23 195-217 28-50 (227)
134 3cr8_A Sulfate adenylyltranfer 96.8 0.00053 1.8E-08 64.3 2.6 21 195-215 370-390 (552)
135 1ls1_A Signal recognition part 96.7 0.0013 4.5E-08 56.6 4.7 31 195-227 99-129 (295)
136 1iy2_A ATP-dependent metallopr 96.7 0.00094 3.2E-08 56.4 3.5 22 195-216 74-95 (278)
137 1udx_A The GTP-binding protein 96.6 0.00059 2E-08 61.8 1.8 31 178-215 148-178 (416)
138 2px0_A Flagellar biosynthesis 96.6 0.0014 4.9E-08 56.4 4.0 23 195-217 106-128 (296)
139 3lda_A DNA repair protein RAD5 96.6 0.0015 5.1E-08 58.8 4.1 26 195-220 179-204 (400)
140 1sxj_C Activator 1 40 kDa subu 96.5 0.00042 1.4E-08 60.3 -0.0 43 170-217 27-69 (340)
141 2p67_A LAO/AO transport system 96.4 0.0013 4.3E-08 57.7 2.6 22 195-216 57-78 (341)
142 3szr_A Interferon-induced GTP- 96.4 0.00095 3.2E-08 63.2 1.9 22 195-216 46-67 (608)
143 3k1j_A LON protease, ATP-depen 96.4 0.00058 2E-08 64.4 0.1 41 169-216 42-82 (604)
144 1m7g_A Adenylylsulfate kinase; 96.4 0.0022 7.4E-08 51.9 3.5 21 195-215 26-46 (211)
145 1lv7_A FTSH; alpha/beta domain 96.3 0.0027 9.3E-08 52.7 3.7 22 195-216 46-67 (257)
146 1odf_A YGR205W, hypothetical 3 96.2 0.0032 1.1E-07 54.1 4.0 21 194-214 31-51 (290)
147 1sxj_E Activator 1 40 kDa subu 96.2 0.0024 8.3E-08 55.3 3.2 21 196-216 38-58 (354)
148 2p5t_B PEZT; postsegregational 96.1 0.0026 8.9E-08 53.1 2.9 22 194-215 32-53 (253)
149 2www_A Methylmalonic aciduria 96.1 0.0035 1.2E-07 55.2 3.8 22 195-216 75-96 (349)
150 1gvn_B Zeta; postsegregational 96.1 0.0038 1.3E-07 53.4 3.9 22 194-215 33-54 (287)
151 2r6a_A DNAB helicase, replicat 96.0 0.0053 1.8E-07 55.8 4.7 33 195-228 204-236 (454)
152 1j8m_F SRP54, signal recogniti 96.0 0.0045 1.5E-07 53.4 3.8 32 195-228 99-130 (297)
153 3hr8_A Protein RECA; alpha and 96.0 0.0053 1.8E-07 54.4 4.3 23 195-217 62-84 (356)
154 3bos_A Putative DNA replicatio 95.9 0.005 1.7E-07 49.6 3.6 24 194-217 52-75 (242)
155 3cf0_A Transitional endoplasmi 95.9 0.0045 1.5E-07 53.0 3.3 22 195-216 50-71 (301)
156 3llm_A ATP-dependent RNA helic 95.8 0.007 2.4E-07 49.7 4.0 26 195-220 77-102 (235)
157 2w58_A DNAI, primosome compone 95.7 0.0065 2.2E-07 48.3 3.5 31 195-227 55-85 (202)
158 1fnn_A CDC6P, cell division co 95.7 0.0069 2.3E-07 52.7 3.8 20 196-215 46-65 (389)
159 2zr9_A Protein RECA, recombina 95.7 0.0089 3E-07 52.7 4.5 25 195-219 62-86 (349)
160 2qby_A CDC6 homolog 1, cell di 95.7 0.0062 2.1E-07 52.6 3.4 23 194-216 45-67 (386)
161 2ffh_A Protein (FFH); SRP54, s 95.7 0.0098 3.3E-07 53.9 4.8 32 195-228 99-130 (425)
162 4ag6_A VIRB4 ATPase, type IV s 95.6 0.0082 2.8E-07 53.2 4.1 31 195-227 36-66 (392)
163 3m6a_A ATP-dependent protease 95.6 0.0071 2.4E-07 56.4 3.8 23 195-217 109-131 (543)
164 1njg_A DNA polymerase III subu 95.6 0.0085 2.9E-07 47.7 3.8 22 195-216 46-67 (250)
165 2dhr_A FTSH; AAA+ protein, hex 95.6 0.0057 1.9E-07 56.6 3.0 22 195-216 65-86 (499)
166 1jbk_A CLPB protein; beta barr 95.6 0.0092 3.1E-07 45.9 3.7 22 195-216 44-65 (195)
167 1ypw_A Transitional endoplasmi 95.5 0.0063 2.2E-07 59.4 3.2 22 195-216 239-260 (806)
168 3b9p_A CG5977-PA, isoform A; A 95.5 0.0078 2.7E-07 50.8 3.4 22 195-216 55-76 (297)
169 3kl4_A SRP54, signal recogniti 95.5 0.0092 3.1E-07 54.3 4.0 32 194-227 97-128 (433)
170 2ius_A DNA translocase FTSK; n 95.3 0.0084 2.9E-07 55.6 3.1 34 180-220 160-193 (512)
171 4a1f_A DNAB helicase, replicat 95.3 0.014 4.6E-07 51.4 4.3 32 195-228 47-78 (338)
172 1sxj_D Activator 1 41 kDa subu 95.3 0.0041 1.4E-07 53.5 0.9 23 195-217 59-81 (353)
173 4fcw_A Chaperone protein CLPB; 95.3 0.013 4.3E-07 49.6 3.9 23 195-217 48-70 (311)
174 1l8q_A Chromosomal replication 95.2 0.0099 3.4E-07 51.0 3.1 23 194-216 37-59 (324)
175 2p65_A Hypothetical protein PF 95.1 0.011 3.7E-07 45.5 2.8 23 194-216 43-65 (187)
176 3h4m_A Proteasome-activating n 95.0 0.017 5.7E-07 48.4 3.9 22 195-216 52-73 (285)
177 3lxx_A GTPase IMAP family memb 95.0 0.014 4.9E-07 47.7 3.4 21 195-215 30-50 (239)
178 2f6r_A COA synthase, bifunctio 94.9 0.019 6.7E-07 48.7 4.1 22 194-215 75-96 (281)
179 3tlx_A Adenylate kinase 2; str 94.9 0.018 6.1E-07 47.7 3.8 21 195-215 30-50 (243)
180 2z4s_A Chromosomal replication 94.8 0.02 7E-07 51.8 4.2 25 194-218 130-154 (440)
181 3ice_A Transcription terminati 94.8 0.014 4.9E-07 52.5 2.9 32 179-217 166-197 (422)
182 2vf7_A UVRA2, excinuclease ABC 94.8 0.015 5E-07 57.1 3.1 30 176-212 25-54 (842)
183 2q6t_A DNAB replication FORK h 94.7 0.026 8.9E-07 51.0 4.4 33 195-228 201-233 (444)
184 2ce7_A Cell division protein F 94.6 0.024 8.1E-07 52.1 4.0 22 195-216 50-71 (476)
185 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.026 8.8E-07 46.4 3.9 22 195-216 40-61 (262)
186 2ged_A SR-beta, signal recogni 94.6 0.026 9E-07 43.9 3.8 21 195-215 49-69 (193)
187 2ygr_A Uvrabc system protein A 94.5 0.018 6E-07 57.4 3.1 29 176-211 35-63 (993)
188 3zvl_A Bifunctional polynucleo 94.5 0.021 7.2E-07 51.3 3.4 23 193-215 257-279 (416)
189 2r6f_A Excinuclease ABC subuni 94.5 0.018 6.1E-07 57.2 3.1 29 176-211 33-61 (972)
190 1mky_A Probable GTP-binding pr 94.5 0.02 7E-07 51.6 3.3 21 195-215 181-201 (439)
191 2qtf_A Protein HFLX, GTP-bindi 94.5 0.02 6.7E-07 50.7 3.1 21 195-215 180-200 (364)
192 1v5w_A DMC1, meiotic recombina 94.5 0.029 9.9E-07 49.0 4.1 26 195-220 123-148 (343)
193 3dm5_A SRP54, signal recogniti 94.3 0.035 1.2E-06 50.6 4.3 33 194-228 100-132 (443)
194 2chg_A Replication factor C sm 94.3 0.028 9.5E-07 44.2 3.3 22 195-216 39-60 (226)
195 3e1s_A Exodeoxyribonuclease V, 94.2 0.034 1.2E-06 52.2 4.3 32 195-228 205-236 (574)
196 2v1u_A Cell division control p 94.2 0.022 7.4E-07 49.3 2.8 23 194-216 44-66 (387)
197 1f6b_A SAR1; gtpases, N-termin 94.2 0.027 9.4E-07 44.6 3.0 21 195-215 26-46 (198)
198 3t34_A Dynamin-related protein 94.1 0.028 9.6E-07 49.2 3.2 21 195-215 35-55 (360)
199 2xxa_A Signal recognition part 94.1 0.044 1.5E-06 49.7 4.5 33 194-228 100-133 (433)
200 3syl_A Protein CBBX; photosynt 94.1 0.041 1.4E-06 46.4 4.1 23 195-217 68-90 (309)
201 3umf_A Adenylate kinase; rossm 94.1 0.039 1.3E-06 45.4 3.8 23 193-215 28-50 (217)
202 2qag_A Septin-2, protein NEDD5 94.0 0.022 7.7E-07 50.2 2.3 19 196-214 39-57 (361)
203 2e87_A Hypothetical protein PH 93.9 0.038 1.3E-06 48.4 3.7 20 195-214 168-187 (357)
204 2z43_A DNA repair and recombin 93.9 0.043 1.5E-06 47.4 3.9 24 195-218 108-131 (324)
205 2qby_B CDC6 homolog 3, cell di 93.9 0.043 1.5E-06 47.6 4.0 23 194-216 45-67 (384)
206 1d2n_A N-ethylmaleimide-sensit 93.8 0.039 1.3E-06 46.0 3.4 24 194-217 64-87 (272)
207 3eie_A Vacuolar protein sortin 93.7 0.047 1.6E-06 46.9 3.9 22 195-216 52-73 (322)
208 2r62_A Cell division protease 93.7 0.018 6.2E-07 47.8 1.2 22 195-216 45-66 (268)
209 3t15_A Ribulose bisphosphate c 93.7 0.052 1.8E-06 46.2 4.1 23 194-216 36-58 (293)
210 3pfi_A Holliday junction ATP-d 93.6 0.042 1.4E-06 47.1 3.4 22 194-215 55-76 (338)
211 3lv8_A DTMP kinase, thymidylat 93.6 0.05 1.7E-06 45.2 3.7 30 195-226 28-57 (236)
212 3n70_A Transport activator; si 93.6 0.044 1.5E-06 41.4 3.0 22 195-216 25-46 (145)
213 3bgw_A DNAB-like replicative h 93.6 0.052 1.8E-06 49.3 4.0 32 195-228 198-229 (444)
214 2zts_A Putative uncharacterize 93.5 0.079 2.7E-06 42.9 4.8 32 195-227 31-62 (251)
215 3bh0_A DNAB-like replicative h 93.5 0.065 2.2E-06 46.2 4.4 32 195-228 69-100 (315)
216 3p32_A Probable GTPase RV1496/ 93.5 0.068 2.3E-06 46.8 4.6 31 195-227 80-110 (355)
217 3uk6_A RUVB-like 2; hexameric 93.5 0.058 2E-06 46.7 4.1 23 195-217 71-93 (368)
218 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.055 1.9E-06 46.7 3.9 22 195-216 46-67 (322)
219 3v9p_A DTMP kinase, thymidylat 93.4 0.042 1.5E-06 45.4 3.0 21 195-215 26-46 (227)
220 1u94_A RECA protein, recombina 93.4 0.068 2.3E-06 47.2 4.4 31 195-227 64-94 (356)
221 2wsm_A Hydrogenase expression/ 93.4 0.06 2E-06 43.0 3.7 22 195-216 31-52 (221)
222 2oil_A CATX-8, RAS-related pro 93.3 0.052 1.8E-06 42.2 3.3 21 195-215 26-46 (193)
223 2i1q_A DNA repair and recombin 93.2 0.066 2.2E-06 45.9 3.9 27 195-221 99-125 (322)
224 3a8t_A Adenylate isopentenyltr 93.2 0.061 2.1E-06 47.3 3.7 21 195-215 41-61 (339)
225 1zcb_A G alpha I/13; GTP-bindi 93.2 0.073 2.5E-06 47.1 4.2 24 194-217 33-56 (362)
226 1ofh_A ATP-dependent HSL prote 93.1 0.054 1.9E-06 45.4 3.2 22 195-216 51-72 (310)
227 2qmh_A HPR kinase/phosphorylas 93.1 0.08 2.8E-06 43.2 4.0 20 195-214 35-54 (205)
228 3d8b_A Fidgetin-like protein 1 93.1 0.059 2E-06 47.1 3.5 23 194-216 117-139 (357)
229 2v3c_C SRP54, signal recogniti 93.0 0.045 1.6E-06 49.6 2.8 23 194-216 99-121 (432)
230 2hf9_A Probable hydrogenase ni 93.0 0.075 2.6E-06 42.5 3.8 22 195-216 39-60 (226)
231 1jr3_A DNA polymerase III subu 92.9 0.074 2.5E-06 45.8 3.8 22 195-216 39-60 (373)
232 2qgz_A Helicase loader, putati 92.9 0.1 3.6E-06 44.8 4.7 32 195-227 153-184 (308)
233 2o52_A RAS-related protein RAB 92.9 0.066 2.3E-06 42.2 3.2 21 195-215 26-46 (200)
234 1ypw_A Transitional endoplasmi 92.8 0.029 9.9E-07 54.7 1.1 23 195-217 512-534 (806)
235 2ew1_A RAS-related protein RAB 92.7 0.075 2.6E-06 42.3 3.4 21 195-215 27-47 (201)
236 2vhj_A Ntpase P4, P4; non- hyd 92.7 0.076 2.6E-06 46.5 3.6 23 195-217 124-146 (331)
237 1sxj_A Activator 1 95 kDa subu 92.7 0.081 2.8E-06 48.7 4.0 23 194-216 77-99 (516)
238 2il1_A RAB12; G-protein, GDP, 92.6 0.072 2.5E-06 41.7 3.1 21 195-215 27-47 (192)
239 2qp9_X Vacuolar protein sortin 92.5 0.078 2.7E-06 46.4 3.4 22 195-216 85-106 (355)
240 2xau_A PRE-mRNA-splicing facto 92.4 0.064 2.2E-06 52.1 3.1 22 195-216 110-131 (773)
241 2atv_A RERG, RAS-like estrogen 92.4 0.087 3E-06 41.2 3.4 21 195-215 29-49 (196)
242 3hws_A ATP-dependent CLP prote 92.4 0.071 2.4E-06 46.5 3.1 23 195-217 52-74 (363)
243 1gwn_A RHO-related GTP-binding 92.4 0.089 3E-06 41.9 3.4 21 195-215 29-49 (205)
244 2b6h_A ADP-ribosylation factor 92.3 0.11 3.6E-06 40.8 3.8 21 194-214 29-49 (192)
245 3pvs_A Replication-associated 92.3 0.079 2.7E-06 48.1 3.3 22 195-216 51-72 (447)
246 1hqc_A RUVB; extended AAA-ATPa 92.2 0.063 2.1E-06 45.5 2.5 22 195-216 39-60 (324)
247 2p5s_A RAS and EF-hand domain 92.2 0.092 3.1E-06 41.2 3.3 22 194-215 28-49 (199)
248 2j1l_A RHO-related GTP-binding 92.2 0.097 3.3E-06 41.8 3.5 21 195-215 35-55 (214)
249 2qen_A Walker-type ATPase; unk 92.1 0.091 3.1E-06 44.6 3.4 21 195-215 32-52 (350)
250 2f7s_A C25KG, RAS-related prot 92.1 0.097 3.3E-06 41.5 3.3 21 195-215 26-46 (217)
251 2fv8_A H6, RHO-related GTP-bin 92.1 0.11 3.6E-06 41.2 3.5 21 195-215 26-46 (207)
252 2qu8_A Putative nucleolar GTP- 92.0 0.11 3.9E-06 41.8 3.6 21 194-214 29-49 (228)
253 2gco_A H9, RHO-related GTP-bin 92.0 0.11 3.7E-06 40.9 3.4 21 195-215 26-46 (201)
254 2zan_A Vacuolar protein sortin 91.9 0.11 3.6E-06 47.0 3.7 23 194-216 167-189 (444)
255 4b4t_K 26S protease regulatory 91.9 0.12 4.1E-06 46.8 4.0 24 193-216 205-228 (428)
256 3end_A Light-independent proto 91.8 0.14 4.9E-06 43.3 4.3 34 194-229 41-74 (307)
257 2fna_A Conserved hypothetical 91.8 0.11 3.6E-06 44.2 3.4 21 195-215 31-51 (357)
258 2bjv_A PSP operon transcriptio 91.7 0.1 3.5E-06 43.2 3.1 22 195-216 30-51 (265)
259 4dhe_A Probable GTP-binding pr 91.6 0.068 2.3E-06 42.6 1.9 20 195-214 30-49 (223)
260 1tue_A Replication protein E1; 91.6 0.092 3.1E-06 43.1 2.7 21 195-215 59-79 (212)
261 1xp8_A RECA protein, recombina 91.6 0.16 5.5E-06 44.9 4.5 32 195-228 75-106 (366)
262 1iqp_A RFCS; clamp loader, ext 91.6 0.12 4.2E-06 43.4 3.6 23 195-217 47-69 (327)
263 4b4t_M 26S protease regulatory 91.6 0.13 4.5E-06 46.6 4.0 24 193-216 214-237 (434)
264 1um8_A ATP-dependent CLP prote 91.6 0.11 3.7E-06 45.5 3.3 22 195-216 73-94 (376)
265 4b4t_L 26S protease subunit RP 91.6 0.14 4.6E-06 46.6 4.0 24 193-216 214-237 (437)
266 4gzl_A RAS-related C3 botulinu 91.5 0.13 4.3E-06 40.7 3.4 21 195-215 31-51 (204)
267 2hup_A RAS-related protein RAB 91.4 0.13 4.4E-06 40.6 3.3 21 195-215 30-50 (201)
268 3vfd_A Spastin; ATPase, microt 91.3 0.13 4.4E-06 45.4 3.4 21 195-215 149-169 (389)
269 3co5_A Putative two-component 91.2 0.065 2.2E-06 40.4 1.3 21 195-215 28-48 (143)
270 3pxg_A Negative regulator of g 91.2 0.13 4.5E-06 46.7 3.6 24 194-217 201-224 (468)
271 2j37_W Signal recognition part 91.2 0.17 5.8E-06 46.8 4.2 32 194-227 101-132 (504)
272 1w5s_A Origin recognition comp 91.1 0.11 3.6E-06 45.4 2.7 22 194-215 50-73 (412)
273 3q3j_B RHO-related GTP-binding 91.1 0.14 4.9E-06 40.8 3.3 21 195-215 28-48 (214)
274 2iut_A DNA translocase FTSK; n 91.0 0.13 4.5E-06 48.2 3.4 26 195-220 215-240 (574)
275 3e2i_A Thymidine kinase; Zn-bi 90.9 0.16 5.6E-06 41.8 3.5 20 195-214 29-49 (219)
276 1q57_A DNA primase/helicase; d 90.9 0.085 2.9E-06 48.3 2.0 33 195-228 243-275 (503)
277 2chq_A Replication factor C sm 90.8 0.13 4.5E-06 43.1 3.0 23 195-217 39-61 (319)
278 3hu3_A Transitional endoplasmi 90.7 0.18 6.1E-06 46.3 4.0 23 194-216 238-260 (489)
279 2g3y_A GTP-binding protein GEM 90.6 0.17 5.8E-06 40.9 3.4 20 195-214 38-57 (211)
280 2r44_A Uncharacterized protein 90.5 0.097 3.3E-06 44.8 1.8 22 195-216 47-68 (331)
281 4b4t_J 26S protease regulatory 90.4 0.17 5.8E-06 45.5 3.4 24 193-216 181-204 (405)
282 1g8p_A Magnesium-chelatase 38 90.3 0.098 3.3E-06 44.7 1.7 22 195-216 46-67 (350)
283 2c9o_A RUVB-like 1; hexameric 90.3 0.21 7.3E-06 45.1 4.0 23 195-217 64-86 (456)
284 1sxj_B Activator 1 37 kDa subu 90.2 0.2 6.9E-06 42.0 3.6 21 196-216 44-64 (323)
285 1ko7_A HPR kinase/phosphatase; 90.2 0.25 8.5E-06 42.9 4.2 20 195-214 145-164 (314)
286 3cnl_A YLQF, putative uncharac 90.2 0.19 6.5E-06 42.2 3.4 20 196-215 101-120 (262)
287 3cio_A ETK, tyrosine-protein k 90.2 0.28 9.7E-06 41.8 4.5 34 194-229 104-138 (299)
288 3te6_A Regulatory protein SIR3 90.1 0.14 4.9E-06 44.4 2.6 22 194-215 45-66 (318)
289 1e9r_A Conjugal transfer prote 90.1 0.19 6.5E-06 44.8 3.5 31 195-227 54-84 (437)
290 1g41_A Heat shock protein HSLU 90.1 0.16 5.6E-06 46.1 3.1 22 195-216 51-72 (444)
291 3la6_A Tyrosine-protein kinase 89.8 0.33 1.1E-05 41.2 4.6 34 194-229 92-126 (286)
292 1bif_A 6-phosphofructo-2-kinas 89.8 0.21 7.3E-06 45.2 3.6 22 194-215 39-60 (469)
293 3u61_B DNA polymerase accessor 89.8 0.2 7E-06 42.5 3.3 22 194-215 48-69 (324)
294 3bfv_A CAPA1, CAPB2, membrane 89.7 0.35 1.2E-05 40.6 4.7 33 194-228 82-115 (271)
295 1h65_A Chloroplast outer envel 89.6 0.23 7.8E-06 41.4 3.4 21 195-215 40-60 (270)
296 1cip_A Protein (guanine nucleo 89.6 0.25 8.6E-06 43.4 3.8 23 195-217 33-55 (353)
297 1x6v_B Bifunctional 3'-phospho 89.6 0.25 8.4E-06 46.9 3.9 30 195-226 53-82 (630)
298 3def_A T7I23.11 protein; chlor 89.5 0.24 8.1E-06 41.1 3.5 21 195-215 37-57 (262)
299 2aka_B Dynamin-1; fusion prote 89.5 0.21 7.3E-06 41.7 3.2 21 195-215 27-47 (299)
300 1w36_D RECD, exodeoxyribonucle 89.5 0.26 9E-06 46.3 4.1 20 195-214 165-184 (608)
301 4b4t_H 26S protease regulatory 89.2 0.24 8.1E-06 45.3 3.4 24 193-216 242-265 (467)
302 1sky_E F1-ATPase, F1-ATP synth 89.2 0.44 1.5E-05 43.7 5.2 26 195-220 152-177 (473)
303 4b4t_I 26S protease regulatory 89.2 0.29 9.9E-06 44.4 3.9 24 193-216 215-238 (437)
304 1m8p_A Sulfate adenylyltransfe 89.1 0.27 9.1E-06 46.1 3.8 22 194-215 396-417 (573)
305 3cf2_A TER ATPase, transitiona 89.0 0.29 9.8E-06 47.8 4.0 23 193-215 237-259 (806)
306 1qvr_A CLPB protein; coiled co 88.8 0.2 6.9E-06 48.9 2.9 24 194-217 191-214 (854)
307 3fwy_A Light-independent proto 88.4 0.41 1.4E-05 41.3 4.3 33 194-228 48-80 (314)
308 2axn_A 6-phosphofructo-2-kinas 88.3 0.32 1.1E-05 44.9 3.8 22 194-215 35-56 (520)
309 3upu_A ATP-dependent DNA helic 88.3 0.41 1.4E-05 43.1 4.4 29 195-225 46-74 (459)
310 4b3f_X DNA-binding protein smu 88.2 0.38 1.3E-05 45.4 4.3 32 195-228 206-237 (646)
311 1z6t_A APAF-1, apoptotic prote 87.7 0.39 1.3E-05 44.3 3.9 23 193-215 146-168 (591)
312 3th5_A RAS-related C3 botulinu 87.5 0.11 3.6E-06 40.9 0.0 21 195-215 31-51 (204)
313 1ojl_A Transcriptional regulat 87.6 0.32 1.1E-05 41.5 3.1 22 195-216 26-47 (304)
314 3fkq_A NTRC-like two-domain pr 87.5 0.5 1.7E-05 41.4 4.3 35 193-229 142-177 (373)
315 3nbx_X ATPase RAVA; AAA+ ATPas 87.2 0.28 9.6E-06 45.2 2.6 22 195-216 42-63 (500)
