Query psy13263
Match_columns 577
No_of_seqs 412 out of 2490
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 00:18:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217|consensus 100.0 2.1E-58 4.5E-63 517.3 25.3 239 274-527 869-1123(1125)
2 COG0249 MutS Mismatch repair A 100.0 5.5E-55 1.2E-59 500.2 22.3 247 258-525 567-833 (843)
3 TIGR01070 mutS1 DNA mismatch r 100.0 2.2E-50 4.8E-55 464.8 18.9 213 270-496 561-784 (840)
4 KOG0218|consensus 100.0 8.2E-51 1.8E-55 442.2 13.9 252 239-501 765-1035(1070)
5 PRK05399 DNA mismatch repair p 100.0 7.1E-49 1.5E-53 453.8 19.4 213 270-496 575-799 (854)
6 PF00488 MutS_V: MutS domain V 100.0 1.3E-48 2.9E-53 391.3 13.7 211 271-495 11-234 (235)
7 cd03286 ABC_MSH6_euk MutS6 hom 100.0 6.6E-43 1.4E-47 346.8 17.1 204 274-486 2-218 (218)
8 KOG0220|consensus 100.0 5.9E-43 1.3E-47 382.1 10.5 253 272-541 592-866 (867)
9 KOG0219|consensus 100.0 1.4E-42 3.1E-47 383.7 12.2 214 271-498 614-839 (902)
10 cd03287 ABC_MSH3_euk MutS3 hom 100.0 3.8E-41 8.2E-46 335.1 17.0 206 272-486 1-222 (222)
11 PRK00409 recombination and DNA 100.0 7.3E-40 1.6E-44 375.6 22.9 279 192-494 218-515 (782)
12 KOG0221|consensus 100.0 1.8E-40 4E-45 357.5 9.4 230 260-504 560-804 (849)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 7.5E-39 1.6E-43 318.1 18.2 208 274-493 2-221 (222)
14 TIGR01069 mutS2 MutS2 family p 100.0 3.6E-38 7.8E-43 361.0 22.4 285 192-497 213-513 (771)
15 cd03284 ABC_MutS1 MutS1 homolo 100.0 8.7E-37 1.9E-41 302.0 17.2 203 274-490 2-216 (216)
16 cd03281 ABC_MSH5_euk MutS5 hom 100.0 5.2E-36 1.1E-40 295.9 16.4 196 274-478 2-213 (213)
17 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.1E-34 2.3E-39 285.2 15.0 191 274-477 2-203 (204)
18 smart00534 MUTSac ATPase domai 100.0 9.9E-34 2.1E-38 273.0 16.5 175 302-490 3-185 (185)
19 COG1193 Mismatch repair ATPase 100.0 2E-31 4.2E-36 302.7 11.2 202 270-492 291-501 (753)
20 cd03283 ABC_MutS-like MutS-lik 100.0 1.1E-28 2.4E-33 241.4 16.2 190 274-478 2-199 (199)
21 cd03243 ABC_MutS_homologs The 100.0 5.5E-28 1.2E-32 235.4 15.7 191 274-478 2-202 (202)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 4.5E-28 9.7E-33 236.0 15.0 190 273-478 1-200 (200)
23 cd03227 ABC_Class2 ABC-type Cl 99.7 8.8E-17 1.9E-21 151.9 9.4 143 274-442 2-156 (162)
24 TIGR01070 mutS1 DNA mismatch r 98.7 2.4E-09 5.1E-14 125.4 -0.8 51 206-256 1-51 (840)
25 PRK05399 DNA mismatch repair p 98.6 7.1E-09 1.5E-13 121.7 -0.8 54 204-257 6-59 (854)
26 PF01624 MutS_I: MutS domain I 98.5 6.8E-09 1.5E-13 93.3 -2.6 54 207-260 1-54 (113)
27 COG0249 MutS Mismatch repair A 98.4 7E-08 1.5E-12 112.8 1.8 54 203-256 3-56 (843)
28 KOG0219|consensus 98.1 5.3E-07 1.1E-11 102.6 -1.6 199 234-497 632-841 (902)
29 KOG0217|consensus 97.7 7.7E-07 1.7E-11 103.2 -7.4 211 36-255 68-297 (1125)
30 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0075 1.6E-07 56.3 7.3 116 292-428 19-146 (157)
31 PF00488 MutS_V: MutS domain V 96.5 0.0012 2.6E-08 66.9 1.7 87 237-328 33-120 (235)
32 cd03214 ABC_Iron-Siderophores_ 96.0 0.0099 2.1E-07 57.0 5.2 52 366-426 110-162 (180)
33 cd03222 ABC_RNaseL_inhibitor T 96.0 0.019 4.2E-07 55.8 7.2 114 293-427 20-137 (177)
34 cd03238 ABC_UvrA The excision 96.0 0.012 2.5E-07 57.3 5.6 47 372-427 108-154 (176)
35 COG4586 ABC-type uncharacteriz 95.7 0.026 5.7E-07 58.9 6.9 129 291-430 43-226 (325)
36 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.015 3.3E-07 59.9 5.1 61 357-426 143-203 (254)
37 cd03246 ABCC_Protease_Secretio 95.5 0.043 9.3E-07 52.3 7.5 123 292-427 22-161 (173)
38 cd03217 ABC_FeS_Assembly ABC-t 95.4 0.023 4.9E-07 55.5 5.3 52 366-426 117-168 (200)
39 cd03216 ABC_Carb_Monos_I This 95.4 0.044 9.4E-07 52.0 7.0 114 292-426 20-146 (163)
40 cd03228 ABCC_MRP_Like The MRP 95.4 0.04 8.7E-07 52.4 6.7 122 292-427 22-160 (171)
41 cd03247 ABCC_cytochrome_bd The 95.4 0.044 9.6E-07 52.4 7.0 122 292-427 22-162 (178)
42 cd03223 ABCD_peroxisomal_ALDP 95.3 0.019 4.1E-07 54.6 4.2 120 292-427 21-153 (166)
43 KOG0220|consensus 95.2 0.0073 1.6E-07 69.1 1.2 32 248-279 622-653 (867)
44 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.046 1E-06 50.9 6.4 110 292-426 20-131 (144)
45 KOG0218|consensus 95.2 0.0073 1.6E-07 69.1 1.0 86 235-325 818-904 (1070)
46 cd03230 ABC_DR_subfamily_A Thi 95.1 0.037 8E-07 52.8 5.5 122 292-426 20-159 (173)
47 cd03229 ABC_Class3 This class 95.0 0.052 1.1E-06 51.9 6.2 56 362-426 109-165 (178)
48 COG0396 sufC Cysteine desulfur 95.0 0.036 7.9E-07 56.5 5.2 50 371-429 162-211 (251)
49 cd03250 ABCC_MRP_domain1 Domai 94.9 0.033 7.1E-07 54.3 4.6 51 369-427 143-193 (204)
50 COG2884 FtsE Predicted ATPase 94.5 0.078 1.7E-06 52.9 6.1 60 358-429 142-204 (223)
51 cd03268 ABC_BcrA_bacitracin_re 94.4 0.22 4.8E-06 48.5 9.2 54 365-427 138-191 (208)
52 PRK10584 putative ABC transpor 94.4 0.21 4.5E-06 49.4 9.0 59 360-427 153-212 (228)
53 PRK13543 cytochrome c biogenes 94.3 0.099 2.1E-06 51.5 6.5 53 365-426 149-201 (214)
54 cd03258 ABC_MetN_methionine_tr 94.3 0.079 1.7E-06 52.6 5.9 57 361-426 148-205 (233)
55 cd03269 ABC_putative_ATPase Th 94.3 0.079 1.7E-06 51.8 5.8 53 365-426 140-192 (210)
56 COG4152 ABC-type uncharacteriz 94.3 0.072 1.6E-06 55.1 5.4 47 371-426 148-194 (300)
57 COG1131 CcmA ABC-type multidru 94.3 0.096 2.1E-06 54.8 6.6 67 353-428 135-203 (293)
58 cd03215 ABC_Carb_Monos_II This 94.3 0.072 1.6E-06 51.2 5.3 52 366-426 117-168 (182)
59 cd03226 ABC_cobalt_CbiO_domain 94.2 0.23 4.9E-06 48.4 8.6 52 366-426 139-190 (205)
60 cd03213 ABCG_EPDR ABCG transpo 94.1 0.2 4.4E-06 48.7 8.1 55 366-429 124-180 (194)
61 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.09 1.9E-06 51.8 5.5 57 361-426 139-196 (220)
62 cd03239 ABC_SMC_head The struc 94.0 0.16 3.4E-06 49.3 7.0 50 370-428 115-164 (178)
63 cd03262 ABC_HisP_GlnQ_permease 93.9 0.32 7E-06 47.4 9.1 53 365-426 147-199 (213)
64 PRK00409 recombination and DNA 93.9 0.052 1.1E-06 64.1 4.0 57 237-294 318-376 (782)
65 cd03232 ABC_PDR_domain2 The pl 93.8 0.1 2.3E-06 50.6 5.4 49 366-423 121-169 (192)
66 cd03265 ABC_DrrA DrrA is the A 93.5 0.13 2.9E-06 50.6 5.7 58 361-427 139-197 (220)
67 COG3910 Predicted ATPase [Gene 93.3 0.14 3E-06 51.2 5.3 52 366-426 141-192 (233)
68 cd03256 ABC_PhnC_transporter A 93.3 0.43 9.4E-06 47.4 9.0 53 365-426 156-209 (241)
69 cd03261 ABC_Org_Solvent_Resist 93.2 0.49 1.1E-05 47.1 9.3 57 361-426 144-201 (235)
70 PRK11124 artP arginine transpo 93.2 0.14 3.1E-06 51.1 5.4 53 365-426 153-205 (242)
71 PRK10247 putative ABC transpor 93.1 0.44 9.6E-06 47.3 8.7 58 361-427 145-203 (225)
72 PRK11300 livG leucine/isoleuci 93.0 0.51 1.1E-05 47.5 9.2 53 365-426 165-218 (255)
73 TIGR01188 drrA daunorubicin re 92.9 0.22 4.8E-06 51.9 6.5 52 366-426 137-188 (302)
74 cd03296 ABC_CysA_sulfate_impor 92.9 0.2 4.2E-06 50.2 5.8 56 362-426 145-201 (239)
75 PRK09536 btuD corrinoid ABC tr 92.9 0.15 3.3E-06 55.8 5.4 48 370-426 156-203 (402)
76 cd03219 ABC_Mj1267_LivG_branch 92.8 0.23 4.9E-06 49.4 6.1 54 365-427 155-208 (236)
77 TIGR03864 PQQ_ABC_ATP ABC tran 92.8 0.24 5.1E-06 49.5 6.2 58 361-427 140-198 (236)
78 smart00534 MUTSac ATPase domai 92.7 0.085 1.8E-06 51.1 2.9 44 250-293 2-46 (185)
79 TIGR03740 galliderm_ABC gallid 92.6 0.24 5.3E-06 48.9 6.1 53 365-426 136-188 (223)
80 cd03266 ABC_NatA_sodium_export 92.6 0.17 3.7E-06 49.7 4.8 53 365-426 148-200 (218)
81 PRK13539 cytochrome c biogenes 92.6 0.16 3.6E-06 49.7 4.8 58 361-427 135-192 (207)
82 PRK13540 cytochrome c biogenes 92.6 0.47 1E-05 46.2 7.9 60 360-428 134-193 (200)
83 COG4555 NatA ABC-type Na+ tran 92.5 0.12 2.5E-06 52.2 3.6 31 292-322 22-52 (245)
84 PRK13632 cbiO cobalt transport 92.5 0.46 1E-05 48.6 8.1 57 361-426 150-207 (271)
85 PRK11629 lolD lipoprotein tran 92.5 0.23 5E-06 49.4 5.7 54 365-427 157-211 (233)
86 COG4133 CcmA ABC-type transpor 92.4 0.29 6.3E-06 48.8 6.2 155 248-422 29-190 (209)
87 cd03278 ABC_SMC_barmotin Barmo 92.4 0.47 1E-05 46.6 7.7 48 370-427 134-181 (197)
88 cd03301 ABC_MalK_N The N-termi 92.3 0.19 4.2E-06 49.1 4.8 52 366-426 143-195 (213)
89 PRK09493 glnQ glutamine ABC tr 92.2 0.22 4.7E-06 49.8 5.2 52 366-426 149-200 (240)
90 PRK10619 histidine/lysine/argi 92.2 0.23 4.9E-06 50.3 5.3 53 366-427 165-217 (257)
91 PRK14250 phosphate ABC transpo 92.1 0.66 1.4E-05 46.6 8.6 52 366-426 144-196 (241)
92 PRK13541 cytochrome c biogenes 92.1 0.2 4.2E-06 48.6 4.6 58 361-427 131-188 (195)
93 cd03281 ABC_MSH5_euk MutS5 hom 92.1 0.079 1.7E-06 52.8 1.9 86 236-326 18-104 (213)
94 PRK10575 iron-hydroxamate tran 92.0 0.79 1.7E-05 46.7 9.1 57 361-426 155-212 (265)
95 cd03276 ABC_SMC6_euk Eukaryoti 92.0 0.35 7.6E-06 47.5 6.3 50 369-426 129-180 (198)
96 cd03295 ABC_OpuCA_Osmoprotecti 91.8 0.32 6.9E-06 48.7 5.9 53 365-426 147-200 (242)
97 COG1120 FepC ABC-type cobalami 91.8 0.27 5.8E-06 51.0 5.4 122 292-429 22-206 (258)
98 cd03218 ABC_YhbG The ABC trans 91.8 0.47 1E-05 47.0 7.0 56 362-426 142-197 (232)
99 PRK13536 nodulation factor exp 91.7 0.34 7.4E-06 51.8 6.3 52 366-426 185-236 (340)
100 COG1119 ModF ABC-type molybden 91.7 0.56 1.2E-05 48.4 7.4 44 369-423 187-234 (257)
101 cd03286 ABC_MSH6_euk MutS6 hom 91.6 0.095 2.1E-06 52.7 1.8 87 237-328 20-107 (218)
102 TIGR01288 nodI ATP-binding ABC 91.4 0.42 9E-06 49.9 6.4 53 365-426 147-199 (303)
103 PRK13635 cbiO cobalt transport 91.3 0.73 1.6E-05 47.6 8.1 53 365-426 152-205 (279)
104 PRK13637 cbiO cobalt transport 91.1 1.1 2.3E-05 46.6 9.0 53 365-426 156-209 (287)
105 cd03234 ABCG_White The White s 91.1 0.59 1.3E-05 46.3 6.8 59 362-429 152-212 (226)
106 PRK10908 cell division protein 91.0 0.34 7.4E-06 47.8 5.0 53 366-427 150-202 (222)
107 PRK13537 nodulation ABC transp 90.9 0.49 1.1E-05 49.6 6.4 53 366-427 151-203 (306)
108 PRK13548 hmuV hemin importer A 90.9 0.44 9.6E-06 48.4 5.9 48 370-426 157-205 (258)
109 TIGR03265 PhnT2 putative 2-ami 90.6 0.84 1.8E-05 49.1 8.0 49 369-426 150-199 (353)
110 KOG0062|consensus 90.4 0.34 7.5E-06 54.5 4.8 117 297-425 105-258 (582)
111 PRK11144 modC molybdate transp 90.3 1.2 2.7E-05 47.6 8.9 57 361-426 136-193 (352)
112 PRK13634 cbiO cobalt transport 90.1 0.67 1.5E-05 48.1 6.5 52 366-426 158-210 (290)
113 cd03285 ABC_MSH2_euk MutS2 hom 90.1 0.13 2.7E-06 51.7 1.1 85 237-326 20-105 (222)
114 PRK13545 tagH teichoic acids e 89.9 0.96 2.1E-05 51.6 7.9 48 370-426 160-207 (549)
115 cd03274 ABC_SMC4_euk Eukaryoti 89.9 1.6 3.4E-05 43.5 8.7 49 371-429 149-197 (212)
116 TIGR03522 GldA_ABC_ATP gliding 89.7 0.66 1.4E-05 48.4 6.1 54 366-429 146-200 (301)
117 TIGR01186 proV glycine betaine 89.7 0.75 1.6E-05 49.8 6.6 55 364-426 140-194 (363)
118 COG4619 ABC-type uncharacteriz 89.6 0.61 1.3E-05 46.1 5.3 63 360-430 140-203 (223)
119 PRK10070 glycine betaine trans 89.6 1.6 3.4E-05 47.9 9.1 53 365-426 176-229 (400)
120 PRK13639 cbiO cobalt transport 89.5 0.53 1.2E-05 48.4 5.1 53 365-426 149-201 (275)
121 TIGR02203 MsbA_lipidA lipid A 89.2 1.2 2.6E-05 50.1 8.2 61 357-429 473-535 (571)
122 TIGR02142 modC_ABC molybdenum 89.2 0.66 1.4E-05 49.7 5.8 53 365-426 143-196 (354)
123 PRK11176 lipid transporter ATP 89.2 1.2 2.6E-05 50.4 8.1 48 370-429 497-546 (582)
124 cd01120 RecA-like_NTPases RecA 88.9 1.1 2.4E-05 40.4 6.3 21 302-322 3-23 (165)
125 cd03287 ABC_MSH3_euk MutS3 hom 88.7 0.23 5E-06 50.1 1.8 98 238-346 22-121 (222)
126 TIGR03796 NHPM_micro_ABC1 NHPM 88.7 1.5 3.2E-05 51.0 8.6 48 370-429 632-679 (710)
127 cd03264 ABC_drug_resistance_li 87.8 0.82 1.8E-05 44.6 5.0 55 362-426 139-193 (211)
128 cd03233 ABC_PDR_domain1 The pl 87.6 1.8 3.8E-05 42.4 7.1 61 360-429 125-188 (202)
129 PRK15064 ABC transporter ATP-b 87.3 2.5 5.3E-05 47.6 9.0 29 292-320 339-367 (530)
130 cd03284 ABC_MutS1 MutS1 homolo 87.2 0.36 7.9E-06 48.2 2.2 84 237-326 21-105 (216)
131 COG1134 TagH ABC-type polysacc 87.1 1.6 3.4E-05 45.1 6.6 29 292-320 47-75 (249)
132 PRK09183 transposase/IS protei 86.9 1.8 3.9E-05 44.5 7.1 95 300-421 104-205 (259)
133 TIGR02858 spore_III_AA stage I 86.8 1.8 3.9E-05 45.1 7.1 45 369-429 192-236 (270)
134 COG0488 Uup ATPase components 86.6 1.1 2.4E-05 51.0 5.8 44 371-426 171-214 (530)
135 PLN03073 ABC transporter F fam 86.5 2.6 5.6E-05 49.7 8.9 47 369-427 643-689 (718)
136 COG1129 MglA ABC-type sugar tr 86.2 3.5 7.6E-05 46.6 9.3 62 356-430 150-214 (500)
137 COG0488 Uup ATPase components 86.2 1.4 2.9E-05 50.3 6.2 46 371-428 457-502 (530)
138 KOG0059|consensus 85.7 2.6 5.7E-05 50.8 8.6 80 353-441 697-778 (885)
139 PRK10636 putative ABC transpor 85.6 2 4.4E-05 49.7 7.4 29 292-320 332-360 (638)
140 PRK13657 cyclic beta-1,2-gluca 85.6 2.1 4.5E-05 48.7 7.4 61 357-429 475-537 (588)
141 TIGR02204 MsbA_rel ABC transpo 85.6 2.7 5.9E-05 47.4 8.3 61 357-429 480-542 (576)
142 TIGR01271 CFTR_protein cystic 85.2 1.9 4.2E-05 54.7 7.5 54 365-427 560-613 (1490)
143 COG1122 CbiO ABC-type cobalt t 85.1 2.9 6.3E-05 42.7 7.4 60 358-428 143-205 (235)
144 PRK15439 autoinducer 2 ABC tra 84.8 4 8.6E-05 45.8 9.1 52 366-426 153-204 (510)
145 PRK10790 putative multidrug tr 84.6 3.4 7.4E-05 47.0 8.5 60 357-428 480-541 (592)
146 cd03283 ABC_MutS-like MutS-lik 84.3 0.83 1.8E-05 45.1 3.1 40 238-279 18-57 (199)
147 COG1125 OpuBA ABC-type proline 84.3 2.4 5.3E-05 44.4 6.4 56 362-426 144-200 (309)
148 PRK11147 ABC transporter ATPas 84.3 3.7 8.1E-05 47.4 8.8 49 366-426 453-501 (635)
149 COG1193 Mismatch repair ATPase 84.2 0.31 6.7E-06 57.4 -0.0 69 246-340 316-386 (753)
150 PRK10938 putative molybdenum t 83.8 4.7 0.0001 44.8 9.1 52 366-426 148-199 (490)
151 COG4618 ArpD ABC-type protease 83.8 3 6.6E-05 47.2 7.3 49 371-429 490-539 (580)
152 KOG0221|consensus 83.7 0.34 7.4E-06 55.2 0.0 43 237-279 589-631 (849)
153 cd03277 ABC_SMC5_euk Eukaryoti 83.5 2.4 5.2E-05 42.2 6.0 44 370-422 147-192 (213)
154 cd03282 ABC_MSH4_euk MutS4 hom 83.2 0.28 6.1E-06 48.7 -0.8 54 238-291 20-74 (204)
155 cd00009 AAA The AAA+ (ATPases 83.0 2.2 4.8E-05 37.1 4.9 22 300-321 21-42 (151)
156 PRK08181 transposase; Validate 82.9 3 6.5E-05 43.4 6.6 97 299-422 107-209 (269)
157 PRK08116 hypothetical protein; 82.8 3.8 8.2E-05 42.5 7.3 96 301-422 117-221 (268)
158 TIGR03797 NHPM_micro_ABC2 NHPM 82.3 5.6 0.00012 46.2 9.2 61 357-429 592-652 (686)
159 COG1117 PstB ABC-type phosphat 82.3 1.5 3.3E-05 44.7 4.0 175 248-442 34-226 (253)
160 TIGR02881 spore_V_K stage V sp 81.7 4.3 9.3E-05 41.4 7.1 117 301-434 45-165 (261)
161 cd03237 ABC_RNaseL_inhibitor_d 81.3 3.1 6.8E-05 42.3 5.9 60 359-427 121-181 (246)
162 TIGR01193 bacteriocin_ABC ABC- 81.2 5.1 0.00011 46.7 8.4 47 371-429 629-676 (708)
163 TIGR01846 type_I_sec_HlyB type 81.1 5.1 0.00011 46.6 8.3 47 370-428 610-658 (694)
164 TIGR03608 L_ocin_972_ABC putat 80.9 3.5 7.5E-05 40.0 5.9 58 361-427 142-199 (206)
165 COG2401 ABC-type ATPase fused 80.9 2.5 5.4E-05 47.0 5.2 166 245-429 407-575 (593)
166 TIGR03375 type_I_sec_LssB type 80.6 6 0.00013 46.0 8.7 49 369-429 617-667 (694)
167 cd03298 ABC_ThiQ_thiamine_tran 80.3 3.6 7.9E-05 40.1 5.8 53 365-426 140-193 (211)
168 TIGR02982 heterocyst_DevA ABC 79.8 3.8 8.3E-05 40.4 5.9 54 366-428 154-208 (220)
169 COG0497 RecN ATPase involved i 79.8 11 0.00024 43.2 10.1 63 353-430 438-502 (557)
170 TIGR01257 rim_protein retinal- 79.6 2.6 5.7E-05 55.2 5.7 54 365-428 1073-1126(2272)
171 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.4 4.3 9.3E-05 39.7 6.1 56 362-426 149-205 (218)
172 cd03243 ABC_MutS_homologs The 79.4 0.75 1.6E-05 45.0 0.7 42 236-279 20-61 (202)
173 cd03290 ABCC_SUR1_N The SUR do 79.1 3.5 7.7E-05 40.5 5.4 53 366-426 153-206 (218)
174 COG4608 AppF ABC-type oligopep 78.8 6.6 0.00014 41.1 7.3 125 292-430 33-178 (268)
175 PRK10771 thiQ thiamine transpo 78.7 4.3 9.3E-05 40.4 5.8 57 361-426 137-194 (232)
176 cd03279 ABC_sbcCD SbcCD and ot 78.6 3.1 6.7E-05 41.1 4.8 49 372-429 152-200 (213)
177 PRK06526 transposase; Provisio 78.5 5.3 0.00011 41.1 6.6 96 300-422 100-201 (254)
178 PRK10789 putative multidrug tr 78.4 6.2 0.00013 44.9 7.7 28 293-320 336-363 (569)
179 COG3845 ABC-type uncharacteriz 78.4 9.9 0.00021 42.9 9.0 98 308-429 108-208 (501)
180 TIGR01166 cbiO cobalt transpor 78.2 2.8 6E-05 40.3 4.2 51 365-424 139-189 (190)
181 TIGR01257 rim_protein retinal- 77.7 2.9 6.2E-05 54.9 5.2 55 365-428 2082-2136(2272)
182 cd03257 ABC_NikE_OppD_transpor 77.5 5 0.00011 39.4 5.9 53 365-426 157-210 (228)
183 PRK11160 cysteine/glutathione 77.4 8.4 0.00018 43.9 8.4 29 292-320 360-388 (574)
184 TIGR00634 recN DNA repair prot 77.2 9.6 0.00021 43.6 8.8 96 372-490 463-561 (563)
185 PRK09580 sufC cysteine desulfu 77.2 4.9 0.00011 40.1 5.9 53 366-427 158-210 (248)
186 PRK08727 hypothetical protein; 77.2 10 0.00022 38.2 8.1 92 301-421 44-135 (233)
187 cd03225 ABC_cobalt_CbiO_domain 77.1 4.9 0.00011 39.1 5.7 57 362-427 143-199 (211)
188 TIGR01192 chvA glucan exporter 77.0 7.9 0.00017 44.3 8.1 27 293-319 356-382 (585)
189 cd03224 ABC_TM1139_LivF_branch 76.9 5.8 0.00013 38.9 6.2 53 365-426 144-196 (222)
190 PRK11264 putative amino-acid A 76.9 5.4 0.00012 40.0 6.0 53 365-426 156-208 (250)
191 TIGR00957 MRP_assoc_pro multi 76.8 4.5 9.7E-05 51.6 6.6 60 361-428 768-828 (1522)
192 cd03267 ABC_NatA_like Similar 76.7 4.8 0.0001 40.3 5.6 52 366-426 166-218 (236)
193 PRK10869 recombination and rep 76.7 11 0.00024 43.2 9.1 97 372-491 453-552 (553)
194 cd03280 ABC_MutS2 MutS2 homolo 76.5 0.88 1.9E-05 44.5 0.2 32 248-279 29-60 (200)
195 TIGR02324 CP_lyasePhnL phospho 76.3 5.3 0.00011 39.3 5.7 51 367-426 163-213 (224)
196 cd03292 ABC_FtsE_transporter F 76.0 6 0.00013 38.5 6.0 53 365-426 148-200 (214)
197 CHL00131 ycf16 sulfate ABC tra 75.9 4.8 0.0001 40.4 5.4 58 361-427 159-216 (252)
198 PRK11231 fecE iron-dicitrate t 75.9 5.7 0.00012 40.1 5.9 58 360-426 145-202 (255)
199 PRK06921 hypothetical protein; 75.8 7.4 0.00016 40.3 6.8 97 300-421 119-224 (266)
200 TIGR01277 thiQ thiamine ABC tr 75.7 6 0.00013 38.8 5.9 57 361-426 136-193 (213)
201 TIGR00960 3a0501s02 Type II (G 75.7 5.5 0.00012 39.0 5.6 57 361-426 146-202 (216)
202 KOG0927|consensus 75.7 4.8 0.0001 45.9 5.7 28 292-319 95-122 (614)
203 COG1136 SalX ABC-type antimicr 75.6 6.6 0.00014 40.1 6.2 61 360-430 149-211 (226)
204 PRK11614 livF leucine/isoleuci 75.5 5.8 0.00012 39.5 5.8 55 365-428 149-204 (237)
205 TIGR00958 3a01208 Conjugate Tr 75.3 8.2 0.00018 45.3 7.8 46 370-428 634-680 (711)
206 COG1116 TauB ABC-type nitrate/ 75.3 14 0.00031 38.2 8.6 60 363-430 140-199 (248)
207 cd03259 ABC_Carb_Solutes_like 75.0 6.2 0.00013 38.5 5.8 56 362-426 139-195 (213)
208 TIGR01184 ntrCD nitrate transp 74.9 6.1 0.00013 39.4 5.8 53 365-426 126-179 (230)
209 cd03297 ABC_ModC_molybdenum_tr 74.7 6.2 0.00013 38.7 5.7 56 362-426 140-196 (214)
210 PRK13643 cbiO cobalt transport 74.7 5.9 0.00013 41.1 5.8 52 366-426 157-208 (288)
211 TIGR02673 FtsE cell division A 74.6 6.4 0.00014 38.4 5.7 56 362-426 146-201 (214)
212 TIGR00955 3a01204 The Eye Pigm 74.6 5.4 0.00012 46.0 6.0 64 358-430 171-236 (617)
213 TIGR02769 nickel_nikE nickel i 74.5 6 0.00013 40.3 5.7 54 365-427 162-216 (265)
214 COG4988 CydD ABC-type transpor 74.5 17 0.00036 41.8 9.6 87 325-428 433-521 (559)
215 TIGR02857 CydD thiol reductant 74.4 8.8 0.00019 43.0 7.5 27 293-319 343-369 (529)
216 PRK13640 cbiO cobalt transport 74.3 5.4 0.00012 41.2 5.4 58 361-427 151-209 (282)
217 TIGR02211 LolD_lipo_ex lipopro 74.3 6.7 0.00015 38.5 5.8 57 362-427 150-207 (221)
218 PLN03232 ABC transporter C fam 74.2 6.4 0.00014 50.2 7.0 59 358-428 745-806 (1495)
219 TIGR02880 cbbX_cfxQ probable R 74.0 9.6 0.00021 39.7 7.2 114 301-434 61-182 (284)
220 PRK13649 cbiO cobalt transport 74.0 6.2 0.00013 40.5 5.7 53 365-426 157-209 (280)
221 PLN03130 ABC transporter C fam 73.8 6.7 0.00015 50.4 7.0 157 248-428 644-806 (1622)
222 TIGR02770 nickel_nikD nickel i 73.7 6.3 0.00014 39.2 5.5 52 366-426 138-190 (230)
223 TIGR03410 urea_trans_UrtE urea 73.7 6.6 0.00014 38.8 5.7 53 365-426 143-196 (230)
224 PRK13647 cbiO cobalt transport 73.7 6 0.00013 40.7 5.5 53 365-426 150-202 (274)
225 PRK13645 cbiO cobalt transport 73.5 6 0.00013 40.9 5.5 53 365-426 162-215 (289)
226 PRK11701 phnK phosphonate C-P 73.4 6.4 0.00014 39.8 5.5 59 360-427 158-217 (258)
227 PF13304 AAA_21: AAA domain; P 73.3 4.3 9.4E-05 38.2 4.1 41 373-425 259-302 (303)
228 PRK13641 cbiO cobalt transport 73.2 6.9 0.00015 40.5 5.8 52 366-426 158-209 (287)
229 PRK06893 DNA replication initi 73.1 7.5 0.00016 39.0 5.9 92 302-422 43-134 (229)
230 PTZ00243 ABC transporter; Prov 72.9 5.8 0.00013 50.8 6.1 55 365-428 794-848 (1560)
231 PRK13651 cobalt transporter AT 72.7 6.7 0.00014 41.3 5.7 56 365-429 177-233 (305)
232 cd03235 ABC_Metallic_Cations A 72.7 7 0.00015 38.1 5.5 53 365-426 144-196 (213)
233 PRK10895 lipopolysaccharide AB 72.6 7.2 0.00016 38.9 5.7 56 365-429 149-205 (241)
234 cd03294 ABC_Pro_Gly_Bertaine T 72.6 7.3 0.00016 39.9 5.8 53 365-426 172-225 (269)
235 PRK09984 phosphonate/organopho 72.5 7.1 0.00015 39.6 5.7 52 366-426 165-217 (262)
236 PRK07952 DNA replication prote 72.4 12 0.00026 38.4 7.3 103 301-426 102-211 (244)
237 PRK13538 cytochrome c biogenes 72.3 6.3 0.00014 38.4 5.0 55 365-428 141-195 (204)
238 TIGR02315 ABC_phnC phosphonate 72.3 7.7 0.00017 38.6 5.8 53 365-426 157-210 (243)
239 PRK09544 znuC high-affinity zi 72.2 7.5 0.00016 39.5 5.8 53 365-426 132-185 (251)
240 PLN03140 ABC transporter G fam 72.1 6.6 0.00014 50.0 6.4 60 360-428 1026-1087(1470)
241 PRK13644 cbiO cobalt transport 72.1 7.5 0.00016 40.0 5.8 54 365-427 148-201 (274)
242 TIGR01069 mutS2 MutS2 family p 72.0 0.88 1.9E-05 54.0 -1.2 46 248-293 323-370 (771)
243 COG1245 Predicted ATPase, RNas 72.0 4 8.8E-05 45.8 3.9 67 356-430 458-524 (591)
244 PRK12377 putative replication 71.9 15 0.00032 37.9 7.8 100 301-426 104-212 (248)
245 TIGR01978 sufC FeS assembly AT 71.8 7.4 0.00016 38.7 5.5 58 361-427 152-209 (243)
246 PRK11248 tauB taurine transpor 71.8 7.5 0.00016 39.5 5.7 54 365-427 140-194 (255)
247 CHL00181 cbbX CbbX; Provisiona 71.8 12 0.00026 39.2 7.3 115 301-434 62-183 (287)
248 KOG0743|consensus 71.6 22 0.00049 39.8 9.5 135 302-480 239-387 (457)
249 PRK06835 DNA replication prote 71.6 10 0.00022 40.6 6.8 97 299-421 184-288 (329)
250 PRK10253 iron-enterobactin tra 71.0 7.9 0.00017 39.4 5.6 60 361-429 151-212 (265)
251 TIGR02323 CP_lyasePhnK phospho 70.9 8.2 0.00018 38.8 5.7 58 361-427 156-214 (253)
252 PRK11247 ssuB aliphatic sulfon 70.7 8.2 0.00018 39.5 5.7 53 365-426 145-198 (257)
253 cd01124 KaiC KaiC is a circadi 70.5 11 0.00025 35.4 6.3 46 371-424 95-142 (187)
254 cd03245 ABCC_bacteriocin_expor 70.4 6.1 0.00013 38.7 4.5 53 365-427 152-204 (220)
255 COG2274 SunT ABC-type bacterio 70.4 15 0.00033 43.4 8.4 49 369-429 625-675 (709)
256 TIGR00968 3a0106s01 sulfate AB 70.1 9.1 0.0002 38.3 5.7 56 362-426 139-195 (237)
257 PRK10418 nikD nickel transport 70.0 8.9 0.00019 38.8 5.7 53 365-426 152-205 (254)
258 TIGR03005 ectoine_ehuA ectoine 69.9 8.6 0.00019 38.7 5.6 52 366-426 159-211 (252)
259 PRK10419 nikE nickel transport 69.7 8.6 0.00019 39.3 5.6 59 359-426 157-216 (268)
260 PRK08939 primosomal protein Dn 69.5 16 0.00035 38.7 7.7 102 301-428 159-269 (306)
261 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 69.3 9.3 0.0002 38.0 5.6 53 365-426 154-206 (224)
262 cd03300 ABC_PotA_N PotA is an 69.2 9.6 0.00021 37.9 5.7 57 361-426 138-195 (232)
263 cd03275 ABC_SMC1_euk Eukaryoti 69.2 6.1 0.00013 39.9 4.3 50 371-429 177-226 (247)
264 PRK13633 cobalt transporter AT 69.0 8.6 0.00019 39.6 5.4 52 366-426 157-209 (280)
265 PTZ00293 thymidine kinase; Pro 68.9 13 0.00028 37.6 6.4 135 301-462 7-156 (211)
266 PRK11831 putative ABC transpor 68.9 9.8 0.00021 38.9 5.8 52 366-426 156-208 (269)
267 PRK05642 DNA replication initi 68.7 16 0.00034 36.9 7.2 92 302-422 49-140 (234)
268 TIGR03873 F420-0_ABC_ATP propo 68.6 11 0.00023 38.2 5.9 52 366-426 150-201 (256)
269 smart00382 AAA ATPases associa 68.6 5.6 0.00012 33.9 3.4 21 301-321 5-25 (148)
270 PRK13638 cbiO cobalt transport 68.6 10 0.00022 38.8 5.8 53 365-426 148-200 (271)
271 PRK04296 thymidine kinase; Pro 68.4 15 0.00033 35.8 6.7 71 371-462 78-159 (190)
272 PRK14249 phosphate ABC transpo 67.8 9.9 0.00021 38.2 5.5 58 361-428 155-212 (251)
273 TIGR01189 ccmA heme ABC export 67.8 8.5 0.00018 37.3 4.8 54 360-422 134-187 (198)
274 cd03251 ABCC_MsbA MsbA is an e 67.7 8.8 0.00019 38.0 5.0 53 365-427 150-202 (234)
275 cd03240 ABC_Rad50 The catalyti 67.5 11 0.00024 37.2 5.6 53 368-428 136-189 (204)
276 cd03270 ABC_UvrA_I The excisio 66.8 13 0.00029 37.1 6.1 46 373-427 159-204 (226)
277 PRK11308 dppF dipeptide transp 66.6 10 0.00023 40.3 5.6 57 362-427 163-220 (327)
278 PRK13631 cbiO cobalt transport 66.6 10 0.00022 40.2 5.6 60 361-429 184-244 (320)
279 PRK13648 cbiO cobalt transport 66.4 9.7 0.00021 38.9 5.2 53 365-426 154-207 (269)
280 PF01695 IstB_IS21: IstB-like 66.4 6.3 0.00014 38.3 3.6 41 373-422 110-150 (178)
281 PF13173 AAA_14: AAA domain 66.4 20 0.00042 32.4 6.6 91 301-425 5-102 (128)
282 PF09818 ABC_ATPase: Predicted 66.2 9 0.00019 42.8 5.1 25 247-271 244-268 (448)
283 PRK15112 antimicrobial peptide 66.2 11 0.00023 38.6 5.4 53 365-426 161-214 (267)
284 cd03231 ABC_CcmA_heme_exporter 66.2 9.6 0.00021 37.1 4.9 53 362-423 134-186 (201)
285 PRK13650 cbiO cobalt transport 66.2 11 0.00024 38.9 5.5 59 359-426 146-205 (279)
286 cd03260 ABC_PstB_phosphate_tra 65.9 13 0.00028 36.7 5.8 51 366-426 154-204 (227)
287 COG3839 MalK ABC-type sugar tr 65.6 9.7 0.00021 41.1 5.1 55 361-426 141-198 (338)
288 PRK13642 cbiO cobalt transport 65.6 11 0.00024 38.7 5.4 52 367-427 154-206 (277)
289 PRK08084 DNA replication initi 65.6 21 0.00045 36.0 7.2 93 301-422 48-141 (235)
290 cd03271 ABC_UvrA_II The excisi 65.4 12 0.00025 38.9 5.5 47 372-427 191-237 (261)
291 PRK15056 manganese/iron transp 65.4 12 0.00026 38.3 5.7 52 366-426 155-206 (272)
292 cd03299 ABC_ModC_like Archeal 65.4 13 0.00028 37.2 5.7 57 361-426 137-194 (235)
293 PRK11607 potG putrescine trans 65.3 11 0.00024 41.1 5.6 57 362-426 158-214 (377)
294 cd03369 ABCC_NFT1 Domain 2 of 65.3 11 0.00023 36.8 5.0 58 359-426 131-188 (207)
295 PRK14273 phosphate ABC transpo 65.1 11 0.00025 37.8 5.4 51 366-426 163-213 (254)
296 cd03254 ABCC_Glucan_exporter_l 65.1 11 0.00023 37.2 5.0 52 366-427 152-203 (229)
297 PRK14267 phosphate ABC transpo 64.9 14 0.0003 37.1 5.9 56 361-426 157-212 (253)
298 cd03249 ABC_MTABC3_MDL1_MDL2 M 64.8 11 0.00024 37.4 5.1 52 366-427 152-203 (238)
299 PRK15093 antimicrobial peptide 64.7 12 0.00026 39.7 5.7 59 361-428 166-225 (330)
300 PRK14245 phosphate ABC transpo 64.6 12 0.00026 37.5 5.4 52 365-426 158-209 (250)
301 PRK14244 phosphate ABC transpo 64.3 14 0.0003 37.2 5.7 52 365-426 161-212 (251)
302 cd03248 ABCC_TAP TAP, the Tran 64.2 12 0.00026 36.9 5.2 53 365-427 162-214 (226)
303 PRK11153 metN DL-methionine tr 64.1 13 0.00027 39.9 5.7 53 365-426 152-205 (343)
304 PRK00411 cdc6 cell division co 64.0 44 0.00095 35.7 9.8 21 300-320 57-77 (394)
305 PRK14258 phosphate ABC transpo 63.9 14 0.00031 37.5 5.8 52 366-426 163-215 (261)
306 PRK11000 maltose/maltodextrin 63.7 12 0.00026 40.4 5.5 57 361-426 141-198 (369)
307 PRK14254 phosphate ABC transpo 63.6 14 0.00029 38.4 5.7 52 366-427 193-244 (285)
308 PRK13646 cbiO cobalt transport 63.6 13 0.00028 38.5 5.5 52 366-426 158-210 (286)
309 cd03253 ABCC_ATM1_transporter 63.5 13 0.00029 36.7 5.4 56 362-427 146-201 (236)
310 PRK14268 phosphate ABC transpo 63.4 13 0.00029 37.6 5.5 55 362-426 163-217 (258)
311 cd03288 ABCC_SUR2 The SUR doma 63.3 13 0.00027 37.8 5.2 58 360-427 163-220 (257)
312 cd03236 ABC_RNaseL_inhibitor_d 63.1 13 0.00028 38.1 5.4 50 368-426 154-203 (255)
313 PRK14253 phosphate ABC transpo 63.0 15 0.00033 36.8 5.7 51 366-426 158-208 (249)
314 PRK15079 oligopeptide ABC tran 63.0 14 0.0003 39.5 5.7 59 361-428 169-228 (331)
315 TIGR00956 3a01205 Pleiotropic 62.9 12 0.00025 47.6 5.9 154 249-423 791-963 (1394)
316 PRK13652 cbiO cobalt transport 62.9 14 0.00031 37.9 5.7 52 366-426 150-202 (277)
317 cd03252 ABCC_Hemolysin The ABC 62.9 12 0.00026 37.2 4.9 51 367-427 152-202 (237)
318 TIGR01187 potA spermidine/putr 62.9 13 0.00029 39.3 5.5 53 365-426 112-165 (325)
319 TIGR03771 anch_rpt_ABC anchore 62.9 15 0.00033 36.3 5.7 53 365-426 125-177 (223)
320 PRK13549 xylose transporter AT 62.8 15 0.00032 41.1 6.2 52 366-426 418-469 (506)
321 PRK14270 phosphate ABC transpo 62.6 14 0.00031 37.0 5.5 51 366-426 160-210 (251)
322 PRK14240 phosphate transporter 62.5 14 0.0003 37.1 5.3 55 362-426 155-209 (250)
323 PF00004 AAA: ATPase family as 62.1 24 0.00051 30.8 6.2 19 302-320 2-20 (132)
324 PRK10851 sulfate/thiosulfate t 62.1 15 0.00033 39.5 5.9 57 362-427 145-202 (353)
325 COG4138 BtuD ABC-type cobalami 62.0 25 0.00055 35.3 6.8 43 372-423 151-193 (248)
326 PRK09473 oppD oligopeptide tra 61.9 14 0.00031 39.3 5.6 58 361-427 169-227 (330)
327 PRK14269 phosphate ABC transpo 61.4 16 0.00035 36.6 5.6 52 365-426 154-205 (246)
328 PRK14261 phosphate ABC transpo 61.4 15 0.00033 36.9 5.5 57 360-426 156-212 (253)
329 PRK14259 phosphate ABC transpo 61.4 14 0.00031 37.7 5.4 51 366-426 167-217 (269)
330 PRK03695 vitamin B12-transport 61.3 17 0.00037 36.7 5.7 49 372-429 152-201 (248)
331 PRK14274 phosphate ABC transpo 60.9 15 0.00033 37.1 5.4 51 366-426 168-218 (259)
332 PRK13546 teichoic acids export 60.7 15 0.00033 37.7 5.4 52 366-426 156-207 (264)
333 PRK15177 Vi polysaccharide exp 60.7 15 0.00033 36.2 5.2 22 248-269 14-35 (213)
334 TIGR03411 urea_trans_UrtD urea 60.5 16 0.00035 36.4 5.4 57 360-426 150-206 (242)
335 cd03263 ABC_subfamily_A The AB 60.4 18 0.00039 35.4 5.6 57 360-426 140-196 (220)
336 PRK09452 potA putrescine/sperm 60.4 17 0.00038 39.5 6.0 59 359-426 150-209 (375)
337 PRK14086 dnaA chromosomal repl 60.3 18 0.0004 42.1 6.4 96 302-421 318-419 (617)
338 cd03244 ABCC_MRP_domain2 Domai 60.1 16 0.00035 35.8 5.2 53 365-427 151-203 (221)
339 PRK11022 dppD dipeptide transp 60.0 16 0.00034 38.9 5.5 54 365-427 165-219 (326)
340 PRK13636 cbiO cobalt transport 59.9 18 0.00038 37.4 5.7 52 366-426 154-206 (283)
341 PRK14236 phosphate transporter 59.8 18 0.00038 37.1 5.7 56 361-426 176-231 (272)
342 PRK09700 D-allose transporter 59.8 18 0.00039 40.5 6.2 53 366-427 422-474 (510)
343 TIGR00618 sbcc exonuclease Sbc 59.1 14 0.0003 45.5 5.4 49 372-429 979-1027(1042)
344 PRK14265 phosphate ABC transpo 59.0 16 0.00035 37.6 5.2 57 361-427 169-225 (274)
345 KOG0057|consensus 58.9 21 0.00046 41.0 6.4 126 292-430 372-554 (591)
346 TIGR02633 xylG D-xylose ABC tr 58.7 19 0.00042 40.1 6.1 52 366-426 416-467 (500)
347 PRK14251 phosphate ABC transpo 58.6 18 0.00038 36.4 5.3 51 366-426 160-210 (251)
348 PRK11650 ugpC glycerol-3-phosp 58.6 20 0.00043 38.7 6.0 61 360-429 141-203 (356)
349 cd03291 ABCC_CFTR1 The CFTR su 58.5 17 0.00038 37.8 5.4 52 366-426 172-223 (282)
350 PTZ00361 26 proteosome regulat 58.4 25 0.00055 39.2 6.9 22 300-321 219-240 (438)
351 cd03273 ABC_SMC2_euk Eukaryoti 58.3 11 0.00023 38.2 3.7 50 370-429 187-236 (251)
352 PRK14242 phosphate transporter 58.0 18 0.00039 36.3 5.3 51 366-426 162-212 (253)
353 CHL00176 ftsH cell division pr 57.7 31 0.00067 40.4 7.8 21 300-320 218-238 (638)
354 PRK14255 phosphate ABC transpo 57.3 19 0.00042 36.1 5.4 52 365-426 160-211 (252)
355 COG0419 SbcC ATPase involved i 57.3 15 0.00032 44.5 5.3 48 373-429 843-890 (908)
356 PRK15439 autoinducer 2 ABC tra 57.3 20 0.00043 40.3 5.9 52 367-427 417-468 (510)
357 COG1124 DppF ABC-type dipeptid 57.3 23 0.0005 36.8 5.8 61 357-429 145-209 (252)
358 PRK14266 phosphate ABC transpo 56.7 20 0.00043 35.9 5.4 52 366-427 159-210 (250)
359 PRK14239 phosphate transporter 56.5 19 0.00042 36.1 5.2 52 365-426 160-211 (252)
360 PRK00149 dnaA chromosomal repl 56.4 22 0.00047 39.4 6.0 98 301-422 151-254 (450)
361 PRK14235 phosphate transporter 56.4 19 0.00042 36.7 5.3 56 361-426 171-226 (267)
362 PRK15134 microcin C ABC transp 56.3 20 0.00042 40.4 5.7 53 366-427 438-491 (529)
363 PRK14247 phosphate ABC transpo 56.2 22 0.00048 35.6 5.6 52 365-426 158-209 (250)
364 PRK13409 putative ATPase RIL; 56.0 21 0.00045 41.2 6.0 52 368-428 468-520 (590)
365 TIGR03345 VI_ClpV1 type VI sec 56.0 35 0.00075 41.3 8.0 121 300-434 210-338 (852)
366 PRK10246 exonuclease subunit S 55.9 16 0.00035 45.0 5.4 48 372-428 976-1023(1047)
367 TIGR02633 xylG D-xylose ABC tr 55.8 20 0.00043 40.0 5.6 52 366-426 154-205 (500)
368 TIGR01271 CFTR_protein cystic 55.7 38 0.00082 43.5 8.7 46 370-427 1370-1417(1490)
369 PRK10762 D-ribose transporter 55.6 22 0.00047 39.8 5.9 51 367-426 409-459 (501)
370 cd03227 ABC_Class2 ABC-type Cl 55.5 4.7 0.0001 38.1 0.6 28 248-275 22-49 (162)
371 TIGR03258 PhnT 2-aminoethylpho 55.2 21 0.00045 38.7 5.5 56 362-426 146-203 (362)
372 KOG0734|consensus 55.2 29 0.00063 40.0 6.6 131 282-433 316-460 (752)
373 PRK14264 phosphate ABC transpo 55.1 23 0.0005 37.1 5.7 55 362-426 209-263 (305)
374 PRK11288 araG L-arabinose tran 54.9 23 0.0005 39.6 6.0 52 366-426 409-460 (501)
