Your job contains 1 sequence.
>psy13262
MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRY
LCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQS
NNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRC
KEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13262
(229 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0030894 - symbol:CG7192 species:7227 "Drosophila m... 269 2.3e-23 1
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 182 1.3e-12 1
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 174 8.3e-12 1
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 174 8.4e-12 1
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 173 8.5e-12 1
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 173 1.0e-11 1
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 173 1.2e-11 1
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 170 2.4e-11 1
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 168 3.9e-11 1
ZFIN|ZDB-GENE-060929-372 - symbol:mvb12ba "multivesicular... 161 1.5e-10 1
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 164 6.2e-10 1
MGI|MGI:1919793 - symbol:Mvb12b "multivesicular body subu... 156 1.2e-09 1
UNIPROTKB|Q9H7P6 - symbol:MVB12B "Multivesicular body sub... 155 1.6e-09 1
WB|WBGene00015508 - symbol:mvb-12 species:6239 "Caenorhab... 153 2.0e-09 1
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 155 1.5e-08 1
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 155 1.7e-08 1
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 155 1.7e-08 1
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 149 1.1e-07 1
UNIPROTKB|I3LUG7 - symbol:LOC100624532 "Uncharacterized p... 139 1.4e-06 1
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 129 2.8e-05 1
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 128 3.5e-05 1
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 128 3.8e-05 1
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 127 4.7e-05 1
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 104 0.00012 2
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 122 0.00018 1
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 118 0.00024 3
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 118 0.00024 3
UNIPROTKB|A8JBH4 - symbol:CHLREDRAFT_106717 "Predicted pr... 91 0.00053 1
>FB|FBgn0030894 [details] [associations]
symbol:CG7192 species:7227 "Drosophila melanogaster"
[GO:0000813 "ESCRT I complex" evidence=IDA] EMBL:AE014298
InterPro:IPR023341 PROSITE:PS51498 GeneTree:ENSGT00530000063575
KO:K12186 InterPro:IPR018798 InterPro:IPR023340 Pfam:PF10240
PROSITE:PS51497 eggNOG:NOG300679 EMBL:BT016115
RefSeq:NP_001245731.1 RefSeq:NP_573268.1 RefSeq:NP_728135.1
UniGene:Dm.17327 SMR:Q9VWY7 IntAct:Q9VWY7 STRING:Q9VWY7
EnsemblMetazoa:FBtr0074527 EnsemblMetazoa:FBtr0074528
EnsemblMetazoa:FBtr0310272 GeneID:32791 KEGG:dme:Dmel_CG7192
UCSC:CG7192-RA FlyBase:FBgn0030894 InParanoid:Q9VWY7 OMA:DFQLERQ
OrthoDB:EOG434TP0 GenomeRNAi:32791 NextBio:780399 Uniprot:Q9VWY7
Length = 352
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 47/97 (48%), Positives = 74/97 (76%)
Query: 8 SFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKT 66
SF+PD++PIT++ ++ED ++CP ++ IS+T DQD+DAD+WR+ + F R+ TRYLC+SK+
Sbjct: 50 SFLPDNRPITSLHIVEDFERCPKNFSAISRTYDQDSDADLWRDYSLFGRQNTRYLCLSKS 109
Query: 67 ESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
E L +Y+VE + +I++K PP F ++RT DSDQ
Sbjct: 110 EGL--PEYVVETLQVISDKTPPPKEFSQVSRTADSDQ 144
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 182 (69.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 45/99 (45%), Positives = 61/99 (61%)
