BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13263
(577 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3
Length = 1358
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 36 EDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDEYVPPKAEVESESEHSSG--- 92
E+ P + PRR S + K + SDSE D GS+ E+ P + S + SSG
Sbjct: 229 EEAQPSVQGPRRSSRQVKKRRVISDSESDI----GGSDVEFKPDTKQEGSSDDASSGVGD 284
Query: 93 -EEELEESVEDPTPSSSEAEVTPMKNGNKR-GLSSKSGQPTKKPKLTAPSTPSTPSFPVS 150
+ E + P A V + G +R L ++G + + + + + +F
Sbjct: 285 SDSEDLGTFGKGAPKRKRAMVA--QGGLRRKSLKKETGSAKRATPILSETKSTLSAFSAP 342
Query: 151 DTSETTPSTSGAQD-------WSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFL 203
SE+ SG + W H ++L P+ D RR P HP++NP TLYVP EFL
Sbjct: 343 QNSESQTHVSGGGNDSSGPTVWYHETLEWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFL 402
Query: 204 KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMK 253
TP M +WW +KSQNFD V+F+KVGKFYEL+HMDAVIG EL +MK
Sbjct: 403 NSCTPGMRKWWQLKSQNFDLVIFYKVGKFYELYHMDAVIGVSELGLIFMK 452
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1215 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACMVENECE 1274
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLF 503
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E + QLF
Sbjct: 1275 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFERMNQSLQLF 1331
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 261 STLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDE 320
S L Q+ +S++P G FPD++ L+ ++ AFDH++A G I PKAG D +YD+ + +
Sbjct: 881 SKTLKQVVTLQSKSPKGRFPDLTAELQRWDTAFDHEKARKTGLITPKAGFDSDYDQALAD 940
Query: 321 IKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKK 379
I+ E+ + YL Q + GC +++Y + +Y LE+P +A++ + + KK
Sbjct: 941 IRENEQSLLEYLDKQRSRLGCKSIVYWGIGR--NRYQLEIPENFATRNLPEEYELKSTKK 998
Query: 380 NVENYVT 386
+ Y T
Sbjct: 999 GCKRYWT 1005
>sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila
melanogaster GN=Msh6 PE=1 SV=2
Length = 1190
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 136/276 (49%), Gaps = 32/276 (11%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSE-----DDSPVTKRPRRKSAKRVKSAIQ 58
D S +K + ++ P GKK + PA DD P + + +RK R+ +
Sbjct: 39 DPDASKSEKENLQNQQPKVKDGKKEASKPAAKRKLPISDDEPASGQRKRK---RIVQP-E 94
Query: 59 SDSEPDDMLQDNGSEDE-------YVPPKAEVESESEHSSGEE----ELEESVEDPTPSS 107
SDSEP+ ++ SED+ Y P + E +S S EE E + SV+ PTP
Sbjct: 95 SDSEPE--MEVTKSEDDFSDCASDYEPDENEASDDSVSSGAEEVSPSENDMSVDSPTPKK 152
Query: 108 SEAEVTPMKNGNKRGLSSKSGQ----------PTKKPKLTAPSTPSTPSFPVSDTSETTP 157
S + + N N SSK + T + KL + + D T
Sbjct: 153 SRKKSKILNNNNNNEPSSKKVKLESTIQLAEGATFQEKLKNLQSNAKQDASYDDIVTNTS 212
Query: 158 STSGAQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIK 217
+ W H +FL PD I D + R P HPDY+ TL+VP +FL +P + QWW +K
Sbjct: 213 NLDEPVVWPHQKLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLK 272
Query: 218 SQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMK 253
S N+DCVLFFKVGKFYEL+HMDA +G +EL +YM+
Sbjct: 273 SDNYDCVLFFKVGKFYELYHMDADVGVNELGFTYMR 308
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 265 TQLCNYESQTP--SGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIK 322
T L +Q P G FPD+S+ L+YF AFDH A+ G I P+AG+D EYD MD I
Sbjct: 721 TTLLKRITQLPESGGSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMDSIG 780
Query: 323 SIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKA-KSNHQRVATK-KKN 380
+EK ++TYL Q HFGC + Y + K K+Y L+VP +ASKA KS TK KK
Sbjct: 781 EVEKRLKTYLVEQERHFGCRITYFGSDK--KRYQLDVPESHASKANKSYTLEGQTKGKKP 838
Query: 381 VENYVTPECRG 391
Y T E R
Sbjct: 839 SRRYTTAETRA 849
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYI---EDKR 446
RGT T DG IA + + C T+F+THYH++ + + +M+ + ED
Sbjct: 1041 RGTATYDGTAIAASVVNFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNA 1100
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
+ +T+ FLYK G CPKS+GFN A+LAG+P+ ++K ++ ++EA
Sbjct: 1101 DPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEA 1149
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
Length = 1360
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 40 PVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDEYVPPKAEVESESEHSSGEEELE-E 98
P T+ RR S + K + SDSE D GS+ E+ P E S E SSG + E E
Sbjct: 233 PKTQGSRRSSRQIKKRRVISDSESDI----GGSDVEFKPDTKEEGSSDEISSGVGDSESE 288
Query: 99 SVEDPTPSSSEAEVTPMKNGNKRGLSSKSGQPTKKPKLTAPSTPS---TPSFPVSDTSET 155
+ P + + + NG+ + SS+ P+ + T+ S+ + +F SE+
Sbjct: 289 GLNSPVKVARKRKRMVTGNGSLKRKSSRKETPSATKQATSISSETKNTLRAFSAPQNSES 348
Query: 156 TPSTSGAQD-------WSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTP 208
SG D W H ++L + D RR P HPD++ TLYVP +FL TP
Sbjct: 349 QAHVSGGGDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTP 408
Query: 209 CMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMK 253
M +WW IKSQNFD V+ +KVGKFYEL+HMDA+IG EL +MK
Sbjct: 409 GMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMK 453
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 5/146 (3%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1217 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1276
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E + +LF +
Sbjct: 1277 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLF--R 1334
Query: 507 FASLVKSGEKVDVEELQKALESVKSF 532
L VD E + K L +K
Sbjct: 1335 EVCLASERSTVDAEAVHKLLTLIKEL 1360
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 252 MKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVD 311
M+E +S +L Q+ + +++ P G FPD++ L ++ AFDH++A G I PKAG D