316 1g5t_A COB(I)alamin adenosyltr 87.1 0.5 1.7E-05 38.2 3.7 33 195-229 29-61 (196)
317 3l0i_B RAS-related protein RAB 87.0 0.083 2.8E-06 41.5 -1.0 20 195-214 34-53 (199)
318 2gks_A Bifunctional SAT/APS ki 86.8 0.43 1.5E-05 44.4 3.7 32 194-227 372-403 (546)
319 1qvr_A CLPB protein; coiled co 86.2 0.42 1.4E-05 46.6 3.4 23 195-217 589-611 (854)
320 2oze_A ORF delta'; para, walke 86.0 0.55 1.9E-05 39.3 3.6 32 195-228 35-69 (298)
321 1r6b_X CLPA protein; AAA+, N-t 85.9 0.51 1.8E-05 45.2 3.8 24 194-217 207-230 (758)
322 1u0j_A DNA replication protein 85.8 0.57 1.9E-05 39.7 3.6 23 194-216 104-126 (267)
323 3io5_A Recombination and repai 85.6 0.91 3.1E-05 39.6 4.9 24 195-218 29-52 (333)
324 1azs_C GS-alpha; complex (lyas 85.5 0.63 2.2E-05 41.7 3.9 24 195-218 41-64 (402)
325 3cmw_A Protein RECA, recombina 85.3 0.65 2.2E-05 48.8 4.4 31 195-227 733-763 (1706)
326 3o47_A ADP-ribosylation factor 85.3 0.44 1.5E-05 41.1 2.7 20 195-214 166-185 (329)
327 3geh_A MNME, tRNA modification 84.8 0.59 2E-05 42.5 3.5 21 195-215 225-245 (462)
328 2wkq_A NPH1-1, RAS-related C3 84.8 0.62 2.1E-05 39.2 3.4 21 195-215 156-176 (332)
329 2gk6_A Regulator of nonsense t 84.8 0.73 2.5E-05 43.3 4.2 33 195-228 196-228 (624)
330 1r6b_X CLPA protein; AAA+, N-t 84.7 0.69 2.4E-05 44.3 4.0 23 195-217 489-511 (758)
331 4a9a_A Ribosome-interacting GT 84.7 0.51 1.8E-05 41.9 2.9 21 195-215 73-93 (376)
332 3pxi_A Negative regulator of g 84.6 0.6 2E-05 44.8 3.6 24 194-217 201-224 (758)
333 1knx_A Probable HPR(Ser) kinas 84.0 0.86 2.9E-05 39.4 4.0 17 195-211 148-164 (312)
334 3l0o_A Transcription terminati 83.7 0.87 3E-05 41.0 3.9 24 195-218 176-199 (427)
335 2wjy_A Regulator of nonsense t 83.7 0.83 2.8E-05 44.5 4.1 33 195-228 372-404 (800)
336 1g8f_A Sulfate adenylyltransfe 83.5 0.62 2.1E-05 43.1 3.0 21 195-215 396-416 (511)
337 2qpt_A EH domain-containing pr 83.5 0.71 2.4E-05 42.9 3.5 20 195-214 66-85 (550)
338 1puj_A YLQF, conserved hypothe 83.3 0.9 3.1E-05 38.4 3.8 21 195-215 121-141 (282)
339 1of1_A Thymidine kinase; trans 83.1 0.6 2.1E-05 41.5 2.7 21 195-215 50-70 (376)
340 3pxi_A Negative regulator of g 82.7 0.9 3.1E-05 43.6 3.9 24 195-218 522-545 (758)
341 3vkw_A Replicase large subunit 82.5 0.95 3.2E-05 41.1 3.7 22 193-214 160-181 (446)
342 3dpu_A RAB family protein; roc 82.3 0.75 2.6E-05 42.3 3.1 21 195-215 42-62 (535)
343 2x2e_A Dynamin-1; nitration, h 82.3 0.52 1.8E-05 40.9 1.9 20 195-214 32-51 (353)
344 3fgn_A Dethiobiotin synthetase 82.0 1.8 6.1E-05 36.1 5.1 33 193-227 25-58 (251)
345 1lnz_A SPO0B-associated GTP-bi 81.8 0.6 2.1E-05 40.7 2.2 20 195-214 159-178 (342)
346 2a5y_B CED-4; apoptosis; HET: 81.2 1.1 3.8E-05 41.2 3.8 22 194-215 152-173 (549)
347 2j9r_A Thymidine kinase; TK1, 80.5 1.7 5.8E-05 35.5 4.3 31 195-227 29-59 (214)
348 3gee_A MNME, tRNA modification 80.1 0.8 2.7E-05 41.8 2.4 20 195-214 234-253 (476)
349 3ec1_A YQEH GTPase; atnos1, at 79.6 1 3.5E-05 39.5 2.9 21 195-215 163-183 (369)
350 3f9v_A Minichromosome maintena 79.2 0.56 1.9E-05 44.0 1.1 21 195-215 328-348 (595)
351 2hjg_A GTP-binding protein ENG 78.7 1.5 5E-05 39.2 3.7 22 194-215 175-196 (436)
352 2j69_A Bacterial dynamin-like 78.6 1.2 4.2E-05 42.5 3.3 21 195-215 70-90 (695)
353 3gqb_A V-type ATP synthase alp 78.1 1.4 4.9E-05 41.1 3.5 21 195-215 222-242 (578)
354 3cmu_A Protein RECA, recombina 78.1 1.8 6E-05 46.4 4.5 31 195-227 384-414 (2050)
355 3h2y_A GTPase family protein; 77.3 1.2 4.2E-05 39.0 2.7 21 195-215 161-181 (368)
356 4akg_A Glutathione S-transfera 76.8 1.4 4.7E-05 48.5 3.3 22 195-216 924-945 (2695)
357 2xzl_A ATP-dependent helicase 76.3 2 6.9E-05 41.7 4.1 20 195-214 376-395 (802)
358 3lvq_E ARF-GAP with SH3 domain 76.3 1.6 5.3E-05 39.5 3.1 21 195-215 323-343 (497)
359 3cmw_A Protein RECA, recombina 76.2 2.3 7.8E-05 44.8 4.7 26 195-220 35-60 (1706)
360 3cmu_A Protein RECA, recombina 76.1 2.1 7.2E-05 45.8 4.4 25 195-219 1428-1452(2050)
361 3k9g_A PF-32 protein; ssgcid, 76.1 1.7 6E-05 35.5 3.2 31 195-228 28-59 (267)
362 1f5n_A Interferon-induced guan 75.1 1.6 5.5E-05 41.0 3.0 21 194-214 38-58 (592)
363 3b6e_A Interferon-induced heli 75.1 1.2 4E-05 34.8 1.7 24 195-218 49-72 (216)
364 2ck3_D ATP synthase subunit be 75.0 2.3 7.9E-05 38.9 3.9 24 195-218 154-177 (482)
365 1j3b_A ATP-dependent phosphoen 75.0 1.8 6E-05 40.2 3.1 17 195-211 226-242 (529)
366 3q5d_A Atlastin-1; G protein, 73.5 2.1 7.1E-05 38.9 3.2 23 193-215 66-88 (447)
367 1ii2_A Phosphoenolpyruvate car 73.3 2 6.8E-05 39.8 3.1 18 194-211 213-230 (524)
368 2pl3_A Probable ATP-dependent 73.3 3.3 0.00011 33.0 4.1 23 195-217 63-85 (236)
369 4dcu_A GTP-binding protein ENG 73.0 2.7 9.2E-05 37.7 3.9 23 193-215 194-216 (456)
370 3izq_1 HBS1P, elongation facto 72.5 2.1 7.2E-05 40.2 3.1 20 195-214 168-187 (611)
371 2c61_A A-type ATP synthase non 72.2 1.7 5.7E-05 39.8 2.2 23 195-217 153-175 (469)
372 3cf2_A TER ATPase, transitiona 71.6 2 6.9E-05 41.9 2.8 23 194-216 511-533 (806)
373 3vkg_A Dynein heavy chain, cyt 71.3 2.1 7.1E-05 47.8 3.0 21 195-215 907-927 (3245)
374 1xzp_A Probable tRNA modificat 71.1 0.84 2.9E-05 41.8 -0.0 21 195-215 244-264 (482)
375 2olr_A Phosphoenolpyruvate car 71.0 2.4 8.1E-05 39.4 3.0 18 194-211 241-258 (540)
376 2qp2_A Unknown protein; toxin, 70.5 3.9 0.00013 37.7 4.3 71 12-96 411-486 (511)
377 4db1_A Myosin-7; S1DC, cardiac 70.1 4 0.00014 39.6 4.5 21 194-214 171-191 (783)
378 3vr4_A V-type sodium ATPase ca 69.7 3.5 0.00012 38.7 3.8 21 195-215 233-253 (600)
379 1ytm_A Phosphoenolpyruvate car 69.1 2.6 8.8E-05 39.1 2.8 17 195-211 236-252 (532)
380 3sfz_A APAF-1, apoptotic pepti 68.5 3.1 0.00011 41.2 3.5 22 193-214 146-167 (1249)
381 3p26_A Elongation factor 1 alp 68.0 2.3 7.8E-05 38.5 2.2 21 195-215 34-54 (483)
382 1fx0_B ATP synthase beta chain 67.8 3.3 0.00011 38.1 3.2 24 195-218 166-189 (498)
383 1hv8_A Putative ATP-dependent 67.7 2.8 9.5E-05 35.2 2.6 19 195-213 45-63 (367)
384 1vt4_I APAF-1 related killer D 67.7 3 0.0001 42.2 3.1 22 194-215 150-171 (1221)
385 1lkx_A Myosin IE heavy chain; 67.1 3.7 0.00013 39.3 3.5 21 194-214 94-114 (697)
386 1w9i_A Myosin II heavy chain; 66.8 5.7 0.0002 38.5 4.8 21 194-214 172-192 (770)
387 4anj_A Unconventional myosin-V 66.4 5.8 0.0002 39.8 4.9 21 194-214 144-164 (1052)
388 2va8_A SSO2462, SKI2-type heli 66.1 4.6 0.00016 38.1 4.0 26 195-220 47-72 (715)
389 3iuy_A Probable ATP-dependent 66.0 4.1 0.00014 32.3 3.1 22 195-216 58-79 (228)
390 1w7j_A Myosin VA; motor protei 65.8 5.7 0.0002 38.6 4.6 21 194-214 156-176 (795)
391 1ihu_A Arsenical pump-driving 65.8 5.8 0.0002 36.7 4.5 32 195-228 328-359 (589)
392 1g8x_A Myosin II heavy chain f 65.6 6.4 0.00022 39.3 5.0 28 194-221 172-200 (1010)
393 3qq5_A Small GTP-binding prote 65.0 1.2 3.9E-05 40.2 -0.4 21 194-214 34-54 (423)
394 1rif_A DAR protein, DNA helica 64.8 4.4 0.00015 33.4 3.2 19 195-213 129-147 (282)
395 3vr4_D V-type sodium ATPase su 64.1 3.1 0.00011 37.9 2.2 21 195-215 152-172 (465)
396 2v26_A Myosin VI; calmodulin-b 63.5 4.7 0.00016 39.1 3.5 21 194-214 140-160 (784)
397 3gqb_B V-type ATP synthase bet 63.2 2.8 9.4E-05 38.3 1.7 21 195-215 148-168 (464)
398 2gxq_A Heat resistant RNA depe 63.0 4.8 0.00016 31.1 2.9 17 195-211 39-55 (207)
399 2r9v_A ATP synthase subunit al 62.9 4.2 0.00014 37.5 2.9 21 195-215 176-197 (515)
400 3mca_A HBS1, elongation factor 61.9 4.7 0.00016 37.7 3.1 20 195-214 178-197 (592)
401 2fz4_A DNA repair protein RAD2 61.7 6.8 0.00023 31.7 3.8 19 195-213 109-127 (237)
402 1kk8_A Myosin heavy chain, str 61.4 6.2 0.00021 38.6 3.9 21 194-214 169-189 (837)
403 3mfy_A V-type ATP synthase alp 61.3 3.3 0.00011 38.8 1.9 21 195-215 228-248 (588)
404 1vec_A ATP-dependent RNA helic 61.2 5.4 0.00019 30.8 3.0 16 195-210 41-56 (206)
405 2ycu_A Non muscle myosin 2C, a 60.8 7 0.00024 39.0 4.2 21 194-214 146-166 (995)
406 2qe7_A ATP synthase subunit al 60.6 4.7 0.00016 37.1 2.8 21 195-215 163-184 (502)
407 3ber_A Probable ATP-dependent 60.2 8.2 0.00028 31.3 4.0 27 195-221 81-107 (249)
408 3ez2_A Plasmid partition prote 60.0 7.8 0.00027 33.8 4.1 33 194-228 108-147 (398)
409 2dfs_A Myosin-5A; myosin-V, in 60.0 7 0.00024 39.3 4.2 21 194-214 156-176 (1080)
410 3ly5_A ATP-dependent RNA helic 59.3 6 0.0002 32.4 3.0 22 195-216 92-113 (262)
411 2zj8_A DNA helicase, putative 59.2 6.7 0.00023 37.1 3.7 26 195-220 40-65 (720)
412 4akg_A Glutathione S-transfera 59.0 4.4 0.00015 44.6 2.7 20 195-214 1268-1287(2695)
413 2i4i_A ATP-dependent RNA helic 58.7 8.5 0.00029 33.0 4.1 26 195-220 53-78 (417)
414 1qde_A EIF4A, translation init 58.6 6.3 0.00021 30.9 3.0 16 195-210 52-67 (224)
415 2ck3_A ATP synthase subunit al 58.6 5.3 0.00018 36.8 2.8 21 195-215 163-184 (510)
416 3pzx_A Formate--tetrahydrofola 58.3 11 0.00037 34.9 4.7 33 194-228 57-93 (557)
417 1fx0_A ATP synthase alpha chai 57.9 4.6 0.00016 37.2 2.3 21 195-215 164-185 (507)
418 4ido_A Atlastin-1; GTPase, GTP 57.4 6.3 0.00021 35.8 3.0 20 195-214 68-87 (457)
419 3fe2_A Probable ATP-dependent 57.3 10 0.00035 30.3 4.1 26 195-220 67-92 (242)
420 3eag_A UDP-N-acetylmuramate:L- 57.2 10 0.00035 32.2 4.3 28 195-226 109-136 (326)
421 1r5b_A Eukaryotic peptide chai 56.1 5.3 0.00018 36.0 2.4 20 195-214 44-63 (467)
422 2wv9_A Flavivirin protease NS2 55.4 5.5 0.00019 37.9 2.4 29 195-224 242-270 (673)
423 1wrb_A DJVLGB; RNA helicase, D 55.3 10 0.00035 30.4 3.8 22 195-216 61-82 (253)
424 3rc3_A ATP-dependent RNA helic 55.2 9.3 0.00032 36.3 4.0 15 195-209 156-170 (677)
425 3lk7_A UDP-N-acetylmuramoylala 54.8 12 0.0004 33.5 4.4 28 195-226 113-140 (451)
426 1kjw_A Postsynaptic density pr 54.1 6.9 0.00024 33.2 2.6 17 195-214 106-122 (295)
427 3oaa_A ATP synthase subunit al 53.8 7 0.00024 36.0 2.7 20 195-214 163-183 (513)
428 2z0m_A 337AA long hypothetical 53.4 9 0.00031 31.6 3.2 17 195-211 32-48 (337)
429 3dkp_A Probable ATP-dependent 52.4 12 0.00041 29.8 3.7 17 195-211 67-83 (245)
430 3ez9_A Para; DNA binding, wing 52.4 6.4 0.00022 34.5 2.2 32 195-228 112-150 (403)
431 1i84_S Smooth muscle myosin he 52.2 7.3 0.00025 39.5 2.8 21 194-214 169-189 (1184)
432 3zvr_A Dynamin-1; hydrolase, D 50.8 9.6 0.00033 36.9 3.3 20 195-214 52-71 (772)
433 1t6n_A Probable ATP-dependent 50.7 11 0.00039 29.3 3.3 17 195-211 52-68 (220)
434 2p6r_A Afuhel308 helicase; pro 49.7 6.4 0.00022 37.1 1.9 24 195-218 41-64 (702)
435 2oca_A DAR protein, ATP-depend 49.6 13 0.00044 33.2 3.8 19 195-213 129-147 (510)
436 3h1t_A Type I site-specific re 47.5 18 0.00062 33.1 4.5 28 195-224 199-226 (590)
437 2fwr_A DNA repair protein RAD2 47.5 13 0.00044 32.8 3.4 16 195-210 109-124 (472)
438 1s2m_A Putative ATP-dependent 47.2 9.2 0.00031 32.7 2.3 17 195-211 59-75 (400)
439 3hn7_A UDP-N-acetylmuramate-L- 46.9 18 0.00061 33.1 4.3 28 195-226 123-150 (524)
440 2oxc_A Probable ATP-dependent 46.3 14 0.00049 29.2 3.2 17 195-211 62-78 (230)
441 3pey_A ATP-dependent RNA helic 46.1 14 0.00046 31.2 3.2 18 195-212 45-62 (395)
442 3czq_A Putative polyphosphate 45.3 15 0.0005 31.6 3.2 20 195-214 87-106 (304)
443 1q0u_A Bstdead; DEAD protein, 44.2 10 0.00034 29.7 2.0 17 195-211 42-58 (219)
444 3fht_A ATP-dependent RNA helic 43.8 13 0.00044 31.7 2.7 17 195-211 65-81 (412)
445 4hv4_A UDP-N-acetylmuramate--L 43.6 23 0.00077 32.1 4.5 27 195-225 123-149 (494)
446 1w78_A FOLC bifunctional prote 43.5 28 0.00097 30.5 5.0 29 195-227 50-78 (422)
447 3bor_A Human initiation factor 43.4 8.3 0.00028 30.8 1.4 16 195-210 68-83 (237)
448 2db3_A ATP-dependent RNA helic 42.6 21 0.00073 31.3 4.1 27 195-221 94-120 (434)
449 3avx_A Elongation factor TS, e 42.6 15 0.00051 37.6 3.2 21 195-215 297-317 (1289)
450 3eiq_A Eukaryotic initiation f 42.4 8.7 0.0003 32.9 1.4 17 195-211 78-94 (414)
451 3fmo_B ATP-dependent RNA helic 41.6 15 0.00051 30.8 2.7 17 195-211 132-148 (300)
452 3fmp_B ATP-dependent RNA helic 41.3 21 0.00071 31.6 3.8 17 195-211 132-148 (479)
453 3i5x_A ATP-dependent RNA helic 41.3 27 0.00093 31.5 4.7 25 195-219 112-136 (563)
454 3oiy_A Reverse gyrase helicase 40.8 14 0.00048 31.9 2.5 16 195-210 37-52 (414)
455 3vkg_A Dynein heavy chain, cyt 40.0 10 0.00036 42.4 1.8 19 195-213 1305-1323(3245)
456 3vqt_A RF-3, peptide chain rel 38.2 21 0.00071 32.9 3.4 21 195-215 32-52 (548)
457 3do6_A Formate--tetrahydrofola 37.6 38 0.0013 31.1 4.8 31 194-226 43-77 (543)
458 1jbw_A Folylpolyglutamate synt 37.6 32 0.0011 30.2 4.4 29 195-227 40-68 (428)
459 1ny5_A Transcriptional regulat 37.0 20 0.00068 31.3 2.9 22 195-216 161-182 (387)
460 3o8b_A HCV NS3 protease/helica 36.8 19 0.00066 34.1 3.0 17 195-211 233-249 (666)
461 3c5h_A Glucocorticoid receptor 35.4 17 0.00059 29.4 2.1 16 200-215 34-49 (255)
462 3sqw_A ATP-dependent RNA helic 35.3 38 0.0013 30.8 4.7 25 195-219 61-85 (579)
463 2j0s_A ATP-dependent RNA helic 35.2 25 0.00085 30.0 3.2 17 195-211 75-91 (410)
464 3dzd_A Transcriptional regulat 35.1 23 0.00078 30.7 2.9 22 195-216 153-174 (368)
465 1xti_A Probable ATP-dependent 35.1 25 0.00087 29.6 3.2 17 195-211 46-62 (391)
466 4a2q_A RIG-I, retinoic acid in 34.7 28 0.00094 33.3 3.7 20 195-214 264-283 (797)
467 1e8c_A UDP-N-acetylmuramoylala 34.5 37 0.0013 30.6 4.4 29 195-227 109-137 (498)
468 2wtz_A UDP-N-acetylmuramoyl-L- 34.4 37 0.0013 31.0 4.4 29 195-227 147-175 (535)
469 3tvt_A Disks large 1 tumor sup 34.1 22 0.00076 30.0 2.6 17 195-214 101-117 (292)
470 1fuu_A Yeast initiation factor 33.7 10 0.00035 32.1 0.5 17 195-211 59-75 (394)
471 1o5z_A Folylpolyglutamate synt 33.1 37 0.0013 30.1 4.1 29 195-227 53-81 (442)
472 2whx_A Serine protease/ntpase/ 32.7 22 0.00074 33.3 2.5 17 195-211 187-203 (618)
473 1lj2_C EIF4GI, eukaryotic prot 32.4 9.5 0.00032 20.7 0.0 14 195-208 7-20 (28)
474 4a0g_A Adenosylmethionine-8-am 32.0 39 0.0013 32.8 4.3 27 195-223 35-62 (831)
475 1j6u_A UDP-N-acetylmuramate-al 31.8 47 0.0016 29.7 4.5 28 195-226 115-142 (469)
476 3fho_A ATP-dependent RNA helic 31.8 25 0.00085 31.6 2.7 16 195-210 159-174 (508)
477 3ug7_A Arsenical pump-driving 31.2 44 0.0015 28.6 4.1 25 194-218 26-50 (349)
478 2zpa_A Uncharacterized protein 31.0 33 0.0011 32.6 3.5 20 195-214 193-212 (671)
479 2ykg_A Probable ATP-dependent 30.5 39 0.0013 31.3 3.9 22 195-216 29-50 (696)
480 2x5o_A UDP-N-acetylmuramoylala 30.4 48 0.0017 29.2 4.4 28 195-226 105-132 (439)
481 2vos_A Folylpolyglutamate synt 29.9 49 0.0017 29.8 4.4 28 195-226 65-92 (487)
482 4a4z_A Antiviral helicase SKI2 29.4 36 0.0012 33.8 3.6 16 195-210 55-70 (997)
483 3p1w_A Rabgdi protein; GDI RAB 28.5 46 0.0016 30.1 3.9 28 13-40 358-387 (475)
484 2xgj_A ATP-dependent RNA helic 28.1 38 0.0013 33.6 3.5 17 195-211 102-118 (1010)
485 3l9o_A ATP-dependent RNA helic 27.2 32 0.0011 34.5 2.8 19 195-213 200-218 (1108)
486 2v1x_A ATP-dependent DNA helic 27.2 34 0.0011 31.7 2.8 19 195-213 60-78 (591)
487 2qp2_A Unknown protein; toxin, 26.7 17 0.00059 33.4 0.7 36 3-38 445-488 (511)
488 1gm5_A RECG; helicase, replica 23.8 50 0.0017 31.8 3.4 22 195-216 390-411 (780)
489 1rh7_A Relmbeta, resistin-like 23.0 58 0.002 22.0 2.5 34 3-38 12-47 (81)
490 4f92_B U5 small nuclear ribonu 22.8 62 0.0021 34.2 4.0 26 195-220 943-968 (1724)
491 1gku_B Reverse gyrase, TOP-RG; 22.0 37 0.0013 33.9 2.1 15 195-209 72-86 (1054)
492 1sh1_A Neurotoxin I; NMR {Stic 21.7 1E+02 0.0035 18.8 3.3 18 14-34 15-32 (48)
493 3czp_A Putative polyphosphate 20.9 63 0.0022 29.5 3.3 21 195-215 44-64 (500)
494 3f8t_A Predicted ATPase involv 20.4 26 0.00087 32.2 0.5 19 195-214 240-258 (506)
No 1
>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}
Probab=99.84 E-value=5.3e-22 Score=156.09 Aligned_cols=111 Identities=30% Similarity=0.621 Sum_probs=97.2
Q ss_pred CCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeec-cEEEEEeeccc--ccCCCcEEEEeEEecccCCCCc
Q psy13262 14 KPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKTES--LFQIDYIVENICIINEKETPPD 90 (229)
Q Consensus 14 ~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rk-gRyv~~vk~~~--~~~~~giV~di~~l~~~~~~P~ 90 (229)
+|||+|+||++.++||+||++|++|+|| .+|+||++ .+|.+| +||||..|... ....+.+|+|+.++++++.+|.