Query: 135 YQQG----VCVPTFL--GLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDV 184
Y QG +C P L G E+ HP++ S +PC T GD +IPN +IG C+ED
Sbjct: 1066 YSQGGDGPMCRPVLLLPG-EDTHPFLELKGSRHPCITKTFFGDD-FIPNDILIG-CEEDA 1122
Query: 185 ESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
E+ G K +L+TGPNMGGKST++RQ GL+ ++AQM
Sbjct: 1123 EADG----KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQM 1157
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 174 (66.3 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 49/121 (40%), Positives = 68/121 (56%)
Query: 114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEE-PHPYISALESLYPCAT- 165
+YK QS + ++L + Y QG +C P L EE P++ S +PC T
Sbjct: 971 NYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITK 1030
Query: 166 ---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
GD +IPN +IG C+E+ E G K +L+TGPNMGGKST+MRQ GL+ ++AQ
Sbjct: 1031 TFFGDD-FIPNDILIG-CEEEEEENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQ 1084
Query: 223 M 223
M
Sbjct: 1085 M 1085
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 174 (66.3 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 49/121 (40%), Positives = 68/121 (56%)
Query: 114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEE-PHPYISALESLYPCAT- 165
+YK QS + ++L + Y QG +C P L EE P++ S +PC T
Sbjct: 961 NYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITK 1020
Query: 166 ---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
GD +IPN +IG C+E+ E G K +L+TGPNMGGKST+MRQ GL+ ++AQ
Sbjct: 1021 TFFGDD-FIPNDILIG-CEEEEEENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQ 1074
Query: 223 M 223
M
Sbjct: 1075 M 1075
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 173 (66.0 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 46/120 (38%), Positives = 68/120 (56%)
Query: 114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEEPHPYISALESLYPCAT-- 165
+YK QS + ++L + Y +G +C P L E+ P++ S +PC T
Sbjct: 741 NYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKT 800
Query: 166 --GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
GD +IPN +IG C+E+ + G K +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 801 FFGDD-FIPNDILIG-CEEEEQENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 854
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 173 (66.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 46/120 (38%), Positives = 68/120 (56%)
Query: 114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEEPHPYISALESLYPCAT-- 165
+YK QS + ++L + Y +G +C P L E+ P++ S +PC T
Sbjct: 913 NYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKT 972
Query: 166 --GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
GD +IPN +IG C+E+ + G K +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 973 FFGDD-FIPNDILIG-CEEEEQENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1026
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 46/120 (38%), Positives = 68/120 (56%)
Query: 114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEEPHPYISALESLYPCAT-- 165
+YK QS + ++L + Y +G +C P L E+ P++ S +PC T
Sbjct: 1043 NYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKT 1102
Query: 166 --GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
GD +IPN +IG C+E+ + G K +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 1103 FFGDD-FIPNDILIG-CEEEEQENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1156
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 170 (64.9 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 42/98 (42%), Positives = 59/98 (60%)
Query: 135 YQQG----VCVPTF-LGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVE 185