Sbjct: 875 MEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFD 934
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSN 370
+YD+ + +I+ E+ + YL Q GC T++Y + +Y LE+P + ++
Sbjct: 935 SDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGR--NRYQLEIPENFTTRNLPE 992
Query: 371 HQRVATKKKNVENYVT 386
+ + KK + Y T
Sbjct: 993 EYELKSTKKGCKRYWT 1008
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6
PE=1 SV=2
Length = 1324
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 161 GAQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQN 220
GA+D ++FL D DA RR P +Y+P+TLY+PP+F+KK T QWW K+++
Sbjct: 337 GARD--SEKFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKH 393
Query: 221 FDCVLFFKVGKFYELFHMDAVIGADELACSYMK 253
D V+FFK+GKFYELF MDA +GA EL YMK
Sbjct: 394 MDKVVFFKMGKFYELFEMDAHVGAKELDIQYMK 426
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T+DG IA LE F++ + C F+THYH ++ + P V+ +M+ +
Sbjct: 1166 RGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIG 1225
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH--NLRQLFIHK 506
G++ + FLY+L PG CPKS+G NVA LAG+P+ V++ + + EA + N R+ HK
Sbjct: 1226 GVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKT-DHK 1284
Query: 507 FASLVK 512
A+++K
Sbjct: 1285 LAAMIK 1290
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 274 TPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR 333
TP P++S +KYF++AFD EA ++G +IP G D+EYD ++ E ++ +L+
Sbjct: 851 TPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKHLK 910
Query: 334 TQCAHFG-CTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECR 390
Q G ++ Y K + Y+LEVP + +++ + + KK V Y TP +
Sbjct: 911 EQRKLLGDASINYVTVGKDE--YLLEVPESLSGSVPHDYE-LCSSKKGVSRYWTPTIK 965
>sp|Q9SMV7|MSH7_ARATH DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana GN=MSH7
PE=1 SV=1
Length = 1109
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 54/78 (69%)
Query: 170 YQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKV 229
+++L I DA+RR P P Y+ KTL++PP+ KK + Q+W++KS+ D VLFFKV
Sbjct: 231 FEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLFFKV 290
Query: 230 GKFYELFHMDAVIGADEL 247
GKFYEL+ +DA +G EL
Sbjct: 291 GKFYELYELDAELGHKEL 308
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA ++ + C +FATHYH + + P V ++M+ R+D
Sbjct: 936 RGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSD 995
Query: 449 ----GIDT-IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
G D +VFLY+L G CP+S+G VA +AGIP VV+ + A M+
Sbjct: 996 YQPRGCDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMK 1046
>sp|B9LB04|MUTS_CHLSY DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus
(strain ATCC 29364 / DSM 637 / Y-400-fl) GN=mutS PE=3
SV=1
Length = 966
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 390 RGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IAR +E ++GC T+FATHYH + RE P V +M+ +E
Sbjct: 792 RGTSTYDGMAIARAVVEYIHDHPRLGCRTLFATHYHELIALERELPRVRNYHMAAVE--- 848
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
DG +VFL++L PG +S+G +VAELAGIP +V++ + + +E
Sbjct: 849 RDG--RVVFLHELRPGGADRSYGIHVAELAGIPPEVIRRASALLADLE 894
>sp|A9WFZ9|MUTS_CHLAA DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus
(strain ATCC 29366 / DSM 635 / J-10-fl) GN=mutS PE=3
SV=1
Length = 966
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 390 RGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IAR +E ++GC T+FATHYH + RE P V +M+ +E
Sbjct: 792 RGTSTYDGMAIARAVVEYIHDHPRLGCRTLFATHYHELIALERELPRVRNYHMAAVE--- 848
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
DG +VFL++L PG +S+G +VAELAGIP +V++ + + +E
Sbjct: 849 RDG--RVVFLHELRPGGADRSYGIHVAELAGIPPEVIRRASALLADLE 894
>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=msh6 PE=1 SV=1
Length = 1254
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA L + IGCL F+THY S+ V M+ D++
Sbjct: 1107 RGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEK-- 1164
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
I + FLYKL GICPKS+G NVA +AG+PE V+ A ++E
Sbjct: 1165 -IRRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELE 1209
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 5/190 (2%)
Query: 57 IQSDSEPDDMLQ-DNGSE--DEYVPPKAEVESESEHSSGEEELEESVEDPTPSSSEAEVT 113
I SD E DD ++ D+ SE E P EVES E G + SV P P + +
Sbjct: 224 IVSDDESDDYVEPDHISEASSEASLPIDEVESMDEDVDGYSDHSVSVAAPIPKKESRKES 283
Query: 114 PMKNGNKRGLSSKSGQPTKKPKLTAPSTPSTPSFPVSDTSETTPSTSGAQDWSHNHYQFL 173
L S+ P+ +A T S + ++ + + ++ Y++L
Sbjct: 284 SNSLYESYRLGSQIASPSPSVSGSASPTKSNKNGVLNREEKRRQRMEAFKKENNERYEWL 343
Query: 174 HPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFY 233
+ DAD+ P+Y+P+TLY+PP P Q+W IK D V+FF+ GKFY
Sbjct: 344 L--DVRDADQNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFY 401
Query: 234 ELFHMDAVIG 243
EL+ DA IG
Sbjct: 402 ELYENDAAIG 411
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 245 DELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNI 304
D+L +M+ E TLL ++ P+M E L+ + AF+ ++AS G
Sbjct: 783 DQLREEFME----VAEGTLLGEIIQ--------SAPNMKEELEAWTRAFNWQKASEEGVF 830
Query: 305 IPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPS 361
P+ G + EYD ++ E+ L C+ + + K+ Y +EVPS
Sbjct: 831 EPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLNFKNIGKE-VYQVEVPS 886
>sp|Q03834|MSH6_YEAST DNA mismatch repair protein MSH6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSH6 PE=1 SV=1
Length = 1242
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 37/213 (17%)
Query: 49 SAKRVKSAIQSDSEPDDMLQDNGSEDEYVPPKAEVESESEHSSGEE----ELEESVEDPT 104