T Consensus 2 ~PIT~v~vv~~~~~~P~gy~~Is~T~dG-~dAdLw~~-~lF~~k~~rYLC~sr~~~~~~~~~~~VvtDl~vi~~Kd~lP~ 79 (152)
T 3tow_A 2 DPITGVGVVASRNRAPTGYDVVAQTADG-VDADLWKD-GLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPV 79 (152)
T ss_dssp CCCCEEEEESSTTCCCTTCEECCBCTTS-CBCCCSCC-CTTSCCCCCEEEEECCCCSTTGGGCEEEEEEEEEETTSCCCT
T ss_pred CCccEEEEEecCCCCCCCCeEEEecCCC-Cchhhccc-cccccCCeEEEEEecCCcccccCCCCeEEEEEEEeCCCCCCC
Confidence 7999999999999999999999999998 99999998 566556 99999998653 2345799999999999999999
Q ss_pred hhhHHHHhhhhhhhhhhhcceeeeecccccccchhh
Q psy13262 91 GFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFS 126 (229)
Q Consensus 91 ~y~~l~~~~~s~qt~l~e~~~~v~l~~l~~~~~~~~ 126 (229)
||+.+.++.++++++++++..++++.++.+...+..
T Consensus 80 Gf~~I~~T~dt~~~a~rKkrLCvK~~p~~s~~~AVt 115 (152)
T 3tow_A 80 GFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAIC 115 (152)
T ss_dssp TCEECCBCTTTCCBCCSSEEEEEEEEEGGGCSCEEE
T ss_pred CcEEeeccCCcchhhhceeEEEEEEccCCccceeEE
Confidence 999999999999999999999998877665544333
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.80 E-value=3.1e-20 Score=183.11 Aligned_cols=157 Identities=22% Similarity=0.256 Sum_probs=115.9
Q ss_pred eccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhh--hcce-------e-eeecccccccch
Q psy13262 56 RKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQIC--ERGG-------V-VDYKPQQSNNTI 124 (229)
Q Consensus 56 rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~--e~~~-------~-v~l~~l~~~~~~ 124 (229)
+++||+++++.++..++++.+++.+.++.. ...+.....+++.....+..+. +... + -.+..+....+.
T Consensus 532 ~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~ 611 (918)
T 3thx_B 532 SGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHH 611 (918)
T ss_dssp TTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred cCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999988999999999988876 3334345555443333221111 0100 0 011344567788
Q ss_pred hhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccC----CCceeeCCeeEecCccceeccCCCCCCCCcE
Q psy13262 125 FSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRKPTV 196 (229)
Q Consensus 125 ~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~----~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
++++|++.+++ ..++|+|++.+. ..+.+.++|||++. ....++|||+.+. +..| ++
T Consensus 612 la~lD~l~s~A~~a~~~~~~~P~~~~~----~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~-----~~~g-------~i 675 (918)
T 3thx_B 612 LATVDCIFSLAKVAKQGDYCRPTVQEE----RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLS-----EDSE-------RV 675 (918)
T ss_dssp HHHHHHHHHHHHHHTSSSCBCCEEESS----CEEEEEEECCHHHHHHTCSCSSSCCEEEEEC-----TTSC-------CE
T ss_pred HHHHHHHHHHHHHHhcCCCcCCcccCC----CcEEEEeccchhhhhhhccCCceeccccccc-----CCCC-------eE
Confidence 99999999875 578999999875 47889999999974 2246788876665 3344 89
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 197 LLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 197 ~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++||||||||||||||++|++++|+|+|++||
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp 707 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALITIMAQIGSYVP 707 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred EEEECCCCCchHHHHHHHHHHHHHhhcCcccc
Confidence 99999999999999999999999999999987
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.77 E-value=5.4e-19 Score=172.48 Aligned_cols=153 Identities=21% Similarity=0.306 Sum_probs=112.2
Q ss_pred cEEEEEeecccccCCC-cEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc--------ceee--eecccccccchh
Q psy13262 58 TRYLCVSKTESLFQID-YIVENICIINEK-ETPPDGFCLIARTLDSDQGQICER--------GGVV--DYKPQQSNNTIF 125 (229)
Q Consensus 58 gRyv~~vk~~~~~~~~-giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v--~l~~l~~~~~~~ 125 (229)
..|+++++..++.+++ +.+|+-+..+.. +..|+ ...+++.....+..+.+. ...+ ....+....+.+
T Consensus 471 ~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~l 549 (800)
T 1wb9_A 471 HGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASAL 549 (800)
T ss_dssp TEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred ceEEEEEeccccccCCcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999988877787 899986666655 55555 666665544322222111 1111 113445677889
Q ss_pred hhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcEEEE
Q psy13262 126 SQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLL 199 (229)
Q Consensus 126 ~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~l 199 (229)
+++|++.+++ .+++|+|++.+. +.+.+.++|||++.. ...+++||+.+++ .| ++++|
T Consensus 550 a~lD~l~s~A~~a~~~~~~~P~~~~~----~~i~i~~~rHP~le~~~~~~~vlndisl~~------~g-------~i~~I 612 (800)
T 1wb9_A 550 AELDVLVNLAERAYTLNYTCPTFIDK----PGIRITEGRHPVVEQVLNEPFIANPLNLSP------QR-------RMLII 612 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCBCCEECSS----SCEEEEEECCTTHHHHCSSCCCCEEEEECS------SS-------CEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccEECCC----CCEEEEeccccEEEccCCCceeeecccccC------CC-------cEEEE
Confidence 9999999875 689999999874 568999999999852 2457777776652 33 89999
Q ss_pred EeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 200 TGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 200 tGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
|||||||||||||+++++.+|+|+|++||
T Consensus 613 tGpNGsGKSTlLr~iagl~~~~q~G~~vp 641 (800)
T 1wb9_A 613 TGPNMGGKSTYMRQTALIALMAYIGSYVP 641 (800)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHTTTCCBS
T ss_pred ECCCCCChHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999886
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=1.9e-18 Score=172.34 Aligned_cols=168 Identities=27% Similarity=0.334 Sum_probs=103.3
Q ss_pred eeccEEEEEeecccccC-CCcEEEEeEEe-ccc-CCCCchhhHHHHhhhhhhhhh----hhc-ceee-----eecccccc
Q psy13262 55 LRKTRYLCVSKTESLFQ-IDYIVENICII-NEK-ETPPDGFCLIARTLDSDQGQI----CER-GGVV-----DYKPQQSN 121 (229)
Q Consensus 55 ~rkgRyv~~vk~~~~~~-~~giV~di~~l-~~~-~~~P~~y~~l~~~~~s~qt~l----~e~-~~~v-----~l~~l~~~ 121 (229)
.+++||++.++..+..+ +++.+...+.. +.. +..|+. ..+.......+..+ .+. ..+. .+..+...
T Consensus 634 ~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el-~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 712 (1022)
T 2o8b_B 634 IGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTI-EKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSA 712 (1022)
T ss_dssp CGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ecCceEEEEEehhhhcccCCCceEEeeeccCccEEechHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488999999988766 67765433433 322 444543 33222222211110 000 0000 11234456
Q ss_pred cchhhhhhHHHHHH------hCCCccceEecCCCCCceEEeccccCcccCC---CceeeCCeeEecCccceeccCCCCCC
Q psy13262 122 NTIFSQRNILKDMY------QQGVCVPTFLGLEEPHPYISALESLYPCATG---DQTYIPNSTVIGRCKEDVESGGEGNR 192 (229)
Q Consensus 122 ~~~~~~~d~l~~~~------~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~---~~~~vp~~~~l~~~~~~~~~~~~~~~ 192 (229)
.+.++++|++.+++ ..++|+|++.+.....+.+++.++|||++.. ...+++||+.++ +..+.....
T Consensus 713 ~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~-----~~~~~~~~~ 787 (1022)
T 2o8b_B 713 VECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIG-----CEEEEQENG 787 (1022)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEEECCCC------CCCCCCEEEEES-----CCCSCC---
T ss_pred HHHHHHHHHHHhHHHHHhhccCCccCCccccCCCCCceEEEEeccccEEEEEecCCceEeeeeeec-----cccccccCC
Confidence 78899999999875 3578999998532234679999999999862 234566666554 332000000
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
..++++||||||||||||||++|++.+|||+|++||
T Consensus 788 ~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vp 823 (1022)
T 2o8b_B 788 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVP 823 (1022)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEE
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEec
Confidence 128999999999999999999999999999999886
No 5
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.69 E-value=4e-17 Score=158.63 Aligned_cols=149 Identities=21% Similarity=0.282 Sum_probs=107.0
Q ss_pred cEEEEEeecccccCCCc-EEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc--------ceee--eecccccccchh
Q psy13262 58 TRYLCVSKTESLFQIDY-IVENICIINEK-ETPPDGFCLIARTLDSDQGQICER--------GGVV--DYKPQQSNNTIF 125 (229)
Q Consensus 58 gRyv~~vk~~~~~~~~g-iV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v--~l~~l~~~~~~~ 125 (229)
..|++.++..++.++++ .+|+-...+.. +..|+ ...+++.....+..+.+. ...+ ....+....+.+
T Consensus 446 ~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 524 (765)
T 1ewq_A 446 FGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARIL 524 (765)
T ss_dssp TEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred eeEEEEeehHhhhcCCcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888888888777887 77875555544 55555 566655443322222111 1110 112345677889
Q ss_pred hhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEe
Q psy13262 126 SQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTG 201 (229)
Q Consensus 126 ~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltG 201 (229)
+++|++.+++ ..++|+|++ + ..+.+.++|||++.....++++|+.+. | ++++|||
T Consensus 525 a~LD~l~s~a~~a~~~~~~~P~~-~-----~~i~i~~~rHP~le~~~~~vl~disl~--------g-------~i~~I~G 583 (765)
T 1ewq_A 525 AELDVYAALAEVAVRYGYVRPRF-G-----DRLQIRAGRHPVVERRTEFVPNDLEMA--------H-------ELVLITG 583 (765)
T ss_dssp HHHHHHHHHHHHHHHHTCBCCEE-S-----SSEEEEEECCTTGGGTSCCCCEEEEES--------S-------CEEEEES
T ss_pred HHHHHHHhhHHHHHhCCceeecc-C-----CcEEEEEeECceEccCCceEeeeccCC--------C-------cEEEEEC
Confidence 9999999875 478999999 2 458899999999862246788887776 3 8999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 202 PNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 202 pN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
|||||||||||+++++.+|+|+|.++|
T Consensus 584 pNGsGKSTlLr~iagl~~~~~~G~~vp 610 (765)
T 1ewq_A 584 PNMAGKSTFLRQTALIALLAQVGSFVP 610 (765)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTTTCCBS
T ss_pred CCCCChHHHHHHHHhhhhhcccCceee
Confidence 999999999999999999999999875
No 6
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.68 E-value=3.5e-17 Score=161.81 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=102.5
Q ss_pred cEEEEEeecccc---cCCCcEEEEeEEecccCCCCchhhHHHHhhhhhhhhhhhc--------ceee-e-ecccccccch
Q psy13262 58 TRYLCVSKTESL---FQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICER--------GGVV-D-YKPQQSNNTI 124 (229)
Q Consensus 58 gRyv~~vk~~~~---~~~~giV~di~~l~~~~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v-~-l~~l~~~~~~ 124 (229)
|.|+.+.+...+ ....++.++....+.++ .+.....+++.....+..+.+. ...+ . ...+....+.
T Consensus 520 Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf-~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ 598 (934)
T 3thx_A 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKF-TNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDV 598 (934)
T ss_dssp CEEEEECHHHHTTTTTCSSCEEEEEC--CEEE-ECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred eEEEEEEechhhccCCCCCcEEEEcccCeEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666543221 12346766644444333 4555555555444332222111 1000 0 1234567888
Q ss_pred hhhhhHHHHHH----h--CCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcE
Q psy13262 125 FSQRNILKDMY----Q--QGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTV 196 (229)
Q Consensus 125 ~~~~d~l~~~~----~--~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
++++|++.+++ . +++|+|++.+.+ ...+.+.++|||++.. ...++|||+.+. +..| ++
T Consensus 599 la~lD~l~s~A~~a~~~~~~~~rP~~~~~~--~~~i~i~~~rHP~le~~~~~~~v~ndisl~-----~~~g-------~i 664 (934)
T 3thx_A 599 LAQLDAVVSFAHVSNGAPVPYVRPAILEKG--QGRIILKASRHACVEVQDEIAFIPNDVYFE-----KDKQ-------MF 664 (934)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCBCCEEECTT--SCEEEEEEECCTTTTTC--CCCCCEEEEEE-----TTTB-------CE
T ss_pred HHHHHHHHHHHHHHHhccCCCcCCeeccCC--CcceEeecCccchhhhcCCceeecccceee-----cCCC-------eE
Confidence 99999998865 2 689999998742 2568999999999963 245777776654 3344 89
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 197 LLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 197 ~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++||||||||||||||++|++++|+|+|++||
T Consensus 665 ~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp 696 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP 696 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999987
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.83 E-value=2.5e-09 Score=89.28 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=40.5
Q ss_pred eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 4 ~l~~~~l--------~~~y~~~~~l~~vsl~i~~G-------e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 4 ILRAENI--------KKVIRGYEILKGISLSVKKG-------EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEEECTTSCHHHHHHHHT
T ss_pred EEEEEeE--------EEEECCEeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4566655 34456677899999999999 999999999999999999984
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.80 E-value=3.8e-09 Score=89.95 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=41.6
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++++++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 6 ~~l~i~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 6 EILRTENI--------VKYFGEFKALDGVSISVNKG-------DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEEEEE--------EEEETTEEEEEEECCEEETT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred cEEEEeee--------EEEECCEeeEeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45677665 34457778999999999999 999999999999999999983
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.79 E-value=4.3e-09 Score=90.18 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=42.4
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~~l~~~~l--------~~~~~~~~vL~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 10 ALLEASHL--------HYHVQQQALINDVSLHIASG-------EMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp CEEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECCTTSCHHHHHHHHT
T ss_pred ceEEEEeE--------EEEeCCeeEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 56777765 34467788999999999999 999999999999999999984
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.79 E-value=4e-09 Score=88.93 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 5 ~~l~~~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 5 IVLEVQSL--------HVYYGAIHAIKGIDLKVPRG-------QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred ceEEEEeE--------EEEECCeeEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 45666665 33456677899999999999 999999999999999999984
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.78 E-value=4.5e-09 Score=89.84 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=41.1
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 5 ~~l~i~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 5 NKLHVIDL--------HKRYGGHEVLKGVSLQARAG-------DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CCEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred ceEEEeeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 35666665 33457777999999999999 999999999999999999984
No 12
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.76 E-value=5.3e-09 Score=90.27 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=42.0
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 20 ~~l~~~~l--------~~~y~~~~vL~~isl~i~~G-------e~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 20 MLIQLDQI--------GRMKQGKTILKKISWQIAKG-------DKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred ceEEEEeE--------EEEECCEEEEEeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 56777766 34457778999999999999 999999999999999999983
No 13
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.76 E-value=6.2e-09 Score=89.20 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=41.5
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++++++ ...+++...+++++|++++| ++++|+||||+|||||||+++.
T Consensus 19 ~~l~~~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 19 HMLSIKDL--------HVSVEDKAILRGLSLDVHPG-------EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp -CEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 45677665 33456778999999999999 9999999999999999999853
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.76 E-value=5.5e-09 Score=89.09 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=41.4
Q ss_pred ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++++++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 14 ~~l~i~~l--------~~~y~~~~vl~~vsl~i~~G-------ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 14 GAVVVKDL--------RKRIGKKEILKGISFEIEEG-------EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CCEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred CeEEEEEE--------EEEECCEEEEEeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence 46666665 33456778999999999999 999999999999999999983
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.75 E-value=5e-09 Score=90.30 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=40.7
Q ss_pred ceEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++++++ ...+++ ...+++++|++++| ++++|+||||||||||||+++
T Consensus 6 ~~l~i~~l--------s~~y~~~~~~L~~isl~i~~G-------e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 6 YILKVEEL--------NYNYSDGTHALKGINMNIKRG-------EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEEEEE--------EEECTTSCEEEEEEEEEEETT-------SEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEEEE--------EEEECCCCeEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 46777765 334554 45899999999999 999999999999999999983
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.74 E-value=6.4e-09 Score=89.05 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=41.0
Q ss_pred eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++++ ...+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 24 ~l~i~~l--------~~~y~~~~vL~~vsl~i~~G-------ei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 24 MIDVHQL--------KKSFGSLEVLKGINVHIREG-------EVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp SEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEEcCCCCcHHHHHHHHH
Confidence 5677665 34457778999999999999 999999999999999999983
No 17
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.73 E-value=9.1e-09 Score=87.24 Aligned_cols=41 Identities=34% Similarity=0.374 Sum_probs=36.5
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++-
T Consensus 11 ~~y~~~~vl~~vsl~i~~G-------e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 11 ASIDGETILKGVNLVVPKG-------EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHHT
T ss_pred EEECCEEEEeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence 3456678999999999999 9999999999999999999954
No 18
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.70 E-value=8e-09 Score=85.84 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=39.4
Q ss_pred eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++++ ...+++ ..+++++|++++| ++++|+||||+|||||||+++
T Consensus 10 ~l~~~~l--------s~~y~~-~il~~vsl~i~~G-------e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 10 KLEIRDL--------SVGYDK-PVLERITMTIEKG-------NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEEEE--------EEESSS-EEEEEEEEEEETT-------CCEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEEE--------EEEeCC-eEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4566655 334566 8999999999999 999999999999999999983
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.69 E-value=1.4e-08 Score=90.76 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=41.6
Q ss_pred eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++++++ ...+++...+++++|++++| ++++|+||||||||||||+++.
T Consensus 4 ~l~i~~l--------s~~y~~~~~L~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 4 ALHIGHL--------SKSFQNTPVLNDISLSLDPG-------EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEECCCCchHHHHHHHHhc
Confidence 4566655 44567788999999999999 9999999999999999999953
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.68 E-value=9.6e-09 Score=86.36 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=32.6
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||||||||||+++
T Consensus 18 ~~~L~~isl~i~~G-------e~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 18 IYALKNVNLNIKEG-------EFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred eeeEEeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 35899999999999 999999999999999999984
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.68 E-value=1.2e-08 Score=86.82 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=35.6
Q ss_pred eeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++ +...+++++|++++| ++++|+||||+|||||||+++
T Consensus 12 ~~y~~~~~vl~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 12 FYYQAENFLFQQLNFDLNKG-------DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEETTTTEEEEEEEEEEETT-------CEEEEECCSSSSHHHHHHHHT
T ss_pred EEeCCCCeEEEEEEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 3345 667899999999999 999999999999999999983
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.67 E-value=1.4e-08 Score=85.96 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=33.4
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+...+++++|++++| ++++|+||||+|||||||+++
T Consensus 21 ~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 21 SPVILDNINLSIKQG-------EVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp SCEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred CcceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999 999999999999999999983
No 23
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.64 E-value=1.3e-08 Score=85.79 Aligned_cols=36 Identities=22% Similarity=0.498 Sum_probs=33.2
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+...+++++|++++| ++++|+||||+|||||||+++
T Consensus 14 ~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 14 SEQILRDISFEAQPN-------SIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp SSCSEEEEEEEECTT-------EEEEEECCTTSSHHHHHHHHT
T ss_pred CCceEEEeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999 999999999999999999984
No 24
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.63 E-value=1.4e-08 Score=85.37 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=33.1
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+...+++++|++++| ++++|+||||+|||||||+++
T Consensus 17 ~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 17 DPPTLNGITFSIPEG-------ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp SCCSEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred CCceeeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 356899999999999 999999999999999999983
No 25
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.63 E-value=2.5e-08 Score=89.68 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=37.5
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++....+++++|++++| ++++|+||||||||||||+++-
T Consensus 10 ~~~yg~~~~L~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 10 TKAWGEVVVSKDINLDIHEG-------EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCEEEEeeeEEEECCC-------CEEEEEcCCCchHHHHHHHHHc
Confidence 44567788999999999999 9999999999999999999953
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.63 E-value=1.6e-08 Score=86.89 Aligned_cols=48 Identities=31% Similarity=0.344 Sum_probs=39.5
Q ss_pred eEEeccccCcccCCCceeeCC---eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYIPN---STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~vp~---~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++.++ ...+++ ...+++++|++++| ++++|+||||+|||||||+++
T Consensus 16 ~l~~~~l--------~~~y~~~~~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 16 LVKFQDV--------SFAYPNHPNVQVLQGLTFTLYPG-------KVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CEEEEEE--------EECCTTCTTSCCEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEEE--------EEEeCCCCCceeeEeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 5677665 233444 56899999999999 999999999999999999983
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.63 E-value=2.3e-08 Score=85.56 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||+|||||||+++
T Consensus 20 ~~vl~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 20 KKALENVSLVINEG-------ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred cceeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 46899999999999 999999999999999999983
No 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.61 E-value=1.9e-08 Score=84.17 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=33.1
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+...+++++|++++| ++++|+||||+|||||||+++
T Consensus 20 ~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 20 GTPVLKDINFKIERG-------QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp SCCSEEEEEEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred CceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 356899999999999 999999999999999999983
No 29
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.59 E-value=3.6e-08 Score=88.03 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|.||||||||||||+++-
T Consensus 11 ~~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 11 KYFGKVKAVDGVSFEVKDG-------EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEETTEEEEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHHT
T ss_pred EEECCEEEEeeeEEEEcCC-------CEEEEEcCCCchHHHHHHHHHC
Confidence 3456677899999999999 9999999999999999999953
No 30
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.59 E-value=2.5e-08 Score=88.87 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=40.5
Q ss_pred ceEEeccccCcccCCCceee-CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 152 PYISALESLYPCATGDQTYI-PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 152 ~~i~~~~~~hpll~~~~~~v-p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+++.++ ...+ ++...+++++|++++| ++++|+||||||||||||+++
T Consensus 13 ~~l~~~~l--------~~~y~g~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 13 MTIEFVGV--------EKIYPGGARSVRGVSFQIREG-------EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEEEEE--------EECCTTSTTCEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEE--------EEEEcCCCEEEeeeEEEECCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 46666665 3344 5556899999999999 999999999999999999984
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.58 E-value=4.3e-08 Score=87.92 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=36.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++...+++++|++++| ++++|.||||||||||||+++-
T Consensus 11 ~~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDG-------EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHHT
T ss_pred EEECCEEEEeeeEEEEcCC-------CEEEEECCCCcHHHHHHHHHHc
Confidence 3456677899999999999 9999999999999999999953
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.57 E-value=4.5e-08 Score=87.79 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=36.4
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++...+++++|+++.| ++++|+||||||||||||+++
T Consensus 18 ~~~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 18 TKRFGNFTAVNKLNLTIKDG-------EFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEECCEEEEeeeEEEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence 33456677899999999999 999999999999999999985
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.56 E-value=4.4e-08 Score=87.56 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=35.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++...+++++|++++| ++++|.||||||||||||+++-
T Consensus 12 ~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 12 KFGNFTALNNINLKIKDG-------EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp ESSSSEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred EECCEEEEEeeEEEECCC-------CEEEEECCCCchHHHHHHHHhc
Confidence 346667899999999999 9999999999999999999953
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.56 E-value=3.2e-08 Score=84.67 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=31.9
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|+++ | ++++|+||||+|||||||+++
T Consensus 18 ~~il~~vsl~i~-G-------e~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 18 RFSLENINLEVN-G-------EKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEEEEEEEEC-S-------SEEEEECCTTSSHHHHHHHHT
T ss_pred ceeEEeeeEEEC-C-------EEEEEECCCCCCHHHHHHHHh
Confidence 568999999999 9 999999999999999999984
No 35
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.55 E-value=5e-08 Score=87.24 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=40.9
Q ss_pred CceEEeccccCcccCCCceeeCC----eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 151 HPYISALESLYPCATGDQTYIPN----STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 151 ~~~i~~~~~~hpll~~~~~~vp~----~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.++++++ ...++. ...+++++|++++| ++++|+||||||||||||+++.