Y QG +C P L E+ HP++ S +PC T GD +IPN +IG C+E+ E
Sbjct: 1063 YSQGGDGPMCRPEIVLPGEDTHPFLEFKGSRHPCITKTFFGDD-FIPNDILIG-CEEEAE 1120
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G K +L+TGPNMGGKST++RQ GL+ ++AQ+
Sbjct: 1121 EHG----KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQL 1154
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 168 (64.2 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 42/90 (46%), Positives = 55/90 (61%)
Query: 139 VCVPTFLGLEEPHP-YISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRK 193
+C P L EE P ++ S +PC T GD +IPN +IG C+E+ E G K
Sbjct: 1073 MCRPIILLPEEDTPPFLDLKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEEENG----K 1126
Query: 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+L+TGPNMGGKST+MRQ GL+ I+AQM
Sbjct: 1127 AYCVLVTGPNMGGKSTLMRQAGLLAIMAQM 1156
>ZFIN|ZDB-GENE-060929-372 [details] [associations]
symbol:mvb12ba "multivesicular body subunit 12Ba"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND]
ZFIN:ZDB-GENE-060929-372 InterPro:IPR023341 PROSITE:PS51498
KO:K12186 InterPro:IPR018798 InterPro:IPR023340 Pfam:PF10240
PROSITE:PS51497 eggNOG:NOG300679 HOVERGEN:HBG105828
OrthoDB:EOG48GW3Z EMBL:BC124180 IPI:IPI00803749
RefSeq:NP_001070074.1 UniGene:Dr.151157 STRING:Q08CM0 GeneID:767667
KEGG:dre:767667 CTD:767667 InParanoid:Q08CM0 NextBio:20918059
Bgee:Q08CM0 Uniprot:Q08CM0
Length = 296
Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 41/139 (29%), Positives = 72/139 (51%)
Query: 10 IPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL 69
+P D PIT + V+ + P+GY V+++T D DAD+W++ F + TRYLC ++ S
Sbjct: 14 MPMD-PITGVGVVASRNRAPTGYDVVAQTTD-GIDADLWKDGLFKSKVTRYLCFTRAFSK 71
Query: 70 --FQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQ 127
+ ++ ++ +I+ K+T P GF I T+D+ + +R + + P+ S
Sbjct: 72 ENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEPAFRKRRLCIKFIPRDSTEAAICD 131
Query: 128 RNILKDMYQQGVCVPTFLG 146
IL +Q TF+G
Sbjct: 132 IRIL-GRSKQAPPQYTFIG 149
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 164 (62.8 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 41/91 (45%), Positives = 56/91 (61%)
Query: 139 VCVPTFL--GLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNR 192
+C P L G + P P++ S +PC T GD +IPN +IG C+E+ E N
Sbjct: 1049 MCRPVILLPGEDTP-PFLYLKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEEE----ND 1101
Query: 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
K +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 1102 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1132
>MGI|MGI:1919793 [details] [associations]
symbol:Mvb12b "multivesicular body subunit 12B"
species:10090 "Mus musculus" [GO:0005768 "endosome" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
MGI:MGI:1919793 GO:GO:0031902 GO:GO:0015031 InterPro:IPR023341
PROSITE:PS51498 GeneTree:ENSGT00530000063575 HOGENOM:HOG000231822
KO:K12186 InterPro:IPR018798 InterPro:IPR023340 Pfam:PF10240
PROSITE:PS51497 CTD:89853 eggNOG:NOG300679 HOVERGEN:HBG105828
OMA:PEMPMDP OrthoDB:EOG48GW3Z EMBL:AK131113 EMBL:AL845360
EMBL:BX649361 EMBL:BC049129 EMBL:BC059907 IPI:IPI00454035
RefSeq:NP_780393.2 UniGene:Mm.254914 ProteinModelPortal:Q6KAU4
SMR:Q6KAU4 STRING:Q6KAU4 PhosphoSite:Q6KAU4 PaxDb:Q6KAU4
PRIDE:Q6KAU4 DNASU:72543 Ensembl:ENSMUST00000041555 GeneID:72543
KEGG:mmu:72543 UCSC:uc008jib.1 InParanoid:A2ARF1 NextBio:336455
Bgee:Q6KAU4 Genevestigator:Q6KAU4 GermOnline:ENSMUSG00000038740
Uniprot:Q6KAU4
Length = 317
Score = 156 (60.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 39/138 (28%), Positives = 72/138 (52%)
Query: 11 PDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL- 69