375 PRK14262 phosphate ABC transpo 54.5 22 0.00048 35.6 5.3 51 365-425 158-208 (250)
376 TIGR02314 ABC_MetN D-methionin 54.4 23 0.0005 38.1 5.6 58 361-427 148-206 (343)
377 COG1480 Predicted membrane-ass 54.4 2.7 5.9E-05 48.8 -1.4 80 398-489 498-583 (700)
378 KOG0526|consensus 54.1 13 0.00028 42.3 3.7 25 72-96 468-492 (615)
379 PRK14237 phosphate transporter 53.9 23 0.00051 36.1 5.4 52 365-426 175-226 (267)
380 TIGR03269 met_CoM_red_A2 methy 53.9 23 0.0005 39.7 5.8 52 366-426 181-233 (520)
381 PRK11432 fbpC ferric transport 53.7 22 0.00048 38.3 5.4 57 361-426 144-201 (351)
382 PRK14238 phosphate transporter 53.7 24 0.00052 36.2 5.4 51 366-426 180-230 (271)
383 PRK14246 phosphate ABC transpo 53.5 24 0.00052 35.9 5.3 52 365-426 165-216 (257)
384 PRK14275 phosphate ABC transpo 53.4 24 0.00052 36.6 5.4 55 362-426 191-245 (286)
385 cd03289 ABCC_CFTR2 The CFTR su 53.2 24 0.00052 36.7 5.4 52 366-427 151-202 (275)
386 TIGR03269 met_CoM_red_A2 methy 53.2 23 0.0005 39.7 5.6 52 366-426 440-492 (520)
387 COG1126 GlnQ ABC-type polar am 53.2 55 0.0012 33.8 7.7 58 361-429 144-203 (240)
388 PRK14241 phosphate transporter 53.1 25 0.00054 35.5 5.4 56 361-426 156-211 (258)
389 PRK14248 phosphate ABC transpo 53.0 25 0.00053 35.9 5.4 51 366-426 177-227 (268)
390 PRK14260 phosphate ABC transpo 52.9 26 0.00056 35.5 5.5 52 366-427 163-214 (259)
391 PRK11288 araG L-arabinose tran 52.8 23 0.00049 39.6 5.5 53 365-426 152-204 (501)
392 PRK13547 hmuV hemin importer A 52.8 28 0.0006 35.9 5.8 48 370-426 171-219 (272)
393 PRK14263 phosphate ABC transpo 52.4 26 0.00055 35.8 5.4 52 365-426 161-212 (261)
394 PRK10636 putative ABC transpor 52.3 28 0.00061 40.4 6.3 49 366-426 162-210 (638)
395 PRK14272 phosphate ABC transpo 52.1 28 0.0006 34.9 5.5 56 361-426 156-211 (252)
396 TIGR03420 DnaA_homol_Hda DnaA 52.1 42 0.00091 32.7 6.7 92 301-421 41-132 (226)
397 COG3842 PotA ABC-type spermidi 52.0 22 0.00048 38.6 5.0 58 362-428 145-203 (352)
398 COG3638 ABC-type phosphate/pho 51.8 31 0.00068 35.9 5.8 75 338-427 134-213 (258)
399 TIGR00972 3a0107s01c2 phosphat 51.7 27 0.00059 35.0 5.4 51 366-426 157-207 (247)
400 PRK14257 phosphate ABC transpo 51.6 29 0.00062 37.0 5.8 52 366-427 238-289 (329)
401 PRK10744 pstB phosphate transp 51.5 27 0.00059 35.4 5.4 55 362-426 165-219 (260)
402 TIGR03415 ABC_choXWV_ATP choli 51.4 27 0.00059 38.2 5.7 52 366-426 177-229 (382)
403 PRK04195 replication factor C 51.4 43 0.00093 37.5 7.4 20 301-320 42-61 (482)
404 PRK10865 protein disaggregatio 51.3 1.7E+02 0.0037 35.5 12.8 120 300-433 201-328 (857)
405 cd03272 ABC_SMC3_euk Eukaryoti 51.0 21 0.00047 35.4 4.5 50 370-429 179-228 (243)
406 PRK14243 phosphate transporter 50.9 28 0.00061 35.4 5.4 51 366-426 164-214 (264)
407 PLN03140 ABC transporter G fam 50.7 26 0.00057 44.8 6.1 55 366-429 349-406 (1470)
408 PRK14252 phosphate ABC transpo 50.7 28 0.00061 35.4 5.3 52 365-426 173-224 (265)
409 PLN03232 ABC transporter C fam 50.5 51 0.0011 42.3 8.6 45 371-427 1389-1435(1495)
410 PRK13695 putative NTPase; Prov 50.4 32 0.00069 32.6 5.4 58 371-439 96-156 (174)
411 PRK10938 putative molybdenum t 50.3 23 0.0005 39.4 5.0 52 366-426 414-466 (490)
412 CHL00095 clpC Clp protease ATP 50.2 2.4E+02 0.0051 34.1 13.7 119 300-433 202-328 (821)
413 TIGR00602 rad24 checkpoint pro 50.2 25 0.00054 41.2 5.4 22 301-322 113-134 (637)
414 PRK09087 hypothetical protein; 50.0 35 0.00077 34.4 5.9 80 301-421 47-126 (226)
415 smart00533 MUTSd DNA-binding d 49.8 6.6 0.00014 40.3 0.6 85 193-284 213-307 (308)
416 PRK10982 galactose/methyl gala 49.8 31 0.00067 38.4 5.9 51 367-426 148-198 (491)
417 cd01131 PilT Pilus retraction 49.5 38 0.00082 33.2 5.9 41 372-428 75-115 (198)
418 PRK06067 flagellar accessory p 48.9 58 0.0013 32.4 7.2 20 301-320 28-47 (234)
419 PRK10522 multidrug transporter 48.8 29 0.00062 39.3 5.5 53 366-429 462-517 (547)
420 PRK09700 D-allose transporter 48.7 34 0.00073 38.3 6.0 52 366-426 158-209 (510)
421 COG4148 ModC ABC-type molybdat 48.3 36 0.00077 36.5 5.6 169 228-430 9-198 (352)
422 PRK13549 xylose transporter AT 48.3 32 0.00069 38.5 5.7 53 365-426 155-207 (506)
423 PRK10982 galactose/methyl gala 47.9 36 0.00078 37.9 6.1 51 367-426 405-455 (491)
424 TIGR00606 rad50 rad50. This fa 47.6 52 0.0011 41.6 8.0 55 369-431 1221-1279(1311)
425 PRK14087 dnaA chromosomal repl 47.2 55 0.0012 36.6 7.3 98 301-422 144-249 (450)
426 PRK14088 dnaA chromosomal repl 46.7 43 0.00094 37.2 6.4 95 301-420 133-235 (440)
427 PRK15134 microcin C ABC transp 46.6 34 0.00074 38.5 5.7 53 365-426 168-221 (529)
428 TIGR01194 cyc_pep_trnsptr cycl 46.6 33 0.00071 39.0 5.6 55 366-428 483-537 (555)
429 TIGR01243 CDC48 AAA family ATP 46.6 48 0.0011 39.1 7.1 20 301-320 490-509 (733)
430 PRK10261 glutathione transport 45.7 36 0.00077 39.4 5.8 53 366-427 476-529 (623)
431 cd03241 ABC_RecN RecN ATPase i 45.5 26 0.00057 36.1 4.2 49 371-429 192-240 (276)
432 PF05729 NACHT: NACHT domain 45.5 56 0.0012 29.5 6.0 20 301-320 3-22 (166)
433 TIGR00362 DnaA chromosomal rep 45.5 40 0.00088 36.6 5.9 97 301-421 139-241 (405)
434 KOG0744|consensus 44.7 43 0.00092 36.6 5.6 44 373-421 252-305 (423)
435 COG1101 PhnK ABC-type uncharac 44.5 30 0.00065 35.8 4.3 30 248-278 33-62 (263)
436 PRK15064 ABC transporter ATP-b 44.4 44 0.00095 37.7 6.1 47 368-426 170-216 (530)
437 cd03262 ABC_HisP_GlnQ_permease 44.3 11 0.00023 36.8 1.1 28 292-319 20-47 (213)
438 PRK14256 phosphate ABC transpo 44.2 42 0.0009 33.8 5.4 50 367-426 162-211 (252)
439 TIGR00954 3a01203 Peroxysomal 44.1 40 0.00087 39.4 5.9 50 367-428 596-645 (659)
440 TIGR03608 L_ocin_972_ABC putat 44.0 11 0.00023 36.5 1.0 28 292-319 18-45 (206)
441 CHL00195 ycf46 Ycf46; Provisio 43.9 60 0.0013 36.8 7.1 21 300-320 261-281 (489)
442 cd03226 ABC_cobalt_CbiO_domain 43.7 11 0.00023 36.7 1.0 28 292-319 20-47 (205)
443 PRK11819 putative ABC transpor 43.4 47 0.001 37.8 6.2 52 365-428 175-226 (556)
444 COG3840 ThiQ ABC-type thiamine 43.4 77 0.0017 32.2 6.8 51 370-429 146-198 (231)
445 PF00382 TFIIB: Transcription 43.3 33 0.00072 28.0 3.7 27 471-497 3-29 (71)
446 PRK11147 ABC transporter ATPas 43.1 46 0.001 38.6 6.2 49 366-426 169-217 (635)
447 TIGR02788 VirB11 P-type DNA tr 42.9 47 0.001 35.0 5.7 21 299-319 145-165 (308)
448 PRK14271 phosphate ABC transpo 42.7 41 0.0009 34.6 5.2 51 366-426 176-226 (276)
449 cd03259 ABC_Carb_Solutes_like 42.7 12 0.00025 36.6 1.1 28 292-319 20-47 (213)
450 PRK10247 putative ABC transpor 41.9 12 0.00026 37.1 1.1 29 292-320 27-55 (225)
451 PTZ00243 ABC transporter; Prov 41.9 92 0.002 40.3 9.0 29 293-321 1331-1359(1560)
452 TIGR02211 LolD_lipo_ex lipopro 41.7 12 0.00026 36.6 1.1 29 292-320 25-53 (221)
453 TIGR01189 ccmA heme ABC export 41.7 12 0.00027 36.1 1.1 28 292-319 20-47 (198)
454 PTZ00454 26S protease regulato 41.5 55 0.0012 36.0 6.2 21 300-320 181-201 (398)
455 cd03255 ABC_MJ0796_Lo1CDE_FtsE 41.4 12 0.00027 36.5 1.0 29 292-320 24-52 (218)
456 PRK10261 glutathione transport 41.3 46 0.00099 38.6 5.8 51 366-425 181-232 (623)
457 PRK01156 chromosome segregatio 41.3 46 0.001 40.0 6.0 53 369-429 823-877 (895)
458 PRK15177 Vi polysaccharide exp 41.3 13 0.00028 36.8 1.2 30 292-321 7-36 (213)
459 PRK13540 cytochrome c biogenes 41.2 13 0.00027 36.2 1.1 28 292-319 21-48 (200)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 41.2 53 0.0012 37.3 6.2 51 365-427 173-223 (552)
461 PRK13409 putative ATPase RIL; 41.1 45 0.00097 38.6 5.6 52 366-427 225-276 (590)
462 TIGR01166 cbiO cobalt transpor 41.0 13 0.00027 35.8 1.0 28 292-319 12-39 (190)
463 PRK10762 D-ribose transporter 40.8 48 0.001 37.1 5.7 52 366-426 154-205 (501)
464 PRK00349 uvrA excinuclease ABC 40.8 44 0.00096 40.9 5.7 46 373-427 853-898 (943)
465 PRK07764 DNA polymerase III su 40.7 2.2E+02 0.0048 34.5 11.4 20 302-321 41-60 (824)
466 cd03269 ABC_putative_ATPase Th 40.4 13 0.00028 36.2 1.1 28 292-319 20-47 (210)
467 COG1121 ZnuC ABC-type Mn/Zn tr 40.4 13 0.00028 38.7 1.0 23 296-318 28-50 (254)
468 cd03298 ABC_ThiQ_thiamine_tran 40.4 13 0.00028 36.2 1.0 29 292-320 18-46 (211)
469 PRK10584 putative ABC transpor 40.3 13 0.00029 36.6 1.1 29 292-320 30-58 (228)
470 cd03293 ABC_NrtD_SsuB_transpor 40.3 13 0.00028 36.5 1.0 28 292-319 24-51 (220)
471 cd03257 ABC_NikE_OppD_transpor 40.2 13 0.00028 36.5 1.0 28 292-319 25-52 (228)
472 cd03225 ABC_cobalt_CbiO_domain 40.0 13 0.00029 36.1 1.0 29 292-320 21-49 (211)
473 TIGR02673 FtsE cell division A 40.0 13 0.00029 36.2 1.0 28 292-319 22-49 (214)
474 PF00005 ABC_tran: ABC transpo 39.8 10 0.00022 34.0 0.1 26 294-319 7-32 (137)
475 PRK03918 chromosome segregatio 39.8 48 0.001 39.6 5.8 50 370-428 811-860 (880)
476 COG4178 ABC-type uncharacteriz 39.8 62 0.0013 37.7 6.4 59 360-430 522-582 (604)
477 PLN03210 Resistant to P. syrin 39.6 57 0.0012 40.7 6.6 25 295-319 204-228 (1153)
478 cd03292 ABC_FtsE_transporter F 39.6 14 0.0003 36.0 1.0 29 292-320 21-49 (214)
479 cd03268 ABC_BcrA_bacitracin_re 39.4 14 0.0003 36.0 1.0 29 292-320 20-48 (208)
480 cd03245 ABCC_bacteriocin_expor 39.3 14 0.0003 36.2 1.0 29 292-320 24-52 (220)
481 PRK13543 cytochrome c biogenes 39.0 14 0.0003 36.4 1.0 29 292-320 31-59 (214)
482 TIGR01978 sufC FeS assembly AT 38.9 15 0.00032 36.5 1.2 28 292-319 20-47 (243)
483 KOG0927|consensus 38.9 50 0.0011 38.1 5.3 56 371-438 527-583 (614)
484 COG1123 ATPase components of v 38.8 61 0.0013 37.3 6.1 58 361-430 437-498 (539)
485 TIGR01277 thiQ thiamine ABC tr 38.7 14 0.00031 36.1 1.0 29 292-320 18-46 (213)
486 PRK10771 thiQ thiamine transpo 38.6 14 0.0003 36.7 0.9 29 292-320 19-47 (232)
487 cd03248 ABCC_TAP TAP, the Tran 38.6 14 0.00031 36.3 1.0 29 292-320 34-62 (226)
488 cd03218 ABC_YhbG The ABC trans 38.6 15 0.00032 36.3 1.1 29 292-320 20-48 (232)
489 PF05127 Helicase_RecD: Helica 38.4 31 0.00068 33.9 3.3 35 372-423 91-125 (177)
490 PRK13539 cytochrome c biogenes 38.4 15 0.00032 36.0 1.1 29 292-320 22-50 (207)
491 TIGR03410 urea_trans_UrtE urea 38.4 14 0.00031 36.4 1.0 29 292-320 20-48 (230)
492 cd03235 ABC_Metallic_Cations A 38.3 14 0.00029 36.2 0.8 28 292-319 19-46 (213)
493 cd03258 ABC_MetN_methionine_tr 38.2 15 0.00032 36.4 1.0 29 292-320 25-53 (233)
494 cd03296 ABC_CysA_sulfate_impor 38.2 15 0.00032 36.7 1.0 29 292-320 22-50 (239)
495 cd03254 ABCC_Glucan_exporter_l 38.0 15 0.00032 36.2 1.0 29 292-320 23-51 (229)
496 cd03224 ABC_TM1139_LivF_branch 37.8 15 0.00032 36.0 0.9 28 292-319 20-47 (222)
497 PRK14721 flhF flagellar biosyn 37.8 1.3E+02 0.0028 33.6 8.3 160 299-495 192-371 (420)
498 PRK11614 livF leucine/isoleuci 37.7 14 0.0003 36.8 0.8 29 292-320 25-53 (237)
499 TIGR01184 ntrCD nitrate transp 37.6 15 0.00033 36.5 1.1 27 293-319 6-32 (230)
500 cd03263 ABC_subfamily_A The AB 37.4 15 0.00034 35.9 1.0 28 292-319 22-49 (220)
No 1
>KOG0217|consensus
Probab=100.00 E-value=2.1e-58 Score=517.32 Aligned_cols=239 Identities=24% Similarity=0.346 Sum_probs=207.8
Q ss_pred cCcccccCcccccc---ccccccccc---ccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeee
Q psy13263 274 TPSGCFPDMSELLK---YFENAFDHK---EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYS 346 (577)
Q Consensus 274 i~~GrhPlLe~~l~---~~~n~F~~~---~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~ 346 (577)
+..++||.+..... |++|+...+ +++..++||||||||+..+++++..+ ||||+||+|||..+++.. |+||+
T Consensus 869 ~~~~~Hpcfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~v-ilaq~G~~VPa~~~~~tpidrI~t 947 (1125)
T KOG0217|consen 869 VKGLRHPCFSLPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAV-ILAQIGCDVPAEVMELTPIDRIFT 947 (1125)
T ss_pred EecccCceeecCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHH-HHHHhCCCccHHHhcccchHHHhh
Confidence 35677998766443 788877666 33334489999999999999999998 999999999999999999 99999
Q ss_pred cccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEec
Q psy13263 347 EAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFAT 419 (577)
Q Consensus 347 ~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaT 419 (577)
++|+ ++|||++|+.+...|+.+++.+|||++|| |||||+|.||.|||.|||+||... +|+++|+|
T Consensus 948 RlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DE--------LGRGtst~DG~aIA~aVLe~l~~~i~c~~fFST 1019 (1125)
T KOG0217|consen 948 RLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDE--------LGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFST 1019 (1125)
T ss_pred hcccccchhcCCceEEEeccchHHHHhhcCccceeeehh--------hcCcccccCCcchHHHHHHHHHhcccccCCccc
Confidence 9997 55999999999999999999999999999 999999999999999999999996 99999999
Q ss_pred chHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh--
Q psy13263 420 HYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH-- 497 (577)
Q Consensus 420 Hy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~~-- 497 (577)
|||.|+....++|+|++.||.+...+. ..++|+|||.+|+|+.|||+++|+++|||..||++|...+.+++...
T Consensus 1020 HYhsl~~~~~~~p~Vrl~~Ma~~vd~e----~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~~ 1095 (1125)
T KOG0217|consen 1020 HYHSLCVDFMHHPQVRLLHMACVVDEE----IDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSAN 1095 (1125)
T ss_pred cccchhHhhhcCccccchhheeeecCC----ccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997542 36999999999999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Q psy13263 498 NLRQLFIHKFASLVKSGEKVDVEELQKALE 527 (577)
Q Consensus 498 ~~~~~~~~L~~~~~~~~~~ld~~~l~~l~~ 527 (577)
....+++++...+ ...+++..++..+++
T Consensus 1096 ~~d~~~r~~~~~~--~~s~~s~~~l~sil~ 1123 (1125)
T KOG0217|consen 1096 AADGKIREVVECA--LDSSLSISELHSILD 1123 (1125)
T ss_pred hhhHHHHhhhhhh--hccccCHHHHHHHHh
Confidence 3444555554333 455666766655554
No 2
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-55 Score=500.16 Aligned_cols=247 Identities=26% Similarity=0.393 Sum_probs=220.8
Q ss_pred cCCcchhhhhhhhhhccCcccccCcccccc--cccccccccc-cccccccCCCCCCCchhHHHHHHHHHHHHHhcccccc
Q psy13263 258 TGESTLLTQLCNYESQTPSGCFPDMSELLK--YFENAFDHKE-ASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRT 334 (577)
Q Consensus 258 ~GKStlLk~i~~~~i~i~~GrhPlLe~~l~--~~~n~F~~~~-a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA 334 (577)
..++++....+ +.|.+||||+++..+. |++|+++.+. .+..+||||||||||+|+||+|+|+ ||||+||||||
T Consensus 567 y~rP~~~~~~~---l~i~~gRHPvvE~~~~~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~-imAQiGsfVPA 642 (843)
T COG0249 567 YVRPEFVDSND---LEIKEGRHPVVEAVLDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIV-ILAQIGSFVPA 642 (843)
T ss_pred CCCceecCCCC---EEEEecCcchhhhhccCCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHH-HHHHcCCCeeH
Confidence 44555555544 8899999999999887 8999998887 4456799999999999999999999 99999999999
Q ss_pred ccceecc-ceeeecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHH
Q psy13263 335 QCAHFGC-TVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEK 407 (577)
Q Consensus 335 ~~a~l~~-d~if~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~ 407 (577)
.+|++|+ |+||+++|. |+||||.||.+++.|+++++.+||||||| +||||||+||+||||||+||
T Consensus 643 ~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDE--------iGRGTsT~DGlaIA~Av~ey 714 (843)
T COG0249 643 EKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDE--------IGRGTSTYDGLAIAWAVLEY 714 (843)
T ss_pred HHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEec--------ccCCCCcchhHHHHHHHHHH
Confidence 9999999 999999987 56999999999999999999999999999 99999999999999999999
Q ss_pred HHhc-CCeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q psy13263 408 FLQI-GCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFG 486 (577)
Q Consensus 408 L~~~-~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA 486 (577)
|+++ +|++|||||||||+++....++|.|+||...+.+ +.++|+|+|++|+|.+||||+||+++|+|.+||+||
T Consensus 715 L~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~-----~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA 789 (843)
T COG0249 715 LHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEG-----GDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERA 789 (843)
T ss_pred HHhccCceEEEeccHHHHHHhhhcccccceeEEEEEEcC-----CceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHH
Confidence 9997 9999999999999999999999999999988754 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-------H--HHHHHHHHHHHHhccCCCCHHHHHHH
Q psy13263 487 TTVAFQMEARHN-------L--RQLFIHKFASLVKSGEKVDVEELQKA 525 (577)
Q Consensus 487 ~ei~~~le~~~~-------~--~~~~~~L~~~~~~~~~~ld~~~l~~l 525 (577)
++++.++++... . ...+. .+.+.+..+|++.++|.
T Consensus 790 ~~il~~le~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~tp~ 833 (843)
T COG0249 790 REILAELEKESRSSNLELNQKDLSLFP----KVLKALKSLDPDELTPR 833 (843)
T ss_pred HHHHHHHhhcccCcccchhhhhHhHHH----HHHHHHHhCChhhcCHH
Confidence 999999998652 1 22222 34456777888888875
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=2.2e-50 Score=464.82 Aligned_cols=213 Identities=23% Similarity=0.357 Sum_probs=199.0
Q ss_pred hhhccCcccccCccccc--cccccccccccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceee
Q psy13263 270 YESQTPSGCFPDMSELL--KYFENAFDHKEA-SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIY 345 (577)
Q Consensus 270 ~~i~i~~GrhPlLe~~l--~~~~n~F~~~~a-~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if 345 (577)
..+.+.+||||+++..+ .|++|++..+.. +..+||||||||||+|+|++++|+ +|||+|+||||.+|++++ |+||
T Consensus 561 ~~i~i~~~RHP~le~~~~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~-imAq~G~~VPA~~a~i~~~D~If 639 (840)
T TIGR01070 561 PQLRIREGRHPVVEQVLRTPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIA-LLAQIGSFVPAESAELPLFDRIF 639 (840)
T ss_pred CcEEEEeeECHHHHhccCCCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHH-HHHhcCCCccchheEeccccEEE
Confidence 35889999999998644 489999988754 456799999999999999999999 999999999999999999 9999
Q ss_pred ecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEe
Q psy13263 346 SEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFA 418 (577)
Q Consensus 346 ~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfa 418 (577)
+++|. ++|||+.||.+++.|+.+++.+||||||| |||||++.||.||||||++||.+ .+|++|||
T Consensus 640 trig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE--------~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~ 711 (840)
T TIGR01070 640 TRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDE--------IGRGTSTYDGLALAWAIAEYLHEHIRAKTLFA 711 (840)
T ss_pred EecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEcc--------CCCCCChhHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99997 45999999999999999999999999999 99999999999999999999999 59999999
Q ss_pred cchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy13263 419 THYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496 (577)
Q Consensus 419 THy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~ 496 (577)
||||+|+.+...+++|.|+||.+.+.+ ++++|+|||.+|+|++||||+||+++|||++||+||++++.+++..
T Consensus 712 TH~~eL~~l~~~~~~v~n~~~~~~~~~-----~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 712 THYFELTALEESLPGLKNVHVAALEHN-----GTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred cCchHHHHHhhhCCCeEEEEEEEEEEC-----CcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998643 5899999999999999999999999999999999999999999964
No 4
>KOG0218|consensus
Probab=100.00 E-value=8.2e-51 Score=442.22 Aligned_cols=252 Identities=23% Similarity=0.357 Sum_probs=217.5
Q ss_pred hhhhhhhhhhhhhccccC----ccCCcchhhhhhhhhhccCcccccCcccccc--ccccccccc--ccccccccCCCCCC
Q psy13263 239 DAVIGADELACSYMKESG----CTGESTLLTQLCNYESQTPSGCFPDMSELLK--YFENAFDHK--EASSAGNIIPKAGV 310 (577)
Q Consensus 239 DA~i~a~eLdl~~mkGsn----~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~--~~~n~F~~~--~a~~~~I~gPN~gG 310 (577)
.+...-..++|.+.-... ...++++...+ -.|.|++||||+++.++. |+||+.+.. ..+-.+||||||||
T Consensus 765 kat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~--~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNMGG 842 (1070)
T KOG0218|consen 765 KATLNLATLDCILSLAATSCNVNYVRPTFVDGQ--QEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNMGG 842 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccCcccccch--hhhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCCCC
Confidence 344444557777543221 23355555543 358899999999997664 789987655 34557899999999
Q ss_pred CchhHHHHHHHHHHHHHhccccccccceecc-ceeeecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcc
Q psy13263 311 DKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVEN 383 (577)
Q Consensus 311 Ksvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n 383 (577)
|+.|.||+++|. ||||+|+||||..|++++ |.||++||. |.|||+.||.+++.|+.+++.+|||||||
T Consensus 843 KSsyIrQvALit-IMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDE---- 917 (1070)
T KOG0218|consen 843 KSSYIRQVALIT-IMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDE---- 917 (1070)
T ss_pred chHHHHHHHHHH-HHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHh----
Confidence 999999999999 999999999999999999 999999997 45999999999999999999999999999
Q ss_pred cccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCC-CcccccceeeeecC--CCCcceEEEEEee
Q psy13263 384 YVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEP-NVAFEYMSYIEDKR--NDGIDTIVFLYKL 459 (577)
Q Consensus 384 ~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~-~V~n~hm~~~~~~~--~~~~~~l~flYkL 459 (577)
|||||+|.||+|||+|+++||.+. +|.+||+|||..|+++...+| .|.||||.+.+..+ ..+.+.++|+|||
T Consensus 918 ----lGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYkl 993 (1070)
T KOG0218|consen 918 ----LGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKL 993 (1070)
T ss_pred ----hcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHH
Confidence 999999999999999999999998 999999999999999999887 58999999997432 3467889999999
Q ss_pred cCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhHHH
Q psy13263 460 VPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQ 501 (577)
Q Consensus 460 ~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~~~~~~ 501 (577)
++|+|.+|||++||++|++|.+||.||-.++++++......+
T Consensus 994 vrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke~rn~r 1035 (1070)
T KOG0218|consen 994 VRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKESRNER 1035 (1070)
T ss_pred hhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999998776433
No 5
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=7.1e-49 Score=453.76 Aligned_cols=213 Identities=26% Similarity=0.363 Sum_probs=198.6
Q ss_pred hhhccCcccccCccccc---cccccccccccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-cee
Q psy13263 270 YESQTPSGCFPDMSELL---KYFENAFDHKEA-SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVI 344 (577)
Q Consensus 270 ~~i~i~~GrhPlLe~~l---~~~~n~F~~~~a-~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~i 344 (577)
..+.+.+||||+++..+ .|++|++..+.. +..+||||||||||+|++++++|+ +|||+|+||||.+|++++ |.|
T Consensus 575 ~~l~i~~~rHP~le~~~~~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~-ilAq~G~~VPa~~a~i~~~d~I 653 (854)
T PRK05399 575 PGIDIEEGRHPVVEQVLGGEPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIV-LLAQIGSFVPAESARIGIVDRI 653 (854)
T ss_pred CCEEEEeccCcEEecccCCCceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHH-HHHhcCCceeccceEecccCee
Confidence 35889999999998752 489999888743 456899999999999999999999 999999999999999999 999
Q ss_pred eecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEE
Q psy13263 345 YSEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVF 417 (577)
Q Consensus 345 f~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lf 417 (577)
|+++|. ++|||+.||.+++.|+.+++.++|||||| +||||++.||.||||||++||.+. +|++||
T Consensus 654 ~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE--------~GrGTs~~dg~aia~aile~l~~~~~~~~l~ 725 (854)
T PRK05399 654 FTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDE--------IGRGTSTYDGLSIAWAVAEYLHDKIGAKTLF 725 (854)
T ss_pred eeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEec--------CCCCCCcchhHHHHHHHHHHHHhcCCceEEE
Confidence 999997 45999999999999999999999999999 999999999999999999999998 699999
Q ss_pred ecchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy13263 418 ATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496 (577)
Q Consensus 418 aTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~ 496 (577)
+||||+|+.+...+++|.|+||.+.+. +++++|+|||.+|+|++||||+||+++|||++||+||++++.++++.
T Consensus 726 aTH~~el~~l~~~~~~v~n~~m~~~~~-----~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~~ 799 (854)
T PRK05399 726 ATHYHELTELEEKLPGVKNVHVAVKEH-----GGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESA 799 (854)
T ss_pred EechHHHHHHhhhcCCeEEEEEEEEEe-----CCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999864 36899999999999999999999999999999999999999999953
No 6
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=1.3e-48 Score=391.32 Aligned_cols=211 Identities=25% Similarity=0.414 Sum_probs=182.5
Q ss_pred hhccCcccccCccccc---ccccccccccccc--cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-cee
Q psy13263 271 ESQTPSGCFPDMSELL---KYFENAFDHKEAS--SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVI 344 (577)
Q Consensus 271 ~i~i~~GrhPlLe~~l---~~~~n~F~~~~a~--~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~i 344 (577)
.+.+++||||+++..+ ++++|++...... ..+||||||||||+|+|++++++ +|||+|+||||.++++++ |.|
T Consensus 11 ~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~-ilaq~G~~VPA~~~~i~~~d~I 89 (235)
T PF00488_consen 11 SLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIV-ILAQIGCFVPAESAEIPIFDRI 89 (235)
T ss_dssp EEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHH-HHHTTT--BSSSEEEEE--SEE
T ss_pred CEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHh-hhhhcCceeeecccccccccEE
Confidence 5788999999999875 4899999888654 57899999999999999999999 999999999999999999 999
Q ss_pred eecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEE
Q psy13263 345 YSEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVF 417 (577)
Q Consensus 345 f~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lf 417 (577)
|+++|. +.|+|+.||.+++.++..++.+||||||| |||||++.||.||++|++++|.++ +|++||
T Consensus 90 ~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE--------~g~gT~~~eg~ai~~aile~l~~~~~~~~i~ 161 (235)
T PF00488_consen 90 FTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDE--------LGRGTNPEEGIAIAIAILEYLLEKSGCFVII 161 (235)
T ss_dssp EEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEES--------TTTTSSHHHHHHHHHHHHHHHHHTTT-EEEE
T ss_pred EeecccccccccccccHHHhHHHHHhhhhhcccceeeeccc--------ccCCCChhHHHHHHHHHHHHHHHhccccEEE
Confidence 999876 34999999999999999999999999999 999999999999999999999995 999999
Q ss_pred ecchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy13263 418 ATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495 (577)
Q Consensus 418 aTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~ 495 (577)
||||++|.++...+++|.++||++...+ ++++|+|+|.+|++..|||+++|+++|+|++||+||++++++|++
T Consensus 162 ~TH~~~l~~~~~~~~~v~~~~~~~~~~~-----~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~l~~ 234 (235)
T PF00488_consen 162 ATHFHELAELLERNPNVQNYHMEVEEDN-----DSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQLEE 234 (235)
T ss_dssp EES-GGGGGHHHHSTTEEEEEEEEEEET-----TEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHHHHT
T ss_pred EeccchhHHHhhhCccccccceeeeeec-----cccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHhc
Confidence 9999999999998999999999999653 699999999999999999999999999999999999999999985
No 7
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=6.6e-43 Score=346.81 Aligned_cols=204 Identities=26% Similarity=0.393 Sum_probs=185.6
Q ss_pred cCcccccCccccc--ccccccccccc--cccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecc
Q psy13263 274 TPSGCFPDMSELL--KYFENAFDHKE--ASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEA 348 (577)
Q Consensus 274 i~~GrhPlLe~~l--~~~~n~F~~~~--a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~i 348 (577)
+.+||||+++... ++++|++.... .+..+++|||++||++|++++++++ +|+|+|+||||.++++++ |.||+++
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~-~la~~G~~vpa~~~~i~~~~~i~~~~ 80 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV-IMAQMGMDVPAKSMRLSLVDRIFTRI 80 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH-HHHHcCCccCccccEeccccEEEEec
Confidence 5789999997543 48888877654 4567899999999999999999999 999999999999999999 9999998
Q ss_pred cc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecch
Q psy13263 349 QK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHY 421 (577)
Q Consensus 349 G~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy 421 (577)
|. ++|+|+.||.+++.|+..++.++|||||| +||||++.||.+|+++|+++|.+. +|.+||+|||
T Consensus 81 ~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE--------~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~ 152 (218)
T cd03286 81 GARDDIMKGESTFMVELSETANILRHATPDSLVILDE--------LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHY 152 (218)
T ss_pred CcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEec--------ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 76 44999999999999999999999999999 999999999999999999999998 9999999999
Q ss_pred HHHHHHhhcCCCcccccceeeeecC-CCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q psy13263 422 HSVARRLREEPNVAFEYMSYIEDKR-NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFG 486 (577)
Q Consensus 422 ~eL~~l~~~~~~V~n~hm~~~~~~~-~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA 486 (577)
++|...+..+++|.++||++...+. +...++++|+|||.+|+++.|||+++|+++|+|++||+||
T Consensus 153 ~el~~~~~~~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 153 HSLCDEFHEHGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred HHHHHHhhcCcceEEEEEEEEEeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 9999999888999999999986431 2234789999999999999999999999999999999997
No 8
>KOG0220|consensus
Probab=100.00 E-value=5.9e-43 Score=382.06 Aligned_cols=253 Identities=21% Similarity=0.265 Sum_probs=212.0
Q ss_pred hccCcccccCcccccc--ccccccccccccc-ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeec
Q psy13263 272 SQTPSGCFPDMSELLK--YFENAFDHKEASS-AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSE 347 (577)
Q Consensus 272 i~i~~GrhPlLe~~l~--~~~n~F~~~~a~~-~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~ 347 (577)
+.|.+||||+|+.... ++.|+.....+++ .+||||||+||++|+||+++++ |||||||||||.+|.|++ ++||+|
T Consensus 592 laI~qGRHPILe~i~~ek~i~N~t~~t~~s~f~IITGPNMsGKSTYLKQvAl~~-IMAQIGc~IPA~YaS~pIf~RIFtR 670 (867)
T KOG0220|consen 592 LAIKQGRHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQVALCQ-IMAQIGSYVPAEYASFRVFKRIFTR 670 (867)
T ss_pred eeeccCCCchhhhhcccCcccCcceeecccceEEEECCCCCcchHHHHHHHHHH-HHHHhccCcchhhccchHHHHHHHH
Confidence 7889999999998664 5667666666555 4577999999999999999999 999999999999999999 999999
Q ss_pred ccccc------hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 348 AQKKQ------KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 348 iG~~q------StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
||..+ |+|+.||++++.|+.+++.+|||+||| ||||||+.||+||+|||||||+..+++|+|||||
T Consensus 671 mg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDE--------LgR~TSteeGiaityAvCE~lL~LkayTflATHF 742 (867)
T KOG0220|consen 671 MGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDE--------LGRGTSTEEGIAITYAVCEYLLSLKAYTFLATHF 742 (867)
T ss_pred hcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhh--------hccCCccccchhhHHHHHHHHHHhhHhHHHHHHH
Confidence 99733 999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcccccceeeeecCCCCcceEE-EEEeecCCCC-CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh-
Q psy13263 422 HSVARRLREEPNVAFEYMSYIEDKRNDGIDTIV-FLYKLVPGIC-PKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN- 498 (577)
Q Consensus 422 ~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~-flYkL~~G~~-~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~~~- 498 (577)
.+|+.++.-+|+|.|+||.+...+ ++.. ..|||..|.. +.-||+.+|++.-+|.+|++.|+.+.-++.....
T Consensus 743 ldIa~lan~~paVdnlHF~~q~~e-----Nssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~~ 817 (867)
T KOG0220|consen 743 LDIAAIANYYPAVDNLHFLVQTDE-----NSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQILQ 817 (867)
T ss_pred HHHHHHhhcCccccceeeeeeecc-----cchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHHHHh
Confidence 999999999999999999998643 2333 3699999997 5799999999999999999999999988876543
Q ss_pred --------HHH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy13263 499 --------LRQ-LFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLE 541 (577)
Q Consensus 499 --------~~~-~~~~L~~~~~~~~~~ld~~~l~~l~~~L~~~~~~~~~~l~ 541 (577)
.++ ....+..-+.+--.+.++ ..++.+|+.+++.|++++.