T Consensus 22 ~~mi~v~~l--------s~~y~~~~~~~~aL~~vsl~i~~G-------ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 22 KHMIKLSNI--------TKVFHQGTRTIQALNNVSLHVPAG-------QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp -CCEEEEEE--------EEEEECSSSEEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEeE--------EEEeCCCCCCeEEEEeeEEEEcCC-------CEEEEEcCCCchHHHHHHHHhc
Confidence 357788776 333332 35899999999999 9999999999999999999853
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.54 E-value=3.5e-08 Score=84.19 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=32.0
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++++| ++++|+||||+|||||||+++
T Consensus 34 ~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 34 RTLKSINFFIPSG-------TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CSEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred ceeEeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999 999999999999999999984
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.53 E-value=3.9e-08 Score=87.44 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=34.7
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++. .+++++|++++| ++++|+||||||||||||+++-
T Consensus 10 ~y~~~-~l~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 10 KWKNF-SLDNLSLKVESG-------EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp ECSSC-EEEEEEEEECTT-------CEEEEECCCTHHHHHHHHHHHT
T ss_pred EECCE-EEeeeEEEEcCC-------CEEEEECCCCccHHHHHHHHHc
Confidence 34555 899999999999 9999999999999999999953
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.50 E-value=9.2e-08 Score=83.58 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=39.6
Q ss_pred eEEeccccCcccCCCceee-CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYI-PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~v-p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++++ ...+ +....|++++|++++| ++++|+||||+|||||||+++
T Consensus 53 ~i~~~~v--------s~~y~~~~~vL~~isl~i~~G-------e~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 53 RIEFENV--------HFSYADGRETLQDVSFTVMPG-------QTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp CEEEEEE--------EEESSTTCEEEEEEEEEECTT-------CEEEEESSSCHHHHHHHHHHT
T ss_pred eEEEEEE--------EEEcCCCCceeeeeeEEEcCC-------CEEEEECCCCchHHHHHHHHH
Confidence 4677665 2234 3567899999999999 999999999999999999883
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.48 E-value=7.5e-08 Score=86.84 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=40.5
Q ss_pred eEEeccccCcccCCCceee--CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 153 YISALESLYPCATGDQTYI--PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 153 ~i~~~~~~hpll~~~~~~v--p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.++++++ ...+ .+...+++++|++++| ++++|+||||||||||||+++-
T Consensus 19 ~i~~~~l--------~~~y~~~~~~~L~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 19 QMTVKDL--------TAKYTEGGNAILENISFSISPG-------QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEE--------EEESSSSSCCSEEEEEEEECTT-------CEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEEE--------EEEecCCCeEEeeceeEEEcCC-------CEEEEECCCCChHHHHHHHHhC
Confidence 4677665 3344 3457899999999999 9999999999999999999853
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.48 E-value=3.6e-08 Score=87.79 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=35.1
Q ss_pred eeCCee--EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 170 YIPNST--VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 170 ~vp~~~--~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++.. .+++++|++++| ++++|+||||||||||||+++-
T Consensus 12 ~y~~~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 12 VFKKGKVVALDNVNINIENG-------ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEGGGTEEEEEEEEEEECTT-------CEEEEECSCHHHHHHHHHHHHT
T ss_pred EECCEeeeeEeceEEEECCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 345555 899999999999 9999999999999999999853
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.44 E-value=7.3e-08 Score=81.76 Aligned_cols=34 Identities=38% Similarity=0.671 Sum_probs=31.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++++| ++++|+||||+|||||||+++
T Consensus 14 ~vl~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 14 TRLGPLSGEVRAG-------EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp TTEEEEEEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 4788999999999 999999999999999999983
No 42
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.38 E-value=1.5e-07 Score=78.95 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=23.2
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
++...+++++|++.++ .+++|+||||+||||++|.++-
T Consensus 10 ~~~~~l~~isl~i~~g-------~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRP-------FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -------------CCS-------EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceeecceeccCCCC-------EEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999 9999999999999999999843
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.36 E-value=1.4e-07 Score=81.80 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=32.4
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|++++| ++++|+||||+|||||||+++
T Consensus 51 ~~vl~~isl~i~~G-------e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 51 TPVLKDINFKIERG-------QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CCSEEEEEEEECTT-------CEEEEEESTTSSHHHHHHHHT
T ss_pred ceEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 46799999999999 999999999999999999983
No 44
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.34 E-value=2.2e-07 Score=73.45 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=33.6
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+....+.+++|++++| ++++|.||||+|||||+|.++-+
T Consensus 18 g~~~~l~~vsl~i~~G-------e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 18 GKKFAEILLKLHTEKA-------IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHHHHHHHCCSSC-------EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCC-------CEEEEECCCCCCHHHHHHHHHHh
Confidence 4455678889999999 99999999999999999999544
No 45
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.25 E-value=1.5e-06 Score=86.34 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.7
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++...+++++|++++| ++++|+||||+|||||||+++
T Consensus 443 ~~yg~~~iL~~vsl~I~~G-------e~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 443 LAYGAKILLNKTQLRLKRA-------RRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHH
T ss_pred EEECCEEeEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4457778999999999999 999999999999999999996
No 46
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.22 E-value=4.2e-07 Score=75.21 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=21.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++|++.+| ++++|+||||+||||++|.++
T Consensus 15 ~~~~~~sl~v~~G-------~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 15 QTQGPGSMLKSVG-------VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp -------CCEECC-------CEEEEECSCC----CHHHHHH
T ss_pred cccCCCCcccCCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 4567888999999 999999999999999999986
No 47
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.20 E-value=9.5e-07 Score=83.26 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=32.8
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| +.++|+||||+||||++|.++
T Consensus 356 ~~~l~~i~l~i~~G-------~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 356 KPALSHVSFSIPQG-------KTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred ccccccceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 56899999999999 999999999999999999984
No 48
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.15 E-value=1e-06 Score=83.08 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++++++++| ++++|+||||+|||||+|+++
T Consensus 356 ~~~l~~v~~~i~~G-------~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 356 VPALRNINLKIPAG-------KTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp CCSEEEEEEEECTT-------CEEEEEECTTSSHHHHHHHHT
T ss_pred CccccceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 56899999999999 999999999999999999983
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.14 E-value=1.1e-06 Score=82.96 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=32.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++++++++++| ++++|+||||+|||||+|+++
T Consensus 358 ~vl~~isl~i~~G-------~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 358 PIFQDFSLSIPSG-------SVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp EEEEEEEEEECTT-------CEEEEECCTTSSSTHHHHHHT
T ss_pred ccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 6899999999999 999999999999999999983
No 50
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.14 E-value=6.7e-07 Score=78.07 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=32.7
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...|+++++++++| ++++|+||||+|||||+|++.-
T Consensus 113 ~~vL~~vsl~i~~G-------e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 113 INALKLWLKGIPKK-------NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHHHHHHTCTTC-------SEEEEECSSSSSHHHHHHHHHH
T ss_pred hhhhccceEEecCC-------CEEEEECCCCCcHHHHHHHHhh
Confidence 45788999999999 9999999999999999999843
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.13 E-value=2.5e-06 Score=79.88 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.4
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+..++|++.+| ++++|+||||+|||||||+++
T Consensus 300 ~~l~~~~~~i~~G-------e~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 300 FRLEVEPGEIKKG-------EVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEEEECCEEEETT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCccccCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 5677778888999 999999999999999999984
No 52
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.12 E-value=8.9e-07 Score=83.78 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.7
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+...++++++++++| ++++|+||||+||||++|++
T Consensus 367 ~~~~l~~isl~i~~G-------~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 367 KKPVLKDITFHIKPG-------QKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp SSCSCCSEEEECCTT-------CEEEEECCTTSSTTHHHHHH
T ss_pred CCccccceEEEEcCC-------CEEEEECCCCCcHHHHHHHH
Confidence 456899999999999 99999999999999999988
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.10 E-value=2.6e-06 Score=80.81 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.0
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+..++|++.+| ++++|+||||+|||||||+++
T Consensus 370 ~~l~~~~~~v~~G-------ei~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 370 FKLEVEPGEIRKG-------EVIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp CEEEECCEEEETT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEecccccCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4567777778899 999999999999999999984
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.09 E-value=8.1e-07 Score=88.26 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=32.4
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++++|+++.| ++++|+||||+|||||||+++
T Consensus 686 ~~iL~dVSl~I~~G-------eivaIiGpNGSGKSTLLklLa 720 (986)
T 2iw3_A 686 KPQITDINFQCSLS-------SRIAVIGPNGAGKSTLINVLT 720 (986)
T ss_dssp SCSEEEEEEEEETT-------CEEEECSCCCHHHHHHHHHHT
T ss_pred ceeeeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999 999999999999999999983
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.04 E-value=2.9e-06 Score=79.44 Aligned_cols=37 Identities=35% Similarity=0.410 Sum_probs=32.0
Q ss_pred eCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++.. ..+.+++ .+.+| ++++|+||||+|||||||+++
T Consensus 31 yg~~~~~l~~vs-~i~~G-------e~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 31 YGVNAFVLYRLP-VVKEG-------MVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp CSTTCCEEECCC-CCCTT-------SEEEEECCTTSSHHHHHHHHH
T ss_pred ECCccccccCcC-cCCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 4444 4788888 88899 999999999999999999984
No 56
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.02 E-value=1.5e-06 Score=81.76 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=31.9
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
...++++++++++| +.++|+||||+||||++|++
T Consensus 354 ~~~l~~isl~i~~G-------~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 354 APILKDINLSIEKG-------ETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp CCSEEEEEEEECTT-------CEEEEECSTTSSHHHHHTTT
T ss_pred CcceeeeEEEECCC-------CEEEEECCCCChHHHHHHHH
Confidence 46899999999999 99999999999999999987
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.02 E-value=3.4e-06 Score=80.04 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=32.0
Q ss_pred eCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++.. ..+.+++ .+++| ++++|+||||+|||||||+++
T Consensus 101 yg~~~~~l~~vs-~i~~G-------e~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 101 YGVNAFVLYRLP-IVKDG-------MVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp CSTTCCEEECCC-CCCTT-------SEEEEECCTTSSHHHHHHHHT
T ss_pred ECCCCeeeCCCC-CCCCC-------CEEEEECCCCChHHHHHHHHh
Confidence 3444 4788898 88898 999999999999999999983
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.01 E-value=4.8e-06 Score=77.92 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.6
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.+...++++++| ++++|+||||+|||||||+++
T Consensus 282 ~~l~~~~~~i~~G-------ei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 282 FQLVVDNGEAKEG-------EIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEEECCEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEeccceECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 5566667788899 999999999999999999983
No 59
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.98 E-value=2.5e-06 Score=80.58 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=32.1
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
...+++++|++++| +.++|+||||+||||++|++
T Consensus 356 ~~~l~~isl~i~~G-------e~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 356 DPVLSGVNFSVKPG-------SLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp CCSEEEEEEEECTT-------CEEEEECSSSSSHHHHHHTT
T ss_pred CcceeceEEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999 99999999999999999987
No 60
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.96 E-value=5.5e-06 Score=68.39 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
++++|+||||+|||||+|+++...+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999974433
No 61
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.93 E-value=6.2e-06 Score=65.26 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...+|+||||+||||+|+.|.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 49999999999999999999665
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.88 E-value=7.2e-06 Score=77.84 Aligned_cols=39 Identities=38% Similarity=0.428 Sum_probs=30.8
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.|-++.+.+..++ .+.+| ++++|+||||+|||||||+++
T Consensus 86 ~Y~~~~~~l~~l~-~~~~G-------ei~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 86 RYSANSFKLHRLP-TPRPG-------QVLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp ECSTTSCEEECCC-CCCTT-------SEEEEECCTTSSHHHHHHHHH
T ss_pred EECCCceeecCCC-CCCCC-------CEEEEECCCCChHHHHHHHHh
Confidence 3445556666655 46677 999999999999999999984
No 63
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=7e-06 Score=66.29 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=21.8
Q ss_pred CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++..+.+++|.+.++ +.++|+||+|+||||+.|.++
T Consensus 10 ~~~~~~~~~~~~~~~~-------~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAM-------VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp --------------CC-------CEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCCCceeEecCCC-------CEEEEEcCCCCCHHHHHHHHH
Confidence 5677888999999888 899999999999999999986
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.87 E-value=6.8e-06 Score=76.93 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=31.7
Q ss_pred ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..|-+|.+.+.++.. +++| ++++|+||||+|||||||+++
T Consensus 7 ~~~~~~~f~l~~l~~-~~~G-------ei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 7 HRYKVNGFKLFGLPT-PKNN-------TILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EESSTTSCEEECCCC-CCTT-------EEEEEECCTTSSHHHHHHHHT
T ss_pred eecCCCceeecCCCC-CCCC-------CEEEEECCCCCcHHHHHHHHh
Confidence 357788888876542 3445 899999999999999999983
No 65
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.87 E-value=5e-06 Score=70.77 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=26.4
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.+++ +.+| +.++|+||||+||||+|+.+.-
T Consensus 16 vl~~i~--i~~g-------~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 16 KVLELC--HRKM-------GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp HHHHGG--GCSS-------EEEEEECSTTCSHHHHHHHHHH
T ss_pred HHHHHh--hCCC-------CEEEEECCCCccHHHHHHHHHH
Confidence 455665 5666 8999999999999999999843
No 66
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=4.4e-06 Score=76.07 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=31.2
Q ss_pred eCCeeEecCccceeccCCCCCCCCcE--EEEEeCCCCChHHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTV--LLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~--~~ltGpN~~GKStlLk~i~l 216 (229)
+++.. +.++++++++| .. ++|+||||+||||||++++.
T Consensus 25 y~~~~-L~~vsl~i~~G-------ei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQG-------FCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp CC--C-HHHHHHSCC-C-------CEEEEEEECSTTSSSHHHHHHHHT
T ss_pred ECCee-cCCCceEecCC-------CeeEEEEECCCCCCHHHHHHHHhC
Confidence 34445 89999999999 88 99999999999999999843
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.86 E-value=5.5e-06 Score=79.23 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=28.3
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlL 211 (229)
..|++++|++++| ++++|+||||+||||||
T Consensus 32 ~~L~~vsl~i~~G-------e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEIPRG-------KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEEETT-------SEEEEECSTTSSHHHHH
T ss_pred cceeccEEEECCC-------CEEEEECCCCCCHHHHh
Confidence 4689999999999 99999999999999997
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.85 E-value=1e-05 Score=70.33 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=27.4
Q ss_pred cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.++++++.+| ++++|+||||+||||+++.++..
T Consensus 91 ~~l~~~~~~g-------~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 91 TELQLGFRKP-------AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CSCCCCSSSC-------EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccccCCC-------cEEEEEcCCCCCHHHHHHHHHHH
Confidence 3566667677 99999999999999999998543
No 69
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.85 E-value=4.3e-06 Score=74.13 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=31.6
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
....++++ +.+.+| ++++|.||||+|||||||+++-
T Consensus 58 g~~ald~l-l~i~~G-------q~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 58 GVRAIDGL-LTCGIG-------QRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp SCHHHHHH-SCEETT-------CEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEee-eeecCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 34578888 999999 9999999999999999999843
No 70
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.84 E-value=1.1e-05 Score=65.81 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++|+||||+|||||+++++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999999653
No 71
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.84 E-value=4.7e-06 Score=79.75 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=30.4
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++++|++++| ++++|+|||||||||||+.+.
T Consensus 337 ~L~~vsl~I~~G-------e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLG-------TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETT-------SEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCC-------CEEEEEeeCCCCHHHHHHHHH
Confidence 488999999999 999999999999999998763
No 72
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.83 E-value=7.6e-06 Score=76.10 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=35.0
Q ss_pred eeeCCeeEecCccc-eeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKE-DVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 169 ~~vp~~~~l~~~~~-~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
.+......|+++++ .+.+| ++++|+||||+|||||++++.+.-
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~G-------e~~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIG-------RSTLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EECCCCTTHHHHTTSSEETT-------SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cccCCchhHHHhcCCCCCCC-------eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34334457889999 99999 999999999999999999964433
No 73
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.79 E-value=6.8e-06 Score=75.53 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=29.0
Q ss_pred CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHHH
Q psy13262 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLIT 218 (229)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~~ 218 (229)
++++++++| ++++|+||||+|||||||++ |++.
T Consensus 130 ~vsl~i~~G-------e~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 130 KIRMSNFEG-------PRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp HHHHHSSSC-------CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred cCceEeCCC-------CEEEEECCCCCCHHHHHHHHhCccc
Confidence 588888888 99999999999999999998 5443
No 74
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.74 E-value=5.1e-06 Score=74.34 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=28.4
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
.+.+++|++.+| +++|+||||+||||+|+.|.++.
T Consensus 50 ~l~~v~l~~~~G--------~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 50 TITQLELELGGG--------FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp TEEEEEEECCSS--------EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC--------cEEEECCCCCCHHHHHHHHHHHh
Confidence 456677776555 99999999999999999986653
No 75
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.74 E-value=1.2e-05 Score=68.87 Aligned_cols=44 Identities=27% Similarity=0.200 Sum_probs=34.5
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.|+++++.+.+| ++++|+||||+|||||+++++..... +.|-+|
T Consensus 24 ~Ld~i~~~l~~G-------~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v 67 (296)
T 1cr0_A 24 GINDKTLGARGG-------EVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKV 67 (296)
T ss_dssp THHHHHCSBCTT-------CEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCE
T ss_pred HHHHHhcCCCCC-------eEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeE
Confidence 466777788888 99999999999999999998765432 336444
No 76
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.72 E-value=4e-06 Score=73.73 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=29.7
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+.++++.+++| +.++|+||||+|||||||.++
T Consensus 160 ~l~~l~~~i~~g-------~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 160 AISAIKDGIAIG-------KNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHHHHHHHHT-------CCEEEEESTTSCHHHHHHHGG
T ss_pred HHhhhhhhccCC-------CEEEEECCCCCCHHHHHHHHh
Confidence 567788899888 899999999999999999883
No 77
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.71 E-value=2e-05 Score=74.74 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=30.2
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|++..|.- .+.++++|+||||+|||||||+++
T Consensus 361 ~~l~~vsl~v~~G~~--~~GEiv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 361 KTQGDFVLNVEEGEF--SDSEILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EECSSCEEEECCEEC--CTTCEEEEESCTTSSHHHHHHHHH
T ss_pred cccCceEEEEecCcc--ccceEEEEECCCCCcHHHHHHHHh
Confidence 467788888876610 012689999999999999999984
No 78
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.71 E-value=2.2e-05 Score=72.65 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=27.9
Q ss_pred cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++|++..| .+++|+||||+||||+++.++.+
T Consensus 284 ~~Isl~i~~G-------eVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 284 EPLNVEGKAP-------FVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCCCCCSCTT-------EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeeccCC-------eEEEEECCCcccHHHHHHHHHHH
Confidence 4677777777 99999999999999999998543
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.71 E-value=2.3e-05 Score=69.75 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=26.9
Q ss_pred CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+++++++++ ++++|+||||+||||+++.++..
T Consensus 149 ~l~l~~~~g-------~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKP-------AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SCCCCSSSS-------EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceecCCC-------eEEEEEcCCCChHHHHHHHHHhh
Confidence 466666677 99999999999999999998543
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.70 E-value=8.7e-06 Score=74.34 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=31.3
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++++ +.+.+| ++++|.||||+||||||++++-
T Consensus 145 ~~vld~v-l~i~~G-------q~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 145 VRAINAL-LTVGRG-------QRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp CHHHHHH-SCCBTT-------CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEeee-EEecCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence 4578889 999999 9999999999999999999854
No 81
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.70 E-value=9.9e-06 Score=72.00 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=28.6
Q ss_pred cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++.+++| +.++|+||||+||||+||.+.
T Consensus 166 ~~l~~~i~~G-------~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 166 SFLRRAVQLE-------RVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp HHHHHHHHTT-------CCEEEEESSSSCHHHHHHHHH
T ss_pred HHHHHHHhcC-------CEEEEECCCCCCHHHHHHHHH
Confidence 7788999999 899999999999999999884
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.69 E-value=1.9e-05 Score=62.51 Aligned_cols=32 Identities=13% Similarity=-0.045 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
+.++|+||||+||||+++.++-... ...|..+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~ 70 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRG 70 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeE
Confidence 8999999999999999998854332 2345443
No 83
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.67 E-value=2e-05 Score=69.75 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=27.8
Q ss_pred ecCccceecc--CCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 177 IGRCKEDVES--GGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 177 l~~~~~~~~~--~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+++.+.+ + +.++|+||||+|||||+|.++-
T Consensus 158 ~~~v~~~v~~~lg-------~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 158 WKFIPKEARPFFA-------KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp GGGSCTTTGGGTC-------EEEEEECCTTSHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhh-------CeEEEECCCCCCHHHHHHHHHH
Confidence 3457777777 7 8999999999999999999843
No 84
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.67 E-value=2.5e-05 Score=79.88 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=31.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..+++++|++++| ++++|+||||+||||++|++
T Consensus 1047 ~~l~~vsl~i~~G-------e~v~ivG~sGsGKSTl~~~l 1079 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKG-------QTLALVGSSGCGKSTVVQLL 1079 (1284)
T ss_dssp CSBSSCCEEECSS-------SEEEEECSSSTTHHHHHHHH
T ss_pred eeecceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 5899999999999 99999999999999999988
No 85
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.66 E-value=2.4e-05 Score=72.30 Aligned_cols=34 Identities=29% Similarity=0.180 Sum_probs=26.9
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+.+++|++++ ++++|+||||+|||||||+++.+
T Consensus 19 ~l~~vsl~i~~--------e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 19 GFFARTFDFDE--------LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp TEEEEEEECCS--------SEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccceEEEEcc--------ceEEEECCCCCcHHHHHHHHhcC
Confidence 45666666633 59999999999999999999543
No 86
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.66 E-value=1.8e-05 Score=80.91 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=31.7
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..|++++|++++| +.++|+||||+||||++|.+
T Consensus 404 ~vL~~isl~i~~G-------~~~~ivG~sGsGKSTl~~ll 436 (1284)
T 3g5u_A 404 QILKGLNLKVKSG-------QTVALVGNSGCGKSTTVQLM 436 (1284)
T ss_dssp CSEEEEEEEECTT-------CEEEEECCSSSSHHHHHHHT
T ss_pred cceecceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence 6899999999999 99999999999999999987
No 87
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.65 E-value=9.9e-06 Score=73.47 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=30.2
Q ss_pred eEecCccceeccCCCCCCCCc--------------------EEEEEeCCCCChHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPT--------------------VLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~--------------------~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++++++.| + .++|+||||+|||||||++.