P D PIT + V+ + P+GY V+++T D DAD+W++ F + TRYLC +++ S
Sbjct: 44 PMD-PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKE 101
Query: 70 -FQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQR 128
+ ++ ++ +I+ K+T P GF I T+D+ + ++ + + P+ S
Sbjct: 102 NSHLGNVLVDMKLIDVKDTLPVGFIPIQETVDTQEVVFRKKRLCIKFIPRDSTEAAICDI 161
Query: 129 NILKDMYQQGVCVPTFLG 146
I+ +Q TF+G
Sbjct: 162 RIM-GRTKQAPPQYTFIG 178
>UNIPROTKB|Q9H7P6 [details] [associations]
symbol:MVB12B "Multivesicular body subunit 12B"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
GO:GO:0031902 GO:GO:0015031 InterPro:IPR023341 PROSITE:PS51498
HOGENOM:HOG000231822 KO:K12186 InterPro:IPR018798
InterPro:IPR023340 Pfam:PF10240 PROSITE:PS51497 EMBL:AK024432
EMBL:BC028675 IPI:IPI00022918 IPI:IPI00552643 RefSeq:NP_001011703.1
RefSeq:NP_258257.1 UniGene:Hs.162659 PDB:3TOW PDBsum:3TOW
ProteinModelPortal:Q9H7P6 SMR:Q9H7P6 IntAct:Q9H7P6 STRING:Q9H7P6
PhosphoSite:Q9H7P6 DMDM:114149296 PaxDb:Q9H7P6 PRIDE:Q9H7P6
DNASU:89853 Ensembl:ENST00000361171 Ensembl:ENST00000545391
GeneID:89853 KEGG:hsa:89853 UCSC:uc004bqg.2 CTD:89853
GeneCards:GC09P129089 HGNC:HGNC:23368 HPA:HPA043683
neXtProt:NX_Q9H7P6 PharmGKB:PA162385827 eggNOG:NOG300679
HOVERGEN:HBG105828 InParanoid:Q9H7P6 OMA:PEMPMDP OrthoDB:EOG48GW3Z
ChiTaRS:FAM125B GenomeRNAi:89853 NextBio:76346 ArrayExpress:Q9H7P6
Bgee:Q9H7P6 CleanEx:HS_FAM125B Genevestigator:Q9H7P6
GermOnline:ENSG00000196814 Uniprot:Q9H7P6
Length = 319
Score = 155 (59.6 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 37/134 (27%), Positives = 70/134 (52%)
Query: 15 PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
PIT + V+ + P+GY V+++T D DAD+W++ F + TRYLC +++ S +
Sbjct: 49 PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 107
Query: 73 DYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILK 132
++ ++ +I+ K+T P GF I T+D+ + ++ + + P+ S I+
Sbjct: 108 GNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIM- 166
Query: 133 DMYQQGVCVPTFLG 146
+Q TF+G
Sbjct: 167 GRTKQAPPQYTFIG 180
>WB|WBGene00015508 [details] [associations]
symbol:mvb-12 species:6239 "Caenorhabditis elegans"
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0010008 "endosome membrane"
evidence=IDA] [GO:0000813 "ESCRT I complex" evidence=IPI]
[GO:0032510 "endosome to lysosome transport via multivesicular body
sorting pathway" evidence=IMP] [GO:0032801 "receptor catabolic
process" evidence=IMP] GO:GO:0005829 GO:GO:0006898 GO:GO:0030163
GO:GO:0032801 InterPro:IPR023341 PROSITE:PS51498 GO:GO:0000813
GO:GO:0032510 GeneTree:ENSGT00530000063575 KO:K12186
InterPro:IPR018798 InterPro:IPR023340 Pfam:PF10240 PROSITE:PS51497
eggNOG:NOG300679 EMBL:FO080377 PIR:T29268 RefSeq:NP_501302.1
ProteinModelPortal:Q17687 SMR:Q17687 STRING:Q17687 PaxDb:Q17687
EnsemblMetazoa:C06A6.3 GeneID:182286 KEGG:cel:CELE_C06A6.3
UCSC:C06A6.3 CTD:182286 WormBase:C06A6.3 HOGENOM:HOG000021195
InParanoid:Q17687 OMA:IDYTADS NextBio:917038 Uniprot:Q17687
Length = 277
Score = 153 (58.9 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 34/108 (31%), Positives = 58/108 (53%)
Query: 15 PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFL-RKTRYLCVSKT--ESLFQ 71
PITAI ++ D K P G+ I K D T+AD+WR+ F + R+ RY+C S +S +
Sbjct: 16 PITAICIVADKNKAPRGFLPIIKCQDDQTEADLWRDGFFTINRQVRYICTSTEIPDSNIK 75
Query: 72 IDY-IVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQ 118
++ N+ I+ E + P G+ I T DS + + ++ + +P+
Sbjct: 76 TPVQVITNLIIVRESDPIPHGYVAIDYTADSREKSLRKKYVCIRTEPR 123
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 136 QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPT 195
Q +CVP + + P+I E +PCA TYIPN +G E P