T Consensus 818 ~~rd~~~~~rq~~Vy~~a~~~~~t~gn~~e---~~~~~klk~l~k~~ve~~~ 866 (867)
T KOG0220|consen 818 NQRDTPEMERQRAVYHLATRLVQTAGNSDE---DSLRIKLKNLKKKYKEDFP 866 (867)
T ss_pred hccCchHHHHHHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHHHhhcc
Confidence 111 111122211111122233 3368899999999998864
No 9
>KOG0219|consensus
Probab=100.00 E-value=1.4e-42 Score=383.74 Aligned_cols=214 Identities=22% Similarity=0.351 Sum_probs=199.4
Q ss_pred hhccCcccccCcccc--ccccccccccc--ccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceee
Q psy13263 271 ESQTPSGCFPDMSEL--LKYFENAFDHK--EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIY 345 (577)
Q Consensus 271 ~i~i~~GrhPlLe~~--l~~~~n~F~~~--~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if 345 (577)
.+.+.++|||+++.. +.|++|+.+.. +.+..+|||||||||++|.++++.|. +|||||||||+..|.+++ |.||
T Consensus 614 rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~-lmAQIGcfVPce~A~i~IvD~Il 692 (902)
T KOG0219|consen 614 RLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIV-LMAQIGCFVPCESATISIVDGIL 692 (902)
T ss_pred HHHHHhcccchhhccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHH-HHHHhCCceehhhcCCchhhHHH
Confidence 567788999999864 45899976666 66778899999999999999999999 999999999999999999 9999
Q ss_pred ecccccc------hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEe
Q psy13263 346 SEAQKKQ------KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFA 418 (577)
Q Consensus 346 ~~iG~~q------StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfa 418 (577)
+++|.++ ||||.||-+++.|++.++.+|||+||| +||||+++||++|||||.||++.+ +|++|||
T Consensus 693 ~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDE--------LGRGTSt~DGfgiAwai~ehi~~ki~cf~lfA 764 (902)
T KOG0219|consen 693 TRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDE--------LGRGTSTYDGFGIAWAIAEHIATKIGCFCLFA 764 (902)
T ss_pred hhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEec--------cCCCceeccCccHHHHHHHHHHHHHhHhHHHH
Confidence 9988643 999999999999999999999999999 999999999999999999999998 8999999
Q ss_pred cchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q psy13263 419 THYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498 (577)
Q Consensus 419 THy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~~~ 498 (577)
||||||+.+...++.|+|.||.+...+ +.++.+|++.+|+|+.||||+||+++|||+.||+.|++++.++++...
T Consensus 765 THfhElt~lae~~~~vKn~h~~a~i~~-----~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~ 839 (902)
T KOG0219|consen 765 THFHELTKLAEQLPTVKNLHVTAQIEN-----DDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELV 839 (902)
T ss_pred hHHHHHHhhhhhhhhhhhheeeeEecC-----cchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999754 689999999999999999999999999999999999999999987654
No 10
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.8e-41 Score=335.08 Aligned_cols=206 Identities=27% Similarity=0.427 Sum_probs=184.9
Q ss_pred hccCcccccCccccc--cccccccccc--ccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeee
Q psy13263 272 SQTPSGCFPDMSELL--KYFENAFDHK--EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYS 346 (577)
Q Consensus 272 i~i~~GrhPlLe~~l--~~~~n~F~~~--~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~ 346 (577)
|.+++||||+++... .+++|++... ..+..+|+|||++||++|+++++.+. +++|+|+||||..++++. |.||+
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~~~~~~~i~~ 79 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSATLSIFDSVLT 79 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceEEeccceEEE
Confidence 357899999998755 4788877665 34567899999999999999999998 999999999999999999 99999
Q ss_pred cccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEec
Q psy13263 347 EAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFAT 419 (577)
Q Consensus 347 ~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaT 419 (577)
++|. ++|+|+.||.+++.++..++.++|||||| +|+||++.||.+|+++++++|.+. +|.+|++|
T Consensus 80 ~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE--------~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~T 151 (222)
T cd03287 80 RMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDE--------LGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVT 151 (222)
T ss_pred EecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEcc--------CCCCCChhhHHHHHHHHHHHHHhccCCeEEEEc
Confidence 9986 34899999999999999999999999999 999999999999999999999998 89999999
Q ss_pred chHHHHHHhhcC-CCcccccceeeeecC---CCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q psy13263 420 HYHSVARRLREE-PNVAFEYMSYIEDKR---NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFG 486 (577)
Q Consensus 420 Hy~eL~~l~~~~-~~V~n~hm~~~~~~~---~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA 486 (577)
||++|.+++..+ ++|.|+||.+..... ....++++|+|||.+|+++.|||++||+++|||++||+||
T Consensus 152 H~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 152 HYPSLGEILRRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred ccHHHHHHHHhcccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 999999988764 469999999885421 1245789999999999999999999999999999999997
No 11
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=7.3e-40 Score=375.61 Aligned_cols=279 Identities=14% Similarity=0.137 Sum_probs=220.5
Q ss_pred CCCccccCcccccccCcchhhHHHHHhhCcC--chhhhHh----hhhHHHhhhhhhhhhhhhhhhhccccC----ccCCc
Q psy13263 192 NPKTLYVPPEFLKKQTPCMGQWWTIKSQNFD--CVLFFKV----GKFYELFHMDAVIGADELACSYMKESG----CTGES 261 (577)
Q Consensus 192 d~sTl~Ipp~~l~~~TPl~rQ~~~lKa~~~D--~vLLfrv----G~FYElf~~DA~i~a~eLdl~~mkGsn----~~GKS 261 (577)
-++|+||.|.. +..+..++.++..+... .-++.++ ....+.+ ..+......+|+.+..... ....+
T Consensus 218 sg~t~y~ep~~---~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l-~~~~~~l~~lD~l~a~a~~a~~~~~~~P 293 (782)
T PRK00409 218 SGATLYIEPQS---VVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFL-KFLNKIFDELDFIFARARYAKALKATFP 293 (782)
T ss_pred CCCEEEEEcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 35789998875 34445555555544333 1222222 2222222 1222222345555443322 12333
Q ss_pred chhhhhhhhhhccCcccccCcccccccccccccccccc-cccccCCCCCCCchhHHHHHHHHHHHHHhcccccccc-cee
Q psy13263 262 TLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEAS-SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQC-AHF 339 (577)
Q Consensus 262 tlLk~i~~~~i~i~~GrhPlLe~~l~~~~n~F~~~~a~-~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~-a~l 339 (577)
.+. ....+.+.+||||++.. -.+++|++..+... ..+||||||||||+|+|++++++ +|+|+|+||||.. +.+
T Consensus 294 ~~~---~~~~i~l~~~rHPll~~-~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~-~maq~G~~vpa~~~~~i 368 (782)
T PRK00409 294 LFN---DEGKIDLRQARHPLLDG-EKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA-LMAKSGLPIPANEPSEI 368 (782)
T ss_pred eEc---CCCcEEEcCcCCceecc-CceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHH-HHHHhCCCcccCCCccc
Confidence 333 23358889999999864 34889999887543 46789999999999999999999 9999999999986 899
Q ss_pred cc-ceeeecccccc------hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcC
Q psy13263 340 GC-TVIYSEAQKKQ------KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIG 412 (577)
Q Consensus 340 ~~-d~if~~iG~~q------StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~ 412 (577)
++ |.||+++|+.| |+|+.+|.++..++..++.++|||||| +|+||++.+|.+|+.+++++|.+.+
T Consensus 369 ~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE--------~~~GtDp~eg~ala~aile~l~~~~ 440 (782)
T PRK00409 369 PVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDE--------LGAGTDPDEGAALAISILEYLRKRG 440 (782)
T ss_pred cccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecC--------CCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99 99999999754 899999999999998889999999999 9999999999999999999999999
Q ss_pred CeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy13263 413 CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQ 492 (577)
Q Consensus 413 ~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~ 492 (577)
|.+||+|||++|+.++...++|.|++|.++. +++.|+|+|..|+++.||||+||+++|||++||++|++++..
T Consensus 441 ~~vIitTH~~el~~~~~~~~~v~~~~~~~d~-------~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 441 AKIIATTHYKELKALMYNREGVENASVEFDE-------ETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE 513 (782)
T ss_pred CEEEEECChHHHHHHHhcCCCeEEEEEEEec-------CcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 9999999999999999989999999998864 479999999999999999999999999999999999999876
Q ss_pred HH
Q psy13263 493 ME 494 (577)
Q Consensus 493 le 494 (577)
-.
T Consensus 514 ~~ 515 (782)
T PRK00409 514 DK 515 (782)
T ss_pred hh
Confidence 43
No 12
>KOG0221|consensus
Probab=100.00 E-value=1.8e-40 Score=357.45 Aligned_cols=230 Identities=19% Similarity=0.300 Sum_probs=204.9
Q ss_pred CcchhhhhhhhhhccCcccccCcccccc-ccccccccc--ccccccccCCCCCCCchhHHHHHHHHHHHHHhcccccccc
Q psy13263 260 ESTLLTQLCNYESQTPSGCFPDMSELLK-YFENAFDHK--EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQC 336 (577)
Q Consensus 260 KStlLk~i~~~~i~i~~GrhPlLe~~l~-~~~n~F~~~--~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~ 336 (577)
.+.+..+.+. +.|++||||+++..++ |++|+...+ +.|..+|||||++||++|+|++++|+ +++|||+||||..
T Consensus 560 ~P~lv~e~~i--l~I~ngrh~l~e~~~dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvgliv-fLahIGsFVPAe~ 636 (849)
T KOG0221|consen 560 RPRLVPEVLI--LRIQNGRHPLMELCADTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIV-FLAHIGSFVPAEE 636 (849)
T ss_pred CCccccHHHH--HHHHcCChhHHHHHHHhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhh-HHHhhccccchhh
Confidence 4445555443 6789999999998876 899977655 66777899999999999999999999 9999999999999
Q ss_pred ceecc-ceeeecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHH
Q psy13263 337 AHFGC-TVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFL 409 (577)
Q Consensus 337 a~l~~-d~if~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~ 409 (577)
|++|+ |+||++|+. +||||+.++.+++..+++|+.+||||||| +|+||++.||.+|..+|+.|++
T Consensus 637 A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDE--------fGKGT~tedGlsLlasvm~~w~ 708 (849)
T KOG0221|consen 637 AEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDE--------FGKGTNTEDGLSLLASVMRHWL 708 (849)
T ss_pred hhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhh--------ccCCccccccHHHHHHHHHHHH
Confidence 99999 999999875 78999999999999999999999999999 9999999999999999999999
Q ss_pred hc---CCeEEEecchHHHHHH--hhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHH
Q psy13263 410 QI---GCLTVFATHYHSVARR--LREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVK 484 (577)
Q Consensus 410 ~~---~~~~lfaTHy~eL~~l--~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~ 484 (577)
++ .++++++||||+|... +...+-+++|.|.+... +.+.|+|+||+.+|.+..|||+++|+.+|+|++||.
T Consensus 709 ~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~----~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~ 784 (849)
T KOG0221|consen 709 ARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLRE----DGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVA 784 (849)
T ss_pred hcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHh----ccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHH
Confidence 98 3599999999999985 45566788999988853 247899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q psy13263 485 FGTTVAFQMEARHNLRQLFI 504 (577)
Q Consensus 485 rA~ei~~~le~~~~~~~~~~ 504 (577)
||++++..++.+....+...
T Consensus 785 Ra~~v~~ai~sg~~vk~~k~ 804 (849)
T KOG0221|consen 785 RAKEVSDAIRSGKPVKPVKD 804 (849)
T ss_pred HHHHHHHHHHcCCCchhhhh
Confidence 99999999999987654443
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=7.5e-39 Score=318.11 Aligned_cols=208 Identities=23% Similarity=0.342 Sum_probs=186.8
Q ss_pred cCcccccCcccc--ccccccccccc--ccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecc
Q psy13263 274 TPSGCFPDMSEL--LKYFENAFDHK--EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEA 348 (577)
Q Consensus 274 i~~GrhPlLe~~--l~~~~n~F~~~--~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~i 348 (577)
+.+||||+++.. -++++|++... ..+..+++|||+|||++|+++++++. +|+|+|+||||..+.+++ +.+|.++
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-~la~~g~~vpa~~~~~~~~~~il~~~ 80 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-LMAQIGCFVPCDSADIPIVDCILARV 80 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-HHHHhCCCcCcccEEEeccceeEeee
Confidence 578999999862 23778877665 34556899999999999999999998 999999999999999999 9999987
Q ss_pred cc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecch
Q psy13263 349 QK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHY 421 (577)
Q Consensus 349 G~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy 421 (577)
|. +.|+|+.||.+++.++..++.++|||||| +||||++.||.+++++++++|.+. ++.+||+||+
T Consensus 81 ~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDE--------p~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 81 GASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDE--------LGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred ccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEec--------CcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 75 34999999999999988788999999999 999999999999999999999875 8999999999
Q ss_pred HHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy13263 422 HSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQM 493 (577)
Q Consensus 422 ~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~l 493 (577)
++|.++....+.+.++||.+.... ..+++.|+|||.+|+++.|||+++|+++|||++||+||+++++++
T Consensus 153 ~el~~~~~~~~~i~~g~~~~~~~~---~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 153 HELTALADEVPNVKNLHVTALTDD---ASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred HHHHHHhhcCCCeEEEEEEEEEeC---CCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 999999988889999999877532 246899999999999999999999999999999999999999876
No 14
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=3.6e-38 Score=361.04 Aligned_cols=285 Identities=15% Similarity=0.148 Sum_probs=224.4
Q ss_pred CCCccccCcccccccCcchhhHHHHHhhCcC--chhhhH----hhhhHHHhhhhhhhhhhhhhhhhccccCc-cCCcchh
Q psy13263 192 NPKTLYVPPEFLKKQTPCMGQWWTIKSQNFD--CVLFFK----VGKFYELFHMDAVIGADELACSYMKESGC-TGESTLL 264 (577)
Q Consensus 192 d~sTl~Ipp~~l~~~TPl~rQ~~~lKa~~~D--~vLLfr----vG~FYElf~~DA~i~a~eLdl~~mkGsn~-~GKStlL 264 (577)
-++|+||.|.. ++.+..++.++..+... ..|+.+ +......+..... ....+|+.+.+.... ..+.+++
T Consensus 213 sg~t~~~ep~~---~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~-~l~~lD~l~a~a~~a~~~~~~~P 288 (771)
T TIGR01069 213 SGETFYIEPQA---IVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFK-EFDFLDSLQARARYAKAVKGEFP 288 (771)
T ss_pred CCCEEEEEcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCeec
Confidence 46899999875 45556666666655333 122222 2333332222222 223456655443321 1112223
Q ss_pred hhhhhhhhccCcccccCccccccccccccccccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhcccccccc-ceecc-
Q psy13263 265 TQLCNYESQTPSGCFPDMSELLKYFENAFDHKEA-SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQC-AHFGC- 341 (577)
Q Consensus 265 k~i~~~~i~i~~GrhPlLe~~l~~~~n~F~~~~a-~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~-a~l~~- 341 (577)
.......+.+.+++||++.. -.+++|+|..... +..+|+|||+||||+|+++++.+. +|+|.|+|||+.. +.+++
T Consensus 289 ~~~~~~~i~l~~~rhPll~~-~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~-l~aq~G~~Vpa~~~~~~~~~ 366 (771)
T TIGR01069 289 MPSFTGKIILENARHPLLKE-PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLA-LMFQSGIPIPANEHSEIPYF 366 (771)
T ss_pred eecCCCCEEEccccCceecC-CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHH-HHHHhCCCccCCccccccch
Confidence 22222368889999999863 2478899988765 567899999999999999999998 9999999999986 78998
Q ss_pred ceeeecccccc------hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeE
Q psy13263 342 TVIYSEAQKKQ------KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLT 415 (577)
Q Consensus 342 d~if~~iG~~q------StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~ 415 (577)
|.+|+++|..+ |+|+.+|.++..++..++.++|||||| +|+||++.+|.+|+++++++|.+++|.+
T Consensus 367 d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE--------~g~GtD~~eg~ala~aiLe~l~~~g~~v 438 (771)
T TIGR01069 367 EEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDE--------LGAGTDPDEGSALAISILEYLLKQNAQV 438 (771)
T ss_pred hheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecC--------CCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 99999988743 999999999999998889999999999 9999999999999999999999999999
Q ss_pred EEecchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy13263 416 VFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495 (577)
Q Consensus 416 lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~ 495 (577)
||+|||++|..+....++|.|++|.++. +++.|+|+|.+|+++.||||+||+++|||++||++|++++.....
T Consensus 439 iitTH~~eL~~~~~~~~~v~~~~~~~d~-------~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~ 511 (771)
T TIGR01069 439 LITTHYKELKALMYNNEGVENASVLFDE-------ETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKE 511 (771)
T ss_pred EEECChHHHHHHhcCCCCeEEeEEEEcC-------CCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHH
Confidence 9999999999998889999999999875 379999999999999999999999999999999999999987654
Q ss_pred hh
Q psy13263 496 RH 497 (577)
Q Consensus 496 ~~ 497 (577)
..
T Consensus 512 ~~ 513 (771)
T TIGR01069 512 EI 513 (771)
T ss_pred HH
Confidence 43
No 15
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=8.7e-37 Score=302.03 Aligned_cols=203 Identities=24% Similarity=0.347 Sum_probs=185.4
Q ss_pred cCcccccCccccc---cccccccccccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecc
Q psy13263 274 TPSGCFPDMSELL---KYFENAFDHKEA-SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEA 348 (577)
Q Consensus 274 i~~GrhPlLe~~l---~~~~n~F~~~~a-~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~i 348 (577)
|.+||||+++..+ .+++|+++.... +..+++|||++|||+|+++++.+. +++|+|+++||..+.++. +.+|+++
T Consensus 2 i~~~~hp~~~~~~~~~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~-~l~~~g~~vp~~~~~i~~~~~i~~~~ 80 (216)
T cd03284 2 IEGGRHPVVEQVLDNEPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIA-LLAQIGSFVPASKAEIGVVDRIFTRI 80 (216)
T ss_pred cccccCCEEeeccCCCceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHH-HHhccCCeeccccceecceeeEeccC
Confidence 5789999998764 378888876643 456799999999999999999988 999999999999999999 9999987
Q ss_pred cc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecch
Q psy13263 349 QK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHY 421 (577)
Q Consensus 349 G~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy 421 (577)
+. ++|+|+.||.++..++..++.++|||||| +|+||++.||.+++++++++|.+. ++.+|++||+
T Consensus 81 ~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDE--------p~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 81 GASDDLAGGRSTFMVEMVETANILNNATERSLVLLDE--------IGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred CchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEec--------CCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCc
Confidence 64 56999999999999998899999999999 999999999999999999999998 9999999999
Q ss_pred HHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHH
Q psy13263 422 HSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVA 490 (577)
Q Consensus 422 ~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~ 490 (577)
++|.++....+.+.++||.+... .++++|+|+|.+|.++.|||+.+|+++|+|++||+||++++
T Consensus 153 ~~l~~l~~~~~~v~~~~~~~~~~-----~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 153 HELTELEGKLPRVKNFHVAVKEK-----GGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred HHHHHHhhcCCCeEEEEEEEEee-----CCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 99999998889999999988754 36899999999999999999999999999999999999873
No 16
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.2e-36 Score=295.92 Aligned_cols=196 Identities=21% Similarity=0.333 Sum_probs=175.5
Q ss_pred cCcccccCccccc-cccccccccccc--ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeeccc
Q psy13263 274 TPSGCFPDMSELL-KYFENAFDHKEA--SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQ 349 (577)
Q Consensus 274 i~~GrhPlLe~~l-~~~~n~F~~~~a--~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG 349 (577)
+++||||+++... .+++|+|..+.. +..+|+|||++|||+|+++++.+. +|+|+|+|+||..++++. |++|++++
T Consensus 2 i~~~rHPll~~~~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~-~la~~G~~v~a~~~~~~~~d~i~~~l~ 80 (213)
T cd03281 2 IQGGRHPLLELFVDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIV-FLAHIGSFVPADSATIGLVDKIFTRMS 80 (213)
T ss_pred cccccCCEEeccCCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHH-HHHhCCCeeEcCCcEEeeeeeeeeeeC
Confidence 5789999998633 489999988765 667899999999999999999998 899999999999999999 99999887
Q ss_pred cc------chhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc---CCeEEEecc
Q psy13263 350 KK------QKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI---GCLTVFATH 420 (577)
Q Consensus 350 ~~------qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~---~~~~lfaTH 420 (577)
.. .|+|+.||.++..++..++.++|||||| +|+||++.+|.+++++++++|.+. ++.+||+||
T Consensus 81 ~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE--------~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH 152 (213)
T cd03281 81 SRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDE--------FGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTH 152 (213)
T ss_pred CccChhhccchHHHHHHHHHHHHHhCCCCcEEEecc--------ccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Confidence 63 4899999999999999999999999999 999999999999999999999875 358999999
Q ss_pred hHHHHHHhh--cCCCcccccceeeeecC-CCCcceEEEEEeecCCCCCCcHHHHHHHHcCC
Q psy13263 421 YHSVARRLR--EEPNVAFEYMSYIEDKR-NDGIDTIVFLYKLVPGICPKSFGFNVAELAGI 478 (577)
Q Consensus 421 y~eL~~l~~--~~~~V~n~hm~~~~~~~-~~~~~~l~flYkL~~G~~~~SyGi~vArlaGl 478 (577)
|+++...+. ..+.+.++||++..+.. .+..++++|+|||.+|+++.|||++||+++|+
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 153 FHELFNRSLLPERLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred hHHHHHhhhhccCCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 999999876 57899999999976421 12357999999999999999999999999996
No 17
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.1e-34 Score=285.15 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=172.5
Q ss_pred cCcccccCcccccc-cccccccccc--cccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeeccc
Q psy13263 274 TPSGCFPDMSELLK-YFENAFDHKE--ASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQ 349 (577)
Q Consensus 274 i~~GrhPlLe~~l~-~~~n~F~~~~--a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG 349 (577)
|++||||+++...+ ++.|+++... .+..+++|||++|||+|+++++.++ +|+|+|+||||..+++++ +.||+.++
T Consensus 2 i~~~~hpll~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-~la~~G~~vpa~~~~l~~~d~I~~~~~ 80 (204)
T cd03282 2 IRDSRHPILDRDKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA-IMAQIGCFVPAEYATLPIFNRLLSRLS 80 (204)
T ss_pred cccccCCeEeccCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH-HHHHcCCCcchhhcCccChhheeEecC
Confidence 57899999986443 7777666554 3557899999999999999999999 999999999999999999 99999877
Q ss_pred cc------chhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH
Q psy13263 350 KK------QKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS 423 (577)
Q Consensus 350 ~~------qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e 423 (577)
.. .|+|+.||.++..++..++.++|||||| +|+||++.||.+++++++++|.+.++.+|++||+++
T Consensus 81 ~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE--------~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 81 NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDE--------LGRGTSSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEecc--------ccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 53 3899999999999998899999999999 999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCC-CcHHHHHHHHcC
Q psy13263 424 VARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICP-KSFGFNVAELAG 477 (577)
Q Consensus 424 L~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~-~SyGi~vArlaG 477 (577)
+.+++...++|.++||.+.... ++++.|+|||.+|+|. .||||+|||++.
T Consensus 153 l~~~~~~~~~v~~~~~~~~~~~----~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 153 IAAILGNKSCVVHLHMKAQSIN----SNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred HHHHhhcCCCeEEEEEEEEEcC----CCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 9999988899999999988642 2688999999999999 999999999864
No 18
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=9.9e-34 Score=272.98 Aligned_cols=175 Identities=30% Similarity=0.470 Sum_probs=163.6
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecccc------cchhhhhchhhhHHhhhcCCCceE
Q psy13263 302 GNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQRV 374 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG~------~qStF~~Em~e~~~il~~a~~~sL 374 (577)
++||||+||||+|+|+++++. +|+|+|+||||..+.++. |.+|..++. +.|+|+.||.+++.++..++.++|
T Consensus 3 ~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 3 IITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 589999999999999999998 999999999999999999 999988764 349999999999999988899999
Q ss_pred EeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcceE
Q psy13263 375 ATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTI 453 (577)
Q Consensus 375 VLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l 453 (577)
+|+|| +++||++.+|.+++++++++|.++ ++.+|++||+++|.++....++|.++||.+...+ +.+
T Consensus 82 lllDE--------p~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~-----~~~ 148 (185)
T smart00534 82 VLLDE--------LGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEET-----ENL 148 (185)
T ss_pred EEEec--------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEec-----Cce
Confidence 99999 999999999999999999999985 8999999999999999888889999999988642 579
Q ss_pred EEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHH
Q psy13263 454 VFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVA 490 (577)
Q Consensus 454 ~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~ 490 (577)
.|+|+|.+|++..|||+++|+++|+|++||+||++++
T Consensus 149 ~~~Y~l~~G~~~~s~a~~~a~~~g~~~~i~~~a~~~~ 185 (185)
T smart00534 149 TFLYKLTPGVAGKSYGIEVAKLAGLPKEVIERAKEIL 185 (185)
T ss_pred eEEEEEeECCCCCcHHHHHHHHhCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999873
No 19
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.97 E-value=2e-31 Score=302.66 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=184.6
Q ss_pred hhhccCcccccCccccccccccccccccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccc-eecc-ceeee
Q psy13263 270 YESQTPSGCFPDMSELLKYFENAFDHKEA-SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCA-HFGC-TVIYS 346 (577)
Q Consensus 270 ~~i~i~~GrhPlLe~~l~~~~n~F~~~~a-~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a-~l~~-d~if~ 346 (577)
..+.+..++||++... +++.+..+.. +...|||||+||||+.+++++++. +|+|+|.++||... ++++ +.||+
T Consensus 291 ~~l~l~~~~HPll~~~---v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~-lm~q~gl~i~a~~gsei~~F~~i~a 366 (753)
T COG1193 291 GVLELLDARHPLLKED---VPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLR-LMAQSGLPIPALEGSELPVFVKIFA 366 (753)
T ss_pred ceEEeccccCccCccc---cccccccccccceeeEecCCCCcceehHHHHHHHH-HHHHcCCCeeccCCCcchhHHHhhh
Confidence 3578899999999875 5566655544 446789999999999999999999 99999999999875 9999 99999
Q ss_pred cccccc------hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecc
Q psy13263 347 EAQKKQ------KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATH 420 (577)
Q Consensus 347 ~iG~~q------StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTH 420 (577)
+||+.| |||..+|..+..|+..++ +||++|| ||.||+|.+|.|+|.+|+++|.+++|.++.+||
T Consensus 367 DIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DE--------lg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH 436 (753)
T COG1193 367 DIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDE--------LGSGTDPDEGAALAIAILEDLLEKPAKIVATTH 436 (753)
T ss_pred ccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHH--------hhcCCCcchhHHHHHHHHHHHHhcccceehHhh
Confidence 999966 999999999999985455 9999999 999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy13263 421 YHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQ 492 (577)
Q Consensus 421 y~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~ 492 (577)
|.+|..+...+++|.|..|+++. +++.++|+|..|+.+.||||.+|..+|||..||++|+.....
T Consensus 437 ~~elk~~~~~~~~v~nas~~fd~-------etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~ 501 (753)
T COG1193 437 YRELKALAAEREGVENASMEFDA-------ETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGE 501 (753)
T ss_pred HHHHHHHHhcchhhhchhhhhhH-------HHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCc
Confidence 99999999999999999999986 489999999999999999999999999999999999988844
No 20
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.96 E-value=1.1e-28 Score=241.39 Aligned_cols=190 Identities=14% Similarity=0.124 Sum_probs=170.2
Q ss_pred cCcccccCcccccccccccccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccc---
Q psy13263 274 TPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQK--- 350 (577)
Q Consensus 274 i~~GrhPlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~--- 350 (577)
++++|||+++. -+++.|+++....+..+++|||++|||+|+++++.+. ++++.|++|||..+.+..+.+|..+..
T Consensus 2 ~~~~~hp~~~~-~~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~-~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 2 AKNLGHPLIGR-EKRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV-ILAQAGAPVCASSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CcccCCCeecC-CCeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH-HHHHcCCEEecCccCcccceEEEeccchhc
Confidence 57899999983 3578898888777777899999999999999999988 899999999998887777778876543
Q ss_pred ---cchhhhhchhhhHHhhhcCC--CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 351 ---KQKKYVLEVPSKYASKAKSN--HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 351 ---~qStF~~Em~e~~~il~~a~--~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
+.|+|..|+.++..++...+ ...|+|+|| .++||++.++..+.+++++.|.+.++.+|++||++++.
T Consensus 80 l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDE--------p~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~ 151 (199)
T cd03283 80 LRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDE--------IFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELA 151 (199)
T ss_pred cccccChHHHHHHHHHHHHHhccCCCCeEEEEec--------ccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH
Confidence 33889999988888888888 899999999 99999999999999999999988789999999999999
Q ss_pred HHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCC
Q psy13263 426 RRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGI 478 (577)
Q Consensus 426 ~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGl 478 (577)
..+...++|.++||.+.... ++++|+|||.+|+|..|||+++|+++|+
T Consensus 152 ~~~~~~~~v~~~~~~~~~~~-----~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 152 DLLDLDSAVRNYHFREDIDD-----NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred HhhhcCCCeEEEEEEEEEEC-----CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 99988899999999998752 6999999999999999999999999996
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.95 E-value=5.5e-28 Score=235.44 Aligned_cols=191 Identities=24% Similarity=0.366 Sum_probs=173.6
Q ss_pred cCcccccCcccc---cccccccccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeeccc
Q psy13263 274 TPSGCFPDMSEL---LKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQ 349 (577)
Q Consensus 274 i~~GrhPlLe~~---l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG 349 (577)
+++++||+++.. -++++|+|........+++|||++|||+++++++.+. +++|.|+|+|+..+.++. +.+|..++
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~-~~~~~g~~~~~~~~~i~~~dqi~~~~~ 80 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV-LLAQIGCFVPAESASIPLVDRIFTRIG 80 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH-HHHHcCCCccccccccCCcCEEEEEec
Confidence 578999999863 4489999988877778899999999999999999887 899999999999999999 99998776
Q ss_pred c------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH
Q psy13263 350 K------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS 423 (577)
Q Consensus 350 ~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e 423 (577)
. +.|+|..|+.++..++.......++|+|| .+.||++.++..+.+++++.+.+.++.+|++||+++
T Consensus 81 ~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDE--------p~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~ 152 (202)
T cd03243 81 AEDSISDGRSTFMAELLELKEILSLATPRSLVLIDE--------LGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHE 152 (202)
T ss_pred CcccccCCceeHHHHHHHHHHHHHhccCCeEEEEec--------CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHH
Confidence 4 33999999999999998889999999999 999999999999999999999988999999999999
Q ss_pred HHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCC
Q psy13263 424 VARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGI 478 (577)
Q Consensus 424 L~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGl 478 (577)
+...+...+.+.++||.+... .+++.|+|||.+|.+.+|||+.+|++.|+
T Consensus 153 ~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 153 LADLPEQVPGVKNLHMEELIT-----TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred HHHHhhcCCCeEEEEEEEEec-----CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 999988778899999988754 25799999999999999999999999986
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.95 E-value=4.5e-28 Score=235.96 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=167.1
Q ss_pred ccCcccccCccccc-cccccccccccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhcccccccc-ceecc-ceeeecc
Q psy13263 273 QTPSGCFPDMSELL-KYFENAFDHKEA-SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQC-AHFGC-TVIYSEA 348 (577)
Q Consensus 273 ~i~~GrhPlLe~~l-~~~~n~F~~~~a-~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~-a~l~~-d~if~~i 348 (577)
.|++||||+++... ++++|+|..... +..+++|||++|||+|+++++.+. +++|+|+|||+.. ..++. +.+|..+
T Consensus 1 ~~~~~~hp~~~~~~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~-~~~~~G~~vp~~~~~~~~~~~~~~~~l 79 (200)
T cd03280 1 RLREARHPLLPLQGEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLT-LMAQSGLPIPAAEGSSLPVFENIFADI 79 (200)
T ss_pred CCcccCCCEEeccCCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHH-HHHHcCCCccccccccCcCccEEEEec
Confidence 36889999998643 378999998876 458899999999999999999877 9999999999975 67887 9999887
Q ss_pred cc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 349 QK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 349 G~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
|. +.|+|+.+|.+...+........++|+|| .++||++.++..++.++++.|.+.++.+|++||++
T Consensus 80 g~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDE--------p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~ 151 (200)
T cd03280 80 GDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDE--------LGSGTDPVEGAALAIAILEELLERGALVIATTHYG 151 (200)
T ss_pred CchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcC--------CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH
Confidence 74 34999999999888877778889999999 99999999999999999999988899999999999
Q ss_pred HHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCC
Q psy13263 423 SVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGI 478 (577)
Q Consensus 423 eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGl 478 (577)
++..+......+.+.+|.++. +.+.|+|+|++|+++.|||+++|+++||
T Consensus 152 ~l~~~~d~~~~l~~g~l~~~~-------~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 152 ELKAYAYKREGVENASMEFDP-------ETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred HHHHHHhcCCCeEEEEEEEec-------CcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 999888776677777776552 4789999999999999999999999996
No 23
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.68 E-value=8.8e-17 Score=151.94 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=120.6
Q ss_pred cCcccccCcccccccccccccccccccccccCCCCCCCchhHHHHHHHHHHHHH----------hccccccccceeccce
Q psy13263 274 TPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKE----------IQTYLRTQCAHFGCTV 343 (577)
Q Consensus 274 i~~GrhPlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaq----------ig~~VpA~~a~l~~d~ 343 (577)
+..++||.+ +.+|++.....+..+|+|||++|||+|+++++.+. .+++ .|+++|+..+.+
T Consensus 2 i~~~~~~~~-----~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~---- 71 (162)
T cd03227 2 IVLGRFPSY-----FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLAL-GGAQSATRRRSGVKAGCIVAAVSAEL---- 71 (162)
T ss_pred ceeCCCCEE-----EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHH-HhcchhhhccCcccCCCcceeeEEEE----
Confidence 456789877 45666665555677899999999999999999998 8999 999999988777
Q ss_pred eeecccccchhhhhchhhhHHhhhcCC--CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 344 IYSEAQKKQKKYVLEVPSKYASKAKSN--HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 344 if~~iG~~qStF~~Em~e~~~il~~a~--~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
+|+.++- |..+.++..++.++.... ...|+|+|| +++||++.++.+++.++.+++.+ ++.+|++||+
T Consensus 72 i~~~~~l--S~G~~~~~~la~~L~~~~~~~~~llllDE--------p~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~ 140 (162)
T cd03227 72 IFTRLQL--SGGEKELSALALILALASLKPRPLYILDE--------IDRGLDPRDGQALAEAILEHLVK-GAQVIVITHL 140 (162)
T ss_pred ehheeec--cccHHHHHHHHHHHHhcCCCCCCEEEEeC--------CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCC
Confidence 7777776 889999999988887655 789999999 99999999999999999999887 8999999999
Q ss_pred HHHHHHhhcCCCcccccceee
Q psy13263 422 HSVARRLREEPNVAFEYMSYI 442 (577)
Q Consensus 422 ~eL~~l~~~~~~V~n~hm~~~ 442 (577)
+++...+. +.+||...
T Consensus 141 ~~~~~~~d-----~~~~l~~~ 156 (162)
T cd03227 141 PELAELAD-----KLIHIKKV 156 (162)
T ss_pred HHHHHhhh-----hEEEEEEE
Confidence 99988653 34566543
No 24
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.69 E-value=2.4e-09 Score=125.36 Aligned_cols=51 Identities=39% Similarity=0.610 Sum_probs=48.3
Q ss_pred cCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhccccC
Q psy13263 206 QTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESG 256 (577)
Q Consensus 206 ~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkGsn 256 (577)
+||||+|||++|++|||++||||+|+|||+|++||.+++++|+++++++.+
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~ 51 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQ 51 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCC
Confidence 589999999999999999999999999999999999999999999987544
No 25
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.59 E-value=7.1e-09 Score=121.74 Aligned_cols=54 Identities=41% Similarity=0.605 Sum_probs=50.1
Q ss_pred cccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhccccCc
Q psy13263 204 KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGC 257 (577)
Q Consensus 204 ~~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkGsn~ 257 (577)
.++||||+|||++|++|||+++|||+|+|||+|++||++++..|+++++++.+.
T Consensus 6 ~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~ 59 (854)
T PRK05399 6 SKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKS 59 (854)
T ss_pred CCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCC
Confidence 468999999999999999999999999999999999999999999999875433
No 26
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=98.52 E-value=6.8e-09 Score=93.26 Aligned_cols=54 Identities=33% Similarity=0.575 Sum_probs=48.3
Q ss_pred CcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhccccCccCC
Q psy13263 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGE 260 (577)
Q Consensus 207 TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkGsn~~GK 260 (577)
||+++|||++|++|||+|+||++|+||++|.+||+.++..+++.+++.....++
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~ 54 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGK 54 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccc
Confidence 799999999999999999999999999999999999999999999876544443
No 27
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=98.43 E-value=7e-08 Score=112.82 Aligned_cols=54 Identities=44% Similarity=0.637 Sum_probs=51.0
Q ss_pred ccccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhccccC
Q psy13263 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESG 256 (577)
Q Consensus 203 l~~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkGsn 256 (577)
..++||+|+|||++|++|+|+++|||+|+|||+|++||..+++.|++++.++.+
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~ 56 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGN 56 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecCCC
Confidence 357899999999999999999999999999999999999999999999988765
No 28
>KOG0219|consensus
Probab=98.06 E-value=5.3e-07 Score=102.62 Aligned_cols=199 Identities=8% Similarity=-0.028 Sum_probs=142.2
Q ss_pred HHhhhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccccCcccccccccccccccccccccccCCCCCCCch
Q psy13263 234 ELFHMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKE 313 (577)
Q Consensus 234 Elf~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsv 313 (577)
.++++|...-....++.+++|+||+||||++|+++..+++++.|+|-.++..- .++
T Consensus 632 ~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~------------------------i~I 687 (902)
T KOG0219|consen 632 PFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESAT------------------------ISI 687 (902)
T ss_pred CCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcC------------------------Cch
Confidence 34556666665567888999999999999999999999999999874433210 112
Q ss_pred hHHHHHHHHHHHHHhccccccccceecc-ceeeec-------ccccchhhhhchhhhHHhhhcCCCceEEeecccCcccc
Q psy13263 314 YDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSE-------AQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYV 385 (577)
Q Consensus 314 y~k~valI~~imaqig~~VpA~~a~l~~-d~if~~-------iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v 385 (577)
-+.++++.+ . |..+.+ |+. ++|+.++.....++.-..-......++
T Consensus 688 vD~Il~RVG------------------A~D~q~kG~STFM~Emle--ta~Ilr~at~~SliiiDELGRGTSt~D------ 741 (902)
T KOG0219|consen 688 VDGILTRVG------------------AGDSQLKGISTFMAEMLE--TASILRRATKNSLIIIDELGRGTSTYD------ 741 (902)
T ss_pred hhHHHhhhc------------------cchhhhcchHHHHHHHHH--HHHHHHhcCCCcEEEEeccCCCceecc------
Confidence 222222211 1 111111 233 677777776666555566677888899
Q ss_pred cccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCCCccc--ccceeeeecCCCCcceEEEEEeecCC
Q psy13263 386 TPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNVAF--EYMSYIEDKRNDGIDTIVFLYKLVPG 462 (577)
Q Consensus 386 ~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~~V~n--~hm~~~~~~~~~~~~~l~flYkL~~G 462 (577)
.|+++.+.++.-++|+.+.+|... .|...+.||++.-...+.....|.+ .+|- .-.|.-+.|
T Consensus 742 --GfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~ll-------------Y~V~~Gv~d 806 (902)
T KOG0219|consen 742 --GFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLL-------------YKVFEGVCD 806 (902)
T ss_pred --CccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhH-------------HHHhccccc
Confidence 999999999999999999998876 8999999999999987655444443 2222 224556678
Q ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy13263 463 ICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH 497 (577)
Q Consensus 463 ~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~~ 497 (577)
.+-..++.++|...-.+-++.+++.+-++.+....
T Consensus 807 ~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~~ 841 (902)
T KOG0219|consen 807 QSFGIHVAELVGFPEHVIEMAKQKAEELEDELVIK 841 (902)
T ss_pred CcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhhh
Confidence 88899999999999999999888887777766553
No 29
>KOG0217|consensus
Probab=97.74 E-value=7.7e-07 Score=103.21 Aligned_cols=211 Identities=31% Similarity=0.470 Sum_probs=144.5
Q ss_pred CCCCCCCCCCccchhhhhhcccccCCCcchhhhcCCCCCCCCCCCcccccccccCCCcccccc-ccCCCCCCCCccccCC
Q psy13263 36 EDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDEYVPPKAEVESESEHSSGEEELEE-SVEDPTPSSSEAEVTP 114 (577)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p 114 (577)
|...+.+..-++++++..++...+|||+| .++.+.+|+|+ ..+++.|+..+|.++... +.++.+|. .....++
T Consensus 68 e~~~~d~~~~~~~~~~~~k~~~~sDsd~d----~g~k~~~~~~~-~d~~~~D~~~~d~~~~~~ee~~~~~~~-~~~~~~~ 141 (1125)
T KOG0217|consen 68 EAVGDDADIVVESSSEKPKSGLDSDSDED----FGGKEVEEKED-SDEELDDETASDYEVVISEESEGGEPV-CRVSDTD 141 (1125)
T ss_pred hhcCCCccceeeecccCCccccCCCcccc----cCccccccccc-ccccccccccCCcceeccccccCCCcc-cccCCCc
Confidence 33444455667788889999999999999 88999999999 667777777777665322 11222221 1111122
Q ss_pred cccCCccCCCC--------CCCCCCCCCccCCCCCCCCCC---CCcCCCCCCCCC-------CCCCCccccccccccCCC
Q psy13263 115 MKNGNKRGLSS--------KSGQPTKKPKLTAPSTPSTPS---FPVSDTSETTPS-------TSGAQDWSHNHYQFLHPD 176 (577)
Q Consensus 115 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~fl~p~ 176 (577)
......+.++. ..+.+ .......-++|+. ..++.....+.+ .+....|.|+.+.||.++
T Consensus 142 ~r~~~a~~v~k~~~kk~~~~~~~~---~~~~~~~~~~p~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e 218 (1125)
T KOG0217|consen 142 SRSRKAESVSKGKSKKSPSDSGAV---SMGHDLDFNDPMPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLE 218 (1125)
T ss_pred ccchhcccccccccCCCCCCcccc---ccccccccCCCCccccCccccccccccccccccccccchhhhcccchhhccHH
Confidence 21111111111 00010 0000111111111 111111111111 123667889999999999
Q ss_pred CccccCCCCCCCCCCCCCccccCcccccccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhcccc
Q psy13263 177 HILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255 (577)
Q Consensus 177 ~i~D~~~r~p~~p~Yd~sTl~Ipp~~l~~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkGs 255 (577)
.+||+++||++||+|||+||||||+++.++||.++|||++|++|+|+||||++|+|||+|.+||.+++..++|.||+|.