+AKR K + DSE D EDEY+P K + + + + + +E EL E D
Sbjct: 155 TAKRKKGKV-VDSESD--------EDEYLPDKNDGDEDDDIADDKEDIKGELAEDSGDDD 205
Query: 105 PSSSEAEVT--------------PMKNGNKRGLSSKSGQPTKKPKLTAPSTPSTPSFPVS 150
S AE T P R S K +P + P + + S PS
Sbjct: 206 DLISLAETTSKKKFSYNTSHSSSPFTRNISRDNSKKKSRPNQAPSRSYNPSHSQPS---- 261
Query: 151 DTSETTPSTSGAQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCM 210
T +S + YQ+L + DA RR P+Y+P+TLY+P K TP
Sbjct: 262 ----ATSKSSKFNKQNEERYQWLVDER--DAQRRPKSDPEYDPRTLYIPSSAWNKFTPFE 315
Query: 211 GQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIG 243
Q+W IKS+ +DC++FFK GKF+EL+ DA++
Sbjct: 316 KQYWEIKSKMWDCIVFFKKGKFFELYEKDALLA 348
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 390 RGTGTNDGCVIARVTLEKF-LQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RG ++DG IA L I L FATHY ++A + P V MS + D +
Sbjct: 1065 RGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVD---E 1121
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
+ FLYK++ G SFG +VA + GI ++++ A +E H R + A
Sbjct: 1122 ATRNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAADNLE--HTSRLVKERDLA 1179
Query: 509 SLVKSGEKVDV 519
+ +GE V V
Sbjct: 1180 ANNLNGEVVSV 1190
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 270 YESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQ 329
Y S P G + E +K + NAF+ ++A + I+P+ G D E+D+ MD I+ +E E+
Sbjct: 745 YISSFPEG----LVEAVKSWTNAFERQKAINENIIVPQRGFDIEFDKSMDRIQELEDELM 800
Query: 330 TYLRTQCAHFGCTVI-YSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPE 388
L T F C+ I Y ++ K+ Y +E+P SN ++A K + Y + E
Sbjct: 801 EILMTYRKQFKCSNIQYKDSGKEI--YTIEIPISATKNVPSNWVQMAA-NKTYKRYYSDE 857
Query: 389 CRGTGTN--DGCVIARVTLEKFLQIGCLTVFATHYHSV 424
R + + I + TLE+ L+ F HY+++
Sbjct: 858 VRALARSMAEAKEIHK-TLEEDLKNRLCQKFDAHYNTI 894
>sp|O65607|MSH3_ARATH DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana GN=MSH3 PE=1
SV=2
Length = 1081
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEP-NVAFEYMSYIEDKRN 447
RGT T+DG IA TL+ L + CL +F THY +A P +V ++SY+ +++
Sbjct: 900 RGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKD 959
Query: 448 DGI---DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQ 501
G D + +LYKLV G+C +SFGF VA+LA IP ++ ++A ++EA R+
Sbjct: 960 KGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRARE 1016
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 139 PSTPSTPSFPVSDTSETTPSTSGAQDWSHNHYQFLHPDHILDADRRSPKH--------PD 190
P +P+ PV+++S P S +S + + L DH+ A + PK PD
Sbjct: 17 PKSPTHEPNPVAESSTPPPKISATVSFSPSKRKLL-SDHLAAASPKKPKLSPHTQNPVPD 75
Query: 191 YNPKTLYV-------PPEFL------KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFH 237
N ++ P E++ +K TP Q +KS+ D VL +VG Y F
Sbjct: 76 PNLHQRFLQRFLEPSPEEYVPETSSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFG 135
Query: 238 MDAVIGADELA 248
DA I A L
Sbjct: 136 EDAEIAARVLG 146
>sp|Q4P6I8|MSH3_USTMA DNA mismatch repair protein MSH3 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=MSH3 PE=3 SV=1
Length = 1154
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGC--LTVFATHYHSVARRLREEPNVAFEYMSYIEDKRN 447
RGT + DG +A LE L +GC TVF THY +A R P++ +M++ + RN
Sbjct: 1012 RGTSSRDGYCLAAGVLEYLLTLGCPPNTVFITHYLQLASMQRRYPHLRNMHMAFTSNSRN 1071
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFI--- 504
+D I +YKL PGI SFG + A LA +P ++ +T++ + A+H R F+
Sbjct: 1072 -LLDPIHLVYKLRPGIA-HSFGIHAAHLARLPLQIIHSASTISSALYAKHTNRSAFLVLK 1129
Query: 505 HKFAS 509
H FA+
Sbjct: 1130 HAFAN 1134
>sp|A0Q809|MUTS_FRATN DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
novicida (strain U112) GN=mutS PE=3 SV=1
Length = 844
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF QIG T+FATHY + ++ PNV + E K
Sbjct: 693 RGTSTFDGLALAKACAEKFAQIGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 748
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + +L
Sbjct: 749 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQHL 797
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 4 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 62
>sp|B2SEQ6|MUTS_FRATM DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=mutS PE=3 SV=1
Length = 844
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF QIG T+FATHY + ++ PNV + E K
Sbjct: 693 RGTSTFDGLALAKACAEKFAQIGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 748
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + L
Sbjct: 749 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQQL 797
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 4 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 62
>sp|A4IXL2|MUTS_FRATW DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=mutS PE=3 SV=1
Length = 844
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF QIG T+FATHY + ++ PNV + E K
Sbjct: 693 RGTSTFDGLALAKACAEKFAQIGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 748
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + L
Sbjct: 749 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQQL 797
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 4 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 62
>sp|A7NPT5|MUTS_ROSCS DNA mismatch repair protein MutS OS=Roseiflexus castenholzii (strain
DSM 13941 / HLO8) GN=mutS PE=3 SV=1
Length = 1088
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
Query: 390 RGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IA+ +E ++GC T+FATHYH + R P + +M+ E
Sbjct: 899 RGTSTYDGMAIAQAVIEYIHNEPRLGCRTLFATHYHELTDLERTLPRLKNYHMAATE--- 955