Sbjct: 906 QMVICVPELVS-DADQPFIQLEEGYHPCANAS-TYIPNGLELGTASE----------AP- 952
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQM 223
+ LLTGPNMGGKST+MR++GL+ I+AQ+
Sbjct: 953 LSLLTGPNMGGKSTLMREVGLLVIMAQI 980
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 139 VCVPTFL-GLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRK 193
+C P L ++ P++ + +PC T GD +IPN VIG ED G +
Sbjct: 1055 LCRPVILLPVDSAPPFLELKNARHPCITKTFFGDD-FIPNDIVIGSKDED------GGSE 1107
Query: 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+ +L+TGPNMGGKST+MRQ GL+ I+AQ+
Sbjct: 1108 ASCVLVTGPNMGGKSTLMRQAGLLVIMAQL 1137
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 139 VCVPTFL-GLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRK 193
+C P L ++ P++ + +PC T GD +IPN VIG ED G +
Sbjct: 1071 LCRPVILLPVDSAPPFLELKNARHPCITKTFFGDD-FIPNDIVIGSKDED------GGSE 1123
Query: 194 PTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+ +L+TGPNMGGKST+MRQ GL+ I+AQ+
Sbjct: 1124 ASCVLVTGPNMGGKSTLMRQAGLLVIMAQL 1153
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 152 PYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGK 207
P++ S +PC T GD +IPN IG ++ E+ + +L+TGPNMGGK
Sbjct: 1091 PFLDLRGSRHPCVTKTFFGDD-FIPNDIFIGCPGDEEEAQDDAKALAPCVLVTGPNMGGK 1149
Query: 208 STVMRQLGLITILAQM 223
ST+MRQ GL+ ILAQ+
Sbjct: 1150 STLMRQCGLVVILAQL 1165
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 37/84 (44%), Positives = 50/84 (59%)
Query: 139 VCVPTFL--GLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNR 192
+C P L G + P P++ S +PC T GD +IPN +IG C+E+ E N
Sbjct: 924 MCRPVILLPGEDTP-PFLYLKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEEE----ND 976
Query: 193 KPTVLLLTGPNMGGKSTVMRQLGL 216
K +L+TGPNMGGKST+MRQ+ L
Sbjct: 977 KAYCVLVTGPNMGGKSTLMRQVNL 1000
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 129 NILKDMYQQGV--CVPTFLGLEEPHPYISALESLYPCA---TGDQTYIPNSTVIGRCKED 183
++ K +Q + C P F+ ++ +I + +PC +GD +IPN D
Sbjct: 962 SLYKVSFQSSIQMCRPLFVSSDQ-RGFIDVKDMRHPCIYSKSGDD-FIPN---------D 1010
Query: 184 VESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
+ E N P++++LTGPNMGGKST++RQ ++ I+AQM
Sbjct: 1011 ISLNTENN-PPSLMVLTGPNMGGKSTLLRQSCILVIMAQM 1049
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 128 (50.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 152 PYISALESLYPC-ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
P+I +PC A+ +IPN +G D++ G+ ++LLTGPNMGGKST
Sbjct: 957 PFIELTSGRHPCLASMGVNFIPNDIYLG----DIKQTGQFEDNKNLILLTGPNMGGKSTT 1012
Query: 211 MRQLGLITILAQM 223
+R ++ ILAQ+
Sbjct: 1013 LRMACVMAILAQI 1025
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 128 (50.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 36/96 (37%), Positives = 51/96 (53%)
Query: 133 DMYQQGVCVPTFLG-LEEPHPYISALESLYPCATGDQ----TYIPNSTVIGRCKEDVESG 187
D Y+ C P G + P++SA +P GD +++PN+ IG
Sbjct: 1021 DSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIG--------- 1071
Query: 188 GEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
G K + +LLTGPNMGGKST++RQ+ L ILAQ+
Sbjct: 1072 --GAEKASFILLTGPNMGGKSTLLRQVCLAVILAQI 1105
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 127 (49.8 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 140 CVPTFLGLEEPHPYISALESLYPC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVL 197
C P + ++ H Y L +PC A+ T++PN V+G GE P ++
Sbjct: 975 CRPEIIEQKDGHLYFEELR--HPCINASAASTFVPNDVVLG---------GES---PNMI 1020
Query: 198 LLTGPNMGGKSTVMRQLGLITILAQM 223
+LTGPNM GKST++RQ+ + I+AQ+
Sbjct: 1021 VLTGPNMAGKSTLLRQVCIAVIMAQL 1046
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 104 (41.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 150 PHPYISALESLYPCATGDQTYIPNST-VIGRCKEDVESGGEG----NRKPTVLLLTGPNM 204