T Consensus 37 ~~l~~is~~i~~G-------e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 37 EILNLIELRMRAG-------NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp HHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred HHhhhccceecCC-------CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHh
Confidence 4577888999888 6 99999999999999999884
No 88
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.65 E-value=2.7e-05 Score=62.87 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++|+||||+||||++|.++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 899999999999999999984
No 89
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.65 E-value=2.8e-05 Score=67.80 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++|.||||||||||+|.++
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHH
Confidence 899999999999999999984
No 90
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.64 E-value=1.5e-05 Score=69.19 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++|+||||+||||++|.++-
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999998843
No 91
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.63 E-value=1.9e-05 Score=69.57 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=30.8
Q ss_pred eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...+.++++.+..+ .+++|+||||+||||||+.++-
T Consensus 42 ~~~l~~i~~~~~~g-------~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 42 RDLIDAVLPQTGRA-------IRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHHGGGCCCS-------EEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHhCCcccCCC-------eEEEEECCCCCCHHHHHHHHHH
Confidence 34677788888888 9999999999999999999843
No 92
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.62 E-value=5.8e-05 Score=58.61 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...+|+||||+||||+|..+.++
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998764
No 93
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.56 E-value=4.2e-05 Score=63.68 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++|+||||+||||++|.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999987
No 94
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.52 E-value=3.9e-05 Score=68.18 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
..++|+|||||||||+|+.+ +++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 79999999999999999987 443
No 95
>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}
Probab=97.51 E-value=0.00012 Score=57.19 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=56.6
Q ss_pred CCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeeccEEEEEeecccccCCCcEEEEeEEecccCCCCch
Q psy13262 12 DDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDG 91 (229)
Q Consensus 12 ~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~~ 91 (229)
++.+||+++++++++..|.||++|..|.|. .++ .| | .+++|+- -..++...--|.||.+++....-|.+
T Consensus 61 ~~~VvtDl~vi~~Kd~lP~Gf~~I~~T~dt-~~~-a~-------r-KkrLCvK-~~p~~s~~~AVtDI~i~~ksK~~~~~ 129 (152)
T 3tow_A 61 LGNVLVDMKLIDIKDTLPVGFIPIQETVDT-QEV-AF-------R-KKRLCIK-FIPRDSTEAAICDIRIMGRTKQAPPQ 129 (152)
T ss_dssp GCEEEEEEEEEETTSCCCTTCEECCBCTTT-CCB-CC-------S-SEEEEEE-EEEGGGCSCEEEEEEEEETTCCCCTT
T ss_pred CCCeEEEEEEEeCCCCCCCCcEEeeccCCc-chh-hh-------c-eeEEEEE-EccCCccceeEEEEEEEecCCCCCCC
Confidence 578999999999999999999999999998 322 22 2 4667763 33445568889999999988666777
Q ss_pred hhHH
Q psy13262 92 FCLI 95 (229)
Q Consensus 92 y~~l 95 (229)
|+.+
T Consensus 130 yt~~ 133 (152)
T 3tow_A 130 YTFI 133 (152)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 7654
No 96
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.48 E-value=6.8e-05 Score=66.74 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
.+.+|+||||+||||+|+.+.++.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHhc
Confidence 499999999999999999997654
No 97
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.47 E-value=5.2e-05 Score=61.12 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++|+||||+||||++|.++-
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999843
No 98
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.45 E-value=4.3e-05 Score=78.38 Aligned_cols=33 Identities=39% Similarity=0.512 Sum_probs=31.4
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.+|++++|++++| ++++|+||+||||||+++.+
T Consensus 1093 ~VL~~isl~I~~G-------e~vaIVG~SGsGKSTL~~lL 1125 (1321)
T 4f4c_A 1093 EILKGLSFSVEPG-------QTLALVGPSGCGKSTVVALL 1125 (1321)
T ss_dssp CSEEEEEEEECTT-------CEEEEECSTTSSTTSHHHHH
T ss_pred ccccceeEEECCC-------CEEEEECCCCChHHHHHHHH
Confidence 5899999999999 99999999999999999977
No 99
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.42 E-value=2.7e-05 Score=72.46 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=25.3
Q ss_pred cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
..+++.++.| ..++|+|||||||||+|+++
T Consensus 251 ~~l~~~v~~g-------~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 251 AYLWLAIEHK-------FSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp HHHHHHHHTT-------CCEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHhCC-------CEEEEECCCCCCHHHHHHHH
Confidence 4455666777 78999999999999999987
No 100
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.40 E-value=6.6e-05 Score=66.98 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||||+||||+|+.+.-
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 8999999999999999998843
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.39 E-value=0.00011 Score=63.78 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.++++|+||||+||||+++.++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 389999999999999999998543
No 102
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.38 E-value=9.5e-05 Score=67.08 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||||+||||+|+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999873
No 103
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.37 E-value=7.5e-05 Score=76.62 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.8
Q ss_pred CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+...|++++|++++| +.++|+||+||||||+++.+
T Consensus 430 ~~~vL~~isl~i~~G-------~~vaivG~sGsGKSTll~ll 464 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAG-------QTVALVGSSGCGKSTIISLL 464 (1321)
T ss_dssp TSCSEEEEEEEECTT-------CEEEEEECSSSCHHHHHHHH
T ss_pred CCceeeceEEeecCC-------cEEEEEecCCCcHHHHHHHh
Confidence 457899999999999 99999999999999999987
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.37 E-value=5.1e-05 Score=75.35 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=30.0
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.|++++|++..| ++++|+|+||+|||||+|.+
T Consensus 657 ~Lk~Vsl~I~~G-------eivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLG-------VLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESS-------SEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCC-------CEEEEEcCCCCCHHHHHHHH
Confidence 378999999999 99999999999999999986
No 105
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.37 E-value=2.5e-05 Score=66.15 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.5
Q ss_pred CCeeEecCccceecc---CCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 172 PNSTVIGRCKEDVES---GGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 172 p~~~~l~~~~~~~~~---~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.....++++++.+.+ + +.++|+|++|+||||+.|.++-
T Consensus 30 ~~~~~l~~~~~~i~~~l~g-------~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNG-------RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp --CHHHHHHHHTTHHHHTT-------CCEEEECSTTSCHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCC-------CEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999988 8 8999999999999999998853
No 106
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.32 E-value=6.8e-05 Score=67.15 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=30.1
Q ss_pred eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.++++.+.++ +.++|+||||+||||++|.++-
T Consensus 157 ~~l~~~~~~i~~~-------~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKK-------RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTC-------CEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence 3566777888888 8999999999999999999864
No 107
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.31 E-value=5.7e-05 Score=74.10 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=31.0
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHH-H-HHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQ-L-GLI 217 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~-i-~l~ 217 (229)
.|++++|++..| ++++|+|+||+|||||+|. + +++
T Consensus 512 ~L~~vsl~i~~G-------eiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLG-------VMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESS-------SEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCC-------CEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 478999999999 9999999999999999996 3 554
No 108
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.31 E-value=0.00013 Score=61.26 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++|+|||||||||++|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999997
No 109
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.30 E-value=0.00016 Score=63.57 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.++++|+||||+||||+++.++..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 389999999999999999998643
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.29 E-value=5.2e-05 Score=75.14 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=30.0
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.|++++|++..| ++++|+|+||+|||||++.+
T Consensus 639 ~Lk~Vsl~I~~G-------eiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 639 NLKNVSVKIPLG-------TFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SCCSEEEEEESS-------SEEECCBCTTSSHHHHHTTT
T ss_pred ccccceEEEcCC-------CEEEEEcCCCCCHHHHHHHH
Confidence 478999999999 99999999999999999985
No 111
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.29 E-value=0.00012 Score=72.43 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.7
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
.++++++++..| ++++|+||||+|||||++.+
T Consensus 599 ~Lk~Vsl~I~~G-------eiv~I~G~SGSGKSTLl~~~ 630 (916)
T 3pih_A 599 NLKNIDVEIPLG-------VFVCVTGVSGSGKSSLVMET 630 (916)
T ss_dssp TCCSEEEEEESS-------SEEEEECSTTSSHHHHHHHT
T ss_pred cccccceEEcCC-------cEEEEEccCCCChhhhHHHH
Confidence 378999999999 99999999999999998643
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.26 E-value=0.00013 Score=56.68 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
+.++|+||||+|||||++.++-..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999986543
No 113
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.22 E-value=0.00024 Score=60.24 Aligned_cols=37 Identities=32% Similarity=0.307 Sum_probs=28.9
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.+.|..+++ +.+| ++++|+||||+|||||+++++..
T Consensus 17 ~~~ld~~lgg----l~~G-------~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 17 PPPLDYVLPN----MVAG-------TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CCCCCEEETT----EETT-------SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCChheeECC----ccCC-------CEEEEEcCCCCCHHHHHHHHHHH
Confidence 3345666653 4566 99999999999999999999763
No 114
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.20 E-value=0.00021 Score=64.50 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
++.+|+||||+||||+|+.++.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 799999999999999999996653
No 115
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.20 E-value=0.00027 Score=61.77 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=30.9
Q ss_pred cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
.+++|...++ ++++|+||||+||||++..++. ++++.|--|+
T Consensus 96 ~~l~~~~~~~-------~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVl 137 (320)
T 1zu4_A 96 YRIDFKENRL-------NIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVL 137 (320)
T ss_dssp CCCCCCTTSC-------EEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEE
T ss_pred cCccccCCCC-------eEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEE
Confidence 4566665555 8999999999999999988764 3455565443
No 116
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.15 E-value=0.00026 Score=62.54 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.3
Q ss_pred ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.+.+| +++.|.||||+|||||+++++..
T Consensus 126 ggi~~G-------~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 126 GGIETQ-------AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEESS-------EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCC-------eEEEEECCCCCCHHHHHHHHHHH
Confidence 456777 99999999999999999998654
No 117
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.10 E-value=0.00045 Score=61.21 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
...+|+|+||+||||+|..|.++.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 6999999999999999999987543
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.07 E-value=0.00018 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.8
Q ss_pred ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262 182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i 214 (229)
+.+..+ ..++|+|+||+|||||++.+
T Consensus 21 ~~~~~~-------~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 21 LPSDTG-------IEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SSCSCS-------EEEEEEECTTSSHHHHHTTT
T ss_pred CCCCCC-------cEEEEECCCCCCHHHHHHHH
Confidence 556666 89999999999999999987
No 119
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.07 E-value=0.0004 Score=60.83 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.-+++|+|||||||||+++.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999884
No 120
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.05 E-value=0.00026 Score=61.15 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++|.||||+||||||+++.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999987
No 121
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.04 E-value=0.0003 Score=61.43 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=33.2
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++.+..+..+++.+..+-..+...+.++|+||||+||||++|.++-.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4556666666777766542000113368999999999999999998643
No 122
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.00 E-value=0.00056 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++|+||||+||||+++.++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 89999999999999999988643
No 123
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.0004 Score=59.15 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||||+|||||+|.++-
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3499999999999999999854
No 124
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.96 E-value=0.00046 Score=54.82 Aligned_cols=22 Identities=23% Similarity=0.307 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
-.++|.|+||+|||||++.+.-
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4789999999999999998743
No 125
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.92 E-value=0.00054 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|.||+|+||||+++.++-
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999999998853
No 126
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=0.00036 Score=60.21 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++|.||||+||||||++++
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 899999999999999999983
No 127
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.89 E-value=0.00065 Score=62.99 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++|+||||+|||||+++++..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999999999999998543
No 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.89 E-value=0.00041 Score=62.92 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=23.9
Q ss_pred eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
++....+.+++| .++|+||||+||||||++++
T Consensus 21 y~~~~vl~~vsf-------------~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 21 VYRKSVKRGFEF-------------TLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp TTTTTCC-CCCE-------------EEEEECCTTSSHHHHHHHHT
T ss_pred ECCEEEecCCCE-------------EEEEECCCCCcHHHHHHHHh
Confidence 344456666654 35999999999999999984
No 129
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.87 E-value=0.00023 Score=65.87 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...+|+|+||+||||+|+.+.++
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 49999999999999999999776
No 130
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.84 E-value=0.00065 Score=56.42 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||||+||||++|.++-
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999864
No 131
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.81 E-value=0.00067 Score=60.29 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
++++|+||||+||||||+.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 799999999999999999884
No 132
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.00026 Score=61.62 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHH-HHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL-GLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i-~l~ 217 (229)
++++|+||||+||||||+.+ ++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 89999999999999999998 443
No 133
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.81 E-value=0.00017 Score=60.13 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.+++|+||||+||||+|++++.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 58899999999999999999654
No 134
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.75 E-value=0.00053 Score=64.27 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++|+|+||+||||++|.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHH
Confidence 899999999999999999984
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.73 E-value=0.0013 Score=56.64 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
++++|+|+||+||||+++.++.. +++.|--|
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v 129 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY--YKGKGRRP 129 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH--HHHTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeE
Confidence 89999999999999999988643 45555544
No 136
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.70 E-value=0.00094 Score=56.39 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||||+||||++|.++-
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHH
Confidence 3489999999999999999864
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.62 E-value=0.00059 Score=61.79 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=26.5
Q ss_pred cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262 178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.+++++++.+ ..++|+|+|++||||||+.+.
T Consensus 148 ~~i~lelk~g-------~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 148 RRLRLELMLI-------ADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp EEEEEEECCS-------CSEEEECCGGGCHHHHHHHHC
T ss_pred eeeeeEEcCC-------CEEEEECCCCCcHHHHHHHHH
Confidence 4567777777 899999999999999999873
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.59 E-value=0.0014 Score=56.44 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++|+||||+||||+++.++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999988643
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.57 E-value=0.0015 Score=58.84 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+++.|+||||+|||||++++++..++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 89999999999999999988765543
No 140
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.50 E-value=0.00042 Score=60.32 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=31.8
Q ss_pred eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
.++++..+..+...++.| ....++++||+|+||||+++.++-.
T Consensus 27 ~~g~~~~~~~L~~~i~~g-----~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG-----KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT-----CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 445556666677777776 2233999999999999999988543
No 141
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.43 E-value=0.0013 Score=57.74 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+|+||+||||+++.++-
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999999998843
No 142
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.43 E-value=0.00095 Score=63.19 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||||+||||+|++++.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHS
T ss_pred CeEEEECCCCChHHHHHHHHhC
Confidence 3599999999999999999843
No 143
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.37 E-value=0.00058 Score=64.45 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=35.4
Q ss_pred eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++.+..+..+++.+..+ +.++|+||||+||||++|.++-
T Consensus 42 ~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhc
Confidence 4567777778888888888 8999999999999999999854
No 144
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.36 E-value=0.0022 Score=51.86 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+|++|+||||+.+.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999984
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.0027 Score=52.69 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||+|+||||++|.++-
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.23 E-value=0.0032 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
..+++|+||+|+||||+.+.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999987
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0024 Score=55.26 Aligned_cols=21 Identities=48% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q psy13262 196 VLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 196 ~~~ltGpN~~GKStlLk~i~l 216 (229)
.++|+||||+||||+++.++-
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998854
No 148
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.14 E-value=0.0026 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++|+|++|+||||+.+.++
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3789999999999999999875
No 149
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.11 E-value=0.0035 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+++|+|++|+||||||+.+.-
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999998853
No 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.11 E-value=0.0038 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++|+||+|+||||+.+.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3789999999999999999874
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.03 E-value=0.0053 Score=55.80 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=27.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|.|++|+|||||+..++...... .|.||+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl 236 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVA 236 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEE
Confidence 899999999999999999988765543 466664
No 152
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.00 E-value=0.0045 Score=53.36 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++++++|+||+||||++..++.. +++.|--|+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~ 130 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVG 130 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEE
Confidence 89999999999999999887543 455565543
No 153
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.98 E-value=0.0053 Score=54.40 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+++.|.||||+|||||+..++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999988654
No 154
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.92 E-value=0.005 Score=49.63 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...++|+||.|+||||+++.++-.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999999988543
No 155
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.89 E-value=0.0045 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||+|+|||++.|.++-
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 7899999999999999998864
No 156
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.007 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.++|.||+|+||||++....+..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~ 102 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFI 102 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchh
Confidence 79999999999999999877655443
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.72 E-value=0.0065 Score=48.30 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
..++|+||+|+|||++++.++-. +.+.|.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeE
Confidence 68999999999999999977543 33445443
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.70 E-value=0.0069 Score=52.67 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=18.8
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy13262 196 VLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 196 ~~~ltGpN~~GKStlLk~i~ 215 (229)
.++|+||+|+||||+++.++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999875
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.68 E-value=0.0089 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
+.+.|.||||+|||||+..++....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999988865543
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.67 E-value=0.0062 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.++|+||+|+||||+++.++-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998753
No 161
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.67 E-value=0.0098 Score=53.93 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++++++|+||+||||++..++. .++..|.-|+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vl 130 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPL 130 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEE
Confidence 7999999999999999887754 3455565443
No 162
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.64 E-value=0.0082 Score=53.18 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=24.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
..++|+||+|+||||++|.+..... ..|..|
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~ 66 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREY--MQGSRV 66 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHH--HCCCEE
Confidence 6899999999999999999865443 345444
No 163
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.64 E-value=0.0071 Score=56.35 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||||+||||++|.++-.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 79999999999999999998644
No 164
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.62 E-value=0.0085 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|.||||+++.++-
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998853
No 165
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.60 E-value=0.0057 Score=56.60 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||||+|||||+|.++-
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999864
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.57 E-value=0.0092 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++++.++-
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998754
No 167
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.54 E-value=0.0063 Score=59.38 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||||+||||++|.++-
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 7899999999999999999853
No 168
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.52 E-value=0.0078 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||+|+||||++|.++-
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 7899999999999999998853
No 169
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.51 E-value=0.0092 Score=54.25 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
..+++++||||+||||++..++. .++..|.-|
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kV 128 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKV 128 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence 38999999999999999887763 345555544
No 170
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.32 E-value=0.0084 Score=55.64 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.5
Q ss_pred ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.+++..+ .+++|.|++|+||||+|+++.+..++
T Consensus 160 v~ldL~~~-------pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 160 VVADLAKM-------PHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp EEEEGGGS-------CSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcccC-------ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44555555 79999999999999999998654443
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.31 E-value=0.014 Score=51.41 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|.|++|.|||||+..++..... .|.||+
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl 78 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVA 78 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE
Confidence 89999999999999999998776654 677765
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.0041 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||+|.||||+++.++-.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988644
No 173
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.26 E-value=0.013 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||+|+|||++.|.++-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 58999999999999999988654
No 174
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.23 E-value=0.0099 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++|+||+|+||||+++.++-
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 36899999999999999998864
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.12 E-value=0.011 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++|+||.|+|||++++.++-
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999998754
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.03 E-value=0.017 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++.+.++-
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 7899999999999999998853
No 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.01 E-value=0.014 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|++|+|||||++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999874
No 178
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.95 E-value=0.019 Score=48.67 Aligned_cols=22 Identities=45% Similarity=0.443 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++|+|+.||||||+.+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999886
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.93 E-value=0.018 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||.|+||||+.+.++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999885
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.84 E-value=0.02 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.273 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
...++|+||+|+||||+++.++-..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999986543
No 181
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.79 E-value=0.014 Score=52.53 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=26.5
Q ss_pred CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++.+.+.+| +.+.|.||+|+||||+++.++-.
T Consensus 166 D~~~pi~rG-------Qr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRG-------QRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTT-------CEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCC-------cEEEEecCCCCChhHHHHHHHHH
Confidence 455666677 99999999999999999987543
No 182
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.75 E-value=0.015 Score=57.15 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=26.2
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMR 212 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk 212 (229)
.|+++++++..+ +.++|||..|||||||.-
T Consensus 25 NLkni~v~iP~~-------~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 25 NLKDISVKVPRD-------ALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp TCCSEEEEEESS-------SEEEEESSTTSSHHHHHT
T ss_pred CCCCeeEEecCC-------CEEEEECCCCCCHHHHHH
Confidence 467788888888 999999999999999963
No 183
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.67 E-value=0.026 Score=51.01 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|.|++|.|||||+..++..... +.|.||+
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl 233 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVG 233 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEE
Confidence 89999999999999999998876654 2476764
No 184
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.61 E-value=0.024 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||+|+|||+++|.++-
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.59 E-value=0.026 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++.+.++-
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.026 Score=43.90 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|+.|+|||||++.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999874
No 187
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.52 E-value=0.018 Score=57.39 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.9
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlL 211 (229)
.|+++++++..+ +.++|||+.|||||+|-
T Consensus 35 NLkni~v~iP~~-------~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 35 NLRSVDLDLPRD-------ALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SCCSEEEEEESS-------SEEEEEESTTSSHHHHH
T ss_pred ccCceeeeccCC-------CEEEEECCCCCcHHHHH
Confidence 577888888888 99999999999999983
No 188
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.52 E-value=0.021 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
....++|+|+.|+||||+.+.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999999863
No 189
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.52 E-value=0.018 Score=57.22 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.8
Q ss_pred EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHH
Q psy13262 176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlL 211 (229)
.|+++++++..+ +.++|||+.|||||+|-
T Consensus 33 NLkni~v~iP~~-------~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRG-------KLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETT-------SEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCC-------cEEEEECCCCCCHHHHH
Confidence 577888888888 99999999999999984
No 190
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.51 E-value=0.02 Score=51.60 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|+||+|||||++.+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999874
No 191
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.49 E-value=0.02 Score=50.71 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+|+|++||||||+.+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999884
No 192
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.46 E-value=0.029 Score=49.02 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.+.|.||+|+|||||+..++..+.+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999998776433
No 193
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.30 E-value=0.035 Score=50.58 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
..+++++|++|+||||++.-++ ..+++.|.-|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA--~~l~~~G~kVl 132 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA--RYFQKRGYKVG 132 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH--HHHHTTTCCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHH--HHHHHCCCeEE
Confidence 4799999999999999976654 45666676553
No 194
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.27 E-value=0.028 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|.|||++++.++-
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998853
No 195
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.25 E-value=0.034 Score=52.15 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=25.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|+||+|+||||+++.+. ..+.+.|.+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~--~~l~~~g~~Vl 236 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVA--DLAESLGLEVG 236 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHH--HHHHHTTCCEE
T ss_pred CEEEEEcCCCCCHHHHHHHHH--HHHHhcCCeEE
Confidence 799999999999999988753 44556677664
No 196
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.24 E-value=0.022 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++|+||.|.||||+++.++-
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998853
No 197
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.17 E-value=0.027 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|++++|||||++.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999873
No 198
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.08 E-value=0.028 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+|++++||||+|+.+.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 589999999999999999874
No 199
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.06 E-value=0.044 Score=49.70 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhc-CCCcc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQM-ENPQL 228 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~-G~~v~ 228 (229)
.++++++|++|+||||+.- .|+..+++. |.-|+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~--~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVG--KLGKFLREKHKKKVL 133 (433)
T ss_dssp SEEEEEECSTTSSHHHHHH--HHHHHHHHTSCCCEE
T ss_pred CeEEEEECCCCCCHHHHHH--HHHHHHHHhcCCeEE
Confidence 4799999999999999954 455666776 76664
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.06 E-value=0.041 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||.|+|||++.+.++-.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988543
No 201
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.05 E-value=0.039 Score=45.36 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++++|.||.||||+|.-+.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999988774
No 202
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.98 E-value=0.022 Score=50.17 Aligned_cols=19 Identities=37% Similarity=0.544 Sum_probs=17.5
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy13262 196 VLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 196 ~~~ltGpN~~GKStlLk~i 214 (229)
.++|+|++|+|||||++++
T Consensus 39 ~I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSL 57 (361)
T ss_dssp CEEECCCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4799999999999999986
No 203
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.91 E-value=0.038 Score=48.38 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|+||+|||||++.+
T Consensus 168 ~~v~lvG~~gvGKSTLin~L 187 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKAL 187 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999987
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.89 E-value=0.043 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
+.+.|.||+|+|||||+.+++..+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 899999999999999999887654
No 205
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.88 E-value=0.043 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.++|+||.|.||||+++.++-
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 206
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.82 E-value=0.039 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...++|+||.|+|||++.+.++-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 378999999999999999988654
No 207
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.74 E-value=0.047 Score=46.94 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++.|.++-
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 7899999999999999998854
No 208
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.72 E-value=0.018 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++.+.++-
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999998864
No 209
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.70 E-value=0.052 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++|+||.|+|||++.|.++-
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37889999999999999998864
No 210
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.63 E-value=0.042 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++|+||.|.|||++.+.++
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 3579999999999999999884
No 211
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.56 E-value=0.05 Score=45.23 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
..++|.|+.|+||||.++.+. ..+...|.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~--~~l~~~~~~ 57 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVV--ETLQQNGID 57 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHH--HHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHH--HHHHhcCCC
Confidence 799999999999999998874 344556665
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.55 E-value=0.044 Score=41.45 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.|+||.|+|||++.|.++-
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998753
No 213
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.55 E-value=0.052 Score=49.29 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|.|+.|.|||||+-.++...... |.||+
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl 229 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVN 229 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEE
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEE
Confidence 899999999999999999888776553 77765
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.54 E-value=0.079 Score=42.85 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
+.++|.|+.|+|||+|.-+++.... .+.|-+|
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v 62 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPG 62 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCc
Confidence 8999999999999999888765443 3445444
No 215
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.51 E-value=0.065 Score=46.15 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=25.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|.|+.|+|||||+..++..... -|-||+
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl 100 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD--NDDVVN 100 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE
Confidence 89999999999999999988766533 345543
No 216
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.50 E-value=0.068 Score=46.77 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.+++|+|+.|+||||++..++.. ++..|..|
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~--l~~~g~kV 110 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMH--LIERGHRV 110 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--HHTTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhCCCce
Confidence 68999999999999999876543 45555544
No 217
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.47 E-value=0.058 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.++|+||.|.|||++.+.++-.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988643
No 218
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.45 E-value=0.055 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||.|+|||++.|.++-
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 7899999999999999998864
No 219
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.42 E-value=0.042 Score=45.42 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|.|+.|+||||..+.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CEEEEECCC---CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999884
No 220
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.39 E-value=0.068 Score=47.16 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=24.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
+.+.|.|++|+|||||...++.... +.|-+|
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~--~~g~~v 94 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTC 94 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeE
Confidence 8999999999999999988765543 345554
No 221
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.36 E-value=0.06 Score=42.99 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+|+.|+||||++..+.-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999987743
No 222
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.34 E-value=0.052 Score=42.22 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 689999999999999999874
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.20 E-value=0.066 Score=45.94 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILA 221 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma 221 (229)
+.+.|.||+|+|||+|...++..+.+.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~ 125 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNP 125 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 899999999999999999988765443
No 224
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.17 E-value=0.061 Score=47.28 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||.|+||||+-+.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 689999999999999977765
No 225
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.15 E-value=0.073 Score=47.07 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...++|.|+.||||||++|++-++
T Consensus 33 ~~killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Confidence 378999999999999999998543
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.09 E-value=0.054 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|.|||++.|.++-
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 227
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.08 E-value=0.08 Score=43.23 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=17.2
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+||.|+||||+...+
T Consensus 35 ~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 78999999999999985443
No 228
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.07 E-value=0.059 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++|+||.|+|||++.|.++-
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998853
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.04 E-value=0.045 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+++|+|++|+||||+...++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999877654
No 230
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.00 E-value=0.075 Score=42.54 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+|+.|+|||||+..+.-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999987743
No 231
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.88 E-value=0.074 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|.||||+++.++-
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998853
No 232
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.88 E-value=0.1 Score=44.75 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
..++|+||.|.|||+|++.++-... .+.|.+|
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~-~~~g~~v 184 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS-EKKGVST 184 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-HhcCCcE
Confidence 7899999999999999997765332 0445554
No 233
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.86 E-value=0.066 Score=42.21 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 689999999999999999874
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.78 E-value=0.029 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.++|+||+|+|||++.|.++-.