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
DG +VFL++L PG +S+G +VAELAGIP+ V++ T + ++E R
Sbjct: 956 QDG--RVVFLHELRPGGADRSYGIHVAELAGIPQPVIRRATELLAELERR 1003
>sp|Q5NEV8|MUTS_FRATT DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=mutS PE=3 SV=1
Length = 857
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF QIG T+FATHY + ++ PNV + E K
Sbjct: 704 RGTSTFDGLALAKACAEKFAQIGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 759
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + L
Sbjct: 760 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQQL 808
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 15 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 73
>sp|Q14GB1|MUTS_FRAT1 DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=mutS PE=3 SV=1
Length = 857
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF QIG T+FATHY + ++ PNV + E K
Sbjct: 704 RGTSTFDGLALAKACAEKFAQIGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 759
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + L
Sbjct: 760 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQQL 808
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 15 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 73
>sp|A5UZK7|MUTS_ROSS1 DNA mismatch repair protein MutS OS=Roseiflexus sp. (strain RS-1)
GN=mutS PE=3 SV=1
Length = 1085
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
Query: 390 RGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IA+ +E ++GC T+FATHYH + R P + +M+ E
Sbjct: 895 RGTSTYDGMAIAQAVIEYIHNEPRLGCRTLFATHYHELTDLERTLPRLKNYHMAATE--- 951
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
DG +VFL++L PG +S+G +VAELAGIP+ V++ + + ++E R
Sbjct: 952 QDG--RVVFLHELRPGGADRSYGIHVAELAGIPQSVIRRASELLAELERR 999
>sp|Q2A5B5|MUTS_FRATH DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=mutS PE=3 SV=1
Length = 844
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF Q+G T+FATHY + ++ PNV + E K
Sbjct: 693 RGTSTFDGLALAKACAEKFAQMGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 748
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + L
Sbjct: 749 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQQL 797
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 4 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 62
>sp|A7N9Y6|MUTS_FRATF DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=mutS PE=3 SV=1
Length = 844
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF Q+G T+FATHY + ++ PNV + E K
Sbjct: 693 RGTSTFDGLALAKACAEKFAQMGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 748
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + L
Sbjct: 749 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQQL 797
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 4 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 62
>sp|Q0BNM7|MUTS_FRATO DNA mismatch repair protein MutS OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=mutS PE=3 SV=1
Length = 855
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A+ EKF Q+G T+FATHY + ++ PNV + E K
Sbjct: 704 RGTSTFDGLALAKACAEKFAQMGAFTLFATHYFELTELAKQYPNVCNIHFEAKEYK---- 759
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I F++K V G KS+G VA+LAGI +DV++ + +E + L
Sbjct: 760 -DNIYFMHKAVTGAAKKSYGIQVAKLAGISQDVLESAKQNLYNLEKKQQL 808
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
+ TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + GES
Sbjct: 15 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGES 73
>sp|P0CO93|MSH3_CRYNB DNA mismatch repair protein MSH3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=MSH3 PE=3 SV=1
Length = 1191
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL-REEPN-VAFEYMSYIEDKRN 447
RGT T DG IA TL +IGC T+F THY +VA+ L RE+P+ ++ +MS+ E +
Sbjct: 1033 RGTSTYDGIAIAYATLSHIAEIGCNTLFVTHYPTVAQDLAREKPDKISNWHMSFDEIQMP 1092
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
DG I FLY+L G+ SFG A LAG+P+ ++
Sbjct: 1093 DGGAEITFLYQLTRGLQEASFGVWCARLAGLPKPIL 1128
>sp|P0CO92|MSH3_CRYNJ DNA mismatch repair protein MSH3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=MSH3 PE=3 SV=1
Length = 1191
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL-REEPN-VAFEYMSYIEDKRN 447
RGT T DG IA TL +IGC T+F THY +VA+ L RE+P+ ++ +MS+ E +
Sbjct: 1033 RGTSTYDGIAIAYATLSHIAEIGCNTLFVTHYPTVAQDLAREKPDKISNWHMSFDEIQMP 1092
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
DG I FLY+L G+ SFG A LAG+P+ ++
Sbjct: 1093 DGGAEITFLYQLTRGLQEASFGVWCARLAGLPKPIL 1128
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum
GN=msh6 PE=3 SV=1
Length = 1260
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 169 HYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFK 228
Y FL +I DA+ HPDY+ +TL++P L K +P Q+W IKS+N+D V+FFK
Sbjct: 325 RYSFLV--NIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFK 382
Query: 229 VGKFYELFHMDAVIGADEL 247
GKFYEL+ DA IG +L
Sbjct: 383 KGKFYELYESDADIGHQQL 401
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 390 RGTGTNDGCVIARVTLEKF-LQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA L ++ + +FATHY S+A ++ YM+ D+
Sbjct: 1110 RGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLISTAYMTCHVDEE-- 1167
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
++FLYKL G+CP S+G +VA +AG+P +++ + QME L FIH
Sbjct: 1168 -AKKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKSTQMEKDSVLVS-FIHGTI 1225
Query: 509 SLVKSGEKVDVEELQKALESVKSFESQTKKDL 540
S K EK+ QK L + S T KDL
Sbjct: 1226 SRSKLVEKIVQSYKQKDLNQLIQL-SNTLKDL 1256
