RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13262
(229 letters)
>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding
domain, negatively charged MEMB protein transport; 1.34A
{Homo sapiens}
Length = 152
Score = 94.8 bits (235), Expect = 9e-25
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 15 PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
PIT + V+ + P+GY V+++T D DAD+W++ F + TRYLC +++ S +
Sbjct: 3 PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 61
Query: 73 DYIVENICIINEKETPPDGFCLIARTLDSDQ 103
++ ++ +I+ K+T P GF I T+D+ +
Sbjct: 62 GNVLVDMKLIDIKDTLPVGFIPIQETVDTQE 92
Score = 41.2 bits (96), Expect = 6e-05
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 10 IPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL 69
+ + +I+ P G+ I +TVD A + + LC+ K
Sbjct: 59 SHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAF----------RKKRLCI-KFIPR 107
Query: 70 FQIDYIVENICIINEKETPPDGFCLI 95
+ + +I I+ + P + I
Sbjct: 108 DSTEAAICDIRIMGRTKQAPPQYTFI 133
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 93.2 bits (232), Expect = 5e-22
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 135 YQQGVCVPTFLGLEEPHPYISALESLYPC---ATGDQTYIPNSTVIGRCKEDVESGGEGN 191
+C P L E+ P++ S +PC +IPN +IG E + N
Sbjct: 732 GDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGC-----EEEEQEN 786
Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
K +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 787 GKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 818
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 76.9 bits (190), Expect = 2e-16
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 12/57 (21%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
Y+PN+T + + R V+++TGPNMGGKS+ ++Q+ LITI+AQ+
Sbjct: 658 QDQYVPNNTDLS---------EDSER---VMIITGPNMGGKSSYIKQVALITIMAQI 702
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 75.2 bits (186), Expect = 6e-16
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
++ +I N + + + +L++TGPNMGGKST MRQ LI ++A +
Sbjct: 593 NEPFIANPLNL-------------SPQRRMLIITGPNMGGKSTYMRQTALIALMAYI 636
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 75.1 bits (185), Expect = 8e-16
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 162 PC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITI 219
C + +IPN + K ++TGPNMGGKST +RQ G+I +
Sbjct: 640 ACVEVQDEIAFIPNDVYFEK------------DKQMFHIITGPNMGGKSTYIRQTGVIVL 687
Query: 220 LAQM 223
+AQ+
Sbjct: 688 MAQI 691
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 72.9 bits (180), Expect = 3e-15
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 15/56 (26%)
Query: 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
++PN + ++L+TGPNM GKST +RQ LI +LAQ+
Sbjct: 565 TEFVPNDLEMAH---------------ELVLITGPNMAGKSTFLRQTALIALLAQV 605
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.022
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 3 KQV---FQS----FIPDDKPITAI-AVIE 23
KQ Q+ + D P AI A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 30.7 bits (69), Expect = 0.28
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 193 KPTVLLLTGPNMG-GKSTVMRQL 214
P ++++TG GK+T+ + L
Sbjct: 4 TPALIIVTGH-PATGKTTLSQAL 25
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.4 bits (68), Expect = 0.32
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 190 GNRKPTVLLLTGPNMG-GKSTVMRQL 214
+ +LLL+G G GKST+ L
Sbjct: 5 DDLGGNILLLSGH-PGSGKSTIAEAL 29
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 29.3 bits (66), Expect = 0.82
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
SGG G+ +P++++ GP GK++++ L
Sbjct: 41 SGGGGSYQPSIIIA-GPQNSGKTSLLTLL 68
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 28.8 bits (64), Expect = 0.98
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQL 214
+ ++ + GP GK+ L
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTL 25
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.0
Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 41/132 (31%)
Query: 83 NEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVP 142
+E TP + L+ + L G V + S F Q +L +
Sbjct: 52 DEPTTPAE---LVGKFL-----------GYVSSLVEPSKVGQFDQ--VLNLCLTEFEN-- 93
Query: 143 TFLGLEEPHPYISALESLYPCATGD-----QTYIPNSTVIGR-CKEDVES---------- 186
+L + H + L + YI + R + S
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 187 -------GGEGN 191
GG+GN
Sbjct: 154 AQLVAIFGGQGN 165
Score = 28.5 bits (63), Expect = 2.6
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 15/66 (22%)
Query: 26 QKCPSGYTV---ISKTVDQDTDADMWRESAFFLRKTRY-----LCVS-------KTESLF 70
+ G I K +++ + + +R L T++ + K++ L
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 71 QIDYIV 76
D
Sbjct: 1754 PADATF 1759
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 28.5 bits (63), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 188 GEGNRKPTVLLLTGPNMGGKSTVMRQLGLI 217
G R+ LLL G GKST ++Q+ +I
Sbjct: 1 GADARRELKLLLLGTGESGKSTFIKQMRII 30
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.9 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
+ G+ V++L+GP+ GKSTV+R L
Sbjct: 12 ARGQPAAVGRVVVLSGPSAVGKSTVVRCL 40