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998654
No 235
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.075 Score=42.28 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 579999999999999999764
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.70 E-value=0.076 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.++|+||.|+|||+|...++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 78899999999999999998754
No 237
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.081 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.++|+||.|+||||+.+.++-
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999998854
No 238
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.65 E-value=0.072 Score=41.66 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999873
No 239
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.46 E-value=0.078 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++.|.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 6799999999999999998864
No 240
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.45 E-value=0.064 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|+||||+||||++.++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999998887743
No 241
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.43 E-value=0.087 Score=41.18 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999874
No 242
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.39 E-value=0.071 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||.|+|||++.|.++-.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998643
No 243
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.38 E-value=0.089 Score=41.93 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999874
No 244
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.33 E-value=0.11 Score=40.77 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.0
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.-.++|.|+.++|||||++.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999976
No 245
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.29 E-value=0.079 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+||||+.+.++-
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999998864
No 246
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.25 E-value=0.063 Score=45.51 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|.|||++++.++-
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 247
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.21 E-value=0.092 Score=41.20 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.-.++|.|+.++|||||++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 3689999999999999999874
No 248
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.21 E-value=0.097 Score=41.75 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 579999999999999999874
No 249
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.14 E-value=0.091 Score=44.57 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++|+||-|.||||+++.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 799999999999999999874
No 250
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.11 E-value=0.097 Score=41.53 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|+.++|||||++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHh
Confidence 589999999999999998763
No 251
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.11 Score=41.19 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHh
Confidence 689999999999999999874
No 252
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.98 E-value=0.11 Score=41.78 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.1
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.-.++|+|+.++|||||++.+
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l 49 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIV 49 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999987
No 253
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.97 E-value=0.11 Score=40.94 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998874
No 254
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.94 E-value=0.11 Score=47.05 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.++|+||.|+|||++.+.++-
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998864
No 255
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.12 Score=46.78 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.++|.||.|+|||.+.|.+|-
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.83 E-value=0.14 Score=43.29 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=28.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
.++++++|.-|.||||+ ++.|+..||+.|..|++
T Consensus 41 ~~vI~v~~KGGvGKTT~--a~nLA~~La~~G~~Vll 74 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTT--SSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp CEEEEEECSTTSSHHHH--HHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCccHHHH--HHHHHHHHHHCCCeEEE
Confidence 47888899999999998 56777889999988763
No 257
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.82 E-value=0.11 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+.++|+||-|.|||+|++.++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999874
No 258
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.71 E-value=0.1 Score=43.17 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.|+||.|.|||++.|.++-
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999999999864
No 259
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.64 E-value=0.068 Score=42.58 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|+.++|||||++.+
T Consensus 30 ~~i~v~G~~~~GKSslin~l 49 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVL 49 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999987
No 260
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.64 E-value=0.092 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|.||.|.||||+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999986653
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.64 E-value=0.16 Score=44.92 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.+.|.||.|+|||||...++.... +.|-+|+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~--~~g~~vl 106 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ--KAGGTCA 106 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEE
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEE
Confidence 8999999999999999988765543 3455553
No 262
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.64 E-value=0.12 Score=43.45 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||.|.||||+.+.++-.
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999988543
No 263
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.13 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.++|.||.|+|||.+.|.+|-
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 458999999999999999998863
No 264
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.62 E-value=0.11 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++.|.++-
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 265
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.14 Score=46.57 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.++|.||.|+|||.+.|.+|-
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999998863
No 266
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.54 E-value=0.13 Score=40.73 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 689999999999999998764
No 267
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.38 E-value=0.13 Score=40.59 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 478999999999999999874
No 268
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.27 E-value=0.13 Score=45.36 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||.|.|||++.+.++
T Consensus 149 ~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999884
No 269
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.23 E-value=0.065 Score=40.40 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+.|+||.|+|||++.|.++
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 568999999999999998764
No 270
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.19 E-value=0.13 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...++|+||+|.|||++.+.++..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999988654
No 271
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.16 E-value=0.17 Score=46.77 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
..+++|+|++|+||||++..++. .+++.|.-|
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~--~l~~~G~kV 132 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAY--YYQRKGWKT 132 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeE
Confidence 47899999999999999877653 345556544
No 272
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.08 E-value=0.11 Score=45.43 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.5
Q ss_pred CcEEEE--EeCCCCChHHHHHHHH
Q psy13262 194 PTVLLL--TGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~l--tGpN~~GKStlLk~i~ 215 (229)
...++| +||.|.||||+++.++
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHH
Confidence 368888 9999999999999875
No 273
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.06 E-value=0.14 Score=40.84 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLA 48 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHh
Confidence 689999999999999999764
No 274
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=90.98 E-value=0.13 Score=48.23 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
.+++|.|..|+|||++|+++.+..++
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999998765443
No 275
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.93 E-value=0.16 Score=41.81 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.7
Q ss_pred cEEEEEeCCCCChHH-HHHHH
Q psy13262 195 TVLLLTGPNMGGKST-VMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKSt-lLk~i 214 (229)
.+.+||||-++|||| ||+.+
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~ 49 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRL 49 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 899999999999999 66664
No 276
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.92 E-value=0.085 Score=48.26 Aligned_cols=33 Identities=24% Similarity=0.046 Sum_probs=26.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
+.++|.|+.|.|||||+-.++..... +.|-||+
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl 275 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVG 275 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEE
Confidence 89999999999999999888765432 2376664
No 277
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.83 E-value=0.13 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||.|+|||++.+.++-.
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHH
Confidence 35999999999999999988543
No 278
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.74 E-value=0.18 Score=46.32 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++|+||.|+|||++.|.++-
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 36899999999999999998853
No 279
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.61 E-value=0.17 Score=40.86 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=18.0
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
-.++|.|+.+.|||||++.+
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~ 57 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999875
No 280
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.47 E-value=0.097 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|.||.|.|||++.+.++-
T Consensus 47 ~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999998864
No 281
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.36 E-value=0.17 Score=45.52 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.++|.||.|+|||.+.|.+|-
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Confidence 347899999999999999998863
No 282
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.29 E-value=0.098 Score=44.74 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|+|||++.|.++-
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4599999999999999998864
No 283
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.25 E-value=0.21 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.++|.||.|+|||++.+.++-.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 68999999999999999988654
No 284
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.22 E-value=0.2 Score=41.99 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q psy13262 196 VLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 196 ~~~ltGpN~~GKStlLk~i~l 216 (229)
.++|+||.|.|||++.+.++-
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999998854
No 285
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.21 E-value=0.25 Score=42.89 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=17.4
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|+.|+||||+...+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l 164 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALEL 164 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHH
Confidence 78999999999999986543
No 286
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.20 E-value=0.19 Score=42.17 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.4
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy13262 196 VLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 196 ~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++|.++.|||||++.+.
T Consensus 101 ~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred heEEeCCCCCCHHHHHHHHh
Confidence 78999999999999999874
No 287
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.17 E-value=0.28 Score=41.80 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=27.5
Q ss_pred CcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 194 PTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 194 ~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
.++++|||+. |.||||+ ++.|+..||+.|..|++
T Consensus 104 ~kvI~vts~kgG~GKTtv--a~nLA~~lA~~G~rVLL 138 (299)
T 3cio_A 104 NNILMITGATPDSGKTFV--SSTLAAVIAQSDQKVLF 138 (299)
T ss_dssp CCEEEEEESSSSSCHHHH--HHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCChHHH--HHHHHHHHHhCCCcEEE
Confidence 4799999985 7799998 56777788999987763
No 288
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.09 E-value=0.14 Score=44.43 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+.|+||.|.|||++.|.++
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999884
No 289
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.08 E-value=0.19 Score=44.82 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.+++|.|+.|+|||++++.+....+ +.|.++
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~--~~g~~v 84 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGL--LRGDRM 84 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHH--HTTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCCcE
Confidence 7999999999999999876644332 245443
No 290
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.07 E-value=0.16 Score=46.13 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|.||.|+||||+.|.++-
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 291
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.81 E-value=0.33 Score=41.23 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=27.6
Q ss_pred CcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 194 PTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 194 ~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
.++++|||+. |.||||+ ++.|+..||+.|..|++
T Consensus 92 ~kvI~vts~kgG~GKTtv--a~nLA~~lA~~G~rVLL 126 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFV--CANLAAVISQTNKRVLL 126 (286)
T ss_dssp CCEEEEEESSSSSSHHHH--HHHHHHHHHTTTCCEEE
T ss_pred CeEEEEECCCCCCcHHHH--HHHHHHHHHhCCCCEEE
Confidence 4788898876 6799998 56777889999988763
No 292
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.78 E-value=0.21 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++++|..|+||||+.+.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999875
No 293
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.78 E-value=0.2 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...+++.||.|.|||++.+.++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHH
Confidence 3678889999999999999885
No 294
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.70 E-value=0.35 Score=40.65 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=26.8
Q ss_pred CcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 194 PTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 194 ~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
.+++.|||+. |.||||+ ++.|+..||+.|..|+
T Consensus 82 ~kvI~vts~kgG~GKTt~--a~nLA~~lA~~G~rVL 115 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTI--AANLAVAYAQAGYKTL 115 (271)
T ss_dssp CCEEEEECSSTTSSHHHH--HHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCcHHHH--HHHHHHHHHhCCCeEE
Confidence 4789999874 6799998 5667778899998776
No 295
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.60 E-value=0.23 Score=41.38 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.+++.|+.|+|||||++.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999998874
No 296
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=89.59 E-value=0.25 Score=43.39 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
-.++|.|...|||||++|++=++
T Consensus 33 ~klLlLG~geSGKST~~KQmkii 55 (353)
T 1cip_A 33 VKLLLLGAGESGKSTIVKQMKII 55 (353)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCchhHHHHHHHh
Confidence 58899999999999999998654
No 297
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.56 E-value=0.25 Score=46.94 Aligned_cols=30 Identities=33% Similarity=0.305 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
..++|+|..|+||||+.|.++- .|.+.|.+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~--~L~~~G~~ 82 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEE--YLVCHGIP 82 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH--HHHHTTCC
T ss_pred CEEEEEeCCCCCHHHHHHHHHH--HHHhcCCe
Confidence 7899999999999999998743 23344554
No 298
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.54 E-value=0.24 Score=41.13 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|..|+|||||++.+.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999998763
No 299
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.51 E-value=0.21 Score=41.70 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|..++|||||+..+.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 689999999999999999884
No 300
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.45 E-value=0.26 Score=46.33 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
+.++|+|+.|+||||+++.+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 79999999999999998866
No 301
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.18 E-value=0.24 Score=45.35 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.++|.||.|+|||.+.|.+|-
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh
Confidence 468999999999999999998863
No 302
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.18 E-value=0.44 Score=43.66 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.++|.||+|.|||||++.+....-.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh
Confidence 78999999999999999988665443
No 303
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.15 E-value=0.29 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.++|.||.|+|||.+.|.+|-
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHH
Confidence 458999999999999999998863
No 304
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.13 E-value=0.27 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++|+|+.|+||||+.|.++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La 417 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQ 417 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHH
Confidence 3679999999999999999874
No 305
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.95 E-value=0.29 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+.++|.||.|+|||++.|.++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45889999999999999999886
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.82 E-value=0.2 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...++|+||+|+|||++++.++-.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999988654
No 307
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.39 E-value=0.41 Score=41.28 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
.++++|+|.=|-||||. ++-|+..||+.|.=|+
T Consensus 48 aKVIAIaGKGGVGKTTt--avNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTT--SSNLSAAFSILGKRVL 80 (314)
T ss_dssp CEEEEEECSTTSSHHHH--HHHHHHHHHHTTCCEE
T ss_pred ceEEEEECCCccCHHHH--HHHHHHHHHHCCCeEE
Confidence 38999999999999998 7888999999998765
No 308
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.35 E-value=0.32 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++++|.+|+||||+-+.++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998874
No 309
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.33 E-value=0.41 Score=43.13 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMEN 225 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~ 225 (229)
..++|+|+-|+||||+++.++ ..|.+.|.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~--~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFII--EALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHH--HHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHH--HHHHhcCC
Confidence 499999999999999997653 33444443
No 310
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.20 E-value=0.38 Score=45.37 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
...+|.||.|.|||+.+- .++..+.+.|..|+
T Consensus 206 ~~~lI~GPPGTGKT~ti~--~~I~~l~~~~~~IL 237 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVV--EIILQAVKQGLKVL 237 (646)
T ss_dssp SEEEEECCTTSCHHHHHH--HHHHHHHHTTCCEE
T ss_pred CceEEECCCCCCHHHHHH--HHHHHHHhCCCeEE
Confidence 589999999999998854 34444555677765
No 311
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.69 E-value=0.39 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+.++|+||-|.||||+.+.++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHH
Confidence 35899999999999999998774
No 312
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.48 E-value=0.11 Score=40.95 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 578999999999999997763
No 313
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.61 E-value=0.32 Score=41.51 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+||.|.|||++.+.++-
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 6789999999999999999865
No 314
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.53 E-value=0.5 Score=41.42 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCcEEEEEe-CCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 193 KPTVLLLTG-PNMGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 193 ~~~~~~ltG-pN~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
..++++++| .-|.||||+ ++.|+..||+.|..|++
T Consensus 142 ~~kvIav~s~KGGvGKTT~--a~nLA~~La~~g~rVll 177 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTV--AAACAIAHANMGKKVFY 177 (373)
T ss_dssp SCEEEEEECSSTTSSHHHH--HHHHHHHHHHHTCCEEE
T ss_pred CceEEEEECCCCCChHHHH--HHHHHHHHHhCCCCEEE
Confidence 457788775 788999999 66777888888988763
No 315
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.23 E-value=0.28 Score=45.20 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.|.||.|.|||++.|.++-
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 6899999999999999999864
No 316
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.07 E-value=0.5 Score=38.19 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI 229 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~ 229 (229)
..++|.++||-||||+ .+|+..=.+..|..|++
T Consensus 29 g~i~v~tG~GkGKTTa--A~GlalRA~g~G~rV~~ 61 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTA--AFGTAARAVGHGKNVGV 61 (196)
T ss_dssp CCEEEEESSSSCHHHH--HHHHHHHHHHTTCCEEE
T ss_pred ceEEEECCCCCCHHHH--HHHHHHHHHHCCCeEEE
Confidence 4666677799999998 57777777788988763
No 317
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.98 E-value=0.083 Score=41.46 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.7
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
-.++|.|+.++|||||++.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSS
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999998764
No 318
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.79 E-value=0.43 Score=44.37 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
...++|+|+.|+||||+.+.++- .+.+.|.++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~--~L~~~G~~~ 403 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILAT--MLQARGRKV 403 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred ceEEEccCCCCCCHHHHHHHHHH--HhhhcCCeE
Confidence 36899999999999999998743 233445443
No 319
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.17 E-value=0.42 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||+|.|||++.|.++-.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988654
No 320
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.99 E-value=0.55 Score=39.31 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=25.1
Q ss_pred cEEEEEe---CCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTG---PNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltG---pN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++++|++ .-|.||||+- +.|+..||+.|..|+
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a--~nLA~~la~~G~rVl 69 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLS--TMFAYLTDKLNLKVL 69 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHH--HHHHHHHHHTTCCEE
T ss_pred cEEEEEeccCCCCchHHHHH--HHHHHHHHhCCCeEE
Confidence 5677776 7899999994 556678889998876
No 321
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.86 E-value=0.51 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...++|+||.|+|||++.+.++..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 378999999999999999988653
No 322
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.82 E-value=0.57 Score=39.67 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
...++|.||.|.|||.+.+.++-
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999997764
No 323
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.61 E-value=0.91 Score=39.64 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
.++.|.||.|+|||||+-+++...
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999977765443
No 324
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=85.49 E-value=0.63 Score=41.66 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
-.++|.|+-.|||||++|++=++.
T Consensus 41 ~klLLLG~geSGKSTi~KQmkiih 64 (402)
T 1azs_C 41 HRLLLLGAGESGKSTIVKQMRILH 64 (402)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCchhhHHHHHHHHh
Confidence 588999999999999999986653
No 325
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.33 E-value=0.65 Score=48.85 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=25.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
+.++|.||+|.|||||+..++.... +.|-+|
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa--~~g~~V 763 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTC 763 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHH--HcCCCe
Confidence 8999999999999999998876554 345454
No 326
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=85.27 E-value=0.44 Score=41.10 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.1
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
-.++|.|+.++|||||++.+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l 185 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKL 185 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 57999999999999999875
No 327
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=84.82 E-value=0.59 Score=42.53 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|+.++|||||++.+.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~ 245 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWS 245 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHh
Confidence 469999999999999999874
No 328
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=84.82 E-value=0.62 Score=39.16 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|+.++|||||++.+.
T Consensus 156 ~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999998764
No 329
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.75 E-value=0.73 Score=43.32 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
...+|.||.|+|||+++..+.. .++.+.|..|+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~-~l~~~~~~~il 228 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVY-HLARQGNGPVL 228 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH-HHHTSSSCCEE
T ss_pred CCeEEECCCCCCHHHHHHHHHH-HHHHcCCCeEE
Confidence 6899999999999999865532 22233565554
No 330
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.68 E-value=0.69 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
..++|+||.|+|||++.|.++-.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999988643
No 331
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=84.66 E-value=0.51 Score=41.87 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|..-+||||||+.+.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt 93 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLT 93 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999873
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.61 E-value=0.6 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
...++|+||.|.|||++.+.++-.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999988654
No 333
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=84.04 E-value=0.86 Score=39.43 Aligned_cols=17 Identities=41% Similarity=0.370 Sum_probs=15.8
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
..++|+|+.|+||||+.
T Consensus 148 ~gvli~G~sG~GKStla 164 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECA 164 (312)
T ss_dssp EEEEEEESSSSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 78999999999999985
No 334
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=83.71 E-value=0.87 Score=40.98 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
++..|.|+.|.||||++++|+-..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999998876543
No 335
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=83.66 E-value=0.83 Score=44.45 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
...+|+||.|.||||++..+. ..++.+.|..|+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i-~~l~~~~~~~il 404 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVL 404 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHH-HHHHTTCSSCEE
T ss_pred CeEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcEE
Confidence 689999999999999986553 222333555554
No 336
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=83.50 E-value=0.62 Score=43.07 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+|..||||||+=|.++
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La 416 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALL 416 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHH
T ss_pred eEEEecccCCCCHHHHHHHHH
Confidence 689999999999999988774
No 337
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=83.47 E-value=0.71 Score=42.89 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|..++|||||++.+
T Consensus 66 ~~V~vvG~~n~GKSTLIN~L 85 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYL 85 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999876
No 338
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=83.32 E-value=0.9 Score=38.38 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|..+.|||||++.+.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEecCCCchHHHHHHHh
Confidence 579999999999999999873
No 339
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=83.14 E-value=0.6 Score=41.47 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..|+|-|+-|+||||+++.++
T Consensus 50 ~fIt~EG~dGsGKTT~~~~La 70 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLV 70 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999874
No 340
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.72 E-value=0.9 Score=43.59 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
..+.|+||.|.|||++.|.++-..
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999886544
No 341
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=82.45 E-value=0.95 Score=41.12 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i 214 (229)
..++.+|.|+-|+||||+++.+
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~ 181 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSR 181 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHH
T ss_pred cccEEEEEcCCCCCHHHHHHHH
Confidence 4578999999999999999765
No 342
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=82.28 E-value=0.75 Score=42.26 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|..++|||||++.+.
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~ 62 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLI 62 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999874
No 343
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=82.27 E-value=0.52 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|..++||||||..+
T Consensus 32 ~~I~vvG~~~~GKSSLln~L 51 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENF 51 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 58999999999999999877
No 344
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=81.96 E-value=1.8 Score=36.05 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 193 KPTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 193 ~~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
+.+.+.|+|.+ ++|||+. +++|+..|.+.|.-|
T Consensus 25 ~m~~i~Itgt~t~vGKT~v--t~gL~~~l~~~G~~V 58 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVV--CAALASAARQAGIDV 58 (251)
T ss_dssp SCEEEEEEESSTTSCHHHH--HHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCCCCCcHHHH--HHHHHHHHHHCCCeE
Confidence 34789999998 8999998 788999999998755
No 345
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=81.85 E-value=0.6 Score=40.74 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=17.7
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|..++||||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L 178 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVV 178 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHS
T ss_pred CeeeeeCCCCCCHHHHHHHH
Confidence 35889999999999999875
No 346
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=81.23 E-value=1.1 Score=41.23 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++|+|+-|.|||||.+.++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4899999999999999988765
No 347
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=80.46 E-value=1.7 Score=35.49 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
...+++||=++||||.|-..+.-. ...|..|
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kV 59 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRT--QFAKQHA 59 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH--HHCCCEE
Confidence 789999999999999876554433 3345444
No 348
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=80.09 E-value=0.8 Score=41.81 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
-.++|+|+.++|||||++.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L 253 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTL 253 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999987
No 349
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=79.59 E-value=1 Score=39.55 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++.|..++|||||++++.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~ 183 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRII 183 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHH
Confidence 679999999999999999874
No 350
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=79.25 E-value=0.56 Score=44.03 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..++|+||.|.|||+++|.++
T Consensus 328 ~~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSS
T ss_pred cceEEECCCchHHHHHHHHHH
Confidence 479999999999999999875
No 351
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=78.70 E-value=1.5 Score=39.22 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
...++|+|..+.|||||++.+.
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~ 196 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAML 196 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHh
Confidence 4689999999999999998763
No 352
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=78.65 E-value=1.2 Score=42.45 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|+.++|||||++.+.
T Consensus 70 ~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999998774
No 353
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=78.08 E-value=1.4 Score=41.11 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++.|.|+.|.|||+++.+++
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia 242 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLA 242 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHH
T ss_pred CEEeeeCCCCccHHHHHHHHH
Confidence 899999999999999998764
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.07 E-value=1.8 Score=46.37 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
+.+.|.||.|+|||||+..++..+. +.|-+|
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a--~~G~~v 414 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTC 414 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeE
Confidence 8999999999999999988866543 345444
No 355
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=77.26 E-value=1.2 Score=39.00 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+++.|..++|||||++++.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~ 181 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMI 181 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHH
Confidence 679999999999999999874
No 356
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.84 E-value=1.4 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.|+||.||||||++|+++-
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~ 945 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVID 945 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 357
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=76.32 E-value=2 Score=41.72 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.6
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
...+|.||.|+|||+++..+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~ 395 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATI 395 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 68899999999999988655
No 358
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=76.25 E-value=1.6 Score=39.52 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|..++||||||+.+.
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~ 343 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLK 343 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEcCCCCCHHHHHHHHh
Confidence 478999999999999998873
No 359
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.21 E-value=2.3 Score=44.82 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.+.|+||.|+|||+|..+++...+.