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 304 IIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY 363
++P G+ E+D+ + I+S+E+ +L Q AHF C I + K+ Y +E+P +
Sbjct: 828 VVPSKGLFLEFDQCLGNIQSLEQSFAKHLEEQKAHFKCNKIEYKHMGKE-IYQIEIPVAF 886
Query: 364 ASK 366
K
Sbjct: 887 TKK 889
>sp|Q1ZXH0|MSH3_DICDI DNA mismatch repair protein Msh3 OS=Dictyostelium discoideum GN=msh3
PE=3 SV=1
Length = 1428
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 390 RGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEP-NVAFEYMSYIEDKRN 447
RGT TNDG IA TL+ +++ C +F THY +A+ + P V +M Y+E+K++
Sbjct: 1262 RGTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLELQYPTQVGNFHMGYLEEKQD 1321
Query: 448 DG-----IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
I ++FLYKLV G S+G N+A LAG+P +V+
Sbjct: 1322 QQLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVI 1362
>sp|Q6CSR1|MSH3_KLULA DNA mismatch repair protein MSH3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=MSH3 PE=3 SV=1
Length = 1029
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 24/181 (13%)
Query: 367 AKSNHQRVATKKKNVENYVTPEC--------RGTGTNDGCVIARVTLEKFLQIG--C-LT 415
AKS Q ++ ++ N TP RGTGT+DG I+ L F+ + C L
Sbjct: 854 AKSTFQVEMSEVLHILNSSTPRSLLLLDEVGRGTGTHDGLSISFAILNYFVYLADNCPLV 913
Query: 416 VFATHYHSVARRLREEPNVAFEYMSYIEDKR-NDGIDTIVFLYKLVPGICPKSFGFNVAE 474
+F THY ++ + + +A +MSYIE + + ++FLYKLV G S+GFNVA+
Sbjct: 914 LFITHYSALCQI--DSKLIANYHMSYIEKHQPGEKWTNVIFLYKLVLGQAHNSYGFNVAK 971
Query: 475 LAGIPEDVVKFGTTVAFQ--MEARHNLRQLFIHKFASLVKSGEKVDVEELQK-ALESVKS 531
L+ IP +++ V+ + + ++H H F ++K+ ++V+ +L K AL+ +++
Sbjct: 972 LSNIPTEIINRAFEVSEEKILSSKH-------HNFLEIMKALKRVNERKLNKEALKKIQA 1024
Query: 532 F 532
F
Sbjct: 1025 F 1025
>sp|B9MJU0|MUTS_CALBD DNA mismatch repair protein MutS OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=mutS PE=3
SV=1
Length = 863
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 390 RGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IA LE +IG T+FATHYH + P V +Y D +
Sbjct: 690 RGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTELEERIPGVK----NYRVDVK 745
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA----RHNLRQL 502
+G I+FL K+V G C S+G +VA LAGIPE+V+K + Q+E R N+R+L
Sbjct: 746 EEG-KNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEEILKQLEEADINRKNIRKL 804
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACS 250
+++ TP M Q+ IK + DC+LFF++G FYE+F DA++ + EL +
Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIA 48
>sp|Q7UP05|MUTS_RHOBA DNA mismatch repair protein MutS OS=Rhodopirellula baltica (strain
SH1) GN=mutS PE=3 SV=1
Length = 891
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E QIG T+FATHYH +A P VA ++ E +
Sbjct: 715 RGTSTYDGLSLAWAITEHLHEQIGARTLFATHYHELAALQETLPRVANLSVAVKEWQ--- 771
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
D +VFL+++VPG KS+G VA LAGIP +V + V Q+EA H
Sbjct: 772 --DEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERAKDVLAQLEADHR 819
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSY 251
TP M Q+ K D +LFF++G FYELF DA + A L +
Sbjct: 2 TPMMRQYHEAKEACGDALLFFRMGDFYELFLDDAKVAAGILGLTL 46
>sp|B0TX99|MUTS_FRAP2 DNA mismatch repair protein MutS OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=mutS PE=3 SV=1
Length = 848
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEP---NVAFEYMSYIEDKR 446
RGT T DG +A+ EKF +IG +T+FATHY + + + P N+ FE Y
Sbjct: 693 RGTSTFDGLSLAKACAEKFAKIGAMTLFATHYFELTELVNQYPNTKNIHFEAKEY----- 747
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
D I F++K V G KS+G VA+LAGI +DV+
Sbjct: 748 ---KDNIYFMHKAVAGAAKKSYGIQVAKLAGISKDVL 781
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 206 QTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
TP + Q+ IKSQ D +LF+++G FYELF DA A+ L + G+S
Sbjct: 7 HTPMIQQYLKIKSQYPDILLFYRMGDFYELFFDDAKNAAELLDITLTARGKSNGDS 62
>sp|P13705|MSH3_MOUSE DNA mismatch repair protein Msh3 OS=Mus musculus GN=Msh3 PE=2 SV=3
Length = 1091
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 20/157 (12%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEP-NVAFEYMSYI----E 443
RGT T+DG IA TLE F++ + LT+F THY V + P V +M ++ E
Sbjct: 933 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDE 992
Query: 444 DKRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K++ G D++ FLY++ GI +S+G NVA+LA +P +V++ + ++E +
Sbjct: 993 SKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVS 1052
Query: 499 LRQLFIHKFASL-----VKS----GEKVDVEELQKAL 526
LR+ + F L VK +K+++EE+Q +L
Sbjct: 1053 LRRKRLECFTDLWMTHSVKDLHTWADKLEMEEIQTSL 1089
>sp|P26359|MSH3_SCHPO DNA mismatch repair protein msh3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=msh3 PE=3 SV=1
Length = 993
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVA---RRLREEPNVAFEYMSYI--- 442
RGT T DG I+ L Q I +F TH+ S+ RR E + +M Y+
Sbjct: 842 RGTSTIDGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILERRF--EGQLRCFHMGYLKSK 899
Query: 443 EDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH-NLRQ 501
ED +I FLYKLVPG+ KS+G NVA +AGIP ++ T ++ E +H N R+
Sbjct: 900 EDFETSVSQSISFLYKLVPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHRNARK 959
Query: 502 -LFIHKFASL--VKSGEKVDVEEL 522
+FI K A L + + E++D + L
Sbjct: 960 NVFIRKVAKLLMILNAEEIDFKRL 983
>sp|Q0UXL8|MSH3_PHANO DNA mismatch repair protein MSH3 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=MSH3 PE=3 SV=3
Length = 1119
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFE--YMSYIEDKR 446
RGT T DG IA L+ ++ +G LT+F THY +AR L++ N + +MS+ E