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.9 bits (61), Expect = 2.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
R + G + +++P +LL G + GK+T+ R
Sbjct: 17 RNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIK 52
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 27.5 bits (62), Expect = 2.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMRQL 214
N K +++L+GP+ GK TV +++
Sbjct: 3 NEKGLLIVLSGPSGVGKGTVRKRI 26
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.1 bits (63), Expect = 3.1
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 196 VLLLTGPNMGGKSTVMRQL-GLI 217
VL L G N GKST ++ L G
Sbjct: 105 VLGLVGTNGIGKSTALKILAGKQ 127
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 27.7 bits (60), Expect = 3.3
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
E++ G + PT LL G GK+++ +
Sbjct: 18 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAI 53
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 3.7
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 197 LLLTGPNMGGKSTVMRQL 214
+++TG GK+T+++++
Sbjct: 3 IIITGEPGVGKTTLVKKI 20
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 27.1 bits (59), Expect = 4.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 194 PTVLLLTGPNMGGKSTVM 211
V L+G N GKST M
Sbjct: 27 ELVTTLSGGNGAGKSTTM 44
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 27.5 bits (60), Expect = 4.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLI 217
R LLL G GKST+++Q+ ++
Sbjct: 38 RATHRLLLLGAGESGKSTIVKQMRIL 63
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 27.1 bits (61), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 196 VLLLTGPNMGGKSTVMRQL-GLI 217
+L L GPN GKST++ ++ G+
Sbjct: 28 ILHLVGPNGAGKSTLLARMAGMT 50
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.1 bits (59), Expect = 5.9
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 155 SALESLYPCATGDQTYIPNSTVIGR---CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM 211
+ L P T + + + + +E N + +++ G + GK+++
Sbjct: 96 TELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLS 155
Query: 212 RQL 214
R L
Sbjct: 156 RTL 158
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 26.7 bits (60), Expect = 6.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMRQL 214
+ +++L+GP+ GK TV +
Sbjct: 5 TERGLLIVLSGPSGVGKGTVREAV 28
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 26.4 bits (58), Expect = 6.9
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 191 NRKPTVLLLTGPNMGGKSTV----MRQLGLITILAQ 222
K ++ ++G GK+T+ + L ++++Q
Sbjct: 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 26.8 bits (58), Expect = 7.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 193 KPTVLLLTGPNMGGKSTVM 211
V L+G N GKST M
Sbjct: 28 DELVTTLSGGNGAGKSTTM 46
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 26.3 bits (58), Expect = 7.4
Identities = 6/24 (25%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMRQL 214
+ +P++++ GP GK++++ L
Sbjct: 10 SYQPSIIIA-GPQNSGKTSLLTLL 32
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 26.9 bits (60), Expect = 7.4
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 196 VLLLTGPNMGGKSTVMRQL-GLI 217
+L + G N GK+TV++ L G I
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEI 49
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 26.5 bits (57), Expect = 7.9
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228
GN+ P + +GP GKS Q + L + +
Sbjct: 27 GNKCPLFIFFSGPQGSGKSFTSIQ--IYNHLMEKYGGEK 63
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 26.5 bits (59), Expect = 8.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 181 KEDVESGGEGNRKPTVLLLTGPNMGGKST 209
+ D+ KP V++ G N GK+T
Sbjct: 116 RIDLIEEIRKAEKPYVIMFVGFNGSGKTT 144
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 26.0 bits (58), Expect = 8.6
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 199 LTGPNMG-GKSTVMRQL 214
L G G GKST+ R+L
Sbjct: 7 LVGL-PGSGKSTIGRRL 22
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 26.5 bits (58), Expect = 8.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 199 LTGPNMGGKSTVMRQLG 215
+ GPN GKST+MR +
Sbjct: 466 ICGPNGCGKSTLMRAIA 482
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 26.5 bits (59), Expect = 9.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQMENPQL 228
V+ + GPN GK+T ++ ILA P L
Sbjct: 119 VVGIVGPNGTGKTTAVK------ILAGQLIPNL 145
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 25.9 bits (57), Expect = 9.8
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMR----QLGLITILAQMENPQLI 229
+ +P ++ ++G GKSTV LG + + ++
Sbjct: 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVIL 64
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 26.0 bits (57), Expect = 9.8
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMR----QLGLITILAQMENPQLI 229
+P ++ ++G GKS+V LG + + + ++
Sbjct: 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVIL 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,382,804
Number of extensions: 190384
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 45
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)