T Consensus 219 ~~RD~~rrr~~dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN 297 (1125)
T KOG0217|consen 219 DVRDALRRRRGDPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVN 297 (1125)
T ss_pred HhhhhhcCCCCCCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
No 30
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0075 Score=56.32 Aligned_cols=116 Identities=8% Similarity=-0.023 Sum_probs=69.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeee----------cccc--cchhhhhch
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYS----------EAQK--KQKKYVLEV 359 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~----------~iG~--~qStF~~Em 359 (577)
+|........+|+|||.+|||.++++++-+. +...-++.++.... .++- ..| ..|.
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~----------~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS--~G~~ 86 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLL----------KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLS--GGQR 86 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCccEEEECCEEcccCCHHHHHhceEEEeeCC--HHHH
Confidence 4454555567899999999999998875432 22222232211000 0000 012 1233
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
..+...+..+....++++|| .-.|.+......+...+.+ +...++.+|++||..+.....
T Consensus 87 ~r~~l~~~l~~~~~i~ilDE--------p~~~lD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 87 QRVALARALLLNPDLLLLDE--------PTSGLDPASRERLLELLRE-LAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHHHHHHHhcCCCEEEEeC--------CCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHh
Confidence 33333344455678999999 8888888666555555544 444468899999999887754
No 31
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.46 E-value=0.0012 Score=66.85 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=55.9
Q ss_pred hhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccccccccccccccCCCCCCCchhH
Q psy13263 237 HMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYD 315 (577)
Q Consensus 237 ~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~ 315 (577)
++|........++.+++|+|++|||++||+++..+++++.|.+ |--...+..++.-|.+-.. .---..|.+.|.
T Consensus 33 ~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~-----~d~~~~~~S~F~ 107 (235)
T PF00488_consen 33 PNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGD-----DDSIESGLSTFM 107 (235)
T ss_dssp -EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES--------SSTTSSSHHH
T ss_pred cceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeeccc-----ccccccccccHH
Confidence 4666665544468899999999999999999999999999987 5444344444433331110 011245688998
Q ss_pred HHHHHHHHHHHHh
Q psy13263 316 EVMDEIKSIEKEI 328 (577)
Q Consensus 316 k~valI~~imaqi 328 (577)
.-+..+..++.+.
T Consensus 108 ~E~~~~~~il~~~ 120 (235)
T PF00488_consen 108 AEMKRLSSILRNA 120 (235)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HhHHHHHhhhhhc
Confidence 8888887666554
No 32
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.01 E-value=0.0099 Score=57.04 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=36.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++..-. ....++..+.+. ++.+|++||..+...
T Consensus 110 ral~~~p~llllDE--------P~~~LD~~~~~-~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 110 RALAQEPPILLLDE--------PTSHLDIAHQI-ELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHhcCCCEEEEeC--------CccCCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34455778999999 77777664443 344455555555 789999999988653
No 33
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.99 E-value=0.019 Score=55.79 Aligned_cols=114 Identities=10% Similarity=-0.068 Sum_probs=63.1
Q ss_pred ccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-c--eeeecccccchhhhhchhhhHHhhhcC
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-T--VIYSEAQKKQKKYVLEVPSKYASKAKS 369 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d--~if~~iG~~qStF~~Em~e~~~il~~a 369 (577)
|........+++|||.+|||+++++++-+. +...-++.+ . .-|..-....|.-+. .++...+...
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----------~p~~G~i~~~g~~i~~~~q~~~LSgGq~--qrv~laral~ 87 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQL----------IPNGDNDEWDGITPVYKPQYIDLSGGEL--QRVAIAAALL 87 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCC----------CCCCcEEEECCEEEEEEcccCCCCHHHH--HHHHHHHHHh
Confidence 333344456799999999999998765332 222333333 1 111100000122222 2222233445
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
....++|+|| --.|-++..-..+...+. .+.++ +..+|++||..+....
T Consensus 88 ~~p~lllLDE--------Pts~LD~~~~~~l~~~l~-~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 88 RNATFYLFDE--------PSAYLDIEQRLNAARAIR-RLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred cCCCEEEEEC--------CcccCCHHHHHHHHHHHH-HHHHcCCCEEEEEECCHHHHHH
Confidence 5668999999 666666555444444443 44444 4789999999877663
No 34
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.99 E-value=0.012 Score=57.28 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=33.9
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
..++|+|| --.|-++..-..+...+ ..+.+.+..+|++||..+....
T Consensus 108 p~llLlDE--------Pt~~LD~~~~~~l~~~l-~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 108 GTLFILDE--------PSTGLHQQDINQLLEVI-KGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred CCEEEEeC--------CcccCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHh
Confidence 68999999 77777776655554444 3444457899999999987543
No 35
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.67 E-value=0.026 Score=58.90 Aligned_cols=129 Identities=9% Similarity=0.047 Sum_probs=71.9
Q ss_pred ccccccccccccccCCCCCCCchhHHHHHHHHHHHH----Hhcccccccc-----ce----ecc-ceeee----------
Q psy13263 291 NAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEK----EIQTYLRTQC-----AH----FGC-TVIYS---------- 346 (577)
Q Consensus 291 n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~ima----qig~~VpA~~-----a~----l~~-d~if~---------- 346 (577)
-+|+.......|.+|||..|||+.+|.+.=|- +-. .++.++|-.+ ++ +|- -...|
T Consensus 43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v 121 (325)
T COG4586 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEV 121 (325)
T ss_pred eeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHH
Confidence 37888888888999999999999999874221 000 1112222220 00 111 12222
Q ss_pred -----cccccchhhhhchhhhHHhhhcC-------------------------CCceEEeecccCcccccccccCCCCcc
Q psy13263 347 -----EAQKKQKKYVLEVPSKYASKAKS-------------------------NHQRVATKKKNVENYVTPECRGTGTND 396 (577)
Q Consensus 347 -----~iG~~qStF~~Em~e~~~il~~a-------------------------~~~sLVLlDEtg~n~v~~LGRGTst~D 396 (577)
++++ +.|..-|..+..++..- ...-+++||| -==|=+..-
T Consensus 122 ~~~Iy~Ipd--~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE--------pTvgLDV~a 191 (325)
T COG4586 122 LKLIYEIPD--DEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE--------PTVGLDVNA 191 (325)
T ss_pred HHHHHhCCH--HHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecC--------CccCcchhH
Confidence 3344 55554333333322111 1456788999 444444444
Q ss_pred hhhHHHHHHHHHHhcCCeEEEecch-HHHHHHhhc
Q psy13263 397 GCVIARVTLEKFLQIGCLTVFATHY-HSVARRLRE 430 (577)
Q Consensus 397 G~ALA~AIlE~L~~~~~~~lfaTHy-~eL~~l~~~ 430 (577)
-.+|--.+-+|-..++|.++.|||| -.|+.++.+
T Consensus 192 q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 192 QANIREFLKEYNEERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred HHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence 4455555555555569999999999 456666654
No 36
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.015 Score=59.92 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=46.4
Q ss_pred hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 357 LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 357 ~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.++..-.+..+...-|+|||| -.-|-++. +....+.++..|.+.+|.+|++||+.+...
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDE--------P~~gvD~~-~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDE--------PFTGVDVA-GQKEIYDLLKELRQEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecC--------CcccCCHH-HHHHHHHHHHHHHHCCCEEEEEeCCcHHhH
Confidence 34555555566678888999999 66666653 566777888999888999999999976655
No 37
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.54 E-value=0.043 Score=52.30 Aligned_cols=123 Identities=9% Similarity=0.073 Sum_probs=64.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccc-----------cceecc---c-eeeecc-ccc-chh
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQ-----------CAHFGC---T-VIYSEA-QKK-QKK 354 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~-----------~a~l~~---d-~if~~i-G~~-qSt 354 (577)
+|........+|+|||.+|||+++++++-+. ...-|...-.. +..++. + .+|... ... .|.
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLL--RPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhcc--CCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCH
Confidence 3444455567899999999999999886542 11112110000 001111 0 000000 000 010
Q ss_pred hhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 355 YVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 355 F~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.|..++.-.+.......++|+|| --.|-++..-..+.. ++..+.+.+..+|++||..+....
T Consensus 100 --G~~qrv~la~al~~~p~~lllDE--------Pt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 100 --GQRQRLGLARALYGNPRILVLDE--------PNSHLDVEGERALNQ-AIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred --HHHHHHHHHHHHhcCCCEEEEEC--------CccccCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHh
Confidence 12223333344566778999999 666666554444433 444555557889999999876653
No 38
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.42 E-value=0.023 Score=55.53 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=35.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+..+....++|+|| --.|-++..-. ..+.++..+.+.++.+|++||..++..
T Consensus 117 ral~~~p~illlDE--------Pt~~LD~~~~~-~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 117 QLLLLEPDLAILDE--------PDSGLDIDALR-LVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHhcCCCEEEEeC--------CCccCCHHHHH-HHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 34455678999999 55555554333 334455555555789999999998776
No 39
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.42 E-value=0.044 Score=51.97 Aligned_cols=114 Identities=6% Similarity=-0.004 Sum_probs=64.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceee-e----------cccc-c-chhhhhc
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIY-S----------EAQK-K-QKKYVLE 358 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if-~----------~iG~-~-qStF~~E 358 (577)
+|........+++|||.+|||+++++++-+. +...-++-++..- . .+|- . .|. .+
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~----------~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~--G~ 87 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLY----------KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSV--GE 87 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCH--HH
Confidence 3444455566799999999999999876432 2222222221000 0 0110 0 011 12
Q ss_pred hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 359 VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 359 m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..++.-.+.......++|+|| --.|-++.--..+. .++..+.+.+..+|++||..+...
T Consensus 88 ~qrl~laral~~~p~illlDE--------P~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 88 RQMVEIARALARNARLLILDE--------PTAALTPAEVERLF-KVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEEC--------CCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHH
Confidence 233333344556778999999 66676655444343 344445555788999999987543
No 40
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.04 Score=52.39 Aligned_cols=122 Identities=8% Similarity=0.068 Sum_probs=62.8
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccc-----------cceecc---c-eeeecc-ccc-chh
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQ-----------CAHFGC---T-VIYSEA-QKK-QKK 354 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~-----------~a~l~~---d-~if~~i-G~~-qSt 354 (577)
+|........+++|||.+|||+++++++-+. ...-|...-.. +..++. + .+|... .+. .|.
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY--DPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCH
Confidence 3444455567899999999999999886542 11112110000 001111 0 000000 000 011
Q ss_pred hhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 355 YVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 355 F~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.|..++.-.........++|+|| --.|-++..-.. .+.++..+.+ ++.+|++||..+....
T Consensus 100 --G~~~rl~la~al~~~p~llllDE--------P~~gLD~~~~~~-l~~~l~~~~~-~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 --GQRQRIAIARALLRDPPILILDE--------ATSALDPETEAL-ILEALRALAK-GKTVIVIAHRLSTIRD 160 (171)
T ss_pred --HHHHHHHHHHHHhcCCCEEEEEC--------CCcCCCHHHHHH-HHHHHHHhcC-CCEEEEEecCHHHHHh
Confidence 12222222334455678999999 666666644333 3333444433 6788999999987754
No 41
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.38 E-value=0.044 Score=52.39 Aligned_cols=122 Identities=5% Similarity=-0.027 Sum_probs=63.8
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccc---------c-ccceecc---c-eeeec-----ccccc
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR---------T-QCAHFGC---T-VIYSE-----AQKKQ 352 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~Vp---------A-~~a~l~~---d-~if~~-----iG~~q 352 (577)
+|........+++|||.+|||+++++++-+. ...-|...- . .+..++. + .+|.. +....
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 4555555567899999999999999886542 111121100 0 0011111 0 01100 00001
Q ss_pred hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 353 KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 353 StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
|. .|...+.-.+.......++|+|| --.|-++..-..+ +.++..+. +++.+|++||+.++...
T Consensus 100 S~--G~~qrv~laral~~~p~~lllDE--------P~~~LD~~~~~~l-~~~l~~~~-~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 100 SG--GERQRLALARILLQDAPIVLLDE--------PTVGLDPITERQL-LSLIFEVL-KDKTLIWITHHLTGIEH 162 (178)
T ss_pred CH--HHHHHHHHHHHHhcCCCEEEEEC--------CcccCCHHHHHHH-HHHHHHHc-CCCEEEEEecCHHHHHh
Confidence 11 12223333344556778999999 6666665443333 33334443 37789999999987653
No 42
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.32 E-value=0.019 Score=54.63 Aligned_cols=120 Identities=7% Similarity=-0.072 Sum_probs=62.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhcc----------ccccccce--ecc-ceeeecccccchhhhhc
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQT----------YLRTQCAH--FGC-TVIYSEAQKKQKKYVLE 358 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~----------~VpA~~a~--l~~-d~if~~iG~~qStF~~E 358 (577)
+|+.......+++|||.+|||+++++++-+. ..+-|. ||+....- ..+ +.+........|.- +
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G--~ 96 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLW--PWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGG--E 96 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHH--H
Confidence 3444455566899999999999999886542 112221 22222110 011 11110001111221 2
Q ss_pred hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 359 VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 359 m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
-.++.-.+.......++|+|| --.|-++..-. .+.+.|.+.+..+|++||+.++..+
T Consensus 97 ~~rv~laral~~~p~~lllDE--------Pt~~LD~~~~~----~l~~~l~~~~~tiiivsh~~~~~~~ 153 (166)
T cd03223 97 QQRLAFARLLLHKPKFVFLDE--------ATSALDEESED----RLYQLLKELGITVISVGHRPSLWKF 153 (166)
T ss_pred HHHHHHHHHHHcCCCEEEEEC--------CccccCHHHHH----HHHHHHHHhCCEEEEEeCChhHHhh
Confidence 222222334456778999999 55555544333 2333343336789999999876543
No 43
>KOG0220|consensus
Probab=95.22 E-value=0.0073 Score=69.08 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=29.7
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccCcccc
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh 279 (577)
++.+++|+||+||||+|||++..+||+|.|++
T Consensus 622 ~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~ 653 (867)
T KOG0220|consen 622 NFLIITGPNMSGKSTYLKQVALCQIMAQIGSY 653 (867)
T ss_pred ceEEEECCCCCcchHHHHHHHHHHHHHHhccC
Confidence 56678999999999999999999999999986
No 44
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.22 E-value=0.046 Score=50.87 Aligned_cols=110 Identities=4% Similarity=-0.117 Sum_probs=60.9
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccc--cchhhhhchhhhHHhhhcC
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQK--KQKKYVLEVPSKYASKAKS 369 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~--~qStF~~Em~e~~~il~~a 369 (577)
+|........+|+|||.+|||+++++++-+. +...-++-++.. ..++- ..|.-+ ..++.-.+...
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~----------~~~~G~i~~~~~-~~i~~~~~lS~G~--~~rv~laral~ 86 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGEL----------EPDEGIVTWGST-VKIGYFEQLSGGE--KMRLALAKLLL 86 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC----------CCCceEEEECCe-EEEEEEccCCHHH--HHHHHHHHHHh
Confidence 4444455566799999999999998764331 223333333100 00110 012222 22333333445
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
....++|+|| --.|-++..-.. +.+.|.+.++.+|++||..+...
T Consensus 87 ~~p~illlDE--------P~~~LD~~~~~~----l~~~l~~~~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDE--------PTNHLDLESIEA----LEEALKEYPGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeC--------CccCCCHHHHHH----HHHHHHHcCCEEEEEECCHHHHH
Confidence 5678999999 666665543332 23333333678999999987664
No 45
>KOG0218|consensus
Probab=95.16 E-value=0.0073 Score=69.07 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=62.4
Q ss_pred HhhhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccccccccccccccCCCCCCCch
Q psy13263 235 LFHMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKE 313 (577)
Q Consensus 235 lf~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsv 313 (577)
+.++|..+...--.|.+++|+||+|||.+.||+++..||+|.|.| |.-+..+..|++-|.+-.|...++ -|.++
T Consensus 818 fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~-----~grST 892 (1070)
T KOG0218|consen 818 FVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNII-----NGRST 892 (1070)
T ss_pred cCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccc-----cchhH
Confidence 356777776666678899999999999999999999999999998 655556666777776544433332 24677
Q ss_pred hHHHHHHHHHHH
Q psy13263 314 YDEVMDEIKSIE 325 (577)
Q Consensus 314 y~k~valI~~im 325 (577)
|+--+-.+.+|+
T Consensus 893 Fm~Emldt~eil 904 (1070)
T KOG0218|consen 893 FMVEMLDTLEIL 904 (1070)
T ss_pred HHHHHHHHHHHH
Confidence 877665554443
No 46
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.037 Score=52.76 Aligned_cols=122 Identities=8% Similarity=0.047 Sum_probs=62.9
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccc----------cccceecc---c-eeeecc--ccc--ch
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR----------TQCAHFGC---T-VIYSEA--QKK--QK 353 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~Vp----------A~~a~l~~---d-~if~~i--G~~--qS 353 (577)
+|........+|+|||.+|||+++++++-+. ...-|...- ..+..++. + .+|... ... .|
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLL--KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 4444455567799999999999999886432 111111100 00011111 0 001000 000 01
Q ss_pred hhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 354 KYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 354 tF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
. .|.+++.-.+..+....++|+|| --.|-++.....+. .+++.+.+++..+|++||+.++..
T Consensus 98 ~--G~~qrv~laral~~~p~illlDE--------Pt~~LD~~~~~~l~-~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 G--GMKQRLALAQALLHDPELLILDE--------PTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred H--HHHHHHHHHHHHHcCCCEEEEeC--------CccCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHH
Confidence 1 12223333344556778999999 55565554443333 334445544778999999987665
No 47
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.052 Score=51.94 Aligned_cols=56 Identities=16% Similarity=0.049 Sum_probs=37.9
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.-.+......-++++|| --.|-++.- ......++..+.+. +..+|++||..++..
T Consensus 109 ~~la~al~~~p~llilDE--------P~~~LD~~~-~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 109 VALARALAMDPDVLLLDE--------PTSALDPIT-RREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHCCCCEEEEeC--------CcccCCHHH-HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 333445566778999999 566655543 34445556666665 688999999987765
No 48
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.036 Score=56.50 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=40.9
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
...|++||| .=.|-+. |++.+-.-.++.|...+.-+|+.|||.+|.++..
T Consensus 162 ePkl~ILDE--------~DSGLDI-dalk~V~~~i~~lr~~~~~~liITHy~rll~~i~ 211 (251)
T COG0396 162 EPKLAILDE--------PDSGLDI-DALKIVAEGINALREEGRGVLIITHYQRLLDYIK 211 (251)
T ss_pred CCCEEEecC--------CCcCccH-HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcC
Confidence 568999999 6666654 5667777778888888999999999999998765
No 49
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.88 E-value=0.033 Score=54.29 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=34.3
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+....++|+|| -..|-++..-..+...++..+.+.+..+|++||..++...
T Consensus 143 ~~~p~llllDE--------P~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 143 YSDADIYLLDD--------PLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred hcCCCEEEEeC--------ccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 34678999999 6666666444444444444444446899999999887764
No 50
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.52 E-value=0.078 Score=52.93 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=40.6
Q ss_pred chhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh---cCCeEEEecchHHHHHHhh
Q psy13263 358 EVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ---IGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 358 Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~---~~~~~lfaTHy~eL~~l~~ 429 (577)
|-.+.+..++..+...|+|-|| =|.-.| -.+||-|+.-|.+ .|..+|+|||+.+|.+-..
T Consensus 142 EQQRvaIARAiV~~P~vLlADE-----------PTGNLD-p~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADE-----------PTGNLD-PDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecC-----------CCCCCC-hHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3344444445556678888999 233333 2678888765544 4899999999999988654
No 51
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.45 E-value=0.22 Score=48.53 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=36.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
++..+....++|+|| --.|-++..-..+ +.++..+.+.+..+|++||..+....
T Consensus 138 a~al~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 138 ALALLGNPDLLILDE--------PTNGLDPDGIKEL-RELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHHHhcCCCEEEECC--------CcccCCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 344556678999999 6666655443333 34555555557889999999887653
No 52
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.38 E-value=0.21 Score=49.44 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=38.3
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
..+.-.+......-|+|+|| --.|-++.... ..+.++..+.+. +..+|++||+.+....
T Consensus 153 qrl~la~al~~~p~llllDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 212 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADE--------PTGNLDRQTGD-KIADLLFSLNREHGTTLILVTHDLQLAAR 212 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeC--------CCCCCCHHHHH-HHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 33333344456678999999 66676664433 344445555544 7899999999886543
No 53
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.33 E-value=0.099 Score=51.53 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=36.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++... ...+.++..+.+.+..+||+||..+...
T Consensus 149 aral~~~p~llllDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 149 ARLWLSPAPLWLLDE--------PYANLDLEGI-TLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred HHHHhcCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 344555668999999 5566655533 3444455555566789999999987664
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.079 Score=52.61 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=38.0
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.-.+.......|+|+|| --.|-++.--..+ +.++..+.+. +..+|++||..+...
T Consensus 148 rv~la~al~~~p~lllLDE--------P~~~LD~~~~~~l-~~~l~~~~~~~~~tvii~sH~~~~~~ 205 (233)
T cd03258 148 RVGIARALANNPKVLLCDE--------ATSALDPETTQSI-LALLRDINRELGLTIVLITHEMEVVK 205 (233)
T ss_pred HHHHHHHHhcCCCEEEecC--------CCCcCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3333344556678999999 7777766544433 3444455554 789999999987654
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.079 Score=51.76 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=35.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.--..+. .+++.+.+.++.+|++||+.++..
T Consensus 140 a~al~~~p~~lllDE--------P~~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 140 IAAVIHDPELLILDE--------PFSGLDPVNVELLK-DVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred HHHHhcCCCEEEEeC--------CCcCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHH
Confidence 344455668999999 66666665433333 344455555789999999987654
No 56
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.28 E-value=0.072 Score=55.05 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=38.2
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..-|++||| -..|=+|.---+|=-+|.+ |.+.|+.+||+||-++=.+
T Consensus 148 ePeLlILDE--------PFSGLDPVN~elLk~~I~~-lk~~GatIifSsH~Me~vE 194 (300)
T COG4152 148 EPELLILDE--------PFSGLDPVNVELLKDAIFE-LKEEGATIIFSSHRMEHVE 194 (300)
T ss_pred CCCEEEecC--------CccCCChhhHHHHHHHHHH-HHhcCCEEEEecchHHHHH
Confidence 668999999 8999999987777766664 5666999999999976544
No 57
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.26 E-value=0.096 Score=54.80 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=44.7
Q ss_pred hhhhhchhhhHH-hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcC-CeEEEecchHHHHHHh
Q psy13263 353 KKYVLEVPSKYA-SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRL 428 (577)
Q Consensus 353 StF~~Em~e~~~-il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~-~~~lfaTHy~eL~~l~ 428 (577)
++|..-|++-.. .........|++||| --.|=++. +....+.++..|.+.+ ..+|++||+.+-....
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDE--------Pt~GLDp~-~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDE--------PTSGLDPE-SRREIWELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECC--------CCcCCCHH-HHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 446655555332 344556669999999 55555553 3445566677777765 8999999998776654
No 58
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.26 E-value=0.072 Score=51.18 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=35.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++..-..+.. ++..+.+.+..+|++||+.+...
T Consensus 117 ~al~~~p~llllDE--------P~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 117 RWLARDPRVLILDE--------PTRGVDVGAKAEIYR-LIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred HHHccCCCEEEECC--------CCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHH
Confidence 34455778999999 667776655444443 44455555788999999975443
No 59
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.18 E-value=0.23 Score=48.44 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=35.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++..-..+ +.++..+.+.+..+|++||+.+...
T Consensus 139 ral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 139 AALLSGKDLLIFDE--------PTSGLDYKNMERV-GELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHhCCCEEEEeC--------CCccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 33455668999999 6667766544333 4555556555788999999987654
No 60
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.11 E-value=0.2 Score=48.74 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=36.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH--HHHHhh
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS--VARRLR 429 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e--L~~l~~ 429 (577)
+..+....++|+|| --.|-++..-. ....++..+.+++..+|++||..+ +..+..
T Consensus 124 ral~~~p~illlDE--------P~~~LD~~~~~-~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 180 (194)
T cd03213 124 LELVSNPSLLFLDE--------PTSGLDSSSAL-QVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180 (194)
T ss_pred HHHHcCCCEEEEeC--------CCcCCCHHHHH-HHHHHHHHHHhCCCEEEEEecCchHHHHHhcC
Confidence 33455667999999 77777765443 344455556555788999999974 444443
No 61
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.09 Score=51.83 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=35.7
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~ 426 (577)
++...+.......++|+|| --.|-++.--..+.. ++..+.+ .+..+|++||+.+...
T Consensus 139 rl~la~al~~~p~lllLDE--------Pt~~LD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~~~ 196 (220)
T cd03293 139 RVALARALAVDPDVLLLDE--------PFSALDALTREQLQE-ELLDIWRETGKTVLLVTHDIDEAV 196 (220)
T ss_pred HHHHHHHHHcCCCEEEECC--------CCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHH
Confidence 3333344455678999999 666666554443333 3344443 3788999999987543
No 62
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.98 E-value=0.16 Score=49.32 Aligned_cols=50 Identities=2% Similarity=-0.059 Sum_probs=35.9
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
....++++|| .-.|-++..-..+.. ++..+...++.+|++||..++...+
T Consensus 115 ~~p~llilDE--------p~~~LD~~~~~~i~~-~L~~~~~~g~tiIiiSH~~~~~~~a 164 (178)
T cd03239 115 KPSPFYVLDE--------IDAALDPTNRRRVSD-MIKEMAKHTSQFIVITLKKEMFENA 164 (178)
T ss_pred CCCCEEEEEC--------CCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHhhC
Confidence 4558899999 777777776655554 3444555468999999999877643
No 63
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.87 E-value=0.32 Score=47.41 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=34.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++.. ....+.++..+.+.+..+|++||..+...
T Consensus 147 a~al~~~p~llllDE--------P~~~LD~~~-~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 147 ARALAMNPKVMLFDE--------PTSALDPEL-VGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred HHHHhcCCCEEEEeC--------CccCCCHHH-HHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 344455668999999 555555433 33444455555555778999999987654
No 64
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.85 E-value=0.052 Score=64.15 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.5
Q ss_pred hhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcc-ccccccccccc
Q psy13263 237 HMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMS-ELLKYFENAFD 294 (577)
Q Consensus 237 ~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe-~~l~~~~n~F~ 294 (577)
++|..+.. ...+.+++|+|++||||+||+++..+++++.|+| |.-+ ..+.+|.+-|.
T Consensus 318 pndi~l~~-~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~ 376 (782)
T PRK00409 318 PKDISLGF-DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFA 376 (782)
T ss_pred CceeEECC-CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEE
Confidence 34444433 2356789999999999999999999999999987 5443 34556655554
No 65
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=0.1 Score=50.58 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=34.3
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS 423 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e 423 (577)
........++|+|| -..|-++..-. ..+.++..+.+.++.+|++||+.+
T Consensus 121 ~al~~~p~vlllDE--------P~~~LD~~~~~-~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 121 VELAAKPSILFLDE--------PTSGLDSQAAY-NIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHhcCCcEEEEeC--------CCcCCCHHHHH-HHHHHHHHHHHcCCEEEEEEcCCh
Confidence 34455678999999 67776655443 444455566666789999999976
No 66
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.13 Score=50.64 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=37.6
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
++.-.+.......|+|+|| --.|-++.--. ..+.++..+.+. +..+|++||..+....
T Consensus 139 r~~la~al~~~p~llllDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~~tvi~~tH~~~~~~~ 197 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDE--------PTIGLDPQTRA-HVWEYIEKLKEEFGMTILLTTHYMEEAEQ 197 (220)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CccCCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3333344556678999999 66666664433 333445555554 7889999999876553
No 67
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.33 E-value=0.14 Score=51.20 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=40.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+..+.+.+.+||| --.|-|+.--++|. |++..|.+.|+.+|++||-.=|..
T Consensus 141 ~~rf~~~GiYiLDE--------PEa~LSp~RQlell-a~l~~la~sGaQ~IiATHSPiLlA 192 (233)
T COG3910 141 HNRFNGQGIYILDE--------PEAALSPSRQLELL-AILRDLADSGAQIIIATHSPILLA 192 (233)
T ss_pred HHHhccCceEEecC--------ccccCCHHHHHHHH-HHHHHHHhcCCeEEEEecChhhee
Confidence 34566789999999 66666766666654 788899999999999999985543
No 68
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.43 Score=47.43 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=36.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+..+....++|+|| --.|-++.-- ...+.++..+.+. +..+|++||..+...
T Consensus 156 a~al~~~p~llllDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 156 ARALMQQPKLILADE--------PVASLDPASS-RQVMDLLKRINREEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHhcCCCEEEEeC--------ccccCCHHHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 344456678999999 6666665433 3344555566554 788999999987765
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.49 Score=47.10 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=37.4
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
++...+.......++|+|| --.|-++.- ....+.++..+.+. +..+|++||..+...
T Consensus 144 rv~ia~al~~~p~llllDE--------Pt~~LD~~~-~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 144 RVALARALALDPELLLYDE--------PTAGLDPIA-SGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HHHHHHHHhcCCCEEEecC--------CcccCCHHH-HHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 3333444556778999999 666666543 33334455556554 789999999987654
No 70
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.18 E-value=0.14 Score=51.10 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=34.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++.- ......+++.+.+.+..+|++||+.+...
T Consensus 153 aral~~~p~llilDE--------Pt~~LD~~~-~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 205 (242)
T PRK11124 153 ARALMMEPQVLLFDE--------PTAALDPEI-TAQIVSIIRELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred HHHHhcCCCEEEEcC--------CCCcCCHHH-HHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 344455668999999 656665533 33333445555555788999999987764
No 71
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.12 E-value=0.44 Score=47.30 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=37.3
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l 427 (577)
++.-.+.......++|+|| --.|-++..- .....++..+.+ .+..+|++||..+....
T Consensus 145 rv~laral~~~p~llllDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~~~tvii~sh~~~~~~~ 203 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDE--------ITSALDESNK-HNVNEIIHRYVREQNIAVLWVTHDKDEINH 203 (225)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence 3333344556778999999 6666665443 333344445544 37899999999887653
No 72
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.51 Score=47.49 Aligned_cols=53 Identities=4% Similarity=0.053 Sum_probs=36.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.........|+|+|| --.|-++.--. ..+.++..+.+. ++.+|++||+.+...
T Consensus 165 a~al~~~p~llllDE--------Pt~~LD~~~~~-~l~~~L~~~~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 165 ARCMVTQPEILMLDE--------PAAGLNPKETK-ELDELIAELRNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHhcCCCEEEEcC--------CccCCCHHHHH-HHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 344556778999999 65665555433 334555566665 789999999987764
No 73
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.93 E-value=0.22 Score=51.94 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=35.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| --.|=++.-. ...+.++..+.+.+..+|++||+.+...
T Consensus 137 ~al~~~p~lllLDE--------Pt~gLD~~~~-~~l~~~l~~~~~~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 137 ASLIHQPDVLFLDE--------PTTGLDPRTR-RAIWDYIRALKEEGVTILLTTHYMEEAD 188 (302)
T ss_pred HHHhcCCCEEEEeC--------CCcCCCHHHH-HHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 34455678999999 6666665443 3444555666655889999999987655
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.2 Score=50.15 Aligned_cols=56 Identities=18% Similarity=0.065 Sum_probs=36.6
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.-++.......++|+|| --.|-++.-- ...+.++..+.+. +..+|++||+.+...
T Consensus 145 l~la~al~~~p~llllDE--------P~~~LD~~~~-~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 201 (239)
T cd03296 145 VALARALAVEPKVLLLDE--------PFGALDAKVR-KELRRWLRRLHDELHVTTVFVTHDQEEAL 201 (239)
T ss_pred HHHHHHHhcCCCEEEEcC--------CcccCCHHHH-HHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 333344455668999999 6666666443 3344455566554 788999999987543
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.87 E-value=0.15 Score=55.82 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=32.2
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
....++|||| --.|=++.--. -...++..|.+.+..+|++||+.++..
T Consensus 156 ~~P~iLLLDE--------PtsgLD~~~~~-~l~~lL~~l~~~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 156 QATPVLLLDE--------PTASLDINHQV-RTLELVRRLVDDGKTAVAAIHDLDLAA 203 (402)
T ss_pred cCCCEEEEEC--------CcccCCHHHHH-HHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3678999999 44444443222 233555666655778999999988875
No 76
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.75 E-value=0.23 Score=49.37 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=35.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+.......++|+|| --.|-++.- ....+.++..+.+.+..+|++||..+....
T Consensus 155 a~al~~~p~llllDE--------Pt~~LD~~~-~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 208 (236)
T cd03219 155 ARALATDPKLLLLDE--------PAAGLNPEE-TEELAELIRELRERGITVLLVEHDMDVVMS 208 (236)
T ss_pred HHHHhcCCCEEEEcC--------CcccCCHHH-HHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 344455678999999 555555433 333444555555557889999999887643
No 77
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.75 E-value=0.24 Score=49.46 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=39.1
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l 427 (577)
++.-.+.......++|+|| --.|-++.--..+.. ++..+.+ .+..+|++||..+....
T Consensus 140 rl~laral~~~p~llllDE--------P~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~ 198 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDE--------PTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIEA 198 (236)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHhh
Confidence 3333444566778999999 667766665555544 3444554 47889999999987653
No 78
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.75 E-value=0.085 Score=51.11 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=33.1
Q ss_pred hhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccc
Q psy13263 250 SYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAF 293 (577)
Q Consensus 250 ~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F 293 (577)
.+++|+|++||||++|+++..+++++.|++ |.-...+.++...|
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il 46 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIF 46 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEE
Confidence 457999999999999999999999999987 33333344444433
No 79
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.61 E-value=0.24 Score=48.86 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=35.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.--..+ +.++..+.+.+..+|++||+.+...
T Consensus 136 aral~~~p~llllDE--------P~~~LD~~~~~~l-~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 136 AIALLNHPKLLILDE--------PTNGLDPIGIQEL-RELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHhcCCCEEEECC--------CccCCCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 344556778999999 6666665544433 4444455555778999999988664
No 80
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.58 E-value=0.17 Score=49.67 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=35.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+......-++|+|| --.|-++..-. ..+.++..+.+.++.+|++||..+...
T Consensus 148 aral~~~p~illlDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 148 ARALVHDPPVLLLDE--------PTTGLDVMATR-ALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHHHhcCCCEEEEcC--------CCcCCCHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 344456668999999 66666654433 334445555555789999999987654
No 81
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.56 E-value=0.16 Score=49.71 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=38.3
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
++.-++......-|+|+|| --.|-++..-..| +.++..+.+.+..+|++||..+....
T Consensus 135 rl~la~al~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 135 RVALARLLVSNRPIWILDE--------PTAALDAAAVALF-AELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 3333344555678999999 6666666555444 34445555558899999999876653
No 82
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.55 E-value=0.47 Score=46.18 Aligned_cols=60 Identities=5% Similarity=-0.077 Sum_probs=37.6
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
.++.-.+......-++|+|| --.|-+...-..+...+ ..+.+.++.+|++||..++.+.+
T Consensus 134 ~rv~laral~~~p~~lilDE--------P~~~LD~~~~~~l~~~l-~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDE--------PLVALDELSLLTIITKI-QEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeC--------CCcccCHHHHHHHHHHH-HHHHHcCCEEEEEeCCchhcccc
Confidence 34443444556778999999 66665544433333333 33444578999999998877643
No 83
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=92.52 E-value=0.12 Score=52.24 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=26.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIK 322 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~ 322 (577)
+|...+....|+.|||..|||+.++.++-+-
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 6777777788999999999999999998654
No 84
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.50 E-value=0.46 Score=48.65 Aligned_cols=57 Identities=5% Similarity=-0.115 Sum_probs=37.0
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.-.+.......|+|+|| -..|-++.. ....+.++..+.+. +..+|++||..+...
T Consensus 150 rl~laral~~~p~lllLDE--------P~~gLD~~~-~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 207 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDE--------STSMLDPKG-KREIKKIMVDLRKTRKKTLISITHDMDEAI 207 (271)
T ss_pred HHHHHHHHHcCCCEEEEeC--------CcccCCHHH-HHHHHHHHHHHHHhcCcEEEEEEechhHHh
Confidence 3333444566778999999 666666633 33344455555554 478999999987664
No 85
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.47 E-value=0.23 Score=49.44 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=36.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l 427 (577)
.+.......++|+|| --.|-++.-- ...+.++..+.+ .+..+|++||+.+....
T Consensus 157 a~al~~~p~lllLDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 157 ARALVNNPRLVLADE--------PTGNLDARNA-DSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred HHHHhcCCCEEEEeC--------CCCCCCHHHH-HHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 344456778999999 6666665433 334445555554 37899999999887653
No 86
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.29 Score=48.80 Aligned_cols=155 Identities=9% Similarity=0.043 Sum_probs=76.6
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccCcccccCccccccccccccccc-ccccccccCCCCCCCchhHHHHHHHHHHHH
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHK-EASSAGNIIPKAGVDKEYDEVMDEIKSIEK 326 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~~~~n~F~~~-~a~~~~I~gPN~gGKsvy~k~valI~~ima 326 (577)
.+++++|+|-.|||++||.++. ++-..+.+-.+... .+ .-... -.+....+|=+.|.|+..- ....+. +-.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG--Ll~p~~G~v~~~~~--~i--~~~~~~~~~~l~yLGH~~giK~eLT-a~ENL~-F~~ 100 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG--LLRPDAGEVYWQGE--PI--QNVRESYHQALLYLGHQPGIKTELT-ALENLH-FWQ 100 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc--ccCCCCCeEEecCC--CC--ccchhhHHHHHHHhhccccccchhh-HHHHHH-HHH
Confidence 4677899999999999999864 22222222111100 00 00111 1133446677777776532 222233 333
Q ss_pred Hhccc-----cccccceecc-ceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhH
Q psy13263 327 EIQTY-----LRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVI 400 (577)
Q Consensus 327 qig~~-----VpA~~a~l~~-d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~AL 400 (577)
.+... +++.-+.+++ +..-.-.+. .|.=+. ++++..+--.+...|-|+|| -..+-+ .+|.++
T Consensus 101 ~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~-LSAGQq--RRvAlArL~ls~~pLWiLDE--------P~taLD-k~g~a~ 168 (209)
T COG4133 101 RFHGSGNAATIWEALAQVGLAGLEDLPVGQ-LSAGQQ--RRVALARLWLSPAPLWILDE--------PFTALD-KEGVAL 168 (209)
T ss_pred HHhCCCchhhHHHHHHHcCcccccccchhh-cchhHH--HHHHHHHHHcCCCCceeecC--------cccccC-HHHHHH
Confidence 33322 2222233444 221111111 021111 12222233467789999999 333332 246666
Q ss_pred HHHHHHHHHhcCCeEEEecchH
Q psy13263 401 ARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 401 A~AIlE~L~~~~~~~lfaTHy~ 422 (577)
..+++..=+.++-.||+|||..
T Consensus 169 l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 169 LTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHhcCCCEEEEecCCc
Confidence 6666655555588999999975
No 87
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.41 E-value=0.47 Score=46.61 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=32.0
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
....++|+|| --.|-++..-..+.. +++.+.+ ++.+|++||..++.+.
T Consensus 134 ~~~~illlDE--------P~~~LD~~~~~~l~~-~l~~~~~-~~tiIiitH~~~~~~~ 181 (197)
T cd03278 134 RPSPFCVLDE--------VDAALDDANVERFAR-LLKEFSK-ETQFIVITHRKGTMEA 181 (197)
T ss_pred CCCCEEEEeC--------CcccCCHHHHHHHHH-HHHHhcc-CCEEEEEECCHHHHhh
Confidence 3447999999 766766665444443 3344433 6779999999987553
No 88
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.29 E-value=0.19 Score=49.08 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=34.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+......-++|+|| --.|-++..-.. .+.++..+.+. ++.+|++||..+...
T Consensus 143 ral~~~p~llllDE--------Pt~~LD~~~~~~-l~~~l~~~~~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 143 RAIVREPKVFLMDE--------PLSNLDAKLRVQ-MRAELKRLQQRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred HHHhcCCCEEEEcC--------CcccCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 34455668999999 556655544333 33445555554 789999999986554
No 89
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.21 E-value=0.22 Score=49.78 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=35.4
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.--..+.. ++..+.+.+..+|++||+.+...
T Consensus 149 ~al~~~p~llllDE--------P~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~ 200 (240)
T PRK09493 149 RALAVKPKLMLFDE--------PTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAE 200 (240)
T ss_pred HHHhcCCCEEEEcC--------CcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHH
Confidence 33455668999999 666666654444433 45555555778999999988765
No 90
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=92.18 E-value=0.23 Score=50.34 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=34.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.......++|+|| --.|-++..-..|. .++..|.+.++.+|++||+.+....
T Consensus 165 ral~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 165 RALAMEPEVLLFDE--------PTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARH 217 (257)
T ss_pred HHHhcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34455667999999 55555544333333 3444555558899999999877653
No 91
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.13 E-value=0.66 Score=46.57 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=35.3
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.. ......++..+.+. +..+|++||+.+...
T Consensus 144 ~al~~~p~llllDE--------Pt~~LD~~~-~~~l~~~l~~~~~~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 144 RTLANNPEVLLLDE--------PTSALDPTS-TEIIEELIVKLKNKMNLTVIWITHNMEQAK 196 (241)
T ss_pred HHHhcCCCEEEEeC--------CcccCCHHH-HHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 33455668999999 666666543 33444555566654 789999999988654
No 92
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.12 E-value=0.2 Score=48.64 Aligned_cols=58 Identities=5% Similarity=0.003 Sum_probs=37.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+.-.+.......++|+|| --.|-++.-- ...+.++..+.+.+..+|++||..+....
T Consensus 131 rl~la~al~~~p~~lllDE--------P~~~LD~~~~-~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 131 IVAIARLIACQSDLWLLDE--------VETNLSKENR-DLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 3333444556778999999 6666665543 33334444444557899999999876554
No 93
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.12 E-value=0.079 Score=52.80 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=52.3
Q ss_pred hhhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccccccccccccccCCCCCCCchh
Q psy13263 236 FHMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEY 314 (577)
Q Consensus 236 f~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy 314 (577)
.++|..+....-.+.+++|+|++||||+||+++...++++.|.+ |.-...+.+++..|..-.... .-..+.+.|
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~-----si~~~~S~f 92 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRE-----SVSSGQSAF 92 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCcc-----ChhhccchH
Confidence 45677766543366778999999999999999987777888875 333333445544433211110 011234677
Q ss_pred HHHHHHHHHHHH
Q psy13263 315 DEVMDEIKSIEK 326 (577)
Q Consensus 315 ~k~valI~~ima 326 (577)
..-+..+..+++
T Consensus 93 ~~el~~l~~~l~ 104 (213)
T cd03281 93 MIDLYQVSKALR 104 (213)
T ss_pred HHHHHHHHHHHH
Confidence 777766663333
No 94
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.03 E-value=0.79 Score=46.74 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=36.4
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......++|+|| --.|-++..-. ..+.++..+.+. ++.+|++||..+...
