RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13262
(229 letters)
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 224
Score = 39.4 bits (91), Expect = 2e-04
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 161 YPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITIL 220
+P ++PN + ++L+TGPNM GKST +RQ LI +L
Sbjct: 17 HPVVERRTEFVPNDLEMA---------------HELVLITGPNMAGKSTFLRQTALIALL 61
Query: 221 AQM 223
AQ+
Sbjct: 62 AQV 64
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 234
Score = 34.0 bits (77), Expect = 0.009
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 140 CVPTFLGLEEPHPYISALESLYPC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVL 197
PTF P I E +P ++ +I N + + +L
Sbjct: 2 TCPTF----IDKPGIRITEGRHPVVEQVLNEPFIANPLNLSP-------------QRRML 44
Query: 198 LLTGPNMGGKSTVMRQLGLITILAQM 223
++TGPNMGGKST MRQ LI ++A +
Sbjct: 45 IITGPNMGGKSTYMRQTALIALMAYI 70
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.8 bits (68), Expect = 0.073
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMRQL 214
N + +L G + GKS V ++
Sbjct: 3 NHDHHIYVLMGVSGSGKSAVASEV 26
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.7 bits (68), Expect = 0.13
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
E++ G + PT LL G GK+++ +
Sbjct: 20 EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAI 52
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.8 bits (66), Expect = 0.19
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQL 214
P V++ G GKST +++
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEH 34
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 29.2 bits (64), Expect = 0.33
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMR 212
YI + + + +E+ LLL GP GK+T+
Sbjct: 11 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 53
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.4 bits (62), Expect = 0.49
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 197 LLLTGPNMGGKSTVMRQL 214
+++TG GK+T+++++
Sbjct: 3 IIITGEPGVGKTTLVKKI 20
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.0 bits (61), Expect = 0.75
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMRQL 214
+ +LLL+G GKST+ L
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEAL 24
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.8 bits (61), Expect = 0.91
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 191 NRKPTVLLLTGPNMGGKST 209
++ P V++L G GK+T
Sbjct: 9 DKIPYVIMLVGVQGTGKAT 27
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.4 bits (59), Expect = 1.2
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
+G +G+ +L GP GK+T +
Sbjct: 44 AGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.0 bits (58), Expect = 1.5
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMRQL 214
+ + LTG GK + R L
Sbjct: 3 ATQGFTIFLTGYMNSGKDAIARAL 26
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.9 bits (59), Expect = 1.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 191 NRKPTVLLLTGPNMGGKST 209
+ P V+L+ G N GK+T
Sbjct: 6 GKAPFVILMVGVNGVGKTT 24
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.9 bits (58), Expect = 1.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 194 PTVLLLTGPNMGGKSTVMRQL 214
PT++++ G GK+ + ++L
Sbjct: 2 PTLIVMVGLPARGKTYISKKL 22
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 26.9 bits (59), Expect = 2.0
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 183 DVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLITI 219
D E G + +L GP GKS + + G++
Sbjct: 19 DFEMGRD------YCVLLGPTGAGKSVFLELIAGIVKP 50
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 26.9 bits (58), Expect = 2.0
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 194 PTVLLLTGPNMGGKSTVMRQLGLI 217
V L+G N GKST M
Sbjct: 24 ELVTTLSGGNGAGKSTTMAAFVTA 47
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.1 bits (59), Expect = 2.0
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI 229
GN+ P + +GP GKS Q + L + +
Sbjct: 23 GNKCPLFIFFSGPQGSGKSFTSIQ--IYNHLMEKYGGEKS 60
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.5 bits (57), Expect = 2.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQL 214
+++L G + GKS ++R L
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCL 23
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 2.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 187 GGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
G G + + LTG + GK+TV L
Sbjct: 12 GTRGGFRGCTVWLTGLSGAGKTTVSMAL 39
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.6 bits (57), Expect = 2.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 191 NRKPTVLLLTGPNMGGKSTVMRQL 214
VL + G + GK+T+ QL
Sbjct: 19 TAGRLVLGIDGLSRSGKTTLANQL 42
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.2 bits (56), Expect = 2.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 196 VLLLTGPNMGGKSTVMRQL 214
++L G GKST R+
Sbjct: 4 IILTIGCPGSGKSTWAREF 22
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.6 bits (58), Expect = 2.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 192 RKPTVLLLTGPNMGGKST 209
P V+++ G N GK+T
Sbjct: 9 EPPFVIMVVGVNGTGKTT 26
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 2.8
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 192 RKPTVLLLTGPNMGGKSTVMRQL-GLITI 219
K V L+ GPN GKST++ + G +
Sbjct: 28 NKGDVTLIIGPNGSGKSTLINVITGFLKA 56
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 26.4 bits (58), Expect = 2.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227
V+ GPN GK+T+++ ++ P
Sbjct: 29 VVNFHGPNGIGKTTLLK------TISTYLKPL 54
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 26.5 bits (57), Expect = 3.1
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMR 212
+I V + +E+ +LL GP GK+T+
Sbjct: 11 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAH 53
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.8 bits (56), Expect = 3.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 193 KPTVLLLTGPNMGGKST 209