Sbjct: 979 RGTSTFDGVAIAEAVLDYVIRDVGALTLFITHYQHLAR-LQDRFNGELKNVHMSFEE--- 1034
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL--FI 504
DG +VFLY++ G +S+G NVA LA +PE V++ + ++E + ++
Sbjct: 1035 RDGGKEVVFLYEVAEGTSHRSYGLNVARLAKVPEKVIETAEVKSSELEESMGISRVANMA 1094
Query: 505 HKFASLVKSGEKVDVEELQKALESV 529
L++ G + +E L + +E +
Sbjct: 1095 RMVKGLLEDGGEEGLERLIEGIEQL 1119
>sp|Q1DQ73|MSH3_COCIM DNA mismatch repair protein MSH3 OS=Coccidioides immitis (strain RS)
GN=MSH3 PE=3 SV=2
Length = 1125
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFE--YMSYIEDKR 446
RGT T+DG IA+ L+ ++ I LT+F THY ++ R PN +M + E +
Sbjct: 981 RGTSTHDGVAIAQAVLDYMVRDIRSLTLFITHYQHLSNLARTFPNGELRNVHMKFTESGK 1040
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL--FI 504
DG D I FLY++ G+ +S+G NVA LA IP V+ T + ++E + + L
Sbjct: 1041 -DGQD-ITFLYEVGEGVAHRSYGLNVARLANIPSSVLDVAYTKSAELEEKIKRKNLEGIA 1098
Query: 505 HKFASLVKSGEKVDVEELQKALESVKSF 532
+ ++++GE + E +++ L V+
Sbjct: 1099 KGLSRVLENGEN-EGELMERLLSEVEQL 1125
>sp|Q7NLT8|MUTS_GLOVI DNA mismatch repair protein MutS OS=Gloeobacter violaceus (strain
PCC 7421) GN=mutS PE=3 SV=1
Length = 890
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 376 TKKKNVENYVTPEC--------RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVAR 426
T+ N+ N+ TP RGT T DG IA E I C T+FATHYH
Sbjct: 746 TETANILNHATPRSLVLLDEIGRGTATFDGLAIAWAVAEYLASHIRCRTIFATHYHE--- 802
Query: 427 RLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFG 486
L E +V +Y + + D IVFL+++ PG +S+G V LAG+P VV
Sbjct: 803 -LNELASVVSGVANY-QVTVQELADRIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVARA 860
Query: 487 TTVAFQME 494
TV Q+E
Sbjct: 861 RTVLAQVE 868
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP + Q+ +K+Q+ C+L +++G FYE F DA I + EL
Sbjct: 22 TPMLQQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSREL 62
>sp|A7HC64|MUTS_ANADF DNA mismatch repair protein MutS OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=mutS PE=3 SV=1
Length = 882
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA E Q+GC T+FATHYH + RE P V ++ E
Sbjct: 709 RGTSTFDGVSIAWAVAEHLHDQVGCRTLFATHYHELQDLARERPAVRNLTVAVREVG--- 765
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
D +VFL KLV G +S+G VA+LAG+P +V+ + +EA
Sbjct: 766 --DRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEA 810
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSY 251
TP M Q+ K++ D +LFF++G FYELF DA+ ++ L +
Sbjct: 8 TPMMRQYLETKARYPDALLFFRLGDFYELFFEDALTASEALQITL 52
>sp|B3W9W4|MUTS_LACCB DNA mismatch repair protein MutS OS=Lactobacillus casei (strain
BL23) GN=mutS PE=3 SV=1
Length = 857
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 14/111 (12%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYH---SVARRLREEPNVAFEYMSYIED 444
RGT T DG +A+ +E FL + T+F+THYH S++ L + NV ++ +E+
Sbjct: 691 RGTATYDGMALAQAIIE-FLHDHVHAKTLFSTHYHELTSLSDSLAKLKNV---HVGAVEE 746
Query: 445 KRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
N +VFL+K++PG KS+G +VA+LAG+P D++ T+ Q+EA
Sbjct: 747 HGN-----LVFLHKMMPGPADKSYGIHVAKLAGLPADLLARADTILKQLEA 792
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 206 QTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACS 250
+TP M Q+ IK+Q D LF+++G FYELF+ DA+ GA L +
Sbjct: 7 ETPMMQQYNEIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELT 51
>sp|Q035Z2|MUTS_LACC3 DNA mismatch repair protein MutS OS=Lactobacillus casei (strain
ATCC 334) GN=mutS PE=3 SV=1
Length = 857
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 14/111 (12%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYH---SVARRLREEPNVAFEYMSYIED 444
RGT T DG +A+ +E FL + T+F+THYH S++ L + NV ++ +E+
Sbjct: 691 RGTATYDGMALAQAIIE-FLHDHVHAKTLFSTHYHELTSLSDSLAKLKNV---HVGAVEE 746
Query: 445 KRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
N +VFL+K++PG KS+G +VA+LAG+P D++ T+ Q+EA
Sbjct: 747 HGN-----LVFLHKMMPGPADKSYGIHVAKLAGLPADLLARADTILKQLEA 792
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 206 QTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACS 250
+TP M Q+ IK+Q D LF+++G FYELF+ DA+ GA L +
Sbjct: 7 ETPMMQQYNEIKAQYPDAFLFYRIGDFYELFNDDAIKGAQLLELT 51
>sp|Q1MRT4|MUTS_LAWIP DNA mismatch repair protein MutS OS=Lawsonia intracellularis
(strain PHE/MN1-00) GN=mutS PE=3 SV=1
Length = 893
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 390 RGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG +A E + G T+FATHYH + EE M+
Sbjct: 721 RGTSTFDGLALAWAVAEDLVCKDHDGVRTLFATHYHELTAL--EEKLTGVHTMTIAIRHW 778
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH 497
ND +VFLY+L+PG +S+G VA LAG+P+ V++ + Q+E H
Sbjct: 779 ND---ELVFLYRLIPGPADRSYGIEVARLAGVPQSVIQRAKIILTQLEQTH 826
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACS 250
+ TP + Q+ +IKS D +LF+++G FYELF DA A EL +
Sbjct: 7 RITPMLEQYLSIKSNYPDTLLFYRMGDFYELFFEDAETAARELQIA 52
>sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4
Length = 1137
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEY-MSYI----E 443
RGT T+DG IA TLE F++ + LT+F THY V + + Y M ++ E
Sbjct: 979 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDE 1038
Query: 444 DKRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K + G D + FLY++ GI +S+G NVA+LA +P +++K + ++E N
Sbjct: 1039 SKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLIN 1098
Query: 499 LRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQT 536
++ + FA L + ++LQK E E+QT
Sbjct: 1099 TKRKRLKYFAKLWTMH---NAQDLQKWTEEFNMEETQT 1133
>sp|B2S2S5|MUTS_TREPS DNA mismatch repair protein MutS OS=Treponema pallidum subsp.