T Consensus 155 rv~laral~~~p~lllLDE--------Pt~~LD~~~~~-~~~~~l~~l~~~~~~tiii~sH~~~~i~ 212 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDE--------PTSALDIAHQV-DVLALVHRLSQERGLTVIAVLHDINMAA 212 (265)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3333344556778999999 55555544332 234455556554 789999999987654
No 95
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=92.00 E-value=0.35 Score=47.55 Aligned_cols=50 Identities=2% Similarity=-0.193 Sum_probs=35.7
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHH
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVAR 426 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~ 426 (577)
.....++|+|| .-.|.+......+...+.+..... ++.+|++||..+...
T Consensus 129 ~~~p~illlDE--------P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 129 VMESPFRCLDE--------FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCCEEEecC--------cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc
Confidence 46678999999 888888777666666555544431 357899999987554
No 96
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.32 Score=48.73 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=35.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++.. ......++..+.+. ++.+|++||..+...
T Consensus 147 aral~~~p~llllDE--------Pt~~LD~~~-~~~l~~~L~~~~~~~g~tvii~sH~~~~~~ 200 (242)
T cd03295 147 ARALAADPPLLLMDE--------PFGALDPIT-RDQLQEEFKRLQQELGKTIVFVTHDIDEAF 200 (242)
T ss_pred HHHHhcCCCEEEecC--------CcccCCHHH-HHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 344455678999999 555555533 33444555566554 788999999987543
No 97
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.80 E-value=0.27 Score=50.98 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=70.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHH-------------------HHHHhcccccccc-ceecc---ceeeecc
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKS-------------------IEKEIQTYLRTQC-AHFGC---TVIYSEA 348 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~-------------------imaqig~~VpA~~-a~l~~---d~if~~i 348 (577)
+|...+....+|+|||.+|||+.+|.++.+.. -.|+.=.|||... .-+++ |.|. +
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~--~ 99 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVL--L 99 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHh--h
Confidence 44445555677999999999999999865321 1344445787763 33333 3332 3
Q ss_pred cc--cchhhh---------------------------hch-----hhhHHhhhcCCCceEEeecccCcccccccccCCCC
Q psy13263 349 QK--KQKKYV---------------------------LEV-----PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGT 394 (577)
Q Consensus 349 G~--~qStF~---------------------------~Em-----~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst 394 (577)
|+ .++.|. .|+ ......+..+...-++|+|| =|+.
T Consensus 100 GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE-----------PTs~ 168 (258)
T COG1120 100 GRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE-----------PTSH 168 (258)
T ss_pred cCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC-----------Cccc
Confidence 32 122232 011 11111223344678899999 3544
Q ss_pred cchhhHHHH-----HHHHHHhc-CCeEEEecchHHHHHHhh
Q psy13263 395 NDGCVIARV-----TLEKFLQI-GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 395 ~DG~ALA~A-----IlE~L~~~-~~~~lfaTHy~eL~~l~~ 429 (577)
-| |... ++..|.+. +..+|+++|+..++....
T Consensus 169 LD---i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 169 LD---IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred cC---HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 44 4433 34556644 788999999999887543
No 98
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.78 E-value=0.47 Score=46.97 Aligned_cols=56 Identities=7% Similarity=-0.017 Sum_probs=36.7
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+......-++|+|| --.|-++.-- ...+.++..+.+.+..+|++||..+...
T Consensus 142 l~la~al~~~p~llllDE--------Pt~~LD~~~~-~~~~~~l~~~~~~~~tii~~sH~~~~~~ 197 (232)
T cd03218 142 VEIARALATNPKFLLLDE--------PFAGVDPIAV-QDIQKIIKILKDRGIGVLITDHNVRETL 197 (232)
T ss_pred HHHHHHHhcCCCEEEecC--------CcccCCHHHH-HHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 333444556778999999 6666666443 3344455566655778999999986443
No 99
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=91.74 E-value=0.34 Score=51.81 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=36.4
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
........|+|+|| --.|-++.-...+ +.++..|.+.+..+|++||+.+...
T Consensus 185 ~aL~~~P~lLiLDE--------Pt~gLD~~~r~~l-~~~l~~l~~~g~tilisSH~l~e~~ 236 (340)
T PRK13536 185 RALINDPQLLILDE--------PTTGLDPHARHLI-WERLRSLLARGKTILLTTHFMEEAE 236 (340)
T ss_pred HHHhcCCCEEEEEC--------CCCCCCHHHHHHH-HHHHHHHHhCCCEEEEECCCHHHHH
Confidence 44456678999999 6667766544433 4444555555889999999988764
No 100
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=91.68 E-value=0.56 Score=48.43 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=28.3
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhH--HHHHHHHHHhc--CCeEEEecchHH
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVI--ARVTLEKFLQI--GCLTVFATHYHS 423 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~AL--A~AIlE~L~~~--~~~~lfaTHy~e 423 (577)
-...-|+|||| .|+--|..+- +...++.++.. ...+||+|||.|
T Consensus 187 v~~P~LLiLDE-----------P~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 187 VKDPELLILDE-----------PAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred hcCCCEEEecC-----------ccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 34668999999 3444444333 34445555555 568999999974
No 101
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.56 E-value=0.095 Score=52.74 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccccccccccccccCCCCCCCchhH
Q psy13263 237 HMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYD 315 (577)
Q Consensus 237 ~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~ 315 (577)
++|.......-.+.+++|+|++||++++++++..+++++.|.+ |--...+.++..-|.+-.... --..|.+.|.
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d-----~~~~~~StF~ 94 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARD-----DIMKGESTFM 94 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCccc-----ccccCcchHH
Confidence 4555554433457789999999999999999999999999986 443334444444443211111 1135578888
Q ss_pred HHHHHHHHHHHHh
Q psy13263 316 EVMDEIKSIEKEI 328 (577)
Q Consensus 316 k~valI~~imaqi 328 (577)
.-+..+..++...
T Consensus 95 ~e~~~~~~il~~~ 107 (218)
T cd03286 95 VELSETANILRHA 107 (218)
T ss_pred HHHHHHHHHHHhC
Confidence 7777776566554
No 102
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=91.42 E-value=0.42 Score=49.91 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=35.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+......-|+|+|| --.|=++.--. ..+.++..+.+.+..+|++||+.+...
T Consensus 147 a~al~~~p~lllLDE--------Pt~gLD~~~~~-~l~~~l~~~~~~g~til~~sH~~~~~~ 199 (303)
T TIGR01288 147 ARALINDPQLLILDE--------PTTGLDPHARH-LIWERLRSLLARGKTILLTTHFMEEAE 199 (303)
T ss_pred HHHHhcCCCEEEEeC--------CCcCCCHHHHH-HHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 344456778999999 55555554333 334455555555789999999988665
No 103
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.35 E-value=0.73 Score=47.58 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=37.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.........|+|+|| --.|-++.... ..+.++..+.+. ++.+|++||+.+...
T Consensus 152 aral~~~p~lllLDE--------Pt~gLD~~~~~-~l~~~l~~l~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 152 AGVLALQPDIIILDE--------ATSMLDPRGRR-EVLETVRQLKEQKGITVLSITHDLDEAA 205 (279)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHHH-HHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 344556778999999 77777766443 334455566655 789999999998765
No 104
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.11 E-value=1.1 Score=46.58 Aligned_cols=53 Identities=4% Similarity=0.009 Sum_probs=36.9
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
....+....++|+|| --.|-++.- ..-.+.++..|.+. +..+|++||+.+...
T Consensus 156 AraL~~~P~llllDE--------Pt~gLD~~~-~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~ 209 (287)
T PRK13637 156 AGVVAMEPKILILDE--------PTAGLDPKG-RDEILNKIKELHKEYNMTIILVSHSMEDVA 209 (287)
T ss_pred HHHHHcCCCEEEEEC--------CccCCCHHH-HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 344456778999999 666766643 34445556666654 788999999987654
No 105
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.05 E-value=0.59 Score=46.32 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=38.6
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH--HHHHHhh
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH--SVARRLR 429 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~--eL~~l~~ 429 (577)
+..++.......++|+|| --.|-++..-..+. .++..+.+.+..+|++||.. ++.+++.
T Consensus 152 l~laral~~~p~illlDE--------P~~gLD~~~~~~~~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 152 VSIAVQLLWDPKVLILDE--------PTSGLDSFTALNLV-STLSQLARRNRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred HHHHHHHHhCCCEEEEeC--------CCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCCCHHHHHhCC
Confidence 333344455678999999 77777765544443 34444555578999999996 5666554
No 106
>PRK10908 cell division protein FtsE; Provisional
Probab=90.99 E-value=0.34 Score=47.80 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=33.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+......-|+|+|| --.|-++..-..+. .++..+.+.+..+|++||+.+....
T Consensus 150 ral~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 150 RAVVNKPAVLLADE--------PTGNLDDALSEGIL-RLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHHHcCCCEEEEeC--------CCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 34445667999999 55555544333333 4444555557889999999876653
No 107
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=90.92 E-value=0.49 Score=49.63 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=37.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.......-|+++|| --.|-++.--.. .+.++..|.+.+..+|++||+.+....
T Consensus 151 ~aL~~~P~lllLDE--------Pt~gLD~~~~~~-l~~~l~~l~~~g~till~sH~l~e~~~ 203 (306)
T PRK13537 151 RALVNDPDVLVLDE--------PTTGLDPQARHL-MWERLRSLLARGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHhCCCCEEEEeC--------CCcCCCHHHHHH-HHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 44456778999999 667777664444 444555666568899999999886643
No 108
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.88 E-value=0.44 Score=48.43 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=32.3
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHH-hcCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~-~~~~~~lfaTHy~eL~~ 426 (577)
....++|+|| --.|-++.--..+. .++..+. +.+..+|++||..+...
T Consensus 157 ~~p~lllLDE--------Pt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~ 205 (258)
T PRK13548 157 GPPRWLLLDE--------PTSALDLAHQHHVL-RLARQLAHERGLAVIVVLHDLNLAA 205 (258)
T ss_pred CCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3568999999 66666655444333 3344455 45778999999987665
No 109
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=90.65 E-value=0.84 Score=49.07 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=32.3
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+....++|+|| --.|-+..--..+...+ ..+.+. +..+|++||+.+.+.
T Consensus 150 ~~~P~llLLDE--------P~s~LD~~~r~~l~~~L-~~l~~~~~~tvi~vTHd~~ea~ 199 (353)
T TIGR03265 150 ATSPGLLLLDE--------PLSALDARVREHLRTEI-RQLQRRLGVTTIMVTHDQEEAL 199 (353)
T ss_pred hcCCCEEEEcC--------CcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHH
Confidence 34678999999 55565555444444333 344443 889999999987654
No 110
>KOG0062|consensus
Probab=90.37 E-value=0.34 Score=54.46 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=72.0
Q ss_pred ccccccccCCCCCCCchhHHHHHH----HHHHHHHh-ccccccccceecc-----ceeeec----cc-ccc---------
Q psy13263 297 EASSAGNIIPKAGVDKEYDEVMDE----IKSIEKEI-QTYLRTQCAHFGC-----TVIYSE----AQ-KKQ--------- 352 (577)
Q Consensus 297 ~a~~~~I~gPN~gGKsvy~k~val----I~~imaqi-g~~VpA~~a~l~~-----d~if~~----iG-~~q--------- 352 (577)
..++-|+.|+|.-|||++++.++. +-.+.+++ |+|+++...-+-. |.++-. .+ ..+
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g 184 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAG 184 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh
Confidence 456778999999999999999976 11134444 6666664433322 112111 11 000
Q ss_pred hhhhhchhhhHH-----------hh--hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEec
Q psy13263 353 KKYVLEVPSKYA-----------SK--AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFAT 419 (577)
Q Consensus 353 StF~~Em~e~~~-----------il--~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaT 419 (577)
=-|..||..... .| +.-...-|.|||| =||--|=.||+| +-+||...+..+|+++
T Consensus 185 lGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE-----------PTNhLDv~av~W-Le~yL~t~~~T~liVS 252 (582)
T KOG0062|consen 185 LGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE-----------PTNHLDVVAVAW-LENYLQTWKITSLIVS 252 (582)
T ss_pred CCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC-----------CcccchhHHHHH-HHHHHhhCCceEEEEe
Confidence 124455543211 11 1112456899999 699999999998 4568888788999999
Q ss_pred chHHHH
Q psy13263 420 HYHSVA 425 (577)
Q Consensus 420 Hy~eL~ 425 (577)
|+....
T Consensus 253 HDr~FL 258 (582)
T KOG0062|consen 253 HDRNFL 258 (582)
T ss_pred ccHHHH
Confidence 986543
No 111
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=90.33 E-value=1.2 Score=47.64 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=35.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++-.+..+....++|+|| --.|-++.-...+ +.++..+.+. +..+|++||+.+...
T Consensus 136 RvalaraL~~~p~llLLDE--------Pts~LD~~~~~~l-~~~L~~l~~~~g~tii~vTHd~~~~~ 193 (352)
T PRK11144 136 RVAIGRALLTAPELLLMDE--------PLASLDLPRKREL-LPYLERLAREINIPILYVSHSLDEIL 193 (352)
T ss_pred HHHHHHHHHcCCCEEEEcC--------CcccCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHH
Confidence 3333344556678999999 5555554433333 3344455554 788999999987543
No 112
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.06 E-value=0.67 Score=48.10 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=35.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
...+....++|+|| --.|-++.. ......++..|.+. +..+|++||+.+...
T Consensus 158 raL~~~P~llllDE--------Pt~~LD~~~-~~~l~~~L~~l~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 158 GVLAMEPEVLVLDE--------PTAGLDPKG-RKEMMEMFYKLHKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHcCCCEEEEEC--------CcccCCHHH-HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34455678999999 556665543 33334455666554 789999999988654
No 113
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.06 E-value=0.13 Score=51.73 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=52.8
Q ss_pred hhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccccccccccccccCCCCCCCchhH
Q psy13263 237 HMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYD 315 (577)
Q Consensus 237 ~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~ 315 (577)
++|.......-.+..++|+|++|||+++++++..+++++.|++ |.-...+..+..-|..-. ..---..+.+.|.
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~-----l~d~~~~~lS~~~ 94 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG-----ASDSQLKGVSTFM 94 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec-----cccchhcCcChHH
Confidence 3455554444567889999999999999999999999999964 443333333333232111 1101134567787
Q ss_pred HHHHHHHHHHH
Q psy13263 316 EVMDEIKSIEK 326 (577)
Q Consensus 316 k~valI~~ima 326 (577)
+.+-.+..++.
T Consensus 95 ~e~~~~a~il~ 105 (222)
T cd03285 95 AEMLETAAILK 105 (222)
T ss_pred HHHHHHHHHHH
Confidence 77766664443
No 114
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.88 E-value=0.96 Score=51.56 Aligned_cols=48 Identities=10% Similarity=0.028 Sum_probs=31.9
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
....++|+|| --.|-++.--..+. .++..+.+.++.+|++||+.+...
T Consensus 160 ~~P~LLLLDE--------PTsgLD~~sr~~Ll-elL~el~~~G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 160 INPDILVIDE--------ALSVGDQTFTKKCL-DKMNEFKEQGKTIFFISHSLSQVK 207 (549)
T ss_pred hCCCEEEEEC--------CcccCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHH
Confidence 3668999999 55555544333333 344445555889999999987654
No 115
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=89.86 E-value=1.6 Score=43.50 Aligned_cols=49 Identities=0% Similarity=-0.111 Sum_probs=33.7
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
...++++|| --.|-++.....+ +.++..+. .+..+|++||..++.+++.
T Consensus 149 ~p~ililDE--------Pt~gLD~~~~~~l-~~~l~~~~-~~~~~iivs~~~~~~~~~d 197 (212)
T cd03274 149 PTPLYVMDE--------IDAALDFRNVSIV-ANYIKERT-KNAQFIVISLRNNMFELAD 197 (212)
T ss_pred CCCEEEEcC--------CCcCCCHHHHHHH-HHHHHHHc-CCCEEEEEECcHHHHHhCC
Confidence 347999999 7788877665433 34444443 3678899999988776554
No 116
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=89.70 E-value=0.66 Score=48.43 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=35.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH-Hhh
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR-RLR 429 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~-l~~ 429 (577)
........|+|+|| --.|-++.-- ...+.++..+.+ +..+|++||+.+... ++.
T Consensus 146 ~al~~~p~lliLDE--------Pt~gLD~~~~-~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d 200 (301)
T TIGR03522 146 QALIHDPKVLILDE--------PTTGLDPNQL-VEIRNVIKNIGK-DKTIILSTHIMQEVEAICD 200 (301)
T ss_pred HHHhcCCCEEEEcC--------CcccCCHHHH-HHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCC
Confidence 44456778999999 5555555432 334445555544 678999999987554 444
No 117
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=89.66 E-value=0.75 Score=49.80 Aligned_cols=55 Identities=11% Similarity=-0.046 Sum_probs=36.6
Q ss_pred HhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 364 ASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 364 ~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
-.+..+....++|+|| -..|-++.-...|...+.+.-...+..+||+||+.+.+.
T Consensus 140 lARAL~~~p~iLLlDE--------P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~ 194 (363)
T TIGR01186 140 LARALAAEPDILLMDE--------AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAI 194 (363)
T ss_pred HHHHHhcCCCEEEEeC--------CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3445566778999999 667777665555544444332233778999999987653
No 118
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.60 E-value=0.61 Score=46.11 Aligned_cols=63 Identities=6% Similarity=-0.012 Sum_probs=41.0
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHH-HHHhhc
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSV-ARRLRE 430 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL-~~l~~~ 430 (577)
..++-++......-+.|||| +-..-++...-+|-.-|.+|+...+.-++..||...= .+.+..
T Consensus 140 QriAliR~Lq~~P~ILLLDE--------~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k 203 (223)
T COG4619 140 QRIALIRNLQFMPKILLLDE--------ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADK 203 (223)
T ss_pred HHHHHHHHhhcCCceEEecC--------chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhhe
Confidence 34444555566677889999 5444445555566655666666778889999999754 444443
No 119
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=89.56 E-value=1.6 Score=47.95 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=35.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~ 426 (577)
.+..+....++|+|| -..|-++.-...|. .++..+.+ .+..+||+||+.+...
T Consensus 176 ArAL~~~P~iLLLDE--------Pts~LD~~~r~~l~-~~L~~l~~~~g~TIIivTHd~~~~~ 229 (400)
T PRK10070 176 ARALAINPDILLMDE--------AFSALDPLIRTEMQ-DELVKLQAKHQRTIVFISHDLDEAM 229 (400)
T ss_pred HHHHhcCCCEEEEEC--------CCccCCHHHHHHHH-HHHHHHHHHCCCeEEEEECCHHHHH
Confidence 344556778999999 66666665443333 33444444 3788999999987654
No 120
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.47 E-value=0.53 Score=48.37 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=37.4
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++.....|...+. .+.+.+..+|++||+.+...
T Consensus 149 aral~~~p~llllDE--------Pt~gLD~~~~~~l~~~l~-~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 149 AGILAMKPEIIVLDE--------PTSGLDPMGASQIMKLLY-DLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred HHHHhcCCCEEEEeC--------CCcCCCHHHHHHHHHHHH-HHHHCCCEEEEEecCHHHHH
Confidence 344456778999999 777777766555554444 44444788999999988655
No 121
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=89.24 E-value=1.2 Score=50.14 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=41.5
Q ss_pred hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhh
Q psy13263 357 LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 357 ~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~ 429 (577)
.|-++++-.+.......++|+|| .|+.-|...-. .+.+.|.+. ++.+|++||...+...+.
T Consensus 473 GqrQRiaLARall~~~~illLDE-----------pts~LD~~~~~-~i~~~L~~~~~~~tiIiitH~~~~~~~~D 535 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDE-----------ATSALDNESER-LVQAALERLMQGRTTLVIAHRLSTIEKAD 535 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeC-----------ccccCCHHHHH-HHHHHHHHHhCCCEEEEEehhhHHHHhCC
Confidence 44455544445566779999999 67777764333 455556554 689999999997766544
No 122
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=89.17 E-value=0.66 Score=49.72 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=34.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+..+....++|+|| --.|=++.--..+ +.++..+.+. +..+|++||+.+...
T Consensus 143 AraL~~~p~lllLDE--------Pts~LD~~~~~~l-~~~L~~l~~~~g~tiiivtH~~~~~~ 196 (354)
T TIGR02142 143 GRALLSSPRLLLMDE--------PLAALDDPRKYEI-LPYLERLHAEFGIPILYVSHSLQEVL 196 (354)
T ss_pred HHHHHcCCCEEEEcC--------CCcCCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 344455668999999 5555555433333 3444555554 788999999987654
No 123
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=89.15 E-value=1.2 Score=50.43 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~ 429 (577)
....++|+|| .|+.-|-.+-. .+.+.|.+. ++.+|++||..++.+.+.
T Consensus 497 ~~~~ililDE-----------ptsaLD~~t~~-~i~~~l~~~~~~~tvI~VtHr~~~~~~~D 546 (582)
T PRK11176 497 RDSPILILDE-----------ATSALDTESER-AIQAALDELQKNRTSLVIAHRLSTIEKAD 546 (582)
T ss_pred hCCCEEEEEC-----------ccccCCHHHHH-HHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 3668899999 78888875544 366666554 689999999997766544
No 124
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.90 E-value=1.1 Score=40.41 Aligned_cols=21 Identities=5% Similarity=-0.220 Sum_probs=17.2
Q ss_pred cccCCCCCCCchhHHHHHHHH
Q psy13263 302 GNIIPKAGVDKEYDEVMDEIK 322 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~valI~ 322 (577)
+|+||+..|||.+...++.-.
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHH
Confidence 578999999999998886543
No 125
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.74 E-value=0.23 Score=50.10 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=60.5
Q ss_pred hhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccccccccccccccCCCCCCCchhHH
Q psy13263 238 MDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDE 316 (577)
Q Consensus 238 ~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~k 316 (577)
+|.......-.+..++|+|+.|||+++++++..+++++.|.+ |--...+.+++.-|.+-.+.. --..|.+.|..
T Consensus 22 n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d-----~~~~~~StF~~ 96 (222)
T cd03287 22 NDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASD-----SIQHGMSTFMV 96 (222)
T ss_pred EeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCcc-----ccccccchHHH
Confidence 344433333346678999999999999999999999999986 333333445544443211111 11346788888
Q ss_pred HHHHHHHHHHHhccccccccceecc-ceeee
Q psy13263 317 VMDEIKSIEKEIQTYLRTQCAHFGC-TVIYS 346 (577)
Q Consensus 317 ~valI~~imaqig~~VpA~~a~l~~-d~if~ 346 (577)
-+..+..++.+.. ...|-+ |.++.
T Consensus 97 e~~~~~~il~~~~------~~sLvllDE~~~ 121 (222)
T cd03287 97 ELSETSHILSNCT------SRSLVILDELGR 121 (222)
T ss_pred HHHHHHHHHHhCC------CCeEEEEccCCC
Confidence 8877776655533 334444 66543
No 126
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=88.65 E-value=1.5 Score=51.04 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
....++|+|| .|+.-|-. -...|.+.|.+.++.+|++||-.++...+.
T Consensus 632 ~~p~iliLDE-----------ptS~LD~~-te~~i~~~l~~~~~T~IiitHrl~~i~~~D 679 (710)
T TIGR03796 632 RNPSILILDE-----------ATSALDPE-TEKIIDDNLRRRGCTCIIVAHRLSTIRDCD 679 (710)
T ss_pred hCCCEEEEEC-----------ccccCCHH-HHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 3668899999 67777763 355677777777899999999998776544
No 127
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.81 E-value=0.82 Score=44.65 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=34.6
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+..+...-++|+|| --.|-++..-. ....+++.+.+ +..+|++||..++..
T Consensus 139 v~la~al~~~p~llllDE--------Pt~~LD~~~~~-~l~~~l~~~~~-~~tii~vsH~~~~~~ 193 (211)
T cd03264 139 VGIAQALVGDPSILIVDE--------PTAGLDPEERI-RFRNLLSELGE-DRIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHHHhcCCCEEEEcC--------CcccCCHHHHH-HHHHHHHHHhC-CCEEEEEcCCHHHHH
Confidence 333445566778999999 55555543332 22344455544 578899999988764
No 128
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.57 E-value=1.8 Score=42.45 Aligned_cols=61 Identities=8% Similarity=0.039 Sum_probs=33.4
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEec-chH-HHHHHhh
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFAT-HYH-SVARRLR 429 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaT-Hy~-eL~~l~~ 429 (577)
.++.-.+.......++|+|| --.|-++.-.. ..+.+++.+.+. +..+|++| |.. ++.++..
T Consensus 125 qrl~laral~~~p~llllDE--------Pt~~LD~~~~~-~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d 188 (202)
T cd03233 125 KRVSIAEALVSRASVLCWDN--------STRGLDSSTAL-EILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188 (202)
T ss_pred HHHHHHHHHhhCCCEEEEcC--------CCccCCHHHHH-HHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCC
Confidence 33333344455667999999 66666654443 334455555554 55555554 543 4445443
No 129
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=87.28 E-value=2.5 Score=47.59 Aligned_cols=29 Identities=3% Similarity=-0.184 Sum_probs=23.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45555556678999999999999998864
No 130
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=87.25 E-value=0.36 Score=48.20 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=49.8
Q ss_pred hhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccccccccccccccccCCCCCCCchhH
Q psy13263 237 HMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYD 315 (577)
Q Consensus 237 ~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~ 315 (577)
++|....... .+..++|+|.+||||+++.++..+++.+.|.+ |--...+.++..-|.+- ....--.+|.+.|.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~-----~~~~~ls~g~s~f~ 94 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRI-----GASDDLAGGRSTFM 94 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccC-----CchhhhccCcchHH
Confidence 4555544433 67789999999999999999988888888876 33333344443333211 01111134556665
Q ss_pred HHHHHHHHHHH
Q psy13263 316 EVMDEIKSIEK 326 (577)
Q Consensus 316 k~valI~~ima 326 (577)
.-+..|..+++
T Consensus 95 ~e~~~l~~~l~ 105 (216)
T cd03284 95 VEMVETANILN 105 (216)
T ss_pred HHHHHHHHHHH
Confidence 54444443443
No 131
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.10 E-value=1.6 Score=45.11 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=24.8
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|...+.-..||+|+|.+|||+.+++++-
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 67777777889999999999999998754
No 132
>PRK09183 transposase/IS protein; Provisional
Probab=86.93 E-value=1.8 Score=44.54 Aligned_cols=95 Identities=7% Similarity=0.026 Sum_probs=57.1
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhh------hHHhhhc-CCCc
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPS------KYASKAK-SNHQ 372 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e------~~~il~~-a~~~ 372 (577)
..+++||+..|||.....++... . +-|.- ..|+.... +..++.. ...++.. ....
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a-~--~~G~~-----------v~~~~~~~----l~~~l~~a~~~~~~~~~~~~~~~~~ 165 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEA-V--RAGIK-----------VRFTTAAD----LLLQLSTAQRQGRYKTTLQRGVMAP 165 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHH-H--HcCCe-----------EEEEeHHH----HHHHHHHHHHCCcHHHHHHHHhcCC
Confidence 45688999999999998886543 1 22211 12222111 1111111 1111211 2344
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
.|++||| +|-..-..++..+..-++....++++ +||||++
T Consensus 166 dlLiiDd--------lg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDE--------IGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcc--------cccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 6999999 99877777777778888887776654 7888887
No 133
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=86.84 E-value=1.8 Score=45.06 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=32.5
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
+...-++|+|| .|+. ....++++.+. .+..+|++||...+.++..
T Consensus 192 ~~~P~villDE--------~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~ 236 (270)
T TIGR02858 192 SMSPDVIVVDE--------IGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDLYK 236 (270)
T ss_pred hCCCCEEEEeC--------CCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHHHh
Confidence 34668999999 7642 34566776664 5889999999987766543
No 134
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=86.62 E-value=1.1 Score=50.96 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=35.0
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..-|.|||| =||--|--+|+| +-+||.+....+||+||+....+
T Consensus 171 ~pDlLLLDE-----------PTNHLD~~~i~W-Le~~L~~~~gtviiVSHDR~FLd 214 (530)
T COG0488 171 EPDLLLLDE-----------PTNHLDLESIEW-LEDYLKRYPGTVIVVSHDRYFLD 214 (530)
T ss_pred CCCEEEEcC-----------CCcccCHHHHHH-HHHHHHhCCCcEEEEeCCHHHHH
Confidence 556899999 699999999988 34556565558999999987766
No 135
>PLN03073 ABC transporter F family; Provisional
Probab=86.46 E-value=2.6 Score=49.69 Aligned_cols=47 Identities=4% Similarity=0.024 Sum_probs=31.8
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
....-++|+|| =|+..|-.+. ..+++.|.+.+..+|++||+.++...
T Consensus 643 ~~~p~lLLLDE-----------PT~~LD~~s~-~~l~~~L~~~~gtvIivSHd~~~i~~ 689 (718)
T PLN03073 643 FKKPHILLLDE-----------PSNHLDLDAV-EALIQGLVLFQGGVLMVSHDEHLISG 689 (718)
T ss_pred hcCCCEEEEcC-----------CCCCCCHHHH-HHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 34678999999 3555554443 34666666544589999999887664
No 136
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=86.23 E-value=3.5 Score=46.65 Aligned_cols=62 Identities=10% Similarity=0.008 Sum_probs=40.1
Q ss_pred hhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcc--hhhHHHHHHHHHHhcCCeEEEecch-HHHHHHhhc
Q psy13263 356 VLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTND--GCVIARVTLEKFLQIGCLTVFATHY-HSVARRLRE 430 (577)
Q Consensus 356 ~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~D--G~ALA~AIlE~L~~~~~~~lfaTHy-~eL~~l~~~ 430 (577)
+..|-+++..+.. .--|+++|| =|+.-. =......+++.|..+|.-+||.||. +|+.+++..
T Consensus 150 qrQ~VeIArAl~~--~arllIlDE-----------PTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dr 214 (500)
T COG1129 150 QRQMVEIARALSF--DARVLILDE-----------PTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADR 214 (500)
T ss_pred HHHHHHHHHHHhc--CCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCE
Confidence 4556666655443 223999999 233322 2344556778888889999999998 566666543
No 137
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=86.22 E-value=1.4 Score=50.27 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=34.5
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
..-|.|||| =||--|=.++- |+.+.|.+-.-.+||+||+..+.+-.
T Consensus 457 ~pNvLiLDE-----------PTNhLDi~s~~-aLe~aL~~f~Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 457 PPNLLLLDE-----------PTNHLDIESLE-ALEEALLDFEGTVLLVSHDRYFLDRV 502 (530)
T ss_pred CCCEEEEcC-----------CCccCCHHHHH-HHHHHHHhCCCeEEEEeCCHHHHHhh
Confidence 556888999 58888865543 55566666678899999999888743
No 138
>KOG0059|consensus
Probab=85.68 E-value=2.6 Score=50.77 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=53.4
Q ss_pred hhhhhchhhh-HHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh-hc
Q psy13263 353 KKYVLEVPSK-YASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL-RE 430 (577)
Q Consensus 353 StF~~Em~e~-~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~-~~ 430 (577)
.+|..-+++. ...+......++|+||| ---|-+| .+-=..|.++..+.+.+--+|+|||+.|-++.+ .+
T Consensus 697 ~~ySgG~kRkLs~aialig~p~vi~LDE--------PstGmDP-~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 697 RTYSGGNKRRLSFAIALIGDPSVILLDE--------PSTGLDP-KARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTR 767 (885)
T ss_pred hhCCCcchhhHHHHHHHhcCCCEEEecC--------CCCCCCH-HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhh
Confidence 3455444542 22334455679999999 7888888 555678888888888743999999999998854 33
Q ss_pred CCCccccccee
Q psy13263 431 EPNVAFEYMSY 441 (577)
Q Consensus 431 ~~~V~n~hm~~ 441 (577)
..-..+.++.+
T Consensus 768 ~aImv~G~l~c 778 (885)
T KOG0059|consen 768 TAIMVIGQLRC 778 (885)
T ss_pred hheeecCeeEE
Confidence 33333444444
No 139
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=85.64 E-value=2 Score=49.72 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=23.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 360 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45555566778999999999999998864
No 140
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=85.62 E-value=2.1 Score=48.73 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=39.2
Q ss_pred hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhh
Q psy13263 357 LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 357 ~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~ 429 (577)
.|.+++.-.+.......++|+|| --.+-++.-.. .+.+.|.+. ++.+|++||..++.+.+.
T Consensus 475 Gq~QRialARall~~~~iliLDE--------pts~LD~~t~~----~i~~~l~~~~~~~tvIiitHr~~~~~~~D 537 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDE--------ATSALDVETEA----KVKAALDELMKGRTTFIIAHRLSTVRNAD 537 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeC--------CccCCCHHHHH----HHHHHHHHHhcCCEEEEEEecHHHHHhCC
Confidence 45566655555667888999999 44444443333 344444433 689999999998766543
No 141
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=85.57 E-value=2.7 Score=47.40 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=40.3
Q ss_pred hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhh
Q psy13263 357 LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 357 ~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~ 429 (577)
.|..++.-.+.......++|+|| .|+..|-.. ...+.+.|.+. ++.+|++||..++.....
T Consensus 480 Gq~Qrl~laRal~~~~~ililDE-----------pts~lD~~~-~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d 542 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDE-----------ATSALDAES-EQLVQQALETLMKGRTTLIIAHRLATVLKAD 542 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeC-----------cccccCHHH-HHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 35555544444455678999999 566666553 34455666553 689999999997765443
No 142
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=85.17 E-value=1.9 Score=54.70 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=40.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+.......++|+|| .-.|-++.-+..|...++..+.+ +..+|++||..+....
T Consensus 560 ARAl~~~~~illLDe--------p~saLD~~~~~~i~~~~l~~~~~-~~tvilvtH~~~~~~~ 613 (1490)
T TIGR01271 560 ARAVYKDADLYLLDS--------PFTHLDVVTEKEIFESCLCKLMS-NKTRILVTSKLEHLKK 613 (1490)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCChHHHHh
Confidence 334445668999999 88888888777777665555543 7889999999887664
No 143
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.09 E-value=2.9 Score=42.71 Aligned_cols=60 Identities=12% Similarity=-0.027 Sum_probs=38.0
Q ss_pred chhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchh--hHHHHHHHHHHhc-CCeEEEecchHHHHHHh
Q psy13263 358 EVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGC--VIARVTLEKFLQI-GCLTVFATHYHSVARRL 428 (577)
Q Consensus 358 Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~--ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~ 428 (577)
|.++.+..-..+-..-++|+|| =|+--|.. .-...++..|... +-.+|++||+++.....
T Consensus 143 qkqRvaIA~vLa~~P~iliLDE-----------Pta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ 205 (235)
T COG1122 143 QKQRVAIAGVLAMGPEILLLDE-----------PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEY 205 (235)
T ss_pred ceeeHHhhHHHHcCCCEEEEcC-----------CCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhh
Confidence 4444333223345567899999 34444443 3445556777766 67899999999877653
No 144
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=84.84 E-value=4 Score=45.81 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=34.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|=++.--.. .+.++..+.+.+..+|++||+.+...
T Consensus 153 ~aL~~~p~lllLDE--------Pt~~LD~~~~~~-l~~~l~~~~~~g~tiiivtHd~~~~~ 204 (510)
T PRK15439 153 RGLMRDSRILILDE--------PTASLTPAETER-LFSRIRELLAQGVGIVFISHKLPEIR 204 (510)
T ss_pred HHHHcCCCEEEEEC--------CCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 34456678999999 555555443333 33445556555789999999987654
No 145
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=84.59 E-value=3.4 Score=46.96 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=40.9
Q ss_pred hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHh
Q psy13263 357 LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRL 428 (577)
Q Consensus 357 ~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~ 428 (577)
.|.+++.-.+.......++|+|| .|+.-|-.. ...|.+.|.+. ++.+|++||..++...+
T Consensus 480 GqrQRialARaLl~~~~illlDE-----------pts~LD~~t-~~~i~~~l~~~~~~~tvIivtHr~~~l~~~ 541 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDE-----------ATANIDSGT-EQAIQQALAAVREHTTLVVIAHRLSTIVEA 541 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeC-----------CcccCCHHH-HHHHHHHHHHHhCCCEEEEEecchHHHHhC
Confidence 35555544444556678999999 677777543 45666666654 68999999998765543
No 146
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=84.31 E-value=0.83 Score=45.05 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=31.1
Q ss_pred hhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc
Q psy13263 238 MDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279 (577)
Q Consensus 238 ~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh 279 (577)
+|..+... .+..++|+|++||||++|+++..+++.+.|++
T Consensus 18 n~i~l~~g--~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~ 57 (199)
T cd03283 18 NDIDMEKK--NGILITGSNMSGKSTFLRTIGVNVILAQAGAP 57 (199)
T ss_pred ceEEEcCC--cEEEEECCCCCChHHHHHHHHHHHHHHHcCCE
Confidence 44444432 57788999999999999999987777777864
No 147
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.31 E-value=2.4 Score=44.36 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=33.3
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+-.+++.+-..-++|+|| -..--+|.-...|=--+ ..|.+. +..++|.||+.+-+-
T Consensus 144 VGv~RALAadP~ilLMDE--------PFgALDpI~R~~lQ~e~-~~lq~~l~kTivfVTHDidEA~ 200 (309)
T COG1125 144 VGVARALAADPPILLMDE--------PFGALDPITRKQLQEEI-KELQKELGKTIVFVTHDIDEAL 200 (309)
T ss_pred HHHHHHHhcCCCeEeecC--------CccccChhhHHHHHHHH-HHHHHHhCCEEEEEecCHHHHH
Confidence 333455566677999999 33344444443332222 234444 889999999976543
No 148
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=84.27 E-value=3.7 Score=47.42 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=32.3
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| =|+..|-.+. ..+.+.|.+.+..+|++||+.++..
T Consensus 453 ~al~~~p~lLlLDE-----------Pt~~LD~~~~-~~l~~~l~~~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 453 RLFLKPSNLLILDE-----------PTNDLDVETL-ELLEELLDSYQGTVLLVSHDRQFVD 501 (635)
T ss_pred HHHhcCCCEEEEcC-----------CCCCCCHHHH-HHHHHHHHhCCCeEEEEECCHHHHH
Confidence 33445668999999 4555555442 3445555444668999999987665
No 149
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=84.20 E-value=0.31 Score=57.43 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=48.9
Q ss_pred hhhhhhccccCccCCcchhhhhhhhhhccCcccccCcccccccccccccccccccccccCCCCCC--CchhHHHHHHHHH
Q psy13263 246 ELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGV--DKEYDEVMDEIKS 323 (577)
Q Consensus 246 eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~~~~n~F~~~~a~~~~I~gPN~gG--Ksvy~k~valI~~ 323 (577)
.++...++|+|++||++.|++++..+++.+.|.+ +|...| -.+|.++++.|+
T Consensus 316 e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~-------------------------i~a~~gsei~~F~~i~aDIG- 369 (753)
T COG1193 316 ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLP-------------------------IPALEGSELPVFVKIFADIG- 369 (753)
T ss_pred ccceeeEecCCCCcceehHHHHHHHHHHHHcCCC-------------------------eeccCCCcchhHHHhhhccC-
Confidence 3566778999999999999999999999998865 222222 356777777776
Q ss_pred HHHHhccccccccceec
Q psy13263 324 IEKEIQTYLRTQCAHFG 340 (577)
Q Consensus 324 imaqig~~VpA~~a~l~ 340 (577)
.++.|+.-+....+++.
T Consensus 370 DeQsIeqsLSTFSshm~ 386 (753)
T COG1193 370 DEQSIEQSLSTFSSHMT 386 (753)
T ss_pred cHHHHHHHHhhhHHHHH
Confidence 45666655555555544
No 150
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=83.81 E-value=4.7 Score=44.77 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=33.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.......-++|+|| --.|=++... ...+.++..+.+.+..+|++||+.+...
T Consensus 148 ~al~~~p~lllLDE--------Pt~~LD~~~~-~~l~~~l~~~~~~g~tvii~tH~~~~~~ 199 (490)
T PRK10938 148 QALMSEPDLLILDE--------PFDGLDVASR-QQLAELLASLHQSGITLVLVLNRFDEIP 199 (490)
T ss_pred HHHHcCCCEEEEcC--------CcccCCHHHH-HHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 34455668999999 4444444332 3333445555555788999999987653
No 151
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=83.77 E-value=3 Score=47.21 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=33.0
Q ss_pred CceEEeecccCcccccccccCCCCcchh-hHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGC-VIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~-ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
..-||+||| || ..=+ .+|- ||+.|| ..+-.+++.++++||-..+.....
T Consensus 490 ~P~lvVLDE--PN------sNLD-~~GE~AL~~Ai-~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 490 DPFLVVLDE--PN------SNLD-SEGEAALAAAI-LAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred CCcEEEecC--CC------CCcc-hhHHHHHHHHH-HHHHHcCCEEEEEecCHHHHhhcc
Confidence 567999999 43 1111 2343 455444 466677999999999998877554
No 152
>KOG0221|consensus
Probab=83.71 E-value=0.34 Score=55.24 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=37.1
Q ss_pred hhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc
Q psy13263 237 HMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279 (577)
Q Consensus 237 ~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh 279 (577)
+++..++...-.+.+++|+|..|||++++++++.+++++.|+|
T Consensus 589 PNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsF 631 (849)
T KOG0221|consen 589 PNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSF 631 (849)
T ss_pred CCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccc
Confidence 4566666556678999999999999999999999999999987
No 153
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=83.51 E-value=2.4 Score=42.25 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=30.5
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-C-CeEEEecchH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-G-CLTVFATHYH 422 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~-~~~lfaTHy~ 422 (577)
...-++|+|| .-.|.++.....+...+.+ +.+. + +.+|++||+.
T Consensus 147 ~~p~llllDE--------P~~~LD~~~~~~i~~~l~~-~~~~~g~~~viiith~~ 192 (213)
T cd03277 147 TRCPFRVVDE--------INQGMDPTNERKVFDMLVE-TACKEGTSQYFLITPKL 192 (213)
T ss_pred cCCCEEEEec--------ccccCCHHHHHHHHHHHHH-HhhcCCCceEEEEchhh
Confidence 4557899999 8888888776665544444 4444 4 4578888875
No 154
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.23 E-value=0.28 Score=48.73 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=39.5
Q ss_pred hhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc-cCcccccccccc
Q psy13263 238 MDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFEN 291 (577)
Q Consensus 238 ~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe~~l~~~~n 291 (577)
+|.......-.+.+++|+|++|||++++.++..+++.+.|++ |.....+..+.+
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~ 74 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNR 74 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhh
Confidence 344443333356788999999999999999999999999987 655555544433
No 155
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.01 E-value=2.2 Score=37.07 Aligned_cols=22 Identities=5% Similarity=-0.129 Sum_probs=17.5
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+|+||...|||...+.+..-
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999988877653
No 156
>PRK08181 transposase; Validated
Probab=82.91 E-value=3 Score=43.43 Aligned_cols=97 Identities=7% Similarity=-0.030 Sum_probs=60.0
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhh------HHhhhcCCCc
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSK------YASKAKSNHQ 372 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~------~~il~~a~~~ 372 (577)
...+++||...|||.....++.-. .. -|. ..+|+.+.. +..++... ...+..-..-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~-~g~-----------~v~f~~~~~----L~~~l~~a~~~~~~~~~l~~l~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IE-NGW-----------RVLFTRTTD----LVQKLQVARRELQLESAIAKLDKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HH-cCC-----------ceeeeeHHH----HHHHHHHHHhCCcHHHHHHHHhcC
Confidence 345678999999999998887533 11 131 123433222 22222111 1112222234
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
.|++||| ||.-.....+..+...|+.+...+ ..+||||.+.