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~~ 60 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQR 60 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999998876553
No 360
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.13 E-value=2.1 Score=45.80 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
+.+.|+||.|+|||+|...++..+.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999988866543
No 361
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=76.10 E-value=1.7 Score=35.52 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=22.3
Q ss_pred cEEEEE-eCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLT-GPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~lt-GpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
++++++ +.-|.||||+ ++.|+..|| .|..|+
T Consensus 28 ~vI~v~s~kGGvGKTT~--a~~LA~~la-~g~~Vl 59 (267)
T 3k9g_A 28 KIITIASIKGGVGKSTS--AIILATLLS-KNNKVL 59 (267)
T ss_dssp EEEEECCSSSSSCHHHH--HHHHHHHHT-TTSCEE
T ss_pred eEEEEEeCCCCchHHHH--HHHHHHHHH-CCCCEE
Confidence 677665 4556899999 455666777 788775
No 362
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=75.13 E-value=1.6 Score=41.00 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.0
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
..+++|+|+.++||||||+.+
T Consensus 38 ~~~VaivG~pnvGKStLiN~L 58 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKL 58 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHhH
Confidence 367899999999999999987
No 363
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=75.07 E-value=1.2 Score=34.81 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
+.++|.+|.|+|||...-.+++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999875554433
No 364
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=75.03 E-value=2.3 Score=38.93 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
+++.|.|+.|.|||||+..++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeeeeecCCCCChHHHHHHHHHhh
Confidence 899999999999999998886543
No 365
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=74.99 E-value=1.8 Score=40.20 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.4
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+..++.|+.|+|||||-
T Consensus 226 ~~~~ffGlSGtGKTtLs 242 (529)
T 1j3b_A 226 DVAVFFGLSGTGKTTLS 242 (529)
T ss_dssp CEEEEEECTTSCHHHHT
T ss_pred cEEEEEccccCChhhHh
Confidence 79999999999999963
No 366
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=73.50 E-value=2.1 Score=38.85 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
+..++.|.|+-.+||||||..+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~ll 88 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHh
Confidence 34789999999999999999873
No 367
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=73.34 E-value=2 Score=39.80 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=16.0
Q ss_pred CcEEEEEeCCCCChHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlL 211 (229)
...+++.|++|+|||||.
T Consensus 213 g~~~~ffGlSGtGKTTLs 230 (524)
T 1ii2_A 213 GDVTVFFGLSGTGKTTLS 230 (524)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEEccCCcchhhhh
Confidence 379999999999999974
No 368
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.29 E-value=3.3 Score=33.00 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=17.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
+.+++.+|.|+|||...-...+.
T Consensus 63 ~~~li~a~TGsGKT~~~~~~~l~ 85 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFLVPVLE 85 (236)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH
Confidence 56899999999999864433333
No 369
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=73.05 E-value=2.7 Score=37.70 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i~ 215 (229)
....++|+|..+.|||||++.+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHh
Confidence 34789999999999999998763
No 370
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=72.49 E-value=2.1 Score=40.23 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=18.4
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
-.++|+|..++|||||+..+
T Consensus 168 lkV~ivG~~n~GKSTLin~L 187 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRL 187 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHH
Confidence 58999999999999999876
No 371
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=72.22 E-value=1.7 Score=39.75 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLI 217 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~ 217 (229)
++++|.|+.|.|||+|+.+|+-.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~ 175 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQ 175 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 88999999999999999988754
No 372
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.61 E-value=2 Score=41.87 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l 216 (229)
.+.+++.||.|+|||.+-|.++-
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCCchHHHHHHHH
Confidence 46799999999999999988763
No 373
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.25 E-value=2.1 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
..+.|+||.||||||.+|++.
T Consensus 907 hGvmlVGp~gsGKTt~~~~L~ 927 (3245)
T 3vkg_A 907 HGVMMVGPSGGGKTTSWEVYL 927 (3245)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999874
No 374
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=71.08 E-value=0.84 Score=41.76 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|+.++||||||+.+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~ 264 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLL 264 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHH
Confidence 479999999999999999774
No 375
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=70.96 E-value=2.4 Score=39.41 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=16.1
Q ss_pred CcEEEEEeCCCCChHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlL 211 (229)
...+++.|+.|+|||||.
T Consensus 241 g~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 241 GDVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEccCCCCHHHHh
Confidence 379999999999999974
No 376
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp}
Probab=70.47 E-value=3.9 Score=37.73 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=50.6
Q ss_pred CCCCeeeEEEeecCCCCCCC-eEEEEeeecCccccccccceeeEeeccEEEEEeecccccCCCcEEEEeEEeccc----C
Q psy13262 12 DDKPITAIAVIEDIQKCPSG-YTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEK----E 86 (229)
Q Consensus 12 ~~~~~t~~~~~~~~~~~p~g-~~~is~t~~~d~~a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~----~ 86 (229)
..+|||++.++....++|+| |.-|...-.. .. -+--|+|..+.++- .+.-|+|+.++.-+ -
T Consensus 411 ~~~~i~~~~~~~~~~~~~~~~~~~~~~dln~----g~--------~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~ 476 (511)
T 2qp2_A 411 NKDCITELKFITVRDKSPEGDWVKIPQDIYI----SP--------NQYLYLCYLPAKYS--AEKAIKDIQLLCSSCGSSM 476 (511)
T ss_dssp CCCEEEEEEEECSTTCCCSTTCEECSSCSCC----ST--------TCCCEEEEEEESCC--TTTSCCEEEEEECC----C
T ss_pred CCCcceEEEEecCCCCCCCCCceEccccccc----CC--------CcEEEEEEecCCCC--CCCCccceEEEecCCCCcC
Confidence 58999999999999999999 9987655332 11 11446777665543 45677998888766 4
Q ss_pred CCCchhhHHH
Q psy13262 87 TPPDGFCLIA 96 (229)
Q Consensus 87 ~~P~~y~~l~ 96 (229)
..|.+|..+.
T Consensus 477 ~~p~~~~~~~ 486 (511)
T 2qp2_A 477 ILPYGYNDVL 486 (511)
T ss_dssp SCCTTCEECB
T ss_pred CCCCcccccc
Confidence 5677877654
No 377
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=70.10 E-value=4 Score=39.64 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++++|+|-.|+|||+.-|.+
T Consensus 171 nQsIiiSGESGAGKTe~tK~i 191 (783)
T 4db1_A 171 NQSILITGESGAGKTVNTKRV 191 (783)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEeCCCCCCCchHHHHH
Confidence 489999999999999999977
No 378
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=69.70 E-value=3.5 Score=38.75 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++.|.|+.|.|||+++.+++
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia 253 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIA 253 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEeeecCCCccHHHHHHHHH
Confidence 899999999999999998764
No 379
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=69.09 E-value=2.6 Score=39.11 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=15.6
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.|++|+|||||.
T Consensus 236 ~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred eEEEEEecCCCCHHHHh
Confidence 69999999999999974
No 380
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=68.53 E-value=3.1 Score=41.20 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHH
Q psy13262 193 KPTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 193 ~~~~~~ltGpN~~GKStlLk~i 214 (229)
..++++|+|+-|.|||||.+.+
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~ 167 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEA 167 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHH
Confidence 4589999999999999998765
No 381
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=68.01 E-value=2.3 Score=38.55 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|+|..++|||||+..+.
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll 54 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLL 54 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999998763
No 382
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=67.77 E-value=3.3 Score=38.06 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
+++.|.|+.|.||||++..++-..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~ 189 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI 189 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHH
Confidence 899999999999999998886653
No 383
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.74 E-value=2.8 Score=35.24 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=15.7
Q ss_pred cEEEEEeCCCCChHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~ 213 (229)
+.+++.+|.|+|||...-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~ 63 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAI 63 (367)
T ss_dssp SEEEEECCSSSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5889999999999976433
No 384
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=67.67 E-value=3 Score=42.22 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~ 215 (229)
.++++|+|+-|.|||||.+.++
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy 171 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVC 171 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHH
Confidence 4899999999999999999875
No 385
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=67.13 E-value=3.7 Score=39.34 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=19.4
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++++|+|-.|+|||..-|.+
T Consensus 94 nQsIiisGESGAGKTe~tK~i 114 (697)
T 1lkx_A 94 NQCVIISGESGAGKTEASKKI 114 (697)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEecCCCCCCchhhHHHH
Confidence 489999999999999999977
No 386
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=66.77 E-value=5.7 Score=38.49 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.6
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++++|+|-.|+|||..-|.+
T Consensus 172 nQsIiisGESGAGKTe~tK~i 192 (770)
T 1w9i_A 172 NQSLLITGESGAGKTENTKKV 192 (770)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEecCCCCcchHHHHHH
Confidence 489999999999999999987
No 387
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=66.39 E-value=5.8 Score=39.80 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=19.4
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.+.|+|+|-.|+|||..-|.+
T Consensus 144 nQsIiiSGESGAGKTestK~i 164 (1052)
T 4anj_A 144 SQSIIVSGESGAGKTENTKFV 164 (1052)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHH
Confidence 389999999999999999977
No 388
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=66.07 E-value=4.6 Score=38.10 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.++|.||.|+|||+..-...+-.++
T Consensus 47 ~~~lv~apTGsGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGIISFLL 72 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 78999999999999987665554443
No 389
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=66.01 E-value=4.1 Score=32.25 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=16.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.+|.|+|||...-...+
T Consensus 58 ~~~l~~apTGsGKT~~~~l~~~ 79 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYLMPGF 79 (228)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5689999999999976443333
No 390
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=65.79 E-value=5.7 Score=38.61 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++++|+|-.|+|||..-|.+
T Consensus 156 nQsIiisGESGAGKTe~tK~i 176 (795)
T 1w7j_A 156 NQSIIVSGESGAGKTVSAKYA 176 (795)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHH
Confidence 489999999999999999987
No 391
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=65.78 E-value=5.8 Score=36.67 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
..++.+|.-|.||||+ ++.|+..+|+.|..|+
T Consensus 328 ~~~~~~~~~g~Gktt~--a~~lA~~l~~~g~~vl 359 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTM--AAAIAVRLADMGFDVH 359 (589)
T ss_dssp EEEEEECSTTSSHHHH--HHHHHHHHHHTTCCEE
T ss_pred eEEEEecCCCCChhhH--HHHHHHHHHHCCCcEE
Confidence 5677889999999998 5566677888898765
No 392
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=65.56 E-value=6.4 Score=39.32 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=22.2
Q ss_pred CcEEEEEeCCCCChHHHHHHH-HHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL-GLITILA 221 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i-~l~~~ma 221 (229)
.++|+|+|-.|+|||..-|.+ --++.++
T Consensus 172 ~QsIiisGESGAGKTe~~K~i~~yla~~~ 200 (1010)
T 1g8x_A 172 NQSLLITGESGAGKTENTKKVIQYLASVA 200 (1010)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHHHHHhc
Confidence 489999999999999999987 3333443
No 393
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=64.97 E-value=1.2 Score=40.15 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
...++|.|+.++|||||++.+
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L 54 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNAL 54 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 478999999999999998765
No 394
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=64.84 E-value=4.4 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.2
Q ss_pred cEEEEEeCCCCChHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~ 213 (229)
+..+|.+|.|+|||...-.
T Consensus 129 ~~~ll~~~tGsGKT~~~~~ 147 (282)
T 1rif_A 129 RRRILNLPTSAGRSLIQAL 147 (282)
T ss_dssp SEEEECCCTTSCHHHHHHH
T ss_pred CCeEEEcCCCCCcHHHHHH
Confidence 3567799999999998733
No 395
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=64.06 E-value=3.1 Score=37.91 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++.|.|+.|.|||||+.+++
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia 172 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIA 172 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHH
Confidence 889999999999999997764
No 396
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=63.46 E-value=4.7 Score=39.13 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++++|+|-.|+|||..-|.+
T Consensus 140 nQsIiiSGESGAGKTe~tK~i 160 (784)
T 2v26_A 140 SQSIIVSGESGAGKTENTKFV 160 (784)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEcCCCCCCceehHHHH
Confidence 489999999999999999977
No 397
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=63.22 E-value=2.8 Score=38.25 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
+++.|.|+.|.||||++.+++
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia 168 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIA 168 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHH
Confidence 889999999999999997764
No 398
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=62.99 E-value=4.8 Score=31.10 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=14.6
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 56899999999999753
No 399
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=62.95 E-value=4.2 Score=37.53 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHH-HHHHH
Q psy13262 195 TVLLLTGPNMGGKSTV-MRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl-Lk~i~ 215 (229)
++++|.|+.|.||||+ |.+|+
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~ 197 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTII 197 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHH
Confidence 8999999999999999 66664
No 400
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=61.90 E-value=4.7 Score=37.69 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|.-+.|||||+..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~L 197 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRI 197 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 57999999999999999876
No 401
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=61.75 E-value=6.8 Score=31.67 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.5
Q ss_pred cEEEEEeCCCCChHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~ 213 (229)
+.++|.||.|+|||...-.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~ 127 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMA 127 (237)
T ss_dssp SEEEEEESSSTTHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 4589999999999987543
No 402
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=61.43 E-value=6.2 Score=38.61 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++++|+|-.|+|||..-|.+
T Consensus 169 nQsIiiSGESGAGKTe~tK~i 189 (837)
T 1kk8_A 169 NQSCLITGESGAGKTENTKKV 189 (837)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEeCCCCCCchhhHHHH
Confidence 389999999999999999987
No 403
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=61.26 E-value=3.3 Score=38.76 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
++.+|.|+-|.|||+++..++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia 248 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLA 248 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHH
Confidence 899999999999999998764
No 404
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=61.19 E-value=5.4 Score=30.78 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=14.0
Q ss_pred cEEEEEeCCCCChHHH
Q psy13262 195 TVLLLTGPNMGGKSTV 210 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl 210 (229)
+.+++.+|.|+|||..
T Consensus 41 ~~~lv~apTGsGKT~~ 56 (206)
T 1vec_A 41 RDILARAKNGTGKSGA 56 (206)
T ss_dssp CCEEEECCSSSTTHHH
T ss_pred CCEEEECCCCCchHHH
Confidence 5689999999999964
No 405
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=60.76 E-value=7 Score=38.98 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.6
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++|+|+|-.|+|||..-|.+
T Consensus 146 ~QsIiisGESGAGKTe~~K~i 166 (995)
T 2ycu_A 146 DQSILCTGESGAGKTENTKKV 166 (995)
T ss_dssp CEEEEEECBTTSSHHHHHHHH
T ss_pred CcEEEecCCCCCCchhhHHHH
Confidence 489999999999999999987
No 406
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=60.60 E-value=4.7 Score=37.12 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHH-HHHHH
Q psy13262 195 TVLLLTGPNMGGKSTV-MRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl-Lk~i~ 215 (229)
++++|.|+.|.|||++ |.+|+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~ 184 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTII 184 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHH
Confidence 8999999999999999 66664
No 407
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=60.20 E-value=8.2 Score=31.25 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILA 221 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma 221 (229)
+.+++.+|.|+|||...-...+..++.
T Consensus 81 ~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 568999999999997654444443433
No 408
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=60.04 E-value=7.8 Score=33.80 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=22.9
Q ss_pred CcEEEEE-eCCCCChHHHHHHHHHHHHHH------hcCCCcc
Q psy13262 194 PTVLLLT-GPNMGGKSTVMRQLGLITILA------QMENPQL 228 (229)
Q Consensus 194 ~~~~~lt-GpN~~GKStlLk~i~l~~~ma------~~G~~v~ 228 (229)
.++++++ |.-|.||||+ ++.|+..|| +.|..|+
T Consensus 108 ~~vIav~s~KGGvGKTT~--a~nLA~~La~~~~~~~~g~rVl 147 (398)
T 3ez2_A 108 AYVIFISNLKGGVSKTVS--TVSLAHAMRAHPHLLMEDLRIL 147 (398)
T ss_dssp CEEEEECCSSSSSSHHHH--HHHHHHHHHHCTTTGGGCCCEE
T ss_pred CeEEEEEeCCCCccHHHH--HHHHHHHHHhcchhhcCCCeEE
Confidence 3566665 6677899998 455566677 4687775
No 409
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.03 E-value=7 Score=39.31 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++|+|+|-.|+|||..-|.+
T Consensus 156 ~QsIiisGESGAGKTe~~K~i 176 (1080)
T 2dfs_A 156 NQSIIVSGESGAGKTVSAKYA 176 (1080)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEcCCCCCCccchHHHH
Confidence 489999999999999999977
No 410
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=59.34 E-value=6 Score=32.38 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=16.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.+|.|+|||...-...+
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~~l 113 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIPAV 113 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHHHH
Confidence 5688999999999986543333
No 411
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=59.25 E-value=6.7 Score=37.11 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.++|.||.|+|||+..-...+-.++
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~~ 65 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRIL 65 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHH
Confidence 78999999999999876555444444
No 412
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.97 E-value=4.4 Score=44.57 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.1
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
+.++++||.|+|||++.+.+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~ 1287 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNA 1287 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 79999999999999999654
No 413
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=58.65 E-value=8.5 Score=33.03 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=18.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.+++.+|.|+|||...-...+..++
T Consensus 53 ~~~lv~a~TGsGKT~~~~~~~l~~~~ 78 (417)
T 2i4i_A 53 RDLMACAQTGSGKTAAFLLPILSQIY 78 (417)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999754444444443
No 414
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=58.62 E-value=6.3 Score=30.91 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=14.1
Q ss_pred cEEEEEeCCCCChHHH
Q psy13262 195 TVLLLTGPNMGGKSTV 210 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl 210 (229)
+.+++.+|.|+|||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 5689999999999965
No 415
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=58.61 E-value=5.3 Score=36.80 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHH-HHHHH
Q psy13262 195 TVLLLTGPNMGGKSTV-MRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl-Lk~i~ 215 (229)
+++.|.|+.|.|||++ |.+|+
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~ 184 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTII 184 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHH
Confidence 8999999999999999 76664
No 416
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=58.26 E-value=11 Score=34.89 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.6
Q ss_pred CcEEEEEeCCC----CChHHHHHHHHHHHHHHhcCCCcc
Q psy13262 194 PTVLLLTGPNM----GGKSTVMRQLGLITILAQMENPQL 228 (229)
Q Consensus 194 ~~~~~ltGpN~----~GKStlLk~i~l~~~ma~~G~~v~ 228 (229)
.+.+++|..+. -||||. +++|+..|||.|--|+
T Consensus 57 ~K~IlVTS~~PTP~GEGKSTt--sinLA~alA~~GkkVL 93 (557)
T 3pzx_A 57 GKLILVTAITPTPAGEGKTTT--SVGLTDALARLGKRVM 93 (557)
T ss_dssp CEEEEEEESCCCTTCCCHHHH--HHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCCCCCchhH--HHHHHHHHHHcCCeEE
Confidence 48899999886 899998 7899999999997665
No 417
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=57.92 E-value=4.6 Score=37.19 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHH-HHHHH
Q psy13262 195 TVLLLTGPNMGGKSTV-MRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl-Lk~i~ 215 (229)
++++|.|+.|.|||++ |.+|+
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~ 185 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTIL 185 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHH
T ss_pred CEEEEecCCCCCccHHHHHHHH
Confidence 8999999999999999 76764
No 418
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=57.41 E-value=6.3 Score=35.82 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
.++.|.|+-.+|||+||..+
T Consensus 68 ~vvsv~G~~~~gks~l~N~l 87 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFM 87 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHH
Confidence 67889999999999999976
No 419
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.29 E-value=10 Score=30.33 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.+++.+|.|+|||...-...+..+.
T Consensus 67 ~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 67889999999999875444444443
No 420
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=57.22 E-value=10 Score=32.23 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
.+++|||-| ||||.=.+++ .+|.++|..
T Consensus 109 ~~IaVTGTn--GKTTTt~ll~--~iL~~~g~~ 136 (326)
T 3eag_A 109 WVLGVAGTH--GKTTTASMLA--WVLEYAGLA 136 (326)
T ss_dssp EEEEEESSS--CHHHHHHHHH--HHHHHTTCC
T ss_pred CEEEEECCC--CHHHHHHHHH--HHHHHcCCC
Confidence 799999986 6999966554 456667754
No 421
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=56.14 E-value=5.3 Score=36.01 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.2
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..+++.|.-+.|||||+..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~L 63 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNI 63 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHH
Confidence 57999999999999999876
No 422
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=55.35 E-value=5.5 Score=37.86 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQME 224 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G 224 (229)
+.+++.||.|+|||+.. .+.++..+..-|
T Consensus 242 ~dvlv~apTGSGKTl~~-ll~il~~l~~~~ 270 (673)
T 2wv9_A 242 QLTVLDLHPGAGKTRRI-LPQIIKDAIQKR 270 (673)
T ss_dssp CEEEECCCTTTTTTTTH-HHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCHHHHH-HHHHHHHHHhCC
Confidence 88999999999999975 333333333334
No 423
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=55.27 E-value=10 Score=30.39 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=16.5
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.+++.+|.|+|||...-...+
T Consensus 61 ~~~l~~a~TGsGKT~~~~~~~l 82 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLIPII 82 (253)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5689999999999976533333
No 424
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=55.16 E-value=9.3 Score=36.34 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=14.4
Q ss_pred cEEEEEeCCCCChHH
Q psy13262 195 TVLLLTGPNMGGKST 209 (229)
Q Consensus 195 ~~~~ltGpN~~GKSt 209 (229)
+.+++.||.|+|||+
T Consensus 156 k~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTY 170 (677)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred CEEEEEcCCCCCHHH
Confidence 789999999999998
No 425
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=54.84 E-value=12 Score=33.46 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
..++|||-|| |||.=.+++ .+|.+.|..
T Consensus 113 ~~IaVTGTnG--KTTTt~ml~--~iL~~~g~~ 140 (451)
T 3lk7_A 113 QLIGITGSNG--KTTTTTMIA--EVLNAGGQR 140 (451)
T ss_dssp EEEEEECSSC--HHHHHHHHH--HHHHHTTCC
T ss_pred CEEEEECCCC--HHHHHHHHH--HHHHhcCCC
Confidence 7999999876 999866654 455666653
No 426
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=54.09 E-value=6.9 Score=33.19 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=15.1
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
+.++|+|| ||+|+++.+
T Consensus 106 r~ivl~GP---gK~tl~~~L 122 (295)
T 1kjw_A 106 RPIIILGP---TKDRANDDL 122 (295)
T ss_dssp CCEEEEST---THHHHHHHH
T ss_pred CEEEEECC---CHHHHHHHH
Confidence 88999999 799999864
No 427
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=53.81 E-value=7 Score=36.01 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.9
Q ss_pred cEEEEEeCCCCChHHH-HHHH
Q psy13262 195 TVLLLTGPNMGGKSTV-MRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl-Lk~i 214 (229)
++++|.|+.|.|||++ |.+|
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I 183 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAI 183 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHH
Confidence 8999999999999999 5665
No 428
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=53.35 E-value=9 Score=31.60 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=14.6
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.++|.+|.|+|||...
T Consensus 32 ~~~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAY 48 (337)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEEcCCCCcHHHHH
Confidence 57899999999999753
No 429
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=52.44 E-value=12 Score=29.80 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.4
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 55899999999999753
No 430
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=52.42 E-value=6.4 Score=34.47 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=16.0
Q ss_pred cEEEEE-eCCCCChHHHHHHHHHHHHHH------hcCCCcc
Q psy13262 195 TVLLLT-GPNMGGKSTVMRQLGLITILA------QMENPQL 228 (229)
Q Consensus 195 ~~~~lt-GpN~~GKStlLk~i~l~~~ma------~~G~~v~ 228 (229)
++++++ |.-|.||||+ ++.|+..|| +.|..|+
T Consensus 112 ~vIav~s~KGGvGKTT~--a~nLA~~LA~~g~~~~~g~rVl 150 (403)
T 3ez9_A 112 YVIFVVNLKGGVSKTVS--TVTLAHALRVHQDLLRHDLRIL 150 (403)
T ss_dssp EEEEECCC--------C--HHHHHHHHHSCGGGGGGCCCEE
T ss_pred eEEEEEcCCCCchHHHH--HHHHHHHHHhcchhhcCCCeEE
Confidence 566665 6677799998 456666777 6788775
No 431
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=52.17 E-value=7.3 Score=39.45 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.5
Q ss_pred CcEEEEEeCCCCChHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i 214 (229)
.++|+|+|-.|+|||..-|.+
T Consensus 169 ~Q~i~isGeSGaGKTe~~k~~ 189 (1184)
T 1i84_S 169 DQSILCTGESGAGKTENTKKV 189 (1184)
T ss_dssp CEEEECCCSTTSSTTHHHHHH
T ss_pred CcEEEEecCCCCCccHHHHHH
Confidence 489999999999999999987
No 432
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=50.79 E-value=9.6 Score=36.91 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
..++|+|.-.+||||+|..+
T Consensus 52 p~I~vvG~~saGKSSllnaL 71 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENF 71 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 58999999999999999987
No 433
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=50.74 E-value=11 Score=29.32 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.2
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 52 ~~~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVF 68 (220)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCchhhhh
Confidence 45899999999999654
No 434
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=49.68 E-value=6.4 Score=37.11 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
+.++|.||.|+|||+..-...+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~ 64 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVRE 64 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHH
Confidence 789999999999999765554433
No 435
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=49.55 E-value=13 Score=33.18 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.2
Q ss_pred cEEEEEeCCCCChHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~ 213 (229)
+..+|.||.|+|||...=.