pallidum (strain SS14) GN=mutS PE=3 SV=1
Length = 900
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA+ E L + T+FATHYH ++R P + + +E
Sbjct: 709 RGTATEDGLSIAQAVSEYLLHHVRAKTLFATHYHELSRL--AHPQLEHLKLDVLETD--- 763
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
+TIVFL K+ PG C S+G VA LAG+PE V+ + Q++ R
Sbjct: 764 --NTIVFLKKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQR 809
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESG 256
L TP M Q+ I++Q+ D VLFF++G FYE+F DA+ + L + K +G
Sbjct: 4 LASDTPLMRQYHAIRAQHPDAVLFFRLGDFYEMFDSDALHVSTLLGLTLTKRNG 57
>sp|O83348|MUTS_TREPA DNA mismatch repair protein MutS OS=Treponema pallidum (strain
Nichols) GN=mutS PE=3 SV=1
Length = 900
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA+ E L + T+FATHYH ++R P + + +E
Sbjct: 709 RGTATEDGLSIAQAVSEYLLHHVRAKTLFATHYHELSRL--AHPQLEHLKLDVLETD--- 763
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
+TIVFL K+ PG C S+G VA LAG+PE V+ + Q++ R
Sbjct: 764 --NTIVFLKKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQR 809
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESG 256
L TP M Q+ I++Q+ D VLFF++G FYE+F DA+ + L + K +G
Sbjct: 4 LASDTPLMRQYHAIRAQHPDAVLFFRLGDFYEMFDSDALHVSTLLGLTLTKRNG 57
>sp|Q59Y41|MSH3_CANAL DNA mismatch repair protein MSH3 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=MSH3 PE=3 SV=1
Length = 1037
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYHSVARRLREEPN--VAFEYMSYIEDK 445
RGTGT DG +A L+ ++ L +F THY S+ +E PN V +M Y E K
Sbjct: 883 RGTGTIDGISLAYSILKYLIESEFKPLVLFITHYPSIHVLEQEYPNQLVVNYHMGYQEIK 942
Query: 446 RND--GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL- 502
N I I+FLY L G+ S+G NVA+LAGI D++K V+ ++++ L++
Sbjct: 943 NNTPGEIPEIIFLYNLCRGVVNNSYGLNVAKLAGISHDIIKQAYRVSEKVKSDIELKEYW 1002
Query: 503 -FIHKFASLVKSG 514
F H +K G
Sbjct: 1003 KFAHSLNKALKEG 1015
>sp|A9GIM9|MUTS_SORC5 DNA mismatch repair protein MutS OS=Sorangium cellulosum (strain So
ce56) GN=mutS PE=3 SV=1
Length = 918
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 390 RGTGTNDGCVIARVTLEK-FLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA E F IGC +FATHYH + P +A +Y R
Sbjct: 745 RGTSTYDGLAIAWAVAEHLFDAIGCRALFATHYHELTELSARAPGIA----NYSVAAREH 800
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
G D ++FL+KL G +S+G VA LAG+PE V+ + +E
Sbjct: 801 G-DDVIFLHKLEAGPASRSYGVAVARLAGVPEGVLARARAILATLE 845
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 200 PEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVI 242
P KK TP M Q+ K+ + D +LFF++G FYE+F+ DAV+
Sbjct: 7 PAARKKLTPVMRQYEDAKALHPDAILFFRMGDFYEMFNDDAVL 49
>sp|A0LG76|MUTS_SYNFM DNA mismatch repair protein MutS OS=Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB) GN=mutS PE=3 SV=1
Length = 889
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 329 QTYLRTQCAHFGCTVIYSEAQKK--QKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVT 386
Q L H G V SEA + + S ++ +S + N+ ++ T
Sbjct: 632 QAALIVLMGHIGSFVPASEAHIGLVDRIFTRVGASDDLARGRSTFMVEMQETANILHHAT 691
Query: 387 PEC--------RGTGTNDGCVIARVT---LEKFLQIGCLTVFATHYHSVARRLREEPNVA 435
P RGT T DG IA L F + G T+FATHYH + R P V
Sbjct: 692 PRSLIILDEIGRGTSTYDGLSIAWAVAEHLHDFQEKGIKTLFATHYHELTELARSRPRVR 751
Query: 436 FEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
+ I + + + I+F +KLV G +S+G VA LAG+PE+V + Q+E+
Sbjct: 752 -NFNVAIREWQQE----ILFFHKLVQGGASRSYGIQVARLAGLPEEVTGRAREILQQLES 806
Query: 496 RH 497
H
Sbjct: 807 GH 808
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVI--GADELACS 250
+ K TP M Q+ IK + D +L +++G FYE+F DAV G E+A +
Sbjct: 1 MNKITPMMQQYLEIKEKYPDALLLYRMGDFYEMFMDDAVTASGLLEIALT 50
>sp|B4UCY7|MUTS_ANASK DNA mismatch repair protein MutS OS=Anaeromyxobacter sp. (strain K)
GN=mutS PE=3 SV=1
Length = 882
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA E + GC T+FATHYH + RE P V ++ R
Sbjct: 710 RGTSTFDGVSIAWAVAEHLHDVTGCRTLFATHYHELQDLARERPAVRNLTVAV----REV 765
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
G D +VFL KLV G +S+G VA+LAG+P +V+ + +EA
Sbjct: 766 G-DRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEA 811
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 200 PEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255
PE + TP M Q+ K++ D +LFF++G FYE+F DA+ ++ L + S
Sbjct: 2 PEIAQAHTPMMRQYLETKARYPDAILFFRLGDFYEMFFEDALTASEALQITLTARS 57
>sp|B1KPS7|MUTS_SHEWM DNA mismatch repair protein MutS OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=mutS PE=3 SV=1
Length = 858