T Consensus 169 dLLIIDD--------lg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDD--------LAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred CEEEEec--------cccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 6999999 998888777777888888877765 5788999883
No 157
>PRK08116 hypothetical protein; Validated
Probab=82.83 E-value=3.8 Score=42.45 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=58.6
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhh---------HHhhhcCCC
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSK---------YASKAKSNH 371 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~---------~~il~~a~~ 371 (577)
.++.||...|||.....++.- ++.+ |.. .+|+.... |..++... ..++.....
T Consensus 117 l~l~G~~GtGKThLa~aia~~--l~~~-~~~-----------v~~~~~~~----ll~~i~~~~~~~~~~~~~~~~~~l~~ 178 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANE--LIEK-GVP-----------VIFVNFPQ----LLNRIKSTYKSSGKEDENEIIRSLVN 178 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHc-CCe-----------EEEEEHHH----HHHHHHHHHhccccccHHHHHHHhcC
Confidence 457799999999998876542 2222 311 23333222 22222211 011222223
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
-.|++||+ ||.--.+.-.......|+......+..+||||.+.
T Consensus 179 ~dlLviDD--------lg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 ADLLILDD--------LGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCEEEEec--------ccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 35899999 98766666677777888888877778899999874
No 158
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=82.32 E-value=5.6 Score=46.23 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=41.5
Q ss_pred hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 357 LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 357 ~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
.|-++++-.+.......++++|| .|+.-|...- ..|.+.|.+.++.+|++||..+....+.
T Consensus 592 GQrQRialARAll~~p~iLiLDE-----------pTS~LD~~te-~~i~~~L~~~~~T~IiItHr~~~i~~~D 652 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDE-----------ATSALDNRTQ-AIVSESLERLKVTRIVIAHRLSTIRNAD 652 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCHHHH-HHHHHHHHHhCCeEEEEecChHHHHcCC
Confidence 34444444444556778999999 6777776443 3566777666789999999987765443
No 159
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.30 E-value=1.5 Score=44.74 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=86.0
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccCcccccCcccccccc-ccc----cccccccc-cccc--CCCCCCCchhHHHHH
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYF-ENA----FDHKEASS-AGNI--IPKAGVDKEYDEVMD 319 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~~~-~n~----F~~~~a~~-~~I~--gPN~gGKsvy~k~va 319 (577)
.++-+=|+...|||||||.+....-++.+.|+ +..+.+. .|- ++..+-|+ .|.. -||.--+|+|+.+.-
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~---~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVay 110 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARV---EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAY 110 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceE---EEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHH
Confidence 34445588889999999988764444433332 1111111 122 22223333 2322 388777888887653
Q ss_pred HHH--HHH-HHhccccccccceecc-ceeeecccccchhhh---hchhhhHHhhhcCCCceEEeecccCcccccccccCC
Q psy13263 320 EIK--SIE-KEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYV---LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGT 392 (577)
Q Consensus 320 lI~--~im-aqig~~VpA~~a~l~~-d~if~~iG~~qStF~---~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGT 392 (577)
-+. .+. +.+...|-..-..-.+ |.+--+..+ |.+. ..-.++-..+..|-...++|+|| =|
T Consensus 111 G~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~--sa~~LSGGQQQRLcIARalAv~PeVlLmDE-----------Pt 177 (253)
T COG1117 111 GLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHK--SALGLSGGQQQRLCIARALAVKPEVLLMDE-----------PT 177 (253)
T ss_pred hHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhC--CccCCChhHHHHHHHHHHHhcCCcEEEecC-----------cc
Confidence 221 000 1111111000000111 111111111 2221 11122222344566778899999 46
Q ss_pred CCcchhhHHHHHHHHHHhc---CCeEEEecchHHHHHHhhcCCCcccccceee
Q psy13263 393 GTNDGCVIARVTLEKFLQI---GCLTVFATHYHSVARRLREEPNVAFEYMSYI 442 (577)
Q Consensus 393 st~DG~ALA~AIlE~L~~~---~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~ 442 (577)
|..| -|+.+-+|.|+.. +-.++++||.+.=+.-... ...++++...
T Consensus 178 SALD--PIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD--~taFf~~G~L 226 (253)
T COG1117 178 SALD--PISTLKIEELITELKKKYTIVIVTHNMQQAARVSD--YTAFFYLGEL 226 (253)
T ss_pred cccC--chhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhH--hhhhhcccEE
Confidence 6666 3566778888765 6788999999865553332 3445666544
No 160
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=81.68 E-value=4.3 Score=41.40 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=57.1
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecccccchhhhhchh-hhHHhhhcCCCceEEeec
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVP-SKYASKAKSNHQRVATKK 378 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG~~qStF~~Em~-e~~~il~~a~~~sLVLlD 378 (577)
.+++||...|||..-+.++..- ..++.........+.+ +.+ +.|..+.. .+..++..+ ..++++||
T Consensus 45 vll~GppGtGKTtlA~~ia~~l---~~~~~~~~~~~v~~~~~~l~--------~~~~g~~~~~~~~~~~~a-~~~VL~ID 112 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLF---KEMNVLSKGHLIEVERADLV--------GEYIGHTAQKTREVIKKA-LGGVLFID 112 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH---HhcCcccCCceEEecHHHhh--------hhhccchHHHHHHHHHhc-cCCEEEEe
Confidence 4578999999999999998753 3333211111111111 111 11221211 122233333 24789999
Q ss_pred ccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhcCCCc
Q psy13263 379 KNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLREEPNV 434 (577)
Q Consensus 379 Etg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~~~~V 434 (577)
| ++-|.+|....-|......++..+-.. .+.+++++...++..+....|.+
T Consensus 113 E-----~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 113 E-----AYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred c-----hhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHH
Confidence 9 222445544333433344455555443 33556677666665544433433
No 161
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.32 E-value=3.1 Score=42.28 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=40.3
Q ss_pred hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHH
Q psy13263 359 VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARR 427 (577)
Q Consensus 359 m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l 427 (577)
..+++..+..+....++|+|| --.|-++.....+... +..+.+ .+..+|++||..++...
T Consensus 121 ~qrv~iaraL~~~p~llllDE--------Pt~~LD~~~~~~l~~~-l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 121 LQRVAIAACLSKDADIYLLDE--------PSAYLDVEQRLMASKV-IRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHH
Confidence 334444445566778999999 6666666655555444 444444 47899999999887764
No 162
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=81.20 E-value=5.1 Score=46.69 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=33.6
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhh
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~ 429 (577)
...++|+|| .|+.-|... ...|.+.|.+. ++.+|++||..++...+.
T Consensus 629 ~p~iliLDE-----------~Ts~LD~~t-e~~i~~~L~~~~~~T~IiitHr~~~~~~~D 676 (708)
T TIGR01193 629 DSKVLILDE-----------STSNLDTIT-EKKIVNNLLNLQDKTIIFVAHRLSVAKQSD 676 (708)
T ss_pred CCCEEEEeC-----------ccccCCHHH-HHHHHHHHHHhcCCEEEEEecchHHHHcCC
Confidence 568899999 677777643 44555666553 688999999998766543
No 163
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=81.13 E-value=5.1 Score=46.64 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRL 428 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~ 428 (577)
....++|+|| .|+.-|... ...+.+.|.+. ++.+|++||..+....+
T Consensus 610 ~~~~ililDE-----------pts~LD~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 658 (694)
T TIGR01846 610 GNPRILIFDE-----------ATSALDYES-EALIMRNMREICRGRTVIIIAHRLSTVRAC 658 (694)
T ss_pred hCCCEEEEEC-----------CCcCCCHHH-HHHHHHHHHHHhCCCEEEEEeCChHHHHhC
Confidence 3667889999 566666543 33444555443 78999999998776543
No 164
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.90 E-value=3.5 Score=39.96 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=37.8
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
++.-.+.......++|+|| --.|-++..-. ..+.++..+.+.+..+|++||+.++..+
T Consensus 142 r~~laral~~~p~llllDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~tii~~sh~~~~~~~ 199 (206)
T TIGR03608 142 RVALARAILKDPPLILADE--------PTGSLDPKNRD-EVLDLLLELNDEGKTIIIVTHDPEVAKQ 199 (206)
T ss_pred HHHHHHHHHcCCCEEEEeC--------CcCCCCHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 3333344556778999999 66666654433 3334445555557889999999987654
No 165
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=80.87 E-value=2.5 Score=46.98 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred hhhhhhhccccCccCCcchhhhhhhhhhcc-CcccccCcccccccccccccccccccccccCCCCCCCchhHHHHHHHHH
Q psy13263 245 DELACSYMKESGCTGESTLLTQLCNYESQT-PSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKS 323 (577)
Q Consensus 245 ~eLdl~~mkGsn~~GKStlLk~i~~~~i~i-~~GrhPlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~ 323 (577)
..-++.++.|....||+|+++.+....... ..+.-|.-.. +....|+. .+..-+..-|.-++.++.........+
T Consensus 407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~-v~vp~nt~---~a~iPge~Ep~f~~~tilehl~s~tGD 482 (593)
T COG2401 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK-VEVPKNTV---SALIPGEYEPEFGEVTILEHLRSKTGD 482 (593)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCc-eeccccch---hhccCcccccccCchhHHHHHhhccCc
Confidence 334566778888899999999876533211 1111232111 11111111 111122333665555544443332222
Q ss_pred HHHHhccccccccceecc-ceeeeccc-ccchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHH
Q psy13263 324 IEKEIQTYLRTQCAHFGC-TVIYSEAQ-KKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIA 401 (577)
Q Consensus 324 imaqig~~VpA~~a~l~~-d~if~~iG-~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA 401 (577)
+-+.++. -.+.|+ |.++.+-- ...|+=+.|=..++.. .+....|.++|| |+.--++.-..-+|
T Consensus 483 ~~~AveI-----LnraGlsDAvlyRr~f~ELStGQKeR~KLAkl--laerpn~~~iDE--------F~AhLD~~TA~rVA 547 (593)
T COG2401 483 LNAAVEI-----LNRAGLSDAVLYRRKFSELSTGQKERAKLAKL--LAERPNVLLIDE--------FAAHLDELTAVRVA 547 (593)
T ss_pred hhHHHHH-----HHhhccchhhhhhccHhhcCcchHHHHHHHHH--HhcCCCcEEhhh--------hhhhcCHHHHHHHH
Confidence 1111110 012233 33332211 1113333333333332 245557889999 88777776666666
Q ss_pred HHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 402 RVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 402 ~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
..|-+---+.+...+++||..++.+-+.
T Consensus 548 rkiselaRe~giTlivvThrpEv~~AL~ 575 (593)
T COG2401 548 RKISELAREAGITLIVVTHRPEVGNALR 575 (593)
T ss_pred HHHHHHHHHhCCeEEEEecCHHHHhccC
Confidence 6555433334899999999999998664
No 166
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=80.59 E-value=6 Score=46.02 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=31.7
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhh
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~ 429 (577)
.....++|+|| .|+.-|-. -...|.+.|.+. ++.+|++||..+....+.
T Consensus 617 l~~p~iliLDE-----------~Ts~LD~~-te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D 667 (694)
T TIGR03375 617 LRDPPILLLDE-----------PTSAMDNR-SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667 (694)
T ss_pred hcCCCEEEEeC-----------CCCCCCHH-HHHHHHHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence 34668899999 56666542 223344444443 689999999998765443
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.26 E-value=3.6 Score=40.10 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=35.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++..-..+...+ ..+.+ .++.+|++||+.+...
T Consensus 140 a~al~~~p~llllDE--------P~~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 140 ARVLVRDKPVLLLDE--------PFAALDPALRAEMLDLV-LDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHhcCCCEEEEcC--------CcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHH
Confidence 344456778999999 66666655544443333 34444 3789999999988664
No 168
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=79.84 E-value=3.8 Score=40.35 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=37.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHHh
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRL 428 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l~ 428 (577)
+..+....++|+|| --.|-+..-.. ....+++.+.+ .+..+|++||+.++.++.
T Consensus 154 ral~~~p~illlDE--------P~~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sh~~~~~~~~ 208 (220)
T TIGR02982 154 RALVHRPKLVLADE--------PTAALDSKSGR-DVVELMQKLAREQGCTILIVTHDNRILDVA 208 (220)
T ss_pred HHHhcCCCEEEEeC--------CCCcCCHHHHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHhhC
Confidence 34456678999999 77777775443 33445555555 488999999999866543
No 169
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.82 E-value=11 Score=43.24 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=44.5
Q ss_pred hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhc
Q psy13263 353 KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 353 StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~ 430 (577)
|+||.-++-+.. ......-+++|| += +.=|-..|.+|.+.|.+. ++-||++||...++.....
T Consensus 438 SRimLAlk~i~~---~~~~~ptlIFDE--------VD----~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~ 502 (557)
T COG0497 438 SRIMLALKVILS---RKDDTPTLIFDE--------VD----TGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADT 502 (557)
T ss_pred HHHHHHHHHHHh---ccCCCCeEEEec--------cc----CCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcc
Confidence 777766554332 222233677899 54 444567888888888876 7899999999999988764
No 170
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=79.55 E-value=2.6 Score=55.24 Aligned_cols=54 Identities=20% Similarity=0.147 Sum_probs=37.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
.+.......++|+|| --.|=++.....+ |.+++.+. .+..+|++||+.+.++.+
T Consensus 1073 ArALi~~PkVLLLDE--------PTSGLDp~sr~~l-~~lL~~l~-~g~TIIltTHdmdea~~l 1126 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDE--------PTSGVDPYSRRSI-WDLLLKYR-SGRTIIMSTHHMDEADLL 1126 (2272)
T ss_pred HHHHHcCCCEEEEEC--------CCcCCCHHHHHHH-HHHHHHHh-CCCEEEEEECCHHHHHHh
Confidence 344566778999999 6666666554444 45555553 477899999999887643
No 171
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.42 E-value=4.3 Score=39.74 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=38.3
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~ 426 (577)
+.-.+..+....++|+|| --.|-++.- ....+.++..+.+ .+..+|++||+.+...
T Consensus 149 v~la~al~~~p~lllLDE--------P~~~LD~~~-~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 149 VAIARALANDPKIILADE--------PTGNLDSET-GKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHHHccCCCEEEEcC--------CcccCCHHH-HHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 333344566778999999 666666643 3444555566665 4789999999987665
No 172
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=79.42 E-value=0.75 Score=44.98 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=32.5
Q ss_pred hhhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccc
Q psy13263 236 FHMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279 (577)
Q Consensus 236 f~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh 279 (577)
.++|..+... ++..++|+|.+||||+++.++...++.+.|.+
T Consensus 20 ~~~~~~l~~~--~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~ 61 (202)
T cd03243 20 VPNDINLGSG--RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF 61 (202)
T ss_pred EeeeEEEcCC--eEEEEECCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 3455555543 57788999999999999999977777777764
No 173
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=79.09 E-value=3.5 Score=40.48 Aligned_cols=53 Identities=9% Similarity=-0.033 Sum_probs=37.4
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHH-HHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARV-TLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~A-IlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
........++|+|| --.|-++.....+..+ +++.+.+.+..+|++||..+...
T Consensus 153 ral~~~p~illlDE--------Pt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 153 RALYQNTNIVFLDD--------PFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHhhCCCEEEEeC--------CccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 33455668999999 6666666655555553 66666555789999999998754
No 174
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=78.77 E-value=6.6 Score=41.11 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=67.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccce--ec---c-c---eeeecccccc---hhhhhc-
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAH--FG---C-T---VIYSEAQKKQ---KKYVLE- 358 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~--l~---~-d---~if~~iG~~q---StF~~E- 358 (577)
+|...+....|+.|...+|||+.-+++..|. ...-|..+-....- +. . + .+.-.+|-.. .+|=-|
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~--~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhel 110 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLE--EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHEL 110 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCc--CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCccc
Confidence 6777776677888999999998888775442 11111111000000 00 0 0 0000011100 111122
Q ss_pred ----hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh---c-CCeEEEecchHHHHHHhhc
Q psy13263 359 ----VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ---I-GCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 359 ----m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~---~-~~~~lfaTHy~eL~~l~~~ 430 (577)
..++...+..+-...|++.|| =||..| .++-..|+.-|.+ . +...||.||+..+.+....
T Consensus 111 SGGQrQRi~IARALal~P~liV~DE-----------pvSaLD-vSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 111 SGGQRQRIGIARALALNPKLIVADE-----------PVSALD-VSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred CchhhhhHHHHHHHhhCCcEEEecC-----------chhhcc-hhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 223333445566789999999 456555 3555566555544 3 8899999999999886654
No 175
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=78.67 E-value=4.3 Score=40.36 Aligned_cols=57 Identities=7% Similarity=-0.053 Sum_probs=36.8
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~ 426 (577)
.+.-.+.......++|+|| --.|-++..-..+. .++..+.+ .++.+|++||..+...
T Consensus 137 rv~laral~~~p~lllLDE--------P~~gLD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 137 RVALARCLVREQPILLLDE--------PFSALDPALRQEML-TLVSQVCQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3333444566778999999 66666555443333 34444444 3789999999998654
No 176
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=78.61 E-value=3.1 Score=41.06 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=35.7
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
..++|+|| .-.|.++..-..+. .+++.+.+.+..+|++||+.++.....
T Consensus 152 ~~~lllDE--------p~~~lD~~~~~~~~-~~l~~~~~~~~tii~itH~~~~~~~~~ 200 (213)
T cd03279 152 LEALFIDE--------GFGTLDPEALEAVA-TALELIRTENRMVGVISHVEELKERIP 200 (213)
T ss_pred CCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHhCCCEEEEEECchHHHHhhC
Confidence 36899999 77777776655553 445566655778999999998776543
No 177
>PRK06526 transposase; Provisional
Probab=78.55 E-value=5.3 Score=41.14 Aligned_cols=96 Identities=5% Similarity=-0.060 Sum_probs=54.7
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhh------hHHhhhcCCCce
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPS------KYASKAKSNHQR 373 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e------~~~il~~a~~~s 373 (577)
..+++||...|||.....++.-. .+-|.-| +|+... .++.++.. ....+..-..-.
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a---~~~g~~v-----------~f~t~~----~l~~~l~~~~~~~~~~~~l~~l~~~d 161 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRA---CQAGHRV-----------LFATAA----QWVARLAAAHHAGRLQAELVKLGRYP 161 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHH---HHCCCch-----------hhhhHH----HHHHHHHHHHhcCcHHHHHHHhccCC
Confidence 45678999999999988776422 2223211 121111 11111111 011111222346
Q ss_pred EEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 374 VATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 374 LVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
|++||| +|.--...++..+..-++..-..++ .+||+|++.
T Consensus 162 lLIIDD--------~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDE--------VGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred EEEEcc--------cccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 899999 9987666677677777776666554 488899883
No 178
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=78.43 E-value=6.2 Score=44.88 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=21.8
Q ss_pred ccccccccccccCCCCCCCchhHHHHHH
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
|........+|+|||.+|||+..+.+.-
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4444556677999999999999988753
No 179
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=78.37 E-value=9.9 Score=42.90 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCCCchhHHHHHHHHHHHHHhcccccccc--ceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccCcccc
Q psy13263 308 AGVDKEYDEVMDEIKSIEKEIQTYLRTQC--AHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYV 385 (577)
Q Consensus 308 ~gGKsvy~k~valI~~imaqig~~VpA~~--a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v 385 (577)
.++.-.+-+.-..|..++++.|..|+-.. +.++ +|. ..-.|+-... -..--|+|+||
T Consensus 108 ~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLs-------VG~---qQRVEIlKaL-----yr~a~iLILDE------ 166 (501)
T COG3845 108 KGGLIDRRQARARIKELSERYGLPVDPDAKVADLS-------VGE---QQRVEILKAL-----YRGARLLILDE------ 166 (501)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCCCccceeecCC-------cch---hHHHHHHHHH-----hcCCCEEEEcC------
Confidence 45566777888889889999997764322 2222 243 2233433322 22336889999
Q ss_pred cccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch-HHHHHHhh
Q psy13263 386 TPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY-HSVARRLR 429 (577)
Q Consensus 386 ~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy-~eL~~l~~ 429 (577)
-=.==.|.|-- =...++..|.+.|..+||.||= .|+.+++.
T Consensus 167 --PTaVLTP~E~~-~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaD 208 (501)
T COG3845 167 --PTAVLTPQEAD-ELFEILRRLAAEGKTIIFITHKLKEVMAIAD 208 (501)
T ss_pred --CcccCCHHHHH-HHHHHHHHHHHCCCEEEEEeccHHHHHHhhC
Confidence 21111222322 2346677888889999999996 56655554
No 180
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=78.17 E-value=2.8 Score=40.33 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=34.4
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSV 424 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL 424 (577)
.+.......|+|+|| -..|-++..-..+ +.++..+.+.+..+|++||+.++
T Consensus 139 aral~~~p~llllDE--------Pt~~LD~~~~~~~-~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 139 AGAVAMRPDVLLLDE--------PTAGLDPAGREQM-LAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHhcCCCEEEEcC--------CcccCCHHHHHHH-HHHHHHHHHcCCEEEEEeecccc
Confidence 344455668999999 6666666444333 44455555557899999999764
No 181
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=77.74 E-value=2.9 Score=54.92 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=40.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
.+.......++++|| --.|=++.-... .|.+++.+.+.+..+|++||+.+.++.+
T Consensus 2082 A~ALi~~P~VLLLDE--------PTsGLDp~sr~~-l~~lL~~l~~~g~TIILtTH~mee~e~l 2136 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDE--------PTTGMDPQARRM-LWNTIVSIIREGRAVVLTSHSMEECEAL 2136 (2272)
T ss_pred HHHHhcCCCEEEEEC--------CCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 344556778999999 777777765544 4456666766688999999999877643
No 182
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=77.48 E-value=5 Score=39.44 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=35.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+......-++|+|| --.|-++.--. ..+.++..+.+. +..+|++||+.+...
T Consensus 157 aral~~~p~lllLDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~ 210 (228)
T cd03257 157 ARALALNPKLLIADE--------PTSALDVSVQA-QILDLLKKLQEELGLTLLFITHDLGVVA 210 (228)
T ss_pred HHHHhcCCCEEEecC--------CCCCCCHHHHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 334455678999999 66666654433 333444455544 789999999988665
No 183
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=77.44 E-value=8.4 Score=43.91 Aligned_cols=29 Identities=3% Similarity=-0.005 Sum_probs=22.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+||+.+|||+..+.+.-
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34555556678999999999999998743
No 184
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.25 E-value=9.6 Score=43.56 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=59.1
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcc
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGID 451 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~ 451 (577)
..++|+|| .-.|-++.....++. ++..|.. +..+|++||.+.+..++.. |+.+.... .+..
T Consensus 463 ~~~lilDE--------p~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~-------~~~l~k~~--~~~~ 523 (563)
T TIGR00634 463 VTTLIFDE--------VDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADA-------HFKVEKEG--LDGR 523 (563)
T ss_pred CCEEEEEC--------CCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCe-------EEEEEEcc--CCCc
Confidence 47999999 888888876655554 3444543 7889999999988864432 22222111 0112
Q ss_pred eEEEEEeecCCCCCCcHHHHHHHHcC---CCHHHHHHHHHHH
Q psy13263 452 TIVFLYKLVPGICPKSFGFNVAELAG---IPEDVVKFGTTVA 490 (577)
Q Consensus 452 ~l~flYkL~~G~~~~SyGi~vArlaG---lP~~VI~rA~ei~ 490 (577)
+.+-...| ...--=-+||||+| +-+.-+..|++++
T Consensus 524 t~s~i~~L----~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 524 TATRVRPL----SGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EEEEEEEC----CccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 22322333 33445578999984 4566788888775
No 185
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=77.23 E-value=4.9 Score=40.13 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=34.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.......++|+|| --.|-++.--..+ ..++..|.+.++.+|++||+.++...
T Consensus 158 ral~~~p~illLDE--------Pt~~LD~~~~~~l-~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 158 QMAVLEPELCILDE--------SDSGLDIDALKIV-ADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHcCCCEEEEeC--------CCccCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 34455668999999 5555555433333 33445565557889999999887654
No 186
>PRK08727 hypothetical protein; Validated
Probab=77.19 E-value=10 Score=38.25 Aligned_cols=92 Identities=8% Similarity=-0.057 Sum_probs=52.8
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeeccc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEt 380 (577)
..+.||...|||.....++.-. . +-|. ..+|+.... +...+..... .-..--+++|||
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~--~-~~~~-----------~~~y~~~~~----~~~~~~~~~~---~l~~~dlLiIDD- 101 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAA--E-QAGR-----------SSAYLPLQA----AAGRLRDALE---ALEGRSLVALDG- 101 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--H-HcCC-----------cEEEEeHHH----hhhhHHHHHH---HHhcCCEEEEeC-
Confidence 3578999999999998876422 1 1121 223433332 2222222221 222335899999
Q ss_pred CcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 381 VENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 381 g~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
++.-....+......-++.++...+..+|+|++.
T Consensus 102 -------i~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 102 -------LESIAGQREDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred -------cccccCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 8876654433333345666666667789999985
No 187
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=77.07 E-value=4.9 Score=39.13 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=35.8
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.-++.......|+|+|| --.|-++.--..+.. ++..+.+.++.+|++||..+....
T Consensus 143 v~laral~~~p~llllDE--------Pt~~LD~~~~~~~~~-~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 143 VAIAGVLAMDPDILLLDE--------PTAGLDPAGRRELLE-LLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred HHHHHHHhcCCCEEEEcC--------CcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHH
Confidence 333344455668999999 555555544433333 334444447899999999876653
No 188
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=76.97 E-value=7.9 Score=44.25 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=21.6
Q ss_pred ccccccccccccCCCCCCCchhHHHHH
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
|........+|+|||.+|||+..+.+.
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 455556667899999999999998774
No 189
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=76.94 E-value=5.8 Score=38.87 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=35.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.-...+ +.++..+.+.++.+|++||+.+...
T Consensus 144 aral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 144 ARALMSRPKLLLLDE--------PSEGLAPKIVEEI-FEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred HHHHhcCCCEEEECC--------CcccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 344456778999999 6666666544333 3444455555789999999988644
No 190
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=76.88 E-value=5.4 Score=40.00 Aligned_cols=53 Identities=19% Similarity=0.041 Sum_probs=35.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+..+....++|+|| --.|-++.-- ...+.+++.+.+.+..+|++||+.+...
T Consensus 156 a~al~~~p~lllLDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~~tvi~~tH~~~~~~ 208 (250)
T PRK11264 156 ARALAMRPEVILFDE--------PTSALDPELV-GEVLNTIRQLAQEKRTMVIVTHEMSFAR 208 (250)
T ss_pred HHHHhcCCCEEEEeC--------CCccCCHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 344455678999999 5555555332 3334455566655788999999987654
No 191
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=76.76 E-value=4.5 Score=51.60 Aligned_cols=60 Identities=10% Similarity=-0.013 Sum_probs=36.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHH-HhcCCeEEEecchHHHHHHh
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKF-LQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L-~~~~~~~lfaTHy~eL~~l~ 428 (577)
+++-.+.......++|+|| .-.+-++.-+..|...+++.. ..++..+|++||..++...+
T Consensus 768 RiaLARAl~~~~~illLDE--------p~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 768 RVSLARAVYSNADIYLFDD--------PLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 3333344456678999999 555555554444444444311 12367899999998876643
No 192
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=76.69 E-value=4.8 Score=40.28 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=34.7
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+..+....++|+|| --.|-++..-..+.. ++..+.+. ++.+|++||..+...
T Consensus 166 ~al~~~p~llllDE--------Pt~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 166 AALLHEPEILFLDE--------PTIGLDVVAQENIRN-FLKEYNRERGTTVLLTSHYMKDIE 218 (236)
T ss_pred HHHhcCCCEEEEcC--------CCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEecCHHHHH
Confidence 34455668999999 666666655444443 34444443 789999999988654
No 193
>PRK10869 recombination and repair protein; Provisional
Probab=76.66 E-value=11 Score=43.16 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=57.6
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcc
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGID 451 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~ 451 (577)
..++|+|| +-.|.+...+..++. ++..|.. ++.+|++||.+.++.++.. |+.+.... .+
T Consensus 453 ~~~li~DE--------pd~gld~~~~~~v~~-~l~~l~~-~~qvi~iTH~~~~~~~ad~-------~~~v~k~~----~~ 511 (553)
T PRK10869 453 TPALIFDE--------VDVGISGPTAAVVGK-LLRQLGE-STQVMCVTHLPQVAGCGHQ-------HFFVSKET----DG 511 (553)
T ss_pred CCEEEEEC--------CCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHhCCE-------EEEEeccc----cC
Confidence 46889999 888877755444333 3333332 6789999999998865543 43333211 01
Q ss_pred eEEEEEeecCCCCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q psy13263 452 TIVFLYKLVPGICPKSFGFNVAELAG---IPEDVVKFGTTVAF 491 (577)
Q Consensus 452 ~l~flYkL~~G~~~~SyGi~vArlaG---lP~~VI~rA~ei~~ 491 (577)
..+ |.-+.-....--=-+||||+| +.+.-+..|++++.
T Consensus 512 ~~t--~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl~ 552 (553)
T PRK10869 512 GMT--ETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELLA 552 (553)
T ss_pred Cee--eEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 111 111111344556678999984 46777888888753
No 194
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=76.54 E-value=0.88 Score=44.49 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=27.8
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccCcccc
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh 279 (577)
.+.+++|+|++||||++|.++...++.+.|.+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~ 60 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP 60 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCCC
Confidence 35678899999999999999987888888865
No 195
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=76.34 E-value=5.3 Score=39.35 Aligned_cols=51 Identities=8% Similarity=-0.004 Sum_probs=34.7
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.......|+|+|| --.|-++..-..+.. ++..+.+.++.+|++||..++..
T Consensus 163 al~~~p~llllDE--------Pt~~LD~~~~~~l~~-~l~~~~~~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 163 GFIADYPILLLDE--------PTASLDAANRQVVVE-LIAEAKARGAALIGIFHDEEVRE 213 (224)
T ss_pred HHhcCCCEEEEcC--------CcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHH
Confidence 3344557999999 666666555444443 34444555789999999988775
No 196
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=76.03 E-value=6 Score=38.52 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=35.2
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++..-. ....++..+.+.+..+|++||..+...
T Consensus 148 aral~~~p~llllDE--------Pt~~LD~~~~~-~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 148 ARAIVNSPTILIADE--------PTGNLDPDTTW-EIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHHHHcCCCEEEEeC--------CCCcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 344456678999999 55666654433 333444455555788999999987665
No 197
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=75.94 E-value=4.8 Score=40.39 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=38.1
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
++.-.........++|+|| --.|-+...-..+. .++..+.+.+..+|++||..++...
T Consensus 159 rv~la~al~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 159 RNEILQMALLDSELAILDE--------TDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred HHHHHHHHHcCCCEEEEcC--------CcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHh
Confidence 3333344456678999999 66666655544444 4444555557889999999887764
No 198
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=75.86 E-value=5.7 Score=40.10 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=37.8
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.++.-.+..+....|+|+|| --.|-++.--..+. .++..+...+..+|++||+.+...
T Consensus 145 qrv~laral~~~p~llllDE--------P~~~LD~~~~~~l~-~~l~~l~~~~~tiii~tH~~~~~~ 202 (255)
T PRK11231 145 QRAFLAMVLAQDTPVVLLDE--------PTTYLDINHQVELM-RLMRELNTQGKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcC--------CcccCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHH
Confidence 33433445566778999999 66676664433333 334445555788999999988654
No 199
>PRK06921 hypothetical protein; Provisional
Probab=75.76 E-value=7.4 Score=40.30 Aligned_cols=97 Identities=8% Similarity=-0.077 Sum_probs=55.2
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhh----hHHhhhcCCCceEE
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPS----KYASKAKSNHQRVA 375 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e----~~~il~~a~~~sLV 375 (577)
...++||...|||.....++.- +..+-|. ..+|+.... +..++.. ....+.....--|+
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~--l~~~~g~-----------~v~y~~~~~----l~~~l~~~~~~~~~~~~~~~~~dlL 181 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANE--LMRKKGV-----------PVLYFPFVE----GFGDLKDDFDLLEAKLNRMKKVEVL 181 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHH--HhhhcCc-----------eEEEEEHHH----HHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 3457899999999999877653 2222121 123322211 1111111 11112222334799
Q ss_pred eecccCccccccccc---CCC--CcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 376 TKKKNVENYVTPECR---GTG--TNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 376 LlDEtg~n~v~~LGR---GTs--t~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
+||+ |+. |+. +.........|+.+-...+..+|+||++
T Consensus 182 iIDD--------l~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 182 FIDD--------LFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred EEec--------cccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9999 966 653 3334455677888877766778999997
No 200
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=75.72 E-value=6 Score=38.78 Aligned_cols=57 Identities=9% Similarity=-0.055 Sum_probs=36.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
++...+..+....++|+|| --.|-++.--..+ ..+++.+.+. ++.+|++||+.++..
T Consensus 136 rl~laral~~~p~llllDE--------Pt~~LD~~~~~~~-~~~l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDE--------PFSALDPLLREEM-LALVKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3333344456678999999 6666655444333 3344455544 789999999987654
No 201
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=75.72 E-value=5.5 Score=38.99 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=37.0
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......++|+|| --.|-++.--..+. .++..+.+.+..+|++||+.+...
T Consensus 146 rv~laral~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADE--------PTGNLDPELSRDIM-RLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3333444566778999999 66666655444433 344445445788999999987665
No 202
>KOG0927|consensus
Probab=75.67 E-value=4.8 Score=45.91 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
.|.....++-|++|||.+||+++++.++
T Consensus 95 ~~El~~g~rygLiG~nG~Gkst~L~~i~ 122 (614)
T KOG0927|consen 95 TLELNRGRRYGLIGPNGSGKSTFLRAIA 122 (614)
T ss_pred eEEecCCceEEEEcCCCCcHhHHHHHHh
Confidence 4555566778999999999999999774
No 203
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=75.55 E-value=6.6 Score=40.10 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=40.6
Q ss_pred hhhHHhhhcCCCceEEeecc-cCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhc
Q psy13263 360 PSKYASKAKSNHQRVATKKK-NVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDE-tg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~ 430 (577)
.+.+..+..+....|+|-|| ||. |.. +-......++..+.+. +..+|++||+.+++..+..
T Consensus 149 QRVAIARAL~~~P~iilADEPTgn-----LD~-----~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGN-----LDS-----KTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCcccc-----CCh-----HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 34555666778889999999 333 221 2222334445555544 8899999999999997764
No 204
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=75.52 E-value=5.8 Score=39.50 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=36.9
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH-HHHHh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS-VARRL 428 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e-L~~l~ 428 (577)
.+.......++|+|| --.|-++. +....+.++..+.+.+..+|++||+.+ +.++.
T Consensus 149 a~al~~~p~illlDE--------Pt~~LD~~-~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (237)
T PRK11614 149 GRALMSQPRLLLLDE--------PSLGLAPI-IIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 204 (237)
T ss_pred HHHHHhCCCEEEEcC--------ccccCCHH-HHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhC
Confidence 344455678999999 66666653 344445556666666788999999976 44444
No 205
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=75.33 E-value=8.2 Score=45.25 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=31.3
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHHh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRL 428 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l~ 428 (577)
....++|+|| -|+.-|-.. ...|.+ ... .+..+|++||..++...+
T Consensus 634 ~~p~ILILDE-----------pTSaLD~~t-e~~i~~-~~~~~~~TvIiItHrl~~i~~a 680 (711)
T TIGR00958 634 RKPRVLILDE-----------ATSALDAEC-EQLLQE-SRSRASRTVLLIAHRLSTVERA 680 (711)
T ss_pred cCCCEEEEEc-----------cccccCHHH-HHHHHH-hhccCCCeEEEEeccHHHHHhC
Confidence 3667889999 677777632 344444 333 367899999998776544
No 206
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=75.29 E-value=14 Score=38.21 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=33.8
Q ss_pred HHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhhc
Q psy13263 363 YASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 363 ~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~~ 430 (577)
+..+..+...-+.|+|| ||| -=+..-...+---+++-+.+.+..++|+||+.+=+-++..
T Consensus 140 aiARAL~~~P~lLLlDE-------PFg-ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~Lsd 199 (248)
T COG1116 140 AIARALATRPKLLLLDE-------PFG-ALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLAD 199 (248)
T ss_pred HHHHHHhcCCCEEEEcC-------Ccc-hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhC
Confidence 33455677788999999 343 1111111122222222222338899999999876665543
No 207
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.01 E-value=6.2 Score=38.53 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=35.2
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.-.+......-++|+|| --.|-++.--. ..+.++..+.+. +..+|++||+.+...
T Consensus 139 l~la~al~~~p~~lllDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 139 VALARALAREPSLLLLDE--------PLSALDAKLRE-ELREELKELQRELGITTIYVTHDQEEAL 195 (213)
T ss_pred HHHHHHHhcCCCEEEEcC--------CcccCCHHHHH-HHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 333344556678999999 55555554333 333444455543 788999999987544
No 208
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=74.91 E-value=6.1 Score=39.40 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=35.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
++..+...-++|+|| --.|-++.--..+...+ ..+.+. +..+|++||+.+...
T Consensus 126 a~al~~~p~lllLDE--------Pt~gLD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 126 ARALSIRPKVLLLDE--------PFGALDALTRGNLQEEL-MQIWEEHRVTVLMVTHDVDEAL 179 (230)
T ss_pred HHHHHcCCCEEEEcC--------CCcCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHH
Confidence 344455668999999 66777765544444333 344443 788999999987654
No 209
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.71 E-value=6.2 Score=38.66 Aligned_cols=56 Identities=13% Similarity=0.015 Sum_probs=36.8
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.-++.......++|+|| --.|-++.-.. ..+.++..+.+. ++.+|++||..+...
T Consensus 140 v~la~al~~~p~llllDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 140 VALARALAAQPELLLLDE--------PFSALDRALRL-QLLPELKQIKKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred HHHHHHHhcCCCEEEEcC--------CcccCCHHHHH-HHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence 333344566778999999 66666654433 333445555554 788999999987654
No 210
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.69 E-value=5.9 Score=41.08 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=35.3
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
...+....++|+|| --.|-++.-. .....+++.|.+.+..+|++||+.+...
T Consensus 157 ~aL~~~p~illLDE--------Pt~gLD~~~~-~~l~~~l~~l~~~g~til~vtHd~~~~~ 208 (288)
T PRK13643 157 GILAMEPEVLVLDE--------PTAGLDPKAR-IEMMQLFESIHQSGQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHhCCCEEEEEC--------CccCCCHHHH-HHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 33455668999999 6666665433 3333455666655789999999988664
No 211
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=74.58 E-value=6.4 Score=38.42 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=36.0
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+..+....++|+|| --.|-++.--..+.. +++.+.+.+..+|++||..+...
T Consensus 146 l~la~al~~~p~lllLDE--------Pt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADE--------PTGNLDPDLSERILD-LLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred HHHHHHHhCCCCEEEEeC--------CcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHH
Confidence 333344556778999999 655655554443333 33444555789999999987655
No 212
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=74.56 E-value=5.4 Score=45.99 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=41.7
Q ss_pred chhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH--HHHHHhhc
Q psy13263 358 EVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH--SVARRLRE 430 (577)
Q Consensus 358 Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~--eL~~l~~~ 430 (577)
|-+++...+.......++++|| -=.|-++.....+... ++.+.+.+..+|++||.. ++.+++..
T Consensus 171 qrkRvsia~aL~~~p~vlllDE--------PtsgLD~~~~~~l~~~-L~~l~~~g~tvi~~~hq~~~~i~~~~D~ 236 (617)
T TIGR00955 171 ERKRLAFASELLTDPPLLFCDE--------PTSGLDSFMAYSVVQV-LKGLAQKGKTIICTIHQPSSELFELFDK 236 (617)
T ss_pred hhhHHHHHHHHHcCCCEEEeeC--------CCcchhHHHHHHHHHH-HHHHHhCCCEEEEEeCCCCHHHHHHhce
Confidence 3444444455566778999999 6666666655544444 344555588999999995 56666653
No 213
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=74.55 E-value=6 Score=40.29 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=34.9
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
.+.......++|+|| --.|-++..- ...+.+++.+.+. +..+|++||..+....
T Consensus 162 aral~~~p~illLDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~g~tiiivsH~~~~~~~ 216 (265)
T TIGR02769 162 ARALAVKPKLIVLDE--------AVSNLDMVLQ-AVILELLRKLQQAFGTAYLFITHDLRLVQS 216 (265)
T ss_pred HHHHhcCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 334455668999999 5555554332 2334444555544 7889999999887753
No 214
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=74.47 E-value=17 Score=41.82 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=49.7
Q ss_pred HHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchh--hHHH
Q psy13263 325 EKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGC--VIAR 402 (577)
Q Consensus 325 maqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~--ALA~ 402 (577)
.+.+..+|+. .-|+|.+.-+-|.+.| ..+..+++-.+..-.+..|+|+|| =|+.-|-- .+-.
T Consensus 433 ~a~l~~~v~~---p~GLdt~ige~G~~LS--gGQ~QRlaLARAll~~~~l~llDE-----------pTA~LD~etE~~i~ 496 (559)
T COG4988 433 QAGLLEFVPK---PDGLDTVIGEGGAGLS--GGQAQRLALARALLSPASLLLLDE-----------PTAHLDAETEQIIL 496 (559)
T ss_pred HhcHHHhhcC---CCcccchhccCCCCCC--HHHHHHHHHHHHhcCCCCEEEecC-----------CccCCCHhHHHHHH
Confidence 3444444533 2344544444455445 455666655555566789999999 45555532 2222
Q ss_pred HHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 403 VTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 403 AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
..+..|.+ +..+|++||-.+...-+
T Consensus 497 ~~l~~l~~-~ktvl~itHrl~~~~~~ 521 (559)
T COG4988 497 QALQELAK-QKTVLVITHRLEDAADA 521 (559)
T ss_pred HHHHHHHh-CCeEEEEEcChHHHhcC
Confidence 22333333 57999999998766544
No 215
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=74.41 E-value=8.8 Score=42.98 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=21.4
Q ss_pred ccccccccccccCCCCCCCchhHHHHH
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
|........+|+||+.+|||+..+.+.
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLL 369 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 444455667799999999999999874
No 216
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.33 E-value=5.4 Score=41.19 Aligned_cols=58 Identities=9% Similarity=-0.029 Sum_probs=38.9
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
++.-....+....|+|+|| --.|-++..-..|.. ++..+.+. +..+|++||..++..+
T Consensus 151 rv~laral~~~P~llllDE--------Pt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~ 209 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDE--------STSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANM 209 (282)
T ss_pred HHHHHHHHHcCCCEEEEEC--------CcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHh
Confidence 3333344556778999999 666766665544444 44455554 7899999999987653
No 217
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=74.27 E-value=6.7 Score=38.45 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=36.0
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
+.-.+.......++|+|| --.|-++.--..+ +.++..+.+. +..+|++||+.+....