K V+L+ G N GK+T
Sbjct: 5 KGRVVLVVGVNGVGKTT 21
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.2 bits (57), Expect = 3.7
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227
++ GP GK+ + ++A P
Sbjct: 28 YFVILGPTGAGKTLFLE------LIAGFHVPD 53
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 25.7 bits (56), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 196 VLLLTGPNMGGKSTVMRQL-GLITI 219
++ GP+ GKST++R + GL TI
Sbjct: 28 FVVFVGPSGCGKSTLLRMIAGLETI 52
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 25.8 bits (55), Expect = 4.2
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 189 EGNRKPTVLLLTGPNMGGKSTVMRQL 214
+ R LL+ G ++ L
Sbjct: 19 QAGRGHHALLIQALPGMGDDALIYAL 44
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.9 bits (55), Expect = 4.4
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQL 214
K + L+ G N GKS+++ +
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAI 43
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 25.5 bits (56), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 196 VLLLTGPNMGGKSTVMRQL-GLITI 219
L+L GP+ GK+T +R + GL
Sbjct: 34 FLVLLGPSGCGKTTTLRMIAGLEEP 58
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 25.6 bits (56), Expect = 4.7
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 192 RKPTVLLLTGPNMGGKSTVMRQL-GLITI 219
+ ++ L G N GK+T + + GL+
Sbjct: 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 25.7 bits (56), Expect = 4.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 192 RKPTVLLLTGPNMGGKSTVMRQL-GLITI 219
+ + L GPN GK+T +R + LI
Sbjct: 26 EEGEIFGLIGPNGAGKTTTLRIISTLIKP 54
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 25.3 bits (55), Expect = 4.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 184 VESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
V+ G G +L+TG + GKS +L
Sbjct: 11 VDVYGVG------VLITGDSGIGKSETALEL 35
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 25.3 bits (55), Expect = 4.9
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 184 VESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
+E G G +LLTG + GKS L
Sbjct: 11 LEVFGVG------VLLTGRSGIGKSECALDL 35
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 25.6 bits (55), Expect = 5.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 191 NRKPTVLLLTGPNMGGKSTV 210
N++ + LTG + GKST+
Sbjct: 21 NQRGLTIWLTGLSASGKSTL 40
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 25.8 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 187 GGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
G G R P ++ + G GKST R L
Sbjct: 73 GTNGQRIPYIISIAGSVAVGKSTTARVL 100
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 25.6 bits (56), Expect = 5.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227
V+ + G + GKST +R + +E P
Sbjct: 30 VISIIGSSGSGKSTFLR------CINFLEKPS 55
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 25.7 bits (56), Expect = 5.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 192 RKPTVLLLTGPNMGGKSTVMRQL 214
+K ++ +TG + G STV
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTF 24
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.3 bits (55), Expect = 5.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI 217
ST +G +V +G +L L GPN GKST++ ++ G+
Sbjct: 12 STRLGPLSGEVRAG-------EILHLVGPNGAGKSTLLARMAGMT 49
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 25.5 bits (54), Expect = 6.1
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 167 DQTYIPNSTVIGRCKE----------DVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
D+ YIP + R E + SG + + G GK+T+ +
Sbjct: 10 DENYIP-PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFT 66
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 25.3 bits (55), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227
++L GP+ GK+T +R ++A +E P
Sbjct: 31 FMILLGPSGCGKTTTLR------MIAGLEEPS 56
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 25.3 bits (54), Expect = 6.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQL 214
KP V+ + G GK T +
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANI 26
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 24.9 bits (54), Expect = 7.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 184 VESGGEGNRKPTVLLLTGPNMGGKSTVMRQL 214
V+ G G +L+TG + GKS +L
Sbjct: 10 VDIYGLG------VLITGDSGVGKSETALEL 34
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.0 bits (53), Expect = 8.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 196 VLLLTGPNMGGKSTVMRQL 214
+ ++TGP GKST ++L
Sbjct: 4 LYIITGPAGVGKSTTCKRL 22
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.0 bits (53), Expect = 8.5
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 189 EGNRKPTVLLLTGPNMGGKSTVMRQLGL 216
TV L P GKS + QL
Sbjct: 24 PNMVAGTVGALVSPGGAGKSMLALQLAA 51
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 24.7 bits (53), Expect = 9.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQMENPQ 227
+ GP+ GK+T MR I+A ++ P
Sbjct: 33 RFGILGPSGAGKTTFMR------IIAGLDVPS 58
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 24.8 bits (53), Expect = 9.2
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 192 RKPTVLLLTGPNMGGKSTVMRQL 214
RK L+L G + G+ + L
Sbjct: 3 RKT--LVLLGAHGVGRRHIKNTL 23
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase
2A regulatory subunit B56-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 343
Score = 24.8 bits (54), Expect = 9.8
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 64 SKTESLF--QIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICER 109
S E +F +++ I++ I + F +A+ + S Q+ ER
Sbjct: 269 SPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER 316
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 828,186
Number of extensions: 37199
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 54
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)