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 329 QTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYAS-----KAKSNHQRVATKKKNVEN 383
Q L T AH GC Y AQ V + ++ + +S T+ N+ +
Sbjct: 630 QVALITLMAHIGC---YVPAQSATIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILH 686
Query: 384 YVTPEC--------RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNV 434
TP+ RGT T DG +A E Q I +T+FATHY + + NV
Sbjct: 687 NATPKSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQKIEAMTLFATHYFELTQLPELISNV 746
Query: 435 AFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
A ++ IE DTIVF++ + G KS+G VA LAG+P V+ +E
Sbjct: 747 ANVHLDAIEHG-----DTIVFMHAVQDGAASKSYGLQVAALAGVPNPVILAAKHKLHHLE 801
Query: 495 AR--HNLRQ 501
+R HN +Q
Sbjct: 802 SRDNHNTQQ 810
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGE 260
L+K TP M Q+ T+K++N D +LF+++G FYELF+ DA ++ L S G+
Sbjct: 9 LEKHTPMMRQYLTLKAENPDVLLFYRMGDFYELFYDDAKKASELLGISLTARGKSGGD 66
>sp|B8JA66|MUTS_ANAD2 DNA mismatch repair protein MutS OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=mutS PE=3 SV=1
Length = 882
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA E + GC T+FATHYH + RE P V ++ R
Sbjct: 710 RGTSTFDGVSIAWAVAEHLHDVTGCRTLFATHYHELQDLARERPAVRNLTVAV----REV 765
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
G D +VFL KLV G +S+G VA+LAG+P +V+ + +EA
Sbjct: 766 G-DRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEA 811
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 200 PEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255
PE + TP M Q+ K++ D +LFF++G FYE+F DA+ ++ L + S
Sbjct: 2 PEIAQAHTPMMRQYLETKARYPDAILFFRLGDFYEMFFEDALTASEALQITLTARS 57
>sp|Q5QUB6|MUTS_IDILO DNA mismatch repair protein MutS OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=mutS PE=3 SV=2
Length = 871
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 390 RGTGTNDGCVIARVTLEKF-LQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A + Q+ CLT+FATHY + E P ++ D +
Sbjct: 703 RGTSTYDGLSLAWSCADYLSRQLQCLTLFATHYFELTELAEELPATVNVHV----DAKEH 758
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
G DTI FL+K+ PG +SFG VA+LAG+PE V+ ++E H+
Sbjct: 759 G-DTIAFLHKVSPGAASQSFGLQVAKLAGVPEHVIHKAKQKLSELEHTHH 807
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 200 PEFLKKQ----TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255
PEF KQ TP M Q+ IK+++ D +LF+++G FYELF DA A L S
Sbjct: 2 PEFSDKQIQSHTPMMQQYLRIKAEHADMLLFYRMGDFYELFFEDAKRSAQLLDISLTARG 61
Query: 256 GCTGE 260
GE
Sbjct: 62 QSNGE 66
>sp|Q2IIJ3|MUTS_ANADE DNA mismatch repair protein MutS OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=mutS PE=3 SV=1
Length = 882
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 390 RGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA E + GC T+FATHYH + RE P V ++ R
Sbjct: 710 RGTSTFDGVSIAWAVAEHLHDVTGCRTLFATHYHELQDLARERPAVRNLTVAV----REV 765
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
G D +VFL KLV G +S+G VA+LAG+P +V+ + +EA
Sbjct: 766 G-DRVVFLRKLVQGGASRSYGIEVAKLAGLPAEVLARAREILKNLEA 811
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 200 PEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255
PE + TP M Q+ K++ D +LFF++G FYE+F DA+ ++ L + S
Sbjct: 2 PEIAQAHTPMMRQYLETKARYPDAILFFRLGDFYEMFFEDALTASEALQITLTARS 57
>sp|Q759V4|MSH3_ASHGO DNA mismatch repair protein MSH3 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MSH3
PE=3 SV=1
Length = 1032
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 10/114 (8%)
Query: 390 RGTGTNDGCVIARVTLEKFLQI--GC-LTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGTGT+DG I+ L F+++ C L +F THY S+ P + +MSYIE+KR
Sbjct: 879 RGTGTHDGISISYALLRYFIELHNACPLILFITHYASLGSI--RSPILGNYHMSYIEEKR 936
Query: 447 -NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV----KFGTTVAFQMEA 495
+ ++VFLYKL G S+G NVA+LA I ++ K T + +ME+
Sbjct: 937 PGENWPSVVFLYKLKEGRAHNSYGLNVAKLADIQTGIINRAYKISTMLKQEMES 990
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,777,586
Number of Sequences: 539616
Number of extensions: 10311725
Number of successful extensions: 53905
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 1509
Number of HSP's that attempted gapping in prelim test: 43460
Number of HSP's gapped (non-prelim): 8282
length of query: 577
length of database: 191,569,459
effective HSP length: 123
effective length of query: 454
effective length of database: 125,196,691
effective search space: 56839297714
effective search space used: 56839297714
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)