T Consensus 150 v~laral~~~p~illlDE--------Pt~~LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 150 VAIARALVNQPSLVLADE--------PTGNLDNNNAKII-FDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HHHHHHHhCCCCEEEEeC--------CCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 333344556678999999 5555554433333 3445555543 7889999999876543
No 218
>PLN03232 ABC transporter C family member; Provisional
Probab=74.21 E-value=6.4 Score=50.17 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=35.2
Q ss_pred chhhhHHhhhcCCCceEEeecccCcccccccccCCCCcc---hhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 358 EVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTND---GCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 358 Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~D---G~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
+-.+++-.+..-...-++|+|| -|+.-| +..|...++..+. ++..+|++||...+...+
T Consensus 745 QkQRIaLARAly~~~~IlLLDE-----------ptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~a 806 (1495)
T PLN03232 745 QKQRVSMARAVYSNSDIYIFDD-----------PLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLM 806 (1495)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC-----------CccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhC
Confidence 3334443344445667999999 455555 4334444443332 367889999998776544
No 219
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=74.04 E-value=9.6 Score=39.72 Aligned_cols=114 Identities=8% Similarity=-0.015 Sum_probs=57.1
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhcccccc-ccceeccceeee-cccccchhhhhchhhhHHhhhcCCCceEEeec
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRT-QCAHFGCTVIYS-EAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA-~~a~l~~d~if~-~iG~~qStF~~Em~e~~~il~~a~~~sLVLlD 378 (577)
.+++||...|||..-+.++.+. .++|. ++. ....+.++.+.. -+|. +. ..+..++..+. +++++||
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l---~~~g~-~~~~~~v~v~~~~l~~~~~g~--~~-----~~~~~~~~~a~-~gvL~iD 128 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQIL---HRLGY-VRKGHLVSVTRDDLVGQYIGH--TA-----PKTKEILKRAM-GGVLFID 128 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH---HHcCC-cccceEEEecHHHHhHhhccc--ch-----HHHHHHHHHcc-CcEEEEe
Confidence 4578999999999998887643 34442 111 011111111100 0121 11 11222333333 4788999
Q ss_pred ccCcccccccccCC----CCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhcCCCc
Q psy13263 379 KNVENYVTPECRGT----GTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLREEPNV 434 (577)
Q Consensus 379 Etg~n~v~~LGRGT----st~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~~~~V 434 (577)
| ++.=+ ...-|..+...+++.|-.. ++++|++|+-..+-.+....|.+
T Consensus 129 E--------i~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L 182 (284)
T TIGR02880 129 E--------AYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGF 182 (284)
T ss_pred c--------hhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHH
Confidence 9 76322 1122333444455555444 67888888876555554444433
No 220
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.04 E-value=6.2 Score=40.49 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=35.2
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+..+....|+|+|| --.|-++.--. ..+.++..+.+.+..+|++||..+...
T Consensus 157 a~al~~~p~lllLDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~tiiivsH~~~~~~ 209 (280)
T PRK13649 157 AGILAMEPKILVLDE--------PTAGLDPKGRK-ELMTLFKKLHQSGMTIVLVTHLMDDVA 209 (280)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHHH-HHHHHHHHHHHCCCEEEEEeccHHHHH
Confidence 344456678999999 66666654433 333444455545789999999987664
No 221
>PLN03130 ABC transporter C family member; Provisional
Probab=73.84 E-value=6.7 Score=50.43 Aligned_cols=157 Identities=12% Similarity=0.118 Sum_probs=73.3
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccCc-ccccCccccccccc-ccccccccccccccCCCCCCCchhHHHHHHHHHHH
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTPS-GCFPDMSELLKYFE-NAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIE 325 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~~-GrhPlLe~~l~~~~-n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~im 325 (577)
.++.+.|+...||||+++.+.. .+.... |..- +...+.|++ +.+-....-+..|+.-+.--+..|.+++...+ +.
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG-~~~~~~GG~I~-l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~-L~ 720 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAMLG-ELPPRSDASVV-IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTA-LQ 720 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHHH-hhccCCCceEE-EcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhC-cH
Confidence 3455678889999999998864 233333 3321 111122221 11111111111122211112455666655443 44
Q ss_pred HHhccccccc-cceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcc---hhhHH
Q psy13263 326 KEIQTYLRTQ-CAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTND---GCVIA 401 (577)
Q Consensus 326 aqig~~VpA~-~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~D---G~ALA 401 (577)
..+.. +|.. ...+| .-|...| ..+-.+++-.+..-...-++|+|| -|+..| +..|.
T Consensus 721 ~di~~-LP~Gd~T~IG------e~G~~LS--GGQKQRIaLARAly~~~~IlLLDE-----------ptSALD~~~~~~I~ 780 (1622)
T PLN03130 721 HDLDL-LPGGDLTEIG------ERGVNIS--GGQKQRVSMARAVYSNSDVYIFDD-----------PLSALDAHVGRQVF 780 (1622)
T ss_pred HHHHh-CCCccccccc------CCCCCCC--HHHHHHHHHHHHHhCCCCEEEECC-----------CccccCHHHHHHHH
Confidence 44331 1221 11111 0121113 223334433344445567999999 455555 33444
Q ss_pred HHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 402 RVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 402 ~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
..++..+. ++..+|++||...+...+
T Consensus 781 ~~~l~~~l-~~kTvIlVTH~l~~l~~a 806 (1622)
T PLN03130 781 DKCIKDEL-RGKTRVLVTNQLHFLSQV 806 (1622)
T ss_pred HHHhhHHh-cCCEEEEEECCHhHHHhC
Confidence 44443333 367889999998776544
No 222
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=73.74 E-value=6.3 Score=39.19 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=34.4
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++..-. ..+.++..+.+. +..+|++||..+...
T Consensus 138 ral~~~p~vllLDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~~tiii~sH~~~~~~ 190 (230)
T TIGR02770 138 LALLLEPPFLIADE--------PTTDLDVVNQA-RVLKLLRELRQLFGTGILLITHDLGVVA 190 (230)
T ss_pred HHHhcCCCEEEEcC--------CccccCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34455667999999 66666654433 333444455554 789999999987654
No 223
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=73.71 E-value=6.6 Score=38.81 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=35.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.-...+. .++..+.+. +..+|++||..+...
T Consensus 143 a~al~~~p~illlDE--------Pt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~ 196 (230)
T TIGR03410 143 ARALVTRPKLLLLDE--------PTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFAR 196 (230)
T ss_pred HHHHhcCCCEEEecC--------CcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 344455778999999 66666554443333 344455554 788999999988665
No 224
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.66 E-value=6 Score=40.69 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=36.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
....+....++|+|| --.|-++..-..+ ..++..+.+.++.+|++||+.+...
T Consensus 150 araL~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 150 AGVLAMDPDVIVLDE--------PMAYLDPRGQETL-MEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHcCCCEEEEEC--------CCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 344566778999999 6666666554444 3444455555789999999998764
No 225
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.52 E-value=6 Score=40.89 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=35.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++..- ...+.++..+.+. ++.+|++||+.+...
T Consensus 162 aral~~~p~lLlLDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~~~tiiiisH~~~~~~ 215 (289)
T PRK13645 162 AGIIAMDGNTLVLDE--------PTGGLDPKGE-EDFINLFERLNKEYKKRIIMVTHNMDQVL 215 (289)
T ss_pred HHHHHhCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 344455668999999 6666666443 3444455555554 789999999987543
No 226
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=73.37 E-value=6.4 Score=39.85 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=38.0
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
.++..++.......++|+|| --.|-++.--. ..+.++..+.+. +..+|++||+.+....
T Consensus 158 qrl~laral~~~p~llllDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDE--------PTGGLDVSVQA-RLLDLLRGLVRELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcC--------CcccCCHHHHH-HHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 33433444566778999999 66666654333 333444455554 7899999999988763
No 227
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=73.28 E-value=4.3 Score=38.16 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=28.6
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc---CCeEEEecchHHHH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI---GCLTVFATHYHSVA 425 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~---~~~~lfaTHy~eL~ 425 (577)
++++||| .-.+=.| .+...+++.|... ++.+|+|||-..|.
T Consensus 259 ~illiDE--------pE~~LHp----~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 259 SILLIDE--------PENHLHP----SWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp SEEEEES--------SSTTSSH----HHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eEEEecC--------CcCCCCH----HHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 9999999 6666666 3445566666543 58999999987654
No 228
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.20 E-value=6.9 Score=40.53 Aligned_cols=52 Identities=8% Similarity=0.093 Sum_probs=37.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+..+....|+|+|| --.|-++..- .....++..|.+.+..+|++||+.+...
T Consensus 158 ral~~~p~lLlLDE--------Pt~gLD~~~~-~~l~~~l~~l~~~g~tvlivsH~~~~~~ 209 (287)
T PRK13641 158 GVMAYEPEILCLDE--------PAAGLDPEGR-KEMMQLFKDYQKAGHTVILVTHNMDDVA 209 (287)
T ss_pred HHHHcCCCEEEEEC--------CCCCCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 34455678999999 7777776443 4445566666655789999999988665
No 229
>PRK06893 DNA replication initiation factor; Validated
Probab=73.13 E-value=7.5 Score=38.98 Aligned_cols=92 Identities=10% Similarity=-0.033 Sum_probs=50.6
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccC
Q psy13263 302 GNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNV 381 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg 381 (577)
.+.||...|||....+++.-. ..+ +. ..+|...... ..|..+ ++.......+++|||
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~--~~~-~~-----------~~~y~~~~~~-~~~~~~------~~~~~~~~dlLilDD-- 99 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHY--LLN-QR-----------TAIYIPLSKS-QYFSPA------VLENLEQQDLVCLDD-- 99 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHH--HHc-CC-----------CeEEeeHHHh-hhhhHH------HHhhcccCCEEEEeC--
Confidence 477999999999999887532 111 11 2233333220 111111 122223446999999
Q ss_pred cccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 382 ENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 382 ~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
++......+.......++..+.+.+..+|++|+..
T Consensus 100 ------i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 100 ------LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred ------hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 98865444433345556666666665555555543
No 230
>PTZ00243 ABC transporter; Provisional
Probab=72.90 E-value=5.8 Score=50.80 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=35.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
.+.......++|+|| .-.+-++..+..+...++.... .+..+|++||..++...+
T Consensus 794 ARAl~~~p~illLDE--------P~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~~a 848 (1560)
T PTZ00243 794 ARAVYANRDVYLLDD--------PLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVPRA 848 (1560)
T ss_pred HHHHhcCCCEEEEcC--------ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhC
Confidence 344455678999999 5555555444444444332222 367899999999887653
No 231
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=72.67 E-value=6.7 Score=41.28 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=38.7
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH-HHhh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA-RRLR 429 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~-~l~~ 429 (577)
....+...-|+|+|| --.|-++. +....+.++..|.+.+..+|++||+.+.. +++.
T Consensus 177 A~aL~~~P~lLlLDE--------Pt~~LD~~-~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 177 AGILAMEPDFLVFDE--------PTAGLDPQ-GVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred HHHHHhCCCEEEEeC--------CCCCCCHH-HHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC
Confidence 344456678999999 66666653 44555566667766688999999998754 4443
No 232
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=72.65 E-value=7 Score=38.15 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=35.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+......-++|+|| --.|-++.--..+... +..+.+.+..+|++||..+...
T Consensus 144 a~al~~~p~llllDE--------Pt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 144 ARALVQDPDLLLLDE--------PFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVL 196 (213)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHH
Confidence 344456778999999 6666666544444433 3344445788999999987654
No 233
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=72.65 E-value=7.2 Score=38.91 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=36.2
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH-HHHHhh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS-VARRLR 429 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e-L~~l~~ 429 (577)
.+.......++|+|| --.|-++..-.. .+.++..+.+.+..+|++||..+ +..+..
T Consensus 149 aral~~~p~llllDE--------Pt~~LD~~~~~~-l~~~l~~~~~~g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 149 ARALAANPKFILLDE--------PFAGVDPISVID-IKRIIEHLRDSGLGVLITDHNVRETLAVCE 205 (241)
T ss_pred HHHHhcCCCEEEEcC--------CcccCCHHHHHH-HHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 344456778999999 555555443322 34556666666789999999985 444443
No 234
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.58 E-value=7.3 Score=39.90 Aligned_cols=53 Identities=13% Similarity=-0.028 Sum_probs=35.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.-.. ..+.++..+... +..+|++||..+...
T Consensus 172 Aral~~~p~illLDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 172 ARALAVDPDILLMDE--------AFSALDPLIRR-EMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HHHHhcCCCEEEEcC--------CCccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 344456778999999 66666664433 344445555544 789999999987643
No 235
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=72.53 E-value=7.1 Score=39.59 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=34.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|-++..-..+ ..+++.+.+. +..+|++||+.++..
T Consensus 165 ral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~tH~~~~~~ 217 (262)
T PRK09984 165 RALMQQAKVILADE--------PIASLDPESARIV-MDTLRDINQNDGITVVVTLHQVDYAL 217 (262)
T ss_pred HHHhcCCCEEEecC--------ccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 33455668999999 6666665544444 3445555543 789999999998644
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=72.44 E-value=12 Score=38.40 Aligned_cols=103 Identities=7% Similarity=-0.098 Sum_probs=60.6
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccc----hhhh-hchhhhHHhhhcCCCceEE
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQ----KKYV-LEVPSKYASKAKSNHQRVA 375 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~q----StF~-~Em~e~~~il~~a~~~sLV 375 (577)
.++.||...|||.....++.- + .+-|. ..+|..+.+-. .+|. .+... ..++..-..-.|+
T Consensus 102 ~~l~G~~GtGKThLa~aia~~--l-~~~g~-----------~v~~it~~~l~~~l~~~~~~~~~~~-~~~l~~l~~~dlL 166 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNE--L-LLRGK-----------SVLIITVADIMSAMKDTFSNSETSE-EQLLNDLSNVDLL 166 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHH--H-HhcCC-----------eEEEEEHHHHHHHHHHHHhhccccH-HHHHHHhccCCEE
Confidence 457789999999998877642 2 22231 12333322200 1221 01110 1122222345688
Q ss_pred eecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch--HHHHH
Q psy13263 376 TKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY--HSVAR 426 (577)
Q Consensus 376 LlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy--~eL~~ 426 (577)
+||+ +|.-..+.-+..+...|+++=...+..||++|-+ -+|..
T Consensus 167 vIDD--------ig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 167 VIDE--------IGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred EEeC--------CCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 9999 9987777777778888888877667888899987 34444
No 237
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=72.35 E-value=6.3 Score=38.44 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=36.9
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
.+.......++|+|| --.|-++..-..+. .++..+.+.+..+|++||+.+....+
T Consensus 141 a~al~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 141 ARLWLTRAPLWILDE--------PFTAIDKQGVARLE-ALLAQHAEQGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHhcCCCEEEEeC--------CCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecChhhhccC
Confidence 344556778999999 66666665554443 44444445578899999998776654
No 238
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=72.29 E-value=7.7 Score=38.64 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=34.9
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.........++|+|| --.|-++.- ......+++.+.+. ++.+|++||..+...
T Consensus 157 a~al~~~p~llllDE--------Pt~~LD~~~-~~~l~~~l~~~~~~~~~tiii~tH~~~~~~ 210 (243)
T TIGR02315 157 ARALAQQPDLILADE--------PIASLDPKT-SKQVMDYLKRINKEDGITVIINLHQVDLAK 210 (243)
T ss_pred HHHHhcCCCEEEEeC--------CcccCCHHH-HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 344456678999999 555555543 33334555556554 788999999987653
No 239
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=72.18 E-value=7.5 Score=39.53 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=35.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.--..+. .++..+.+. +..+|++||..+...
T Consensus 132 aral~~~p~lllLDE--------Pt~~LD~~~~~~l~-~~L~~~~~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 132 ARALLNRPQLLVLDE--------PTQGVDVNGQVALY-DLIDQLRRELDCAVLMVSHDLHLVM 185 (251)
T ss_pred HHHHhcCCCEEEEeC--------CCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHH
Confidence 334455678999999 66666665443333 344445554 789999999988654
No 240
>PLN03140 ABC transporter G family member; Provisional
Probab=72.15 E-value=6.6 Score=49.98 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=37.1
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH--HHHHh
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS--VARRL 428 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e--L~~l~ 428 (577)
+++...........|+++|| --.|=++.- ......++..|.+.+..+|++||..+ +.+++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDE--------PTsgLD~~~-a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~ 1087 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDE--------PTSGLDARA-AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1087 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeC--------CCCCCCHHH-HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhC
Confidence 34443445566778999999 555555433 22333444555656889999999975 34544
No 241
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.14 E-value=7.5 Score=39.97 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=36.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+.......|+|+|| --.|-++.- ....+.++..|.+.+..+|++||+.+....
T Consensus 148 aral~~~p~lllLDE--------Pt~gLD~~~-~~~l~~~l~~l~~~g~til~~tH~~~~~~~ 201 (274)
T PRK13644 148 AGILTMEPECLIFDE--------VTSMLDPDS-GIAVLERIKKLHEKGKTIVYITHNLEELHD 201 (274)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHH-HHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence 344556778999999 555555533 234444555565558899999999887643
No 242
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.97 E-value=0.88 Score=53.96 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=34.7
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccCcccc-cCcc-cccccccccc
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMS-ELLKYFENAF 293 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~~Grh-PlLe-~~l~~~~n~F 293 (577)
.+..++|+|++||||+||+++..+++.+.|.+ |.-. ..+.+|...|
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~ 370 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF 370 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee
Confidence 56788999999999999999998889999965 5433 2344444444
No 243
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=71.96 E-value=4 Score=45.84 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=50.6
Q ss_pred hhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhhc
Q psy13263 356 VLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 356 ~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~~ 430 (577)
..|+++++.....+..--|-|||| ---=-+.++.+..|.+|=....+.+...|+.-|+.-+.++...
T Consensus 458 GGELQRvaIaa~L~reADlYllDE--------PSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsD 524 (591)
T COG1245 458 GGELQRVAIAAALSREADLYLLDE--------PSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSD 524 (591)
T ss_pred chhHHHHHHHHHhccccCEEEecC--------chhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhc
Confidence 457887776666666778999999 4444456678888887777666778999999999988887653
No 244
>PRK12377 putative replication protein; Provisional
Probab=71.91 E-value=15 Score=37.89 Aligned_cols=100 Identities=5% Similarity=-0.126 Sum_probs=61.5
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhh-------HHhhhcCCCce
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSK-------YASKAKSNHQR 373 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~-------~~il~~a~~~s 373 (577)
.++.||...|||.....++.-. . +-|.. .+|+.+.. +..++... ..++.....-.
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l--~-~~g~~-----------v~~i~~~~----l~~~l~~~~~~~~~~~~~l~~l~~~d 165 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRL--L-AKGRS-----------VIVVTVPD----VMSRLHESYDNGQSGEKFLQELCKVD 165 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--H-HcCCC-----------eEEEEHHH----HHHHHHHHHhccchHHHHHHHhcCCC
Confidence 4577999999999998877543 2 21221 13332221 22222211 12233344567
Q ss_pred EEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch--HHHHH
Q psy13263 374 VATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY--HSVAR 426 (577)
Q Consensus 374 LVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy--~eL~~ 426 (577)
|++||+ ||.-..+.....+...|+++-...+.-+||||-+ .+|.+
T Consensus 166 LLiIDD--------lg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~ 212 (248)
T PRK12377 166 LLVLDE--------IGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST 212 (248)
T ss_pred EEEEcC--------CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHH
Confidence 999999 9876666667778888888877766778889886 44444
No 245
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=71.83 E-value=7.4 Score=38.67 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=37.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
++.-.+.......++|+|| --.|-++..-..+. .++..+.+.+..+|++||..++...
T Consensus 152 rl~la~al~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDE--------IDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLLNY 209 (243)
T ss_pred HHHHHHHHhcCCCEEEecC--------CcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHHHh
Confidence 3333344456678999999 55666554433333 4444455557889999999887764
No 246
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=71.78 E-value=7.5 Score=39.52 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=34.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l 427 (577)
.+.......|+|+|| --.|-++.--. ..+.++..+.+ .++.+|++||+.+....
T Consensus 140 aral~~~p~lllLDE--------Pt~~LD~~~~~-~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 140 ARALAANPQLLLLDE--------PFGALDAFTRE-QMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred HHHHhcCCCEEEEeC--------CCccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 344455678999999 55565554333 33344445544 37889999999876543
No 247
>CHL00181 cbbX CbbX; Provisional
Probab=71.77 E-value=12 Score=39.17 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=56.4
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchh-hhHHhhhcCCCceEEeecc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVP-SKYASKAKSNHQRVATKKK 379 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~-e~~~il~~a~~~sLVLlDE 379 (577)
.+++||...|||..-+.++.+. ..+| +++.. ..+++....-.+.|..+.. ....++..+ ...+++|||
T Consensus 62 ill~G~pGtGKT~lAr~la~~~---~~~g-~~~~~------~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE 130 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADIL---YKLG-YIKKG------HLLTVTRDDLVGQYIGHTAPKTKEVLKKA-MGGVLFIDE 130 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---HHcC-CCCCC------ceEEecHHHHHHHHhccchHHHHHHHHHc-cCCEEEEEc
Confidence 4578999999999999998764 2333 22111 0111110000011221111 122233333 347999999
Q ss_pred cCccccccccc---CCCCc-chhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhcCCCc
Q psy13263 380 NVENYVTPECR---GTGTN-DGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLREEPNV 434 (577)
Q Consensus 380 tg~n~v~~LGR---GTst~-DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~~~~V 434 (577)
+++ ..+.. -|..+...++..+-.. ++.+|++|.-..+..+....|.+
T Consensus 131 --------~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L 183 (287)
T CHL00181 131 --------AYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGL 183 (287)
T ss_pred --------cchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHH
Confidence 653 21111 1333333344444333 57888998766665555444443
No 248
>KOG0743|consensus
Probab=71.60 E-value=22 Score=39.77 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=69.0
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecccccchhhhhchhhhHHhhhcCCCceEEeeccc
Q psy13263 302 GNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEt 380 (577)
++.||-..|||.+..++|-- |+ +-+ |.-.+.++. -.| +...|.....+|++||-..
T Consensus 239 LLYGPPGTGKSS~IaAmAn~------L~---------ydIydLeLt~v~~-----n~d---Lr~LL~~t~~kSIivIEDI 295 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANY------LN---------YDIYDLELTEVKL-----DSD---LRHLLLATPNKSILLIEDI 295 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhh------cC---------CceEEeeeccccC-----cHH---HHHHHHhCCCCcEEEEeec
Confidence 36799999999998766531 11 111 222222222 122 4455667778899888430
Q ss_pred CcccccccccCCC---Ccch--hhHHH-HHHHHHHhc--CC----eEEEecchHHHHHHhhcCCCcccccceeeeecCCC
Q psy13263 381 VENYVTPECRGTG---TNDG--CVIAR-VTLEKFLQI--GC----LTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448 (577)
Q Consensus 381 g~n~v~~LGRGTs---t~DG--~ALA~-AIlE~L~~~--~~----~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~ 448 (577)
--++. -=+|... ..+| .-+.. ++|.+|-.. .| .+||||-|.|=.+-+-..| ..|.
T Consensus 296 Dcs~~-l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRp----GRmD-------- 362 (457)
T KOG0743|consen 296 DCSFD-LRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRP----GRMD-------- 362 (457)
T ss_pred ccccc-cccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCC----Ccce--------
Confidence 00000 0022332 2332 11222 344444332 34 7789999987655443333 3343
Q ss_pred CcceEEEEEeecCCCCC-CcHHHHHHHHcCCCH
Q psy13263 449 GIDTIVFLYKLVPGICP-KSFGFNVAELAGIPE 480 (577)
Q Consensus 449 ~~~~l~flYkL~~G~~~-~SyGi~vArlaGlP~ 480 (577)
+++.-|-|. ..|=.-....+|++.
T Consensus 363 --------mhI~mgyCtf~~fK~La~nYL~~~~ 387 (457)
T KOG0743|consen 363 --------MHIYMGYCTFEAFKTLASNYLGIEE 387 (457)
T ss_pred --------eEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 333346664 355555667889965
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=71.60 E-value=10 Score=40.61 Aligned_cols=97 Identities=8% Similarity=-0.138 Sum_probs=60.6
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhh--------HHhhhcCC
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSK--------YASKAKSN 370 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~--------~~il~~a~ 370 (577)
....+.||...|||.....++.-. +.+ |. ..+|+.... |..++... ...+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~-g~-----------~V~y~t~~~----l~~~l~~~~~~~~~~~~~~~~~l~ 245 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDR-GK-----------SVIYRTADE----LIEILREIRFNNDKELEEVYDLLI 245 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHC-CC-----------eEEEEEHHH----HHHHHHHHHhccchhHHHHHHHhc
Confidence 345577999999999887776532 221 21 234443322 22222110 00011112
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
.--|++||+ ||.--.+.........|+.+....+..+||||-+
T Consensus 246 ~~DLLIIDD--------lG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 246 NCDLLIIDD--------LGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cCCEEEEec--------cCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 225889999 9998878788888888998888877889999987
No 250
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=70.97 E-value=7.9 Score=39.45 Aligned_cols=60 Identities=8% Similarity=0.023 Sum_probs=37.8
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHH-HHhh
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVA-RRLR 429 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~-~l~~ 429 (577)
++.-.+.......|+|+|| --.|-++..-..+... +..+.+. +..+|++||+.+.. ++..
T Consensus 151 rv~laral~~~p~llllDE--------Pt~gLD~~~~~~l~~~-L~~l~~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDE--------PTTWLDISHQIDLLEL-LSELNREKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred HHHHHHHHhcCCCEEEEeC--------ccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 3333344456778999999 6666665544444433 3445553 78899999998754 4443
No 251
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=70.95 E-value=8.2 Score=38.79 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=36.5
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l 427 (577)
++.-.+......-++|+|| --.|-++.--..+... +..+.+ .+..+|++||..+....
T Consensus 156 rv~laral~~~p~vlllDE--------P~~~LD~~~~~~l~~~-l~~~~~~~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDE--------PTGGLDVSVQARLLDL-LRGLVRDLGLAVIIVTHDLGVARL 214 (253)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3333444566778999999 6555555444333333 334444 37899999999887653
No 252
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=70.74 E-value=8.2 Score=39.49 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=33.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.--.. ...++..+.+ .+..+|++||+.+...
T Consensus 145 araL~~~p~lllLDE--------Pt~~LD~~~~~~-l~~~L~~~~~~~~~tviivsHd~~~~~ 198 (257)
T PRK11247 145 ARALIHRPGLLLLDE--------PLGALDALTRIE-MQDLIESLWQQHGFTVLLVTHDVSEAV 198 (257)
T ss_pred HHHHhcCCCEEEEeC--------CCCCCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 344455678999999 555555543333 3334445444 3788999999987654
No 253
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=70.46 E-value=11 Score=35.38 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=31.1
Q ss_pred CceEEeecccCcccccccccCCCC--cchhhHHHHHHHHHHhcCCeEEEecchHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGT--NDGCVIARVTLEKFLQIGCLTVFATHYHSV 424 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst--~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL 424 (577)
...+++||+ +.-..+. .+.......++..|.+.++.+|+++|....
T Consensus 95 ~~~~lviD~--------~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 95 KAKRVVIDS--------VSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred CCCEEEEeC--------cHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 457999999 7766552 222233344566666668899999998765
No 254
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=70.42 E-value=6.1 Score=38.72 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=35.2
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+.......|+|+|| --.|-+...-..|...+.+ +.+ +..+|++||..++.++
T Consensus 152 a~al~~~p~llllDE--------Pt~~LD~~~~~~l~~~l~~-~~~-~~tii~~sH~~~~~~~ 204 (220)
T cd03245 152 ARALLNDPPILLLDE--------PTSAMDMNSEERLKERLRQ-LLG-DKTLIIITHRPSLLDL 204 (220)
T ss_pred HHHHhcCCCEEEEeC--------ccccCCHHHHHHHHHHHHH-hcC-CCEEEEEeCCHHHHHh
Confidence 334455668999999 7777776655544444443 333 3688999999987643
No 255
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=70.40 E-value=15 Score=43.39 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=37.2
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhh
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~ 429 (577)
-....++|+|| .||.-|-..= ..|++.|.+. ++.+|++||-+...+.+.
T Consensus 625 l~~P~ILlLDE-----------aTSaLD~~sE-~~I~~~L~~~~~~~T~I~IaHRl~ti~~ad 675 (709)
T COG2274 625 LSKPKILLLDE-----------ATSALDPETE-AIILQNLLQILQGRTVIIIAHRLSTIRSAD 675 (709)
T ss_pred ccCCCEEEEeC-----------cccccCHhHH-HHHHHHHHHHhcCCeEEEEEccchHhhhcc
Confidence 34678999999 7888885433 3466777776 699999999998877654
No 256
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=70.09 E-value=9.1 Score=38.27 Aligned_cols=56 Identities=20% Similarity=0.070 Sum_probs=36.8
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.-.+.......++|+|| --.|-+..-- ...+.+++.+.+. ++.+|++||..+...
T Consensus 139 l~laral~~~p~llllDE--------P~~~LD~~~~-~~~~~~l~~~~~~~~~tvli~sH~~~~~~ 195 (237)
T TIGR00968 139 VALARALAVEPQVLLLDE--------PFGALDAKVR-KELRSWLRKLHDEVHVTTVFVTHDQEEAM 195 (237)
T ss_pred HHHHHHHhcCCCEEEEcC--------CcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 333344455678999999 6666665433 3344455556655 789999999988643
No 257
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=70.03 E-value=8.9 Score=38.76 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=35.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++... ...+.+++.+.+. +..+|++||..+...
T Consensus 152 aral~~~p~lLlLDE--------Pt~~LD~~~~-~~l~~~L~~~~~~~g~til~~sH~~~~~~ 205 (254)
T PRK10418 152 ALALLCEAPFIIADE--------PTTDLDVVAQ-ARILDLLESIVQKRALGMLLVTHDMGVVA 205 (254)
T ss_pred HHHHhcCCCEEEEeC--------CCcccCHHHH-HHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 344456668999999 6666665433 3344555556554 789999999987654
No 258
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=69.93 E-value=8.6 Score=38.68 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=33.7
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
........++|+|| --.|-++..-. ..+.++..+.+. +..+|++||+.+...
T Consensus 159 ral~~~p~llllDE--------P~~~LD~~~~~-~l~~~l~~~~~~~~~tiiivsH~~~~~~ 211 (252)
T TIGR03005 159 RALAMRPKVMLFDE--------VTSALDPELVG-EVLNVIRRLASEHDLTMLLVTHEMGFAR 211 (252)
T ss_pred HHHHcCCCEEEEeC--------CcccCCHHHHH-HHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 34455668999999 55555554332 333445555554 789999999987653
No 259
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=69.66 E-value=8.6 Score=39.34 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=37.4
Q ss_pred hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 359 VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 359 m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
...+...+.......++|+|| --.|-++.- ......+++.+.+. +..+|++||+.+...
T Consensus 157 ~qrl~laral~~~p~lllLDE--------Pt~~LD~~~-~~~~~~~l~~~~~~~~~tiiivsH~~~~i~ 216 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDE--------AVSNLDLVL-QAGVIRLLKKLQQQFGTACLFITHDLRLVE 216 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeC--------CCcccCHHH-HHHHHHHHHHHHHHcCcEEEEEECCHHHHH
Confidence 333433444556778999999 444444432 22344555566654 789999999988765
No 260
>PRK08939 primosomal protein DnaI; Reviewed
Probab=69.46 E-value=16 Score=38.70 Aligned_cols=102 Identities=8% Similarity=-0.070 Sum_probs=61.4
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhh------HHhhhcCCCceE
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSK------YASKAKSNHQRV 374 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~------~~il~~a~~~sL 374 (577)
..+.||-..|||.....++.-. .+-|. ...|+.+ ..|..++... ...+.....--|
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l---~~~g~-----------~v~~~~~----~~l~~~lk~~~~~~~~~~~l~~l~~~dl 220 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANEL---AKKGV-----------SSTLLHF----PEFIRELKNSISDGSVKEKIDAVKEAPV 220 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---HHcCC-----------CEEEEEH----HHHHHHHHHHHhcCcHHHHHHHhcCCCE
Confidence 3477899999999988776432 22231 1122222 2244444332 112222335578
Q ss_pred EeecccCcccccccccCCCCcchh-hHHHHHHHHHHhcCCeEEEecch--HHHHHHh
Q psy13263 375 ATKKKNVENYVTPECRGTGTNDGC-VIARVTLEKFLQIGCLTVFATHY--HSVARRL 428 (577)
Q Consensus 375 VLlDEtg~n~v~~LGRGTst~DG~-ALA~AIlE~L~~~~~~~lfaTHy--~eL~~l~ 428 (577)
++||+ ||....+..+. -|...|+++-...+-.|||||-+ -+|.+.+
T Consensus 221 LiIDD--------iG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 221 LMLDD--------IGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred EEEec--------CCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 89999 99887766655 46677777776667789999987 4454443
No 261
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=69.34 E-value=9.3 Score=37.98 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=34.6
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.....+.. ++..+.+.+..+|++||..+...
T Consensus 154 aral~~~p~llllDE--------P~~gLD~~~~~~~~~-~l~~~~~~~~tiii~sH~~~~~~ 206 (224)
T cd03220 154 AIATALEPDILLIDE--------VLAVGDAAFQEKCQR-RLRELLKQGKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHhcCCCEEEEeC--------CcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHH
Confidence 344455678999999 666666554444443 33444444678999999987654
No 262
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.22 E-value=9.6 Score=37.90 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=37.7
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.-.+.......++|+|| --.|-+..-...+. .++..+.+. ++.+|++||..+...
T Consensus 138 rl~laral~~~p~llllDE--------P~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sh~~~~~~ 195 (232)
T cd03300 138 RVAIARALVNEPKVLLLDE--------PLGALDLKLRKDMQ-LELKRLQKELGITFVFVTHDQEEAL 195 (232)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3333444566778999999 66666665544443 344455554 889999999987653
No 263
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=69.21 E-value=6.1 Score=39.94 Aligned_cols=50 Identities=2% Similarity=-0.127 Sum_probs=36.0
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
...++|+|| .-.|-++..-..+.. ++..+.+.+..+|++||..++..++.
T Consensus 177 ~p~~lllDE--------Pt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 177 PAPFFVLDE--------VDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred CCCEEEEec--------ccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCC
Confidence 457999999 777777766555554 44445554789999999988876543
No 264
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=68.97 E-value=8.6 Score=39.63 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=37.3
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|-++.....|. .++..|.+. ++.+|++||+.+...
T Consensus 157 ral~~~p~llllDE--------Pt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 157 GILAMRPECIIFDE--------PTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAV 209 (280)
T ss_pred HHHHcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHh
Confidence 34456678999999 77777766655554 455566554 889999999998765
No 265
>PTZ00293 thymidine kinase; Provisional
Probab=68.89 E-value=13 Score=37.64 Aligned_cols=135 Identities=10% Similarity=-0.009 Sum_probs=70.6
Q ss_pred ccccCCCCCCCch-hHHHHHHHHHHHHH--hcccccccccee-ccceeeecccccchhhhhchhhhHHhhhcCCCceEEe
Q psy13263 301 AGNIIPKAGVDKE-YDEVMDEIKSIEKE--IQTYLRTQCAHF-GCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVAT 376 (577)
Q Consensus 301 ~~I~gPN~gGKsv-y~k~valI~~imaq--ig~~VpA~~a~l-~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVL 376 (577)
.+|+||=.+|||. .++.+..-. .+. .-.+-|+...++ +-+.|-++.|. +.....+..+..+......--.|+
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~--~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~--~~~a~~v~~~~e~~~~~~~~dvI~ 82 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFT--YSEKKCVVIKYSKDTRYSDEQNISSHDKQ--MLKAIKVSKLKEVLETAKNYDVIA 82 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHH--HcCCceEEEEecccccCCCCCcEEecCCC--cceeEEcCCHHHHHHhccCCCEEE
Confidence 3578999999987 555544322 121 222335544444 32334445554 222222223223322222336799
Q ss_pred ecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch-----------HHHHHHhhcCCCcccccceeeeec
Q psy13263 377 KKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY-----------HSVARRLREEPNVAFEYMSYIEDK 445 (577)
Q Consensus 377 lDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy-----------~eL~~l~~~~~~V~n~hm~~~~~~ 445 (577)
||| .=--+ + -+.+++.|...+-.||++... ..|..++...-.+...++.+-
T Consensus 83 IDE--------aQFf~---~----i~~~~~~l~~~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~kl~aiC~~CG--- 144 (211)
T PTZ00293 83 IDE--------GQFFP---D----LVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVCMFCG--- 144 (211)
T ss_pred EEc--------hHhhH---h----HHHHHHHHHHCCCeEEEEecCcccccCcCccHHHHHHhhCEEEEcceEchhhC---
Confidence 999 22112 1 445677778789999999988 555555554333333333332
Q ss_pred CCCCcceEEEEEeecCC
Q psy13263 446 RNDGIDTIVFLYKLVPG 462 (577)
Q Consensus 446 ~~~~~~~l~flYkL~~G 462 (577)
..-+|++|+..|
T Consensus 145 -----~~A~~t~R~~~~ 156 (211)
T PTZ00293 145 -----KEASFSKRIVQS 156 (211)
T ss_pred -----CcceeEEEEcCC
Confidence 134677777654
No 266
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=68.87 E-value=9.8 Score=38.89 Aligned_cols=52 Identities=10% Similarity=0.007 Sum_probs=33.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|=++.-- .....++..+.+. +..+|++||+.+...
T Consensus 156 ral~~~p~lllLDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 156 RAIALEPDLIMFDE--------PFVGQDPITM-GVLVKLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred HHHhcCCCEEEEcC--------CCccCCHHHH-HHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 34455668999999 5555555333 2333444555554 789999999976544
No 267
>PRK05642 DNA replication initiation factor; Validated
Probab=68.69 E-value=16 Score=36.88 Aligned_cols=92 Identities=8% Similarity=-0.127 Sum_probs=53.8
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccC
Q psy13263 302 GNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNV 381 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg 381 (577)
.+.||...|||...+.++.-. . +-| ...+|....+ |..........+... -+++||+
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~--~-~~~-----------~~v~y~~~~~----~~~~~~~~~~~~~~~---d~LiiDD-- 105 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRF--E-QRG-----------EPAVYLPLAE----LLDRGPELLDNLEQY---ELVCLDD-- 105 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHH--H-hCC-----------CcEEEeeHHH----HHhhhHHHHHhhhhC---CEEEEec--
Confidence 477999999999988876421 1 111 1234544433 332222222112212 3788999
Q ss_pred cccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 382 ENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 382 ~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
++.-....+.......++..+.+.+..+|+++...
T Consensus 106 ------i~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 106 ------LDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred ------hhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 87654433434456667778877788889888753
No 268
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=68.64 E-value=11 Score=38.21 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=35.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
........|+|+|| --.|-++..-. ....++..+.+.+..+|++||..+...
T Consensus 150 ~al~~~p~llllDE--------Pt~~LD~~~~~-~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 150 RALAQEPKLLLLDE--------PTNHLDVRAQL-ETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred HHHhcCCCEEEEcC--------ccccCCHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34455678999999 66666654433 334445556555788999999988764
No 269
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=68.63 E-value=5.6 Score=33.92 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=17.1
Q ss_pred ccccCCCCCCCchhHHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI 321 (577)
.+++||+..|||...+.++..
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 468899999999999877553
No 270
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=68.60 E-value=10 Score=38.83 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=34.7
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.--.. ...++..+.+.+..+|++||+.+...
T Consensus 148 araL~~~p~lllLDE--------Pt~~LD~~~~~~-l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 148 AGALVLQARYLLLDE--------PTAGLDPAGRTQ-MIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHHHH-HHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 344556778999999 555555433332 33445555555778999999988764
No 271
>PRK04296 thymidine kinase; Provisional
Probab=68.42 E-value=15 Score=35.78 Aligned_cols=71 Identities=6% Similarity=-0.086 Sum_probs=41.4
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch-----------HHHHHHhhcCCCcccccc
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY-----------HSVARRLREEPNVAFEYM 439 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy-----------~eL~~l~~~~~~V~n~hm 439 (577)
..-+|+||| ++. -+.+ -...+++.|...+..++++.+. .+|..++...-.++..+|
T Consensus 78 ~~dvviIDE--------aq~--l~~~---~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~ 144 (190)
T PRK04296 78 KIDCVLIDE--------AQF--LDKE---QVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICV 144 (190)
T ss_pred CCCEEEEEc--------ccc--CCHH---HHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEcc
Confidence 446899999 743 1111 1245677777779999999988 344444433223333344
Q ss_pred eeeeecCCCCcceEEEEEeecCC
Q psy13263 440 SYIEDKRNDGIDTIVFLYKLVPG 462 (577)
Q Consensus 440 ~~~~~~~~~~~~~l~flYkL~~G 462 (577)
.+- ..-.|++|+..|
T Consensus 145 ~Cg--------~~a~~~~r~~~~ 159 (190)
T PRK04296 145 HCG--------RKATMNQRLIDG 159 (190)
T ss_pred ccC--------CccceEEEEeCC
Confidence 333 234788888843
No 272
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.80 E-value=9.9 Score=38.24 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=37.4
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
.+.-.+.......++|+|| --.|-++.....+.. ++..+. .++.+|++||+.+....+
T Consensus 155 rv~laral~~~p~lllLDE--------Pt~~LD~~~~~~l~~-~l~~~~-~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDE--------PCSALDPVSTMRIEE-LMQELK-QNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CCccCCHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHhh
Confidence 3333444556779999999 666666555544433 444443 378999999998776643
No 273
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=67.77 E-value=8.5 Score=37.26 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=34.9
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
..+.-.+......-++|+|| --.|-+.... ...+.++..+.+.+..+|++||.+
T Consensus 134 qrv~la~al~~~p~llllDE--------Pt~~LD~~~~-~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDE--------PTTALDKAGV-ALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeC--------CCcCCCHHHH-HHHHHHHHHHHhCCCEEEEEEccc
Confidence 33433444556778999999 6666666533 333444444555577899999987
No 274
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.73 E-value=8.8 Score=37.97 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=36.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+..+....++|+|| --.|-++..-..+ ..++..+.+ +..+|++||..+....
T Consensus 150 a~al~~~p~lllLDE--------P~~~LD~~~~~~l-~~~l~~~~~-~~tii~~sh~~~~~~~ 202 (234)
T cd03251 150 ARALLKDPPILILDE--------ATSALDTESERLV-QAALERLMK-NRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHhcCCCEEEEeC--------ccccCCHHHHHHH-HHHHHHhcC-CCEEEEEecCHHHHhh
Confidence 344455667999999 7777777665544 334444443 7789999999987754
No 275
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=67.51 E-value=11 Score=37.15 Aligned_cols=53 Identities=6% Similarity=-0.065 Sum_probs=34.1
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHh
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRL 428 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~ 428 (577)
......++|+|| .-.|-++..-..-..-++..+.+. +..+|++||.+++...+
T Consensus 136 l~~~p~illlDE--------P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 136 FGSNCGILALDE--------PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hccCCCEEEEcC--------CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 345678999999 666665554331233344455544 66899999998876543
No 276
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=66.78 E-value=13 Score=37.11 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=33.0
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.++|+|| --.|-++..-..+... +..+.+.+..+|++||+.++..+
T Consensus 159 ~llllDE--------Pt~gLD~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~ 204 (226)
T cd03270 159 VLYVLDE--------PSIGLHPRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRA 204 (226)
T ss_pred CEEEEeC--------CccCCCHHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHh
Confidence 6999999 7777777665444444 34455557889999999987653
No 277
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=66.63 E-value=10 Score=40.26 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=33.5
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
+...+..+....|+|+|| --.|-+..--..|. .++..|.+. +..+||+||+..+...