P PYI L+P + +T++ +S + ++D+ + K L++TGPNM
Sbjct: 634 PIPYIRP--KLHPMDSERRTHLISSRHPVLEMQDDISFISNDVTLESGKGDFLIITGPNM 691
Query: 205 GGKSTVMRQLGLITILAQM 223
GGKST +RQ+G+I+++AQ+
Sbjct: 692 GGKSTYIRQVGVISLMAQI 710
Score = 62 (26.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 4 QVFQSFIPDDKPITAI-AVIEDIQKCPSGYTV--ISK---TVDQDTDADMWRESAFFLRK 57
QVF SF+ DD P + ++ + P + V +SK V+ D D + E+ F+ K
Sbjct: 430 QVFTSFLEDDSPTEPVNELVRSVWLAPLSHHVEPLSKFEEMVETTVDLDAYEENNEFMIK 489
Query: 58 TRY 60
+
Sbjct: 490 VEF 492
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 148 EEPHPYISALESLYPC-ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGG 206
+E P++ +++P AT +IPN+ +G KE K T LLLTGPNMGG
Sbjct: 970 KEKKPFLILENNIHPVVATLMPNFIPNNIYMGCDKE----------KETTLLLTGPNMGG 1019
Query: 207 KSTVMRQLGLITILAQM 223
KST++RQ + ILAQ+
Sbjct: 1020 KSTLLRQTAISVILAQI 1036
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 118 (46.6 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 139 VCVPTFLGLEEPHPYISALESLYPC-ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVL 197
+C+P F PY+ + ++PC A + + +T S G + V+
Sbjct: 905 MCMPEF-DFNATDPYLIVDKGVHPCLALQSRNEVTQTTSF-----IANSTTMGASEAAVM 958
Query: 198 LLTGPNMGGKSTVMRQLGLITILAQM 223
LLTGPNMGGKST+MRQ ++ ILA +
Sbjct: 959 LLTGPNMGGKSTLMRQTAVLAILAHI 984
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 18/80 (22%), Positives = 31/80 (38%)
Query: 37 KTVDQDTDADMWRES--AFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCL 94
K ++Q A W S A T + K L ++ + I + E PD +
Sbjct: 623 KKLEQRQKAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAI 682
Query: 95 IARTLDSDQGQICERGGVVD 114
T+ ++Q +I E +D
Sbjct: 683 FFDTIKTNQKKIAELLAAID 702
Score = 40 (19.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 10 IPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDA 45
IPD + ++ V++ + K G + V++ T A
Sbjct: 161 IPDGEAVSMAGVLDKMDKIMDGEGERKRIVEKTTGA 196
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 118 (46.6 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 139 VCVPTFLGLEEPHPYISALESLYPC-ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVL 197
+C+P F PY+ + ++PC A + + +T S G + V+
Sbjct: 905 MCMPEF-DFNATDPYLIVDKGVHPCLALQSRNEVTQTTSF-----IANSTTMGASEAAVM 958
Query: 198 LLTGPNMGGKSTVMRQLGLITILAQM 223
LLTGPNMGGKST+MRQ ++ ILA +
Sbjct: 959 LLTGPNMGGKSTLMRQTAVLAILAHI 984
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 18/80 (22%), Positives = 31/80 (38%)
Query: 37 KTVDQDTDADMWRES--AFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCL 94
K ++Q A W S A T + K L ++ + I + E PD +
Sbjct: 623 KKLEQRQKAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAI 682
Query: 95 IARTLDSDQGQICERGGVVD 114
T+ ++Q +I E +D
Sbjct: 683 FFDTIKTNQKKIAELLAAID 702
Score = 40 (19.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 10 IPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDA 45
IPD + ++ V++ + K G + V++ T A
Sbjct: 161 IPDGEAVSMAGVLDKMDKIMDGEGERKRIVEKTTGA 196
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 91 (37.1 bits), Expect = 0.00053, P = 0.00053
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 198 LLTGPNMGGKSTVMRQLGLITILAQMENP 226
L+TGPNM GKST ++Q+GL+ +LAQ P
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCP 29
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 229 229 0.00082 113 3 11 22 0.41 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 588 (63 KB)
Total size of DFA: 180 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.92u 0.08s 20.00t Elapsed: 00:00:03
Total cpu time: 19.92u 0.08s 20.00t Elapsed: 00:00:03
Start: Thu Aug 15 16:03:14 2013 End: Thu Aug 15 16:03:17 2013