T Consensus 129 ~~~ll~~~tGsGKT~~~~~ 147 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQAL 147 (510)
T ss_dssp SEEEEECCSTTTHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 5789999999999998733
No 436
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=47.53 E-value=18 Score=33.07 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQME 224 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G 224 (229)
+.++|.+|.|+|||.. .+.++..+.+.|
T Consensus 199 ~~~ll~~~TGsGKT~~--~~~~~~~l~~~~ 226 (590)
T 3h1t_A 199 KRSLITMATGTGKTVV--AFQISWKLWSAR 226 (590)
T ss_dssp SEEEEEECTTSCHHHH--HHHHHHHHHHTT
T ss_pred CceEEEecCCCChHHH--HHHHHHHHHhcc
Confidence 5688899999999988 455555444444
No 437
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=47.52 E-value=13 Score=32.84 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=14.1
Q ss_pred cEEEEEeCCCCChHHH
Q psy13262 195 TVLLLTGPNMGGKSTV 210 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl 210 (229)
...+|.+|.|+|||..
T Consensus 109 ~~~ll~~~TGsGKT~~ 124 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHV 124 (472)
T ss_dssp TEEEEECCTTSCHHHH
T ss_pred CCEEEEeCCCCCHHHH
Confidence 4689999999999976
No 438
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.23 E-value=9.2 Score=32.66 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.2
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 59 ~~~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAF 75 (400)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCcHHHHHH
Confidence 45899999999999654
No 439
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=46.93 E-value=18 Score=33.06 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
..++|||-| ||||.=.+++ .+|.++|..
T Consensus 123 ~vIaVTGTn--GKTTTt~li~--~iL~~~G~~ 150 (524)
T 3hn7_A 123 HVIAVAGTH--GKTTTTTMLA--WILHYAGID 150 (524)
T ss_dssp EEEEEECSS--CHHHHHHHHH--HHHHHTTCC
T ss_pred cEEEEECCC--CHHHHHHHHH--HHHHHcCCC
Confidence 799999986 5999865553 456667753
No 440
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=46.30 E-value=14 Score=29.16 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.5
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56899999999999754
No 441
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=46.14 E-value=14 Score=31.21 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=15.1
Q ss_pred cEEEEEeCCCCChHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMR 212 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk 212 (229)
+.+++.+|.|+|||...-
T Consensus 45 ~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 678999999999997543
No 442
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=45.27 E-value=15 Score=31.56 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=18.4
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
-.+++=|.-|+||||.+|.+
T Consensus 87 vlIvfEG~DgAGKgt~Ik~L 106 (304)
T 3czq_A 87 VMAVFEGRDAAGKGGAIHAT 106 (304)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHH
Confidence 68889999999999999976
No 443
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=44.23 E-value=10 Score=29.74 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.3
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 42 ~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 56889999999999753
No 444
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=43.80 E-value=13 Score=31.71 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.9
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 65 ~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCchHHHHH
Confidence 67899999999999764
No 445
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=43.58 E-value=23 Score=32.06 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMEN 225 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~ 225 (229)
..++|||-| ||||.=.+++ .+|.++|.
T Consensus 123 ~~IaVTGTn--GKTTTt~ml~--~iL~~~g~ 149 (494)
T 4hv4_A 123 HGIAVAGTH--GKTTTTAMLS--SIYAEAGL 149 (494)
T ss_dssp EEEEEECSS--SHHHHHHHHH--HHHHHTTC
T ss_pred CEEEEecCC--ChHHHHHHHH--HHHHhcCC
Confidence 689999985 6999865553 45677776
No 446
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=43.45 E-value=28 Score=30.48 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++.|||-| ||||.-.+++ .+|.++|..+
T Consensus 50 ~vI~VTGTn--GKtTT~~~l~--~iL~~~G~~~ 78 (422)
T 1w78_A 50 FVFTVAGTN--GKGTTCRTLE--SILMAAGYKV 78 (422)
T ss_dssp EEEEEECSS--CHHHHHHHHH--HHHHHTTCCE
T ss_pred cEEEEeCCc--ChHHHHHHHH--HHHHHCCCCE
Confidence 799999986 5999866553 4556666543
No 447
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=43.40 E-value=8.3 Score=30.78 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=13.9
Q ss_pred cEEEEEeCCCCChHHH
Q psy13262 195 TVLLLTGPNMGGKSTV 210 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl 210 (229)
+.+++.+|.|+|||..
T Consensus 68 ~~~li~apTGsGKT~~ 83 (237)
T 3bor_A 68 YDVIAQAQSGTGKTAT 83 (237)
T ss_dssp CCEEECCCSSHHHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 4688999999999965
No 448
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=42.60 E-value=21 Score=31.28 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILA 221 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma 221 (229)
+.+++.+|.|+|||...=...+..++.
T Consensus 94 ~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 94 RDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 678999999999998654444444444
No 449
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=42.57 E-value=15 Score=37.60 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.++|.|..+.|||||+..+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt 317 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAIT 317 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 579999999999999999874
No 450
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=42.42 E-value=8.7 Score=32.88 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=14.5
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||+..
T Consensus 78 ~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATF 94 (414)
T ss_dssp CCEEECCCSCSSSHHHH
T ss_pred CCEEEECCCCCcccHHH
Confidence 45899999999999764
No 451
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=41.64 E-value=15 Score=30.75 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.8
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 132 ~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCccHHH
Confidence 67899999999999763
No 452
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=41.34 E-value=21 Score=31.57 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=15.1
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 132 ~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CEEEEECCSSSSHHHHH
T ss_pred CcEEEEcCCCCchhHHH
Confidence 78999999999999763
No 453
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=41.31 E-value=27 Score=31.46 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
+.+++.+|.|+|||...-...+..+
T Consensus 112 ~~~lv~apTGsGKTl~~~lpil~~l 136 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAFLIPIFQHL 136 (563)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCccHHHHHHHHHHH
Confidence 7899999999999975444333333
No 454
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=40.82 E-value=14 Score=31.88 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.0
Q ss_pred cEEEEEeCCCCChHHH
Q psy13262 195 TVLLLTGPNMGGKSTV 210 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl 210 (229)
+.+++.+|.|+|||..
T Consensus 37 ~~~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTF 52 (414)
T ss_dssp CCEECCSCSSSSHHHH
T ss_pred CCEEEEeCCCCCHHHH
Confidence 5688999999999983
No 455
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.96 E-value=10 Score=42.39 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=17.0
Q ss_pred cEEEEEeCCCCChHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~ 213 (229)
+-+.|+||.|+|||++++.
T Consensus 1305 ~pvLL~GptGtGKT~li~~ 1323 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTS 1323 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 7899999999999998754
No 456
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=38.20 E-value=21 Score=32.91 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
|.++|.|.-++|||||.-.+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHH
Confidence 899999999999999987663
No 457
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=37.60 E-value=38 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=26.1
Q ss_pred CcEEEEEeCC----CCChHHHHHHHHHHHHHHhcCCC
Q psy13262 194 PTVLLLTGPN----MGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 194 ~~~~~ltGpN----~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
.+.+++|+-| |-||||. +|||..-|.+.|--
T Consensus 43 GklIlVTaItPTPaGEGKtTt--tiGL~~aL~~lgk~ 77 (543)
T 3do6_A 43 GKLILVTAVTPTPAGEGKTTT--SIGLSMSLNRIGKK 77 (543)
T ss_dssp CEEEEEEESSCCTTCCCHHHH--HHHHHHHHHHTTCC
T ss_pred CeEEEEEecCCCCCCCCccch--HHHHHHHHHhcCCe
Confidence 3788888855 7999998 89999999998854
No 458
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=37.55 E-value=32 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++.|||-| ||||.-.+++ .+|.+.|..+
T Consensus 40 ~vI~VtGTn--GKtTT~~~l~--~iL~~~G~~v 68 (428)
T 1jbw_A 40 RYIHVTGTN--GKGSAANAIA--HVLEASGLTV 68 (428)
T ss_dssp CEEEEECSS--CHHHHHHHHH--HHHHHTTCCE
T ss_pred cEEEEECCC--ChHHHHHHHH--HHHHHCCCCE
Confidence 699999986 5999866653 3555666544
No 459
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=37.00 E-value=20 Score=31.25 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=18.4
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..+.|+|+.|.||+++-+.+--
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEecCCCcCHHHHHHHHHH
Confidence 4569999999999999887743
No 460
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=36.81 E-value=19 Score=34.15 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=14.9
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||+.+
T Consensus 233 ~~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEEECCTTSCTTTHH
T ss_pred CeEEEEeCCchhHHHHH
Confidence 78999999999999653
No 461
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=35.36 E-value=17 Score=29.43 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.8
Q ss_pred EeCCCCChHHHHHHHH
Q psy13262 200 TGPNMGGKSTVMRQLG 215 (229)
Q Consensus 200 tGpN~~GKStlLk~i~ 215 (229)
.|+-++|||||++.+.
T Consensus 34 ~~~~~vGKSsLi~~l~ 49 (255)
T 3c5h_A 34 KGQCGIGKSCLCNRFV 49 (255)
T ss_dssp TTTCCCSHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHH
Confidence 6788899999999874
No 462
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=35.30 E-value=38 Score=30.83 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=18.3
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITI 219 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ 219 (229)
+.+++.+|.|+|||...-...+..+
T Consensus 61 ~dvlv~apTGsGKTl~~~lpil~~l 85 (579)
T 3sqw_A 61 HDVIARAKTGTGKTFAFLIPIFQHL 85 (579)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHHHH
Confidence 7899999999999986444443333
No 463
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=35.20 E-value=25 Score=30.01 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=14.3
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 75 ~~~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATF 91 (410)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCCchHHH
Confidence 56899999999999654
No 464
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=35.11 E-value=23 Score=30.70 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|+|+.|+||+++-+.+--
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHH
T ss_pred hhheEEeCCCchHHHHHHHHHH
Confidence 5688999999999999887743
No 465
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=35.10 E-value=25 Score=29.56 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.2
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 46 ~~~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVF 62 (391)
T ss_dssp CCEEEECSSCSSHHHHH
T ss_pred CcEEEECCCCCcHHHHH
Confidence 56899999999999653
No 466
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=34.70 E-value=28 Score=33.32 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.9
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
+.++|.+|.|+|||...-..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~ 283 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILI 283 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHH
Confidence 56899999999999764333
No 467
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=34.50 E-value=37 Score=30.55 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++.|||-| ||||.-.++ ..+|.+.|.++
T Consensus 109 ~vI~VTGTn--GKTTT~~ml--~~iL~~~g~~~ 137 (498)
T 1e8c_A 109 RLVGVTGTN--GKTTTTQLL--AQWSQLLGEIS 137 (498)
T ss_dssp EEEEEESSS--CHHHHHHHH--HHHHHHTTCCE
T ss_pred eEEEEeCCc--ChHHHHHHH--HHHHHhCCCCE
Confidence 699999986 599986654 34566677653
No 468
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=34.42 E-value=37 Score=30.98 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++.|||-| ||||.-.++ ..+|.+.|.++
T Consensus 147 ~vI~VTGTn--GKTTT~~ml--~~iL~~~G~~~ 175 (535)
T 2wtz_A 147 TVIGITGTS--GKTTTTYLV--EAGLRAAGRVA 175 (535)
T ss_dssp EEEEEESSS--CHHHHHHHH--HHHHHHTTCCE
T ss_pred eEEEeeCCC--ChHHHHHHH--HHHHHHCCCCE
Confidence 799999986 599986554 34566667653
No 469
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=34.06 E-value=22 Score=30.03 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.5
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
+-+||+|| ||+|+.+.+
T Consensus 101 RpvVl~Gp---~K~tl~~~L 117 (292)
T 3tvt_A 101 RPVIILGP---LKDRINDDL 117 (292)
T ss_dssp CCEEEEST---THHHHHHHH
T ss_pred CeEEEeCC---CHHHHHHHH
Confidence 88999999 599998854
No 470
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=33.68 E-value=10 Score=32.09 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.1
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||...
T Consensus 59 ~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 45789999999999753
No 471
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=33.10 E-value=37 Score=30.12 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v 227 (229)
.++.|||-| ||||.-.+++ .+|.++|..+
T Consensus 53 ~vI~VTGTn--GKtTT~~~l~--~iL~~~G~~v 81 (442)
T 1o5z_A 53 KTIHIGGTN--GKGSVANMVS--NILVSQGYRV 81 (442)
T ss_dssp EEEEEECSS--SHHHHHHHHH--HHHHHHTCCE
T ss_pred CEEEEECCc--CHHHHHHHHH--HHHHHCCCCE
Confidence 799999986 5999866653 3445555543
No 472
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=32.69 E-value=22 Score=33.28 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=15.4
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.+++.+|.|+|||+..
T Consensus 187 ~dvlv~a~TGSGKT~~~ 203 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRI 203 (618)
T ss_dssp CEEEECCCTTSSTTTTH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 89999999999999863
No 473
>1lj2_C EIF4GI, eukaryotic protein synthesis initiation factor; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A}
Probab=32.40 E-value=9.5 Score=20.67 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=11.5
Q ss_pred cEEEEEeCCCCChH
Q psy13262 195 TVLLLTGPNMGGKS 208 (229)
Q Consensus 195 ~~~~ltGpN~~GKS 208 (229)
..+-|.|||-|||-
T Consensus 7 K~irirdp~qg~Kd 20 (28)
T 1lj2_C 7 KTIRIRDPNQGGKD 20 (28)
T ss_dssp CCCEEECGGGTSCC
T ss_pred CceeeeCccccchh
Confidence 45678999999984
No 474
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=32.00 E-value=39 Score=32.77 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.6
Q ss_pred cEEEEEeC-CCCChHHHHHHHHHHHHHHhc
Q psy13262 195 TVLLLTGP-NMGGKSTVMRQLGLITILAQM 223 (229)
Q Consensus 195 ~~~~ltGp-N~~GKStlLk~i~l~~~ma~~ 223 (229)
+.+.|+|. .++|||++ +.||+.++.+-
T Consensus 35 ~~l~I~gt~s~vGKT~v--t~gL~r~l~~~ 62 (831)
T 4a0g_A 35 PTYLIWSANTSLGKTLV--STGIAASFLLQ 62 (831)
T ss_dssp CEEEEEESSSSSCHHHH--HHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHH--HHHHHHHHHhc
Confidence 78999999 57899998 78899999887
No 475
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=31.82 E-value=47 Score=29.68 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
.++.|||-| ||||.-.+++ .+|.++|..
T Consensus 115 ~vI~VTGTn--GKTTTt~ml~--~iL~~~G~~ 142 (469)
T 1j6u_A 115 EEFAVTGTD--GKTTTTAMVA--HVLKHLRKS 142 (469)
T ss_dssp CEEEEECSS--SHHHHHHHHH--HHHHHTTCC
T ss_pred CEEEEECCC--CHHHHHHHHH--HHHHHcCCC
Confidence 699999986 5999866553 455666653
No 476
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=31.79 E-value=25 Score=31.63 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=14.5
Q ss_pred cEEEEEeCCCCChHHH
Q psy13262 195 TVLLLTGPNMGGKSTV 210 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl 210 (229)
+.++|.+|.|+|||..
T Consensus 159 ~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAA 174 (508)
T ss_dssp CCEEEECCSSTTSHHH
T ss_pred CCEEEECCCCccHHHH
Confidence 7899999999999975
No 477
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=31.16 E-value=44 Score=28.57 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262 194 PTVLLLTGPNMGGKSTVMRQLGLIT 218 (229)
Q Consensus 194 ~~~~~ltGpN~~GKStlLk~i~l~~ 218 (229)
..+++.+|.-|.||||+--.+|...
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHH
Confidence 3677888999999999977776543
No 478
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=31.00 E-value=33 Score=32.64 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=17.8
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
.+.+|||+=|-|||+++-.+
T Consensus 193 ~~~vlta~RGRGKSa~lG~~ 212 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQL 212 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEecCCCCCHHHHHHHH
Confidence 57899999999999998765
No 479
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=30.49 E-value=39 Score=31.28 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.1
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
+.++|.+|.|+|||...-...+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 6789999999999986544433
No 480
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=30.43 E-value=48 Score=29.20 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
.++.|||-| ||||.-.++ ..+|.+.|..
T Consensus 105 ~vI~VTGTn--GKTTT~~ml--~~iL~~~g~~ 132 (439)
T 2x5o_A 105 PIVAITGSN--GKSTVTTLV--GEMAKAAGVN 132 (439)
T ss_dssp CEEEEECSS--SHHHHHHHH--HHHHHHTTCC
T ss_pred CEEEEECCC--CHHHHHHHH--HHHHHhcCCC
Confidence 799999986 599975544 3456666654
No 481
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=29.95 E-value=49 Score=29.80 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~ 226 (229)
.++.|||=| ||||.-.+++ .+|.++|..
T Consensus 65 ~vI~VtGTN--GKtST~~~l~--~iL~~~G~~ 92 (487)
T 2vos_A 65 PSIHIAGTN--GKTSVARMVD--ALVTALHRR 92 (487)
T ss_dssp CEEEEECSS--SHHHHHHHHH--HHHHHTTCC
T ss_pred eEEEEeCCC--CcHHHHHHHH--HHHHHcCCC
Confidence 699999987 6999866653 345556643
No 482
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=29.41 E-value=36 Score=33.75 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=14.6
Q ss_pred cEEEEEeCCCCChHHH
Q psy13262 195 TVLLLTGPNMGGKSTV 210 (229)
Q Consensus 195 ~~~~ltGpN~~GKStl 210 (229)
+.+++.+|.|+|||+.
T Consensus 55 ~~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVV 70 (997)
T ss_dssp CEEEEECCTTSCSHHH
T ss_pred CCEEEEECCCCcHHHH
Confidence 7899999999999974
No 483
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=28.47 E-value=46 Score=30.08 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=22.9
Q ss_pred CCCeeeEEEeecCCCCCCCeEE--EEeeec
Q psy13262 13 DKPITAIAVIEDIQKCPSGYTV--ISKTVD 40 (229)
Q Consensus 13 ~~~~t~~~~~~~~~~~p~g~~~--is~t~~ 40 (229)
..||--+.+.++...||+|++| +|.+.+
T Consensus 358 ~~~iy~~~~s~~~~~cp~G~~i~~~st~~e 387 (475)
T 3p1w_A 358 KSDIYINLVSFQHGVTLKGKYIAIVSATVE 387 (475)
T ss_dssp SSCEEEEEEEGGGTSSCTTCEEEEEEEECC
T ss_pred CCCEEEEEECCCcCcCCCCcEEEEEEeecC
Confidence 5678888889999999999998 666554
No 484
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=28.14 E-value=38 Score=33.63 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.6
Q ss_pred cEEEEEeCCCCChHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVM 211 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlL 211 (229)
+.++|.+|.|+|||+..
T Consensus 102 ~~vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVA 118 (1010)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCChHHHH
Confidence 68999999999999975
No 485
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.25 E-value=32 Score=34.54 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.0
Q ss_pred cEEEEEeCCCCChHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~ 213 (229)
+.+++.||.|+|||+..-.
T Consensus 200 ~dvLV~ApTGSGKTlva~l 218 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEY 218 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHH
Confidence 7899999999999986433
No 486
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=27.17 E-value=34 Score=31.73 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.2
Q ss_pred cEEEEEeCCCCChHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQ 213 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~ 213 (229)
+-+++..|.|+|||...-.
T Consensus 60 ~d~lv~~pTGsGKTl~~~l 78 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQL 78 (591)
T ss_dssp CCEEEECCTTSCTTHHHHH
T ss_pred CCEEEEECCCChHHHHHHH
Confidence 5688999999999975433
No 487
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp}
Probab=26.73 E-value=17 Score=33.35 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=27.6
Q ss_pred HhhhhhcCCC----CCCeeeEEEeecC----CCCCCCeEEEEee
Q psy13262 3 KQVFQSFIPD----DKPITAIAVIEDI----QKCPSGYTVISKT 38 (229)
Q Consensus 3 ~~~~~~~~~~----~~~~t~~~~~~~~----~~~p~g~~~is~t 38 (229)
+.||--|-+. +.|||+|-++.+. -..|.||.-|+..
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~ 488 (511)
T 2qp2_A 445 QYLYLCYLPAKYSAEKAIKDIQLLCSSCGSSMILPYGYNDVLDE 488 (511)
T ss_dssp CCCEEEEEEESCCTTTSCCEEEEEECC----CSCCTTCEECBCT
T ss_pred cEEEEEEecCCCCCCCCccceEEEecCCCCcCCCCCcccccccc
Confidence 4556556542 6799999999999 6789999887654
No 488
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=23.80 E-value=50 Score=31.83 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=16.8
Q ss_pred cEEEEEeCCCCChHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGL 216 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l 216 (229)
..++|.||.|+|||...-...+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999986544333
No 489
>1rh7_A Relmbeta, resistin-like beta; hormone, glucose uptake, resistin/FIZZ family, structural genomics, PSI, protein structure initiative; HET: P6G; 3.11A {Mus musculus} SCOP: g.77.1.1
Probab=22.96 E-value=58 Score=22.04 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=21.0
Q ss_pred HhhhhhcCCCCCCeeeEEEee--cCCCCCCCeEEEEee
Q psy13262 3 KQVFQSFIPDDKPITAIAVIE--DIQKCPSGYTVISKT 38 (229)
Q Consensus 3 ~~~~~~~~~~~~~~t~~~~~~--~~~~~p~g~~~is~t 38 (229)
||+++++-.. -+.-.-+.+ ....||.||.+.+.+
T Consensus 12 ke~~~~l~~k--~L~C~sv~s~g~lasCP~G~~vtgCa 47 (81)
T 1rh7_A 12 KEALSRQEPK--TISCTSVTSSGRLASCPAGMVVTGCA 47 (81)
T ss_dssp TTTSTTSCCC--CEEEEEEEEESSEEECCTTCEEEEEE
T ss_pred HHHhhccccC--ceeEEEEeecCccccCCCccEeeecc
Confidence 4555555322 444444444 344999999998877
No 490
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=22.78 E-value=62 Score=34.19 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLGLITIL 220 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~l~~~m 220 (229)
+.+++..|.|||||+..-...+-.++
T Consensus 943 ~nvlv~APTGSGKTliaelail~~l~ 968 (1724)
T 4f92_B 943 DNVFVGAPTGSGKTICAEFAILRMLL 968 (1724)
T ss_dssp SCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCchHHHHHHHHHHHH
Confidence 67999999999999976555444444
No 491
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=21.97 E-value=37 Score=33.85 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.7
Q ss_pred cEEEEEeCCCCChHH
Q psy13262 195 TVLLLTGPNMGGKST 209 (229)
Q Consensus 195 ~~~~ltGpN~~GKSt 209 (229)
+.+++.+|.|+|||+
T Consensus 72 ~dvlv~apTGSGKTl 86 (1054)
T 1gku_B 72 ESFAATAPTGVGKTS 86 (1054)
T ss_dssp CCEECCCCBTSCSHH
T ss_pred CCEEEEcCCCCCHHH
Confidence 678999999999996
No 492
>1sh1_A Neurotoxin I; NMR {Stichodactyla helianthus} SCOP: g.9.1.1 PDB: 2sh1_A 1shi_A
Probab=21.70 E-value=1e+02 Score=18.81 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=15.6
Q ss_pred CCeeeEEEeecCCCCCCCeEE
Q psy13262 14 KPITAIAVIEDIQKCPSGYTV 34 (229)
Q Consensus 14 ~~~t~~~~~~~~~~~p~g~~~ 34 (229)
+..|+.-|+ ..||.||.-
T Consensus 15 ~tlsGtvw~---~~CpsGW~k 32 (48)
T 1sh1_A 15 APLTGTVDL---GSCNAGWEK 32 (48)
T ss_dssp SSEEEEEEE---SSCCTTEEE
T ss_pred CcceeEEee---cCCcchhhh
Confidence 488999999 789999976
No 493
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=20.94 E-value=63 Score=29.46 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=18.7
Q ss_pred cEEEEEeCCCCChHHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQLG 215 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i~ 215 (229)
-.+++-|--||||+|.+|.+.
T Consensus 44 vlIvfEG~D~AGKg~~Ik~l~ 64 (500)
T 3czp_A 44 VIILINGIEGAGKGETVKLLN 64 (500)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEeCcCCCCHHHHHHHHH
Confidence 678899999999999999873
No 494
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=20.43 E-value=26 Score=32.23 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.9
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q psy13262 195 TVLLLTGPNMGGKSTVMRQL 214 (229)
Q Consensus 195 ~~~~ltGpN~~GKStlLk~i 214 (229)
-.+.|.|+.|. ||.++|.+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHH
T ss_pred eeEEEECCCCh-HHHHHHHH
Confidence 48999999999 99999998
Done!