T Consensus 163 v~iArAL~~~P~lLilDE--------Pts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~ 220 (327)
T PRK11308 163 IAIARALMLDPDVVVADE--------PVSALDVSVQAQVL-NLMMDLQQELGLSYVFISHDLSVVEH 220 (327)
T ss_pred HHHHHHHHcCCCEEEEEC--------CCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 333344555668999999 43333332222222 233334443 7899999999988764
No 278
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.58 E-value=10 Score=40.17 Aligned_cols=60 Identities=5% Similarity=-0.104 Sum_probs=38.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH-HHhh
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA-RRLR 429 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~-~l~~ 429 (577)
+++..+..+....++|+|| --.|-++..-..+. .++..+..++..+|++||..+.. .++.
T Consensus 184 RvaiAraL~~~p~iLLLDE--------PtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 184 RVAIAGILAIQPEILIFDE--------PTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred HHHHHHHHHcCCCEEEEEC--------CccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 3333344566778999999 66666555443333 34444555578999999998854 4443
No 279
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.40 E-value=9.7 Score=38.89 Aligned_cols=53 Identities=11% Similarity=-0.027 Sum_probs=36.2
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++..-..|... +..+.+. +..+|++||..+...
T Consensus 154 aral~~~p~lllLDE--------Pt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 154 AGVLALNPSVIILDE--------ATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAM 207 (269)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHh
Confidence 344455678999999 7777766655544443 4445544 788999999987654
No 280
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=66.39 E-value=6.3 Score=38.27 Aligned_cols=41 Identities=2% Similarity=-0.104 Sum_probs=30.5
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
-|++||+ ||....+..+..+.+-|+.+-.+++ .+||||.+.
T Consensus 110 dlLilDD--------lG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDD--------LGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEET--------CTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccc--------cceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 6778999 9998888888888888888887754 688899874
No 281
>PF13173 AAA_14: AAA domain
Probab=66.35 E-value=20 Score=32.37 Aligned_cols=91 Identities=4% Similarity=-0.112 Sum_probs=53.3
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecccccchhhhh----chhhhHHhhhcCCCceEE
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVL----EVPSKYASKAKSNHQRVA 375 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG~~qStF~~----Em~e~~~il~~a~~~sLV 375 (577)
.+|+||-..|||+.+++++.=. . .- ..+|.+..+ -.+.. ++.+...-. ......+|
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~--~--------------~~~~~~yi~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~i 65 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDL--L--------------PPENILYINFDD--PRDRRLADPDLLEYFLEL-IKPGKKYI 65 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--c--------------ccccceeeccCC--HHHHHHhhhhhHHHHHHh-hccCCcEE
Confidence 4688999999999998875321 1 01 234444333 11111 111211111 12367999
Q ss_pred eecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHH
Q psy13263 376 TKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVA 425 (577)
Q Consensus 376 LlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~ 425 (577)
+||| +-+ +.=++..+.+|.+. ++.+++|+....+.
T Consensus 66 ~iDE--------iq~-------~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 66 FIDE--------IQY-------LPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred EEeh--------hhh-------hccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 9999 432 23456677888877 47999999876555
No 282
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=66.25 E-value=9 Score=42.76 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=20.9
Q ss_pred hhhhhccccCccCCcchhhhhhhhh
Q psy13263 247 LACSYMKESGCTGESTLLTQLCNYE 271 (577)
Q Consensus 247 Ldl~~mkGsn~~GKStlLk~i~~~~ 271 (577)
-+++++.|.+..||||||+.+...+
T Consensus 244 ~GvTlIvGGGyHGKSTLL~Ale~GV 268 (448)
T PF09818_consen 244 KGVTLIVGGGYHGKSTLLEALERGV 268 (448)
T ss_pred CcEEEEECCCCccHHHHHHHHHhcc
Confidence 3688999999999999999876543
No 283
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=66.16 E-value=11 Score=38.63 Aligned_cols=53 Identities=8% Similarity=0.018 Sum_probs=34.6
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+......-++|+|| --.|-++.- ....+.++..+.+. +..+|++||..+...
T Consensus 161 aral~~~p~lllLDE--------Pt~~LD~~~-~~~l~~~l~~~~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 161 ARALILRPKVIIADE--------ALASLDMSM-RSQLINLMLELQEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHHHHhCCCEEEEcC--------CcccCCHHH-HHHHHHHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 344455678999999 666666533 23333444455544 788999999987665
No 284
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=66.16 E-value=9.6 Score=37.09 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=34.0
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS 423 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e 423 (577)
+...+.......++|+|| --.|=++..-..+.. ++..+.+.++.+|++||+..
T Consensus 134 l~laral~~~p~llllDE--------Pt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 134 VALARLLLSGRPLWILDE--------PTTALDKAGVARFAE-AMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHHHhcCCCEEEEeC--------CCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCch
Confidence 333344455668999999 666766655444433 33344445788999999754
No 285
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.15 E-value=11 Score=38.86 Aligned_cols=59 Identities=8% Similarity=-0.051 Sum_probs=40.1
Q ss_pred hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 359 VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 359 m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
..++.-....+....|+|+|| --.|-++. .......++..+.+. +..+|++||..+...
T Consensus 146 ~qrv~lAral~~~p~lLlLDE--------Pt~~LD~~-~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 146 KQRVAIAGAVAMRPKIIILDE--------ATSMLDPE-GRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEEC--------CcccCCHH-HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 334443444566778999999 66666664 334445566666665 889999999988764
No 286
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=65.93 E-value=13 Score=36.71 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=32.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.--.. .+.++..+.+. ..+|++||+.+...
T Consensus 154 ~al~~~p~llllDE--------Pt~~LD~~~~~~-l~~~l~~~~~~-~tii~~sH~~~~~~ 204 (227)
T cd03260 154 RALANEPEVLLLDE--------PTSALDPISTAK-IEELIAELKKE-YTIVIVTHNMQQAA 204 (227)
T ss_pred HHHhcCCCEEEEeC--------CCccCCHHHHHH-HHHHHHHHhhC-cEEEEEeccHHHHH
Confidence 34455678999999 555555543332 33444444444 67899999987654
No 287
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=65.65 E-value=9.7 Score=41.13 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=31.4
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchh--hHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGC--VIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~--ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.+..+.......++|+|| -.|.-|.- ....+.+..|.++ +..+|.+||+..=+.
T Consensus 141 RVAlaRAlVr~P~v~L~DE-----------PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAm 198 (338)
T COG3839 141 RVALARALVRKPKVFLLDE-----------PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM 198 (338)
T ss_pred HHHHHHHHhcCCCEEEecC-----------chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHH
Confidence 3333333344557999999 22222210 1223345556666 899999999964444
No 288
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.57 E-value=11 Score=38.74 Aligned_cols=52 Identities=10% Similarity=-0.018 Sum_probs=37.7
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
..+....++|+|| --.|-++.....+.. ++..+.+. +..+|++||+.+....
T Consensus 154 aL~~~p~llllDE--------Pt~~LD~~~~~~l~~-~l~~l~~~~g~tiil~sH~~~~~~~ 206 (277)
T PRK13642 154 IIALRPEIIILDE--------STSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAAS 206 (277)
T ss_pred HHHcCCCEEEEeC--------CcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 3455667999999 777777766655554 44556654 8899999999988753
No 289
>PRK08084 DNA replication initiation factor; Provisional
Probab=65.55 E-value=21 Score=36.05 Aligned_cols=93 Identities=9% Similarity=-0.100 Sum_probs=53.1
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeeccc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEt 380 (577)
..++||...|||....+++.-. .+ -|. ..+|...... ..+..++.+ .+.. --+++|||
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~--~~-~~~-----------~v~y~~~~~~-~~~~~~~~~---~~~~---~dlliiDd- 105 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAEL--SQ-RGR-----------AVGYVPLDKR-AWFVPEVLE---GMEQ---LSLVCIDN- 105 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--Hh-CCC-----------eEEEEEHHHH-hhhhHHHHH---Hhhh---CCEEEEeC-
Confidence 3578999999999999877533 11 121 1233322220 112222222 1111 24889999
Q ss_pred CcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchH
Q psy13263 381 VENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYH 422 (577)
Q Consensus 381 g~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~ 422 (577)
+++-+...+......-++..+.+. ++.+|+||+..
T Consensus 106 -------i~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 106 -------IECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred -------hhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 988765554444445566666665 46888888743
No 290
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=65.44 E-value=12 Score=38.92 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=36.4
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
..|+|+|| --.|-++.+-..+. .++..|.+.+..+|++||+.++...
T Consensus 191 p~lllLDE--------PtsgLD~~~~~~l~-~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 191 KTLYILDE--------PTTGLHFHDVKKLL-EVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CcEEEEEC--------CCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 57999999 78888877755554 4556666668899999999987654
No 291
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=65.38 E-value=12 Score=38.29 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=34.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-++|+|| --.|-++.--..+. .++..+.+.+..+|++||..+...
T Consensus 155 raL~~~p~llllDE--------Pt~~LD~~~~~~l~-~~L~~~~~~g~tviivsH~~~~~~ 206 (272)
T PRK15056 155 RAIAQQGQVILLDE--------PFTGVDVKTEARII-SLLRELRDEGKTMLVSTHNLGSVT 206 (272)
T ss_pred HHHhcCCCEEEEeC--------CCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33455668999999 66666665554443 334445555788999999986543
No 292
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.36 E-value=13 Score=37.18 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=37.9
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......++++|| --.|-+...- ...+.++..+... ++.+|++||+.....
T Consensus 137 rl~laral~~~p~llllDE--------Pt~gLD~~~~-~~l~~~l~~~~~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 137 RVAIARALVVNPKILLLDE--------PFSALDVRTK-EKLREELKKIRKEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred HHHHHHHHHcCCCEEEECC--------CcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 3333344455668999999 6666666544 3444555566554 889999999987654
No 293
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=65.34 E-value=11 Score=41.06 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=38.2
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++-.+..+....|+|+|| --.|-+..-...|...+.+.+.+.+..+|++||+.+.+.
T Consensus 158 VaLARAL~~~P~lLLLDE--------P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 214 (377)
T PRK11607 158 VALARSLAKRPKLLLLDE--------PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAM 214 (377)
T ss_pred HHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 333445566778999999 666666655555544444444444889999999987654
No 294
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=65.32 E-value=11 Score=36.75 Aligned_cols=58 Identities=9% Similarity=0.008 Sum_probs=35.6
Q ss_pred hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 359 VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 359 m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..++...+.......++|+|| --.|-++..... .+.++..+. .+..+|++||..++..
T Consensus 131 ~qrv~laral~~~p~llllDE--------P~~~LD~~~~~~-l~~~l~~~~-~~~tiii~th~~~~~~ 188 (207)
T cd03369 131 RQLLCLARALLKRPRVLVLDE--------ATASIDYATDAL-IQKTIREEF-TNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHHHHHhhCCCEEEEeC--------CcccCCHHHHHH-HHHHHHHhc-CCCEEEEEeCCHHHHh
Confidence 334433444456778999999 655655544332 223333332 2778999999988764
No 295
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.12 E-value=11 Score=37.83 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=34.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|-++..-..+.. ++..+. .+..+|++||+.+...
T Consensus 163 ral~~~p~lllLDE--------Pt~~LD~~~~~~l~~-~l~~~~-~~~tvii~sH~~~~~~ 213 (254)
T PRK14273 163 RTLAIEPNVILMDE--------PTSALDPISTGKIEE-LIINLK-ESYTIIIVTHNMQQAG 213 (254)
T ss_pred HHHHcCCCEEEEeC--------CCcccCHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHH
Confidence 33445668999999 777777665554444 344444 3678899999988754
No 296
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.10 E-value=11 Score=37.24 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=35.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
........++|+|| --.|-++.....|.. ++..+. .+..+|++||..+....
T Consensus 152 ~al~~~p~llllDE--------P~~~LD~~~~~~l~~-~l~~~~-~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 152 RAMLRDPKILILDE--------ATSNIDTETEKLIQE-ALEKLM-KGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHhcCCCEEEEeC--------ccccCCHHHHHHHHH-HHHHhc-CCCEEEEEecCHHHHhh
Confidence 34456778999999 666766665544433 333443 37789999999987653
No 297
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.92 E-value=14 Score=37.12 Aligned_cols=56 Identities=11% Similarity=0.028 Sum_probs=35.7
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......++|+|| -..|-++.-- .....++..+.+ +..+|++||..+...
T Consensus 157 rv~laral~~~p~llllDE--------P~~~LD~~~~-~~l~~~l~~~~~-~~tiii~sH~~~~~~ 212 (253)
T PRK14267 157 RLVIARALAMKPKILLMDE--------PTANIDPVGT-AKIEELLFELKK-EYTIVLVTHSPAQAA 212 (253)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CCccCCHHHH-HHHHHHHHHHhh-CCEEEEEECCHHHHH
Confidence 3333344456778999999 6677766433 333344444544 578999999987644
No 298
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=64.75 E-value=11 Score=37.44 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=34.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+..+....++|+|| --.|-++..-..+ +.++..+. .++.+|++||..+...+
T Consensus 152 ~al~~~p~llllDE--------P~~gLD~~~~~~l-~~~l~~~~-~g~~vi~~sh~~~~~~~ 203 (238)
T cd03249 152 RALLRNPKILLLDE--------ATSALDAESEKLV-QEALDRAM-KGRTTIVIAHRLSTIRN 203 (238)
T ss_pred HHHhcCCCEEEEeC--------ccccCCHHHHHHH-HHHHHHhc-CCCEEEEEeCCHHHHhh
Confidence 33455668999999 6666665544333 33334444 47789999999887763
No 299
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=64.73 E-value=12 Score=39.71 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=35.5
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHh
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRL 428 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~ 428 (577)
++...+.......|+|+|| --.|=++.-... ...++..|.+. +..+||+||+.++....
T Consensus 166 Rv~iArAL~~~P~llilDE--------Pts~LD~~~~~~-i~~lL~~l~~~~g~tii~itHdl~~v~~~ 225 (330)
T PRK15093 166 KVMIAIALANQPRLLIADE--------PTNAMEPTTQAQ-IFRLLTRLNQNNNTTILLISHDLQMLSQW 225 (330)
T ss_pred HHHHHHHHHCCCCEEEEeC--------CCCcCCHHHHHH-HHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 3333445566778999999 444444322222 22233344443 78999999999888643
No 300
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.57 E-value=12 Score=37.55 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=34.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+..+....++|+|| --.|-++.--..+. .++..+. .++.+|++||..+...
T Consensus 158 aral~~~p~lllLDE--------Pt~~LD~~~~~~l~-~~l~~~~-~~~tiiivtH~~~~~~ 209 (250)
T PRK14245 158 ARAMAVSPSVLLMDE--------PASALDPISTAKVE-ELIHELK-KDYTIVIVTHNMQQAA 209 (250)
T ss_pred HHHHhcCCCEEEEeC--------CCccCCHHHHHHHH-HHHHHHh-cCCeEEEEeCCHHHHH
Confidence 344456678999999 66666655444443 3333443 3688999999987653
No 301
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.26 E-value=14 Score=37.18 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=34.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.--.. ...++..+. ++..+|++||..+...
T Consensus 161 aral~~~p~llllDE--------Pt~~LD~~~~~~-l~~~l~~~~-~~~tiiiisH~~~~~~ 212 (251)
T PRK14244 161 ARAIAVKPTMLLMDE--------PCSALDPVATNV-IENLIQELK-KNFTIIVVTHSMKQAK 212 (251)
T ss_pred HHHHhcCCCEEEEeC--------CCccCCHHHHHH-HHHHHHHHh-cCCeEEEEeCCHHHHH
Confidence 344455668999999 666666643333 334444443 3788999999988654
No 302
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=64.20 E-value=12 Score=36.86 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=34.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+.......++|+|| --.|-++..-..+...+.+ +.+ +..+|++||.+++...
T Consensus 162 aral~~~p~llllDE--------Pt~~LD~~~~~~l~~~l~~-~~~-~~tii~~sh~~~~~~~ 214 (226)
T cd03248 162 ARALIRNPQVLILDE--------ATSALDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVER 214 (226)
T ss_pred HHHHhcCCCEEEEeC--------CcccCCHHHHHHHHHHHHH-HcC-CCEEEEEECCHHHHHh
Confidence 344456778999999 6666665544433333333 333 5788999999988754
No 303
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=64.11 E-value=13 Score=39.86 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=35.1
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+..+....++|+|| --.|-++.-- ...+.++..+.+. +..+|++||+.+...
T Consensus 152 AraL~~~p~iLlLDE--------Pts~LD~~~~-~~l~~~L~~l~~~~g~tiilvtH~~~~i~ 205 (343)
T PRK11153 152 ARALASNPKVLLCDE--------ATSALDPATT-RSILELLKDINRELGLTIVLITHEMDVVK 205 (343)
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 344556678999999 5555555433 3334445555554 789999999988655
No 304
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=64.01 E-value=44 Score=35.72 Aligned_cols=21 Identities=10% Similarity=-0.194 Sum_probs=17.1
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
...|+||...|||...+.+..
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999887754
No 305
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.91 E-value=14 Score=37.52 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=32.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.--. ....++..|... +..+|++||+.+...
T Consensus 163 ral~~~p~vllLDE--------P~~~LD~~~~~-~l~~~l~~l~~~~~~tiiivsH~~~~i~ 215 (261)
T PRK14258 163 RALAVKPKVLLMDE--------PCFGLDPIASM-KVESLIQSLRLRSELTMVIVSHNLHQVS 215 (261)
T ss_pred HHHhcCCCEEEEeC--------CCccCCHHHHH-HHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 34456678999999 55555544332 233334444433 788999999987655
No 306
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=63.71 E-value=12 Score=40.43 Aligned_cols=57 Identities=9% Similarity=0.066 Sum_probs=35.6
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++-.+..+....|+|+|| --.|=++.-...+. .++..+... +..+|++||+.+...
T Consensus 141 RvaLAraL~~~P~lLLLDE--------Pts~LD~~~~~~l~-~~L~~l~~~~g~tvI~vTHd~~~~~ 198 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDE--------PLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAM 198 (369)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHHHhCCEEEEEeCCHHHHH
Confidence 3333444566778999999 55555444333333 344455544 789999999987544
No 307
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.62 E-value=14 Score=38.41 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=34.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.......|+|+|| --.|-++.-- ...+.++..+.+ +..+|++||+.++...
T Consensus 193 raL~~~p~lLLLDE--------Pts~LD~~~~-~~l~~~L~~~~~-~~tiii~tH~~~~i~~ 244 (285)
T PRK14254 193 RAIAPDPEVILMDE--------PASALDPVAT-SKIEDLIEELAE-EYTVVIVTHNMQQAAR 244 (285)
T ss_pred HHHHcCCCEEEEeC--------CCCCCCHHHH-HHHHHHHHHHhc-CCEEEEEeCCHHHHHh
Confidence 34455668999999 6666666433 333445555554 4678999999887653
No 308
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.57 E-value=13 Score=38.46 Aligned_cols=52 Identities=6% Similarity=-0.008 Sum_probs=34.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
...+....++|+|| --.|-++..-. ....++..|.+. +..+|++||+.+...
T Consensus 158 raL~~~p~illlDE--------Pt~~LD~~~~~-~l~~~l~~l~~~~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 158 SILAMNPDIIVLDE--------PTAGLDPQSKR-QVMRLLKSLQTDENKTIILVSHDMNEVA 210 (286)
T ss_pred HHHHhCCCEEEEEC--------CcccCCHHHHH-HHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 33445668999999 66666554433 334455566554 789999999988654
No 309
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.48 E-value=13 Score=36.75 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=37.2
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.-.........++|+|| --.|-++..-..+. .++..+.+ +..+|++||..+....
T Consensus 146 l~la~aL~~~p~llllDE--------P~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDE--------ATSALDTHTEREIQ-AALRDVSK-GRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHhcC-CCEEEEEcCCHHHHHh
Confidence 333444566778999999 66676665444333 33444444 7789999999987754
No 310
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.44 E-value=13 Score=37.56 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=35.9
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+.......++|+|| --.|-++.--..+ +.+++.+.+ ++.+|++||+.+...
T Consensus 163 v~laral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~l~~-~~tiiivsH~~~~~~ 217 (258)
T PRK14268 163 LCIARTLAVKPKIILFDE--------PTSALDPISTARI-EDLIMNLKK-DYTIVIVTHNMQQAA 217 (258)
T ss_pred HHHHHHHHcCCCEEEEeC--------CCcccCHHHHHHH-HHHHHHHhh-CCEEEEEECCHHHHH
Confidence 333344455678999999 6666666554444 344444543 688999999987654
No 311
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=63.27 E-value=13 Score=37.81 Aligned_cols=58 Identities=9% Similarity=-0.043 Sum_probs=37.6
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.++.-.+.......++|+|| --.|-++..- ...+.++..+. .++.+|++||..++...
T Consensus 163 qrl~laral~~~p~llllDE--------Pt~gLD~~~~-~~l~~~l~~~~-~~~tiii~sh~~~~~~~ 220 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDE--------ATASIDMATE-NILQKVVMTAF-ADRTVVTIAHRVSTILD 220 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeC--------CccCCCHHHH-HHHHHHHHHhc-CCCEEEEEecChHHHHh
Confidence 33333344456678999999 7777776543 33334444443 37899999999987753
No 312
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=63.13 E-value=13 Score=38.09 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=34.3
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
......++|+|| --.|-++..-..+. .++..+.+.++.+|++||..+...
T Consensus 154 l~~~p~illlDE--------Pts~LD~~~~~~l~-~~l~~l~~~~~tIIiiSHd~~~~~ 203 (255)
T cd03236 154 LARDADFYFFDE--------PSSYLDIKQRLNAA-RLIRELAEDDNYVLVVEHDLAVLD 203 (255)
T ss_pred HHhCCCEEEEEC--------CCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHH
Confidence 344557999999 55665555444443 455566655788999999987765
No 313
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.00 E-value=15 Score=36.79 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=33.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|-++.- ......+++.+.+ +..+|++||+.+...
T Consensus 158 ral~~~p~llllDE--------P~~~LD~~~-~~~l~~~l~~~~~-~~tii~~sh~~~~~~ 208 (249)
T PRK14253 158 RTIAMEPDVILMDE--------PTSALDPIA-THKIEELMEELKK-NYTIVIVTHSMQQAR 208 (249)
T ss_pred HHHHcCCCEEEEeC--------CCccCCHHH-HHHHHHHHHHHhc-CCeEEEEecCHHHHH
Confidence 33455668999999 666665542 3333445555544 578899999987654
No 314
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=62.97 E-value=14 Score=39.49 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=35.8
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHh
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRL 428 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~ 428 (577)
++...+..+....|+|+|| --.|-+..--..| ..++..|.+. +..+||+||+.++....
T Consensus 169 Rv~iArAL~~~P~llilDE--------Pts~LD~~~~~~i-~~lL~~l~~~~~~til~iTHdl~~~~~~ 228 (331)
T PRK15079 169 RIGIARALILEPKLIICDE--------PVSALDVSIQAQV-VNLLQQLQREMGLSLIFIAHDLAVVKHI 228 (331)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CCccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 3333444566778999999 4344333322222 2334445444 78999999999887643
No 315
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=62.95 E-value=12 Score=47.58 Aligned_cols=154 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred hhhccccCccCCcchhhhhhhhhhccCccccc---CcccccccccccccccccccccccCCCCCCCchhHHHHHHHHHHH
Q psy13263 249 CSYMKESGCTGESTLLTQLCNYESQTPSGCFP---DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIE 325 (577)
Q Consensus 249 l~~mkGsn~~GKStlLk~i~~~~i~i~~GrhP---lLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~im 325 (577)
++-+-|++.+|||||++.++ |+.+ ..+..+..-...... ..++.+-.+|..-.--..+.+...|. +.
T Consensus 791 ~~aI~G~sGaGKSTLL~~La--------g~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~-~~ 860 (1394)
T TIGR00956 791 LTALMGASGAGKTTLLNVLA--------ERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLR-FS 860 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHh--------CCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHH-HH
Q ss_pred HHhcc-----------ccccccceecc-ceeeecccc---cchhhhhchhhhHHhhhcCCCc-eEEeecccCcccccccc
Q psy13263 326 KEIQT-----------YLRTQCAHFGC-TVIYSEAQK---KQKKYVLEVPSKYASKAKSNHQ-RVATKKKNVENYVTPEC 389 (577)
Q Consensus 326 aqig~-----------~VpA~~a~l~~-d~if~~iG~---~qStF~~Em~e~~~il~~a~~~-sLVLlDEtg~n~v~~LG 389 (577)
+.+-. .|-..-..+++ +..-..+|. +.| ..|-+++...+...... .++++|| --
T Consensus 861 a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS--gGqrqRl~Ia~aL~~~P~~iLlLDE--------PT 930 (1394)
T TIGR00956 861 AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN--VEQRKRLTIGVELVAKPKLLLFLDE--------PT 930 (1394)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC--HHHhhHHHHHHHHHcCCCeEEEEcC--------CC
Q ss_pred cCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH
Q psy13263 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS 423 (577)
Q Consensus 390 RGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e 423 (577)
.|-++ .....-+.+++.|.+.++.+|++||...
T Consensus 931 sgLD~-~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 931 SGLDS-QTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred CCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCCC
No 316
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=62.92 E-value=14 Score=37.90 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=33.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.- ....+.++..+.+. ++.+|++||..+...
T Consensus 150 raL~~~p~llilDE--------Pt~gLD~~~-~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 150 GVIAMEPQVLVLDE--------PTAGLDPQG-VKELIDFLNDLPETYGMTVIFSTHQLDLVP 202 (277)
T ss_pred HHHHcCCCEEEEeC--------CcccCCHHH-HHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 34455668999999 555554433 23334455555554 789999999988664
No 317
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=62.90 E-value=12 Score=37.20 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=34.5
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.......++|+|| --.|-++..-..+...+. .+.+ +..+|++||..+....
T Consensus 152 al~~~p~llllDE--------P~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~ 202 (237)
T cd03252 152 ALIHNPRILIFDE--------ATSALDYESEHAIMRNMH-DICA-GRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHhhCCCEEEEeC--------CcccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHHh
Confidence 3445668999999 667776665544444433 3333 7889999999987653
No 318
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=62.90 E-value=13 Score=39.32 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=34.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+..+....++|+|| --.|-++.--..+ +.++..+.+. +..+|++||+.+...
T Consensus 112 araL~~~p~lllLDE--------P~s~LD~~~~~~l-~~~l~~l~~~~g~tiiivTHd~~e~~ 165 (325)
T TIGR01187 112 ARALVFKPKILLLDE--------PLSALDKKLRDQM-QLELKTIQEQLGITFVFVTHDQEEAM 165 (325)
T ss_pred HHHHHhCCCEEEEeC--------CCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 344456678999999 6666665543333 3444455544 789999999986543
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=62.85 E-value=15 Score=36.33 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=36.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+......-++|+|| --.|-++..-..+...+ ..+.+.+..+|++||+.+...
T Consensus 125 aral~~~p~llilDE--------P~~~LD~~~~~~l~~~l-~~~~~~~~tvii~sH~~~~~~ 177 (223)
T TIGR03771 125 ARALATRPSVLLLDE--------PFTGLDMPTQELLTELF-IELAGAGTAILMTTHDLAQAM 177 (223)
T ss_pred HHHHhcCCCEEEEeC--------CcccCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHH
Confidence 344556778999999 66777666555554444 344455788999999987543
No 320
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=62.80 E-value=15 Score=41.11 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=35.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+..+...-|+|+|| --.|=++..- ...+.++..|.+.+..+|++||+.+...
T Consensus 418 ~al~~~p~lllLDE--------Pt~~LD~~~~-~~l~~~l~~l~~~g~tvi~~sHd~~~~~ 469 (506)
T PRK13549 418 KCLLLNPKILILDE--------PTRGIDVGAK-YEIYKLINQLVQQGVAIIVISSELPEVL 469 (506)
T ss_pred HHHhhCCCEEEEcC--------CCCCcCHhHH-HHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 33445667999999 5555555433 3334566667766888999999987654
No 321
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.56 E-value=14 Score=37.04 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=34.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+..+....++|+|| --.|-++.--..+ +.++..+.+ +..+|++||+.+...
T Consensus 160 ral~~~p~llllDE--------P~~~LD~~~~~~l-~~~L~~~~~-~~tiiivsH~~~~~~ 210 (251)
T PRK14270 160 RTIAVKPDVILMDE--------PTSALDPISTLKI-EDLMVELKK-EYTIVIVTHNMQQAS 210 (251)
T ss_pred HHHhcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHHh-CCeEEEEEcCHHHHH
Confidence 33455668999999 6677766544444 344444544 467899999987654
No 322
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=62.49 E-value=14 Score=37.13 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=35.4
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+.......++|+|| --.|-++.-...+.. ++..+.+ +..+|++||+.+...
T Consensus 155 v~laral~~~p~llllDE--------P~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~ 209 (250)
T PRK14240 155 LCIARALAVEPEVLLMDE--------PTSALDPISTLKIEE-LIQELKK-DYTIVIVTHNMQQAS 209 (250)
T ss_pred HHHHHHHhcCCCEEEEeC--------CCccCCHHHHHHHHH-HHHHHhc-CCeEEEEEeCHHHHH
Confidence 333344556678999999 666666655554433 3334433 678999999987543
No 323
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.11 E-value=24 Score=30.83 Aligned_cols=19 Identities=5% Similarity=-0.104 Sum_probs=15.7
Q ss_pred cccCCCCCCCchhHHHHHH
Q psy13263 302 GNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~val 320 (577)
++.||...|||...+.++.
T Consensus 2 ll~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEECcCCCCeeHHHHHHHh
Confidence 4679999999999887754
No 324
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=62.09 E-value=15 Score=39.51 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=38.0
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
++-.+.......|+|+|| --.|-++.--..|.. ++..|.+. +..+|++||+.+.+..
T Consensus 145 valArAL~~~P~llLLDE--------P~s~LD~~~r~~l~~-~L~~l~~~~g~tii~vTHd~~ea~~ 202 (353)
T PRK10851 145 VALARALAVEPQILLLDE--------PFGALDAQVRKELRR-WLRQLHEELKFTSVFVTHDQEEAME 202 (353)
T ss_pred HHHHHHHhcCCCEEEEeC--------CCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 333344556778999999 666666655544443 44455554 7899999999876543
No 325
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=62.03 E-value=25 Score=35.31 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=28.8
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS 423 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e 423 (577)
.-|.|+|| --.|-+...-. ...+++++|...|-.+|++.|+..
T Consensus 151 ~~LLllDE--------P~~~LDvAQ~~-aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 151 GQLLLLDE--------PMNSLDVAQQS-ALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred ceeEEecC--------CCcchhHHHHH-HHHHHHHHHHhCCcEEEEeccchh
Confidence 45788899 33333333322 235677888888999999999854
No 326
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=61.93 E-value=14 Score=39.33 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=36.0
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
++...+..+....|+|+|| --.|-+..--..| ..++..|.+. +..+||+||+..+...
T Consensus 169 Rv~IArAL~~~P~llilDE--------Pts~LD~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~ 227 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADE--------PTTALDVTVQAQI-MTLLNELKREFNTAIIMITHDLGVVAG 227 (330)
T ss_pred HHHHHHHHHcCCCEEEEeC--------CCccCCHHHHHHH-HHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 3333344566779999999 4444443333222 2344555554 7899999999987753
No 327
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.41 E-value=16 Score=36.62 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=34.4
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+......-++|+|| --.|-++.--..+ ..++..+.. +..+|++||..+...
T Consensus 154 aral~~~p~lllLDE--------P~~~LD~~~~~~l-~~~l~~~~~-~~tiii~tH~~~~~~ 205 (246)
T PRK14269 154 ARALAIKPKLLLLDE--------PTSALDPISSGVI-EELLKELSH-NLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHhcCCCEEEEcC--------CcccCCHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHH
Confidence 344456778999999 7777776543333 334444433 778999999987654
No 328
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.38 E-value=15 Score=36.89 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=37.2
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.++.-.+.......|+|+|| --.|-+...-..+. .++..+.+ +..+|++||..+...
T Consensus 156 qrv~laral~~~p~lllLDE--------P~~gLD~~~~~~l~-~~l~~~~~-~~tvii~sh~~~~~~ 212 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDE--------PCSALDPIATAKIE-DLIEDLKK-EYTVIIVTHNMQQAA 212 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHhh-CceEEEEEcCHHHHH
Confidence 33333444556778999999 77777666554443 44444444 578899999987654
No 329
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.38 E-value=14 Score=37.72 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=33.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.-...+. .++..+.+ +..+|++||+.+...
T Consensus 167 ral~~~p~lllLDE--------Pt~gLD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~ 217 (269)
T PRK14259 167 RTIAIEPEVILMDE--------PCSALDPISTLKIE-ETMHELKK-NFTIVIVTHNMQQAV 217 (269)
T ss_pred HHHhcCCCEEEEcC--------CCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 34455678999999 66666665444443 34444433 678899999986554
No 330
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=61.26 E-value=17 Score=36.72 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=32.8
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH-HHhh
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA-RRLR 429 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~-~l~~ 429 (577)
..|+|+|| --.|-++..-..+. .++..+.+.+..+|++||..+.. .++.
T Consensus 152 p~llllDE--------Pt~~LD~~~~~~l~-~~L~~~~~~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 152 GQLLLLDE--------PMNSLDVAQQAALD-RLLSELCQQGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred CCEEEEcC--------CcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 47999999 66777666544443 44444555578899999998744 4443
No 331
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.86 E-value=15 Score=37.11 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=33.7
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|-++.--..+ +.++..+.+ +..+|++||..+...
T Consensus 168 ral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~-~~tiiivtH~~~~~~ 218 (259)
T PRK14274 168 RALATNPDVLLMDE--------PTSALDPVSTRKI-EELILKLKE-KYTIVIVTHNMQQAA 218 (259)
T ss_pred HHHhcCCCEEEEcC--------CcccCCHHHHHHH-HHHHHHHhc-CCEEEEEEcCHHHHH
Confidence 34455668999999 6666666544434 344444544 678899999987654
No 332
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=60.72 E-value=15 Score=37.73 Aligned_cols=52 Identities=8% Similarity=-0.025 Sum_probs=32.7
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.--.. ...++..+.+.+..+|++||..+...
T Consensus 156 ral~~~p~iLlLDE--------Pt~gLD~~~~~~-l~~~L~~~~~~g~tiIiisH~~~~i~ 207 (264)
T PRK13546 156 INITVNPDILVIDE--------ALSVGDQTFAQK-CLDKIYEFKEQNKTIFFVSHNLGQVR 207 (264)
T ss_pred HHHhhCCCEEEEeC--------ccccCCHHHHHH-HHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 34455668999999 555555432222 33334444445789999999987654
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=60.69 E-value=15 Score=36.22 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.0
Q ss_pred hhhhccccCccCCcchhhhhhh
Q psy13263 248 ACSYMKESGCTGESTLLTQLCN 269 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~ 269 (577)
.+..+.|+|..||||+++.++.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3455679999999999998874
No 334
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=60.51 E-value=16 Score=36.38 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=34.8
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..+...+.......++|+|| --.|-++.--..+. .++..+.+ +..+|++||+.+...
T Consensus 150 qrv~laral~~~p~~lllDE--------Pt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDE--------PVAGMTDEETEKTA-ELLKSLAG-KHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHHHHhcCCCEEEecC--------CccCCCHHHHHHHH-HHHHHHhc-CCEEEEEECCHHHHH
Confidence 33333444556678999999 55555554433332 33333433 568999999988765
No 335
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=60.40 E-value=18 Score=35.42 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=35.5
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.++.-.+.......++|+|| --.|-++.-.. ....++..+.+ +..+|++||..++..
T Consensus 140 qrv~la~al~~~p~llllDE--------P~~~LD~~~~~-~l~~~l~~~~~-~~tii~~sH~~~~~~ 196 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDE--------PTSGLDPASRR-AIWDLILEVRK-GRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHHHHhcCCCEEEECC--------CCCCCCHHHHH-HHHHHHHHHhc-CCEEEEEcCCHHHHH
Confidence 33443445566778999999 55555544332 22334444444 578999999988765
No 336
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=60.39 E-value=17 Score=39.53 Aligned_cols=59 Identities=17% Similarity=0.083 Sum_probs=36.5
Q ss_pred hhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 359 VPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 359 m~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
..+++-.+..+....|+|+|| -..|-+..-...|. ..+..|.+. +..+|++||+.+.+.
T Consensus 150 ~QRVaLARaL~~~P~llLLDE--------P~s~LD~~~r~~l~-~~L~~l~~~~g~tiI~vTHd~~ea~ 209 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDE--------SLSALDYKLRKQMQ-NELKALQRKLGITFVFVTHDQEEAL 209 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeC--------CCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 334443444566678999999 55555554433333 333444443 789999999987654
No 337
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=60.28 E-value=18 Score=42.09 Aligned_cols=96 Identities=6% Similarity=-0.111 Sum_probs=55.3
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhH------HhhhcCCCceEE
Q psy13263 302 GNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY------ASKAKSNHQRVA 375 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~------~il~~a~~~sLV 375 (577)
.|.|+...|||..+..++.-. ....-|. ..+|+.... |..++.... .....-..-.|+
T Consensus 318 ~LyG~sGsGKTHLL~AIa~~a-~~~~~g~-----------~V~Yitaee----f~~el~~al~~~~~~~f~~~y~~~DLL 381 (617)
T PRK14086 318 FIYGESGLGKTHLLHAIGHYA-RRLYPGT-----------RVRYVSSEE----FTNEFINSIRDGKGDSFRRRYREMDIL 381 (617)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHhCCCC-----------eEEEeeHHH----HHHHHHHHHHhccHHHHHHHhhcCCEE
Confidence 477999999999999887532 1111121 123333322 332222110 011111123689
Q ss_pred eecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 376 TKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 376 LlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
+||+ |+.--..........-+++.+.+.+..+|||++.
T Consensus 382 lIDD--------Iq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 382 LVDD--------IQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred EEeh--------hccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999 8876555444455667888888877788888887
No 338
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=60.10 E-value=16 Score=35.80 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=34.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+.......|+|+|| --.|-++..-..+. .++..+.+ +..+|++||..+....
T Consensus 151 aral~~~p~llllDE--------P~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~ 203 (221)
T cd03244 151 ARALLRKSKILVLDE--------ATASVDPETDALIQ-KTIREAFK-DCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHhcCCCEEEEeC--------ccccCCHHHHHHHH-HHHHHhcC-CCEEEEEeCCHHHHhh
Confidence 344456678999999 66666665443333 33333333 5678999999877653
No 339
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=60.05 E-value=16 Score=38.90 Aligned_cols=54 Identities=11% Similarity=0.008 Sum_probs=33.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
.+..+...-|+|+|| --.|-++.-- .....++..|.+. +..+||+||+.++...
T Consensus 165 ArAL~~~P~llilDE--------Pts~LD~~~~-~~il~lL~~l~~~~g~til~iTHdl~~~~~ 219 (326)
T PRK11022 165 AMAIACRPKLLIADE--------PTTALDVTIQ-AQIIELLLELQQKENMALVLITHDLALVAE 219 (326)
T ss_pred HHHHHhCCCEEEEeC--------CCCCCCHHHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 344455668999999 3333333222 2223334445443 7899999999987753
No 340
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.94 E-value=18 Score=37.44 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=34.3
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|=++..-. ....++..+.+. +..+|++||+.+...
T Consensus 154 raL~~~p~lLilDE--------Pt~gLD~~~~~-~l~~~l~~l~~~~g~tillvsH~~~~~~ 206 (283)
T PRK13636 154 GVLVMEPKVLVLDE--------PTAGLDPMGVS-EIMKLLVEMQKELGLTIIIATHDIDIVP 206 (283)
T ss_pred HHHHcCCCEEEEeC--------CccCCCHHHHH-HHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 34455678999999 55555443322 233455566654 789999999988765
No 341
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=59.83 E-value=18 Score=37.09 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=36.4
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......++|+|| --.|-++.--. ..+.++..+.+ +..+|++||..+...
T Consensus 176 rv~laral~~~p~lllLDE--------Pt~gLD~~~~~-~l~~~L~~~~~-~~tiiivtH~~~~~~ 231 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDE--------PTSALDPISTL-KIEELITELKS-KYTIVIVTHNMQQAA 231 (272)
T ss_pred HHHHHHHHHCCCCEEEEeC--------CcccCCHHHHH-HHHHHHHHHHh-CCeEEEEeCCHHHHH
Confidence 3333344556778999999 66776665433 33444445544 678899999987654
No 342
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=59.77 E-value=18 Score=40.45 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=35.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+..+...-|+|+|| --.|=++.--..| ..++..+.+.+..+|++||+.+....
T Consensus 422 ral~~~p~lLlLDE--------Pt~~LD~~~~~~l-~~~l~~l~~~g~tvi~vsHd~~~~~~ 474 (510)
T PRK09700 422 KWLCCCPEVIIFDE--------PTRGIDVGAKAEI-YKVMRQLADDGKVILMVSSELPEIIT 474 (510)
T ss_pred HHHhcCCCEEEECC--------CCCCcCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence 34455678999999 5566665543333 34455555557889999999876653
No 343
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.13 E-value=14 Score=45.45 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=36.6
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
--+++||| |-||=..++...++.+|..|...++.++|+||..++.....
T Consensus 979 ~~~l~lDE---------p~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 979 LDSLFIDE---------GFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred CCeEEecC---------CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 45889999 44444455556677778888777888999999999887554
No 344
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=58.99 E-value=16 Score=37.56 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=36.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
++.-.+.......|+|+|| --.|-++.--..+.. ++..+.+ ++.+|++||..+....
T Consensus 169 rv~LAraL~~~p~lllLDE--------Pt~~LD~~~~~~l~~-~L~~~~~-~~tiii~sH~~~~~~~ 225 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDE--------PCSALDPISTRQVEE-LCLELKE-QYTIIMVTHNMQQASR 225 (274)
T ss_pred HHHHHHHHhhCCCEEEEeC--------CcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHH
Confidence 3333344456778999999 666666554444433 3333443 6789999999876653
No 345
>KOG0057|consensus
Probab=58.87 E-value=21 Score=40.99 Aligned_cols=126 Identities=10% Similarity=0.083 Sum_probs=70.9
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHHHH------------------HHHHhccccccccceeccceeeecc--c--
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKS------------------IEKEIQTYLRTQCAHFGCTVIYSEA--Q-- 349 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~------------------imaqig~~VpA~~a~l~~d~if~~i--G-- 349 (577)
+|...+..+.+|.|+|.+||+.+++.+=..-+ -.-++-.|||.+..-|- |-|+-.+ |
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~ 450 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNP 450 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCC
Confidence 57777777889999999999999998722110 12233345665543332 1111111 1
Q ss_pred ------------------------ccchhhh---------hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcc
Q psy13263 350 ------------------------KKQKKYV---------LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTND 396 (577)
Q Consensus 350 ------------------------~~qStF~---------~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~D 396 (577)
++.+|-. .|.++++..+..-...-++++|| -||..|
T Consensus 451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE-----------aTS~LD 519 (591)
T KOG0057|consen 451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE-----------ATSALD 519 (591)
T ss_pred CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC-----------cccccc
Confidence 0111111 12222222222223446788999 677777
Q ss_pred hhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhc
Q psy13263 397 GCVIARVTLEKFLQI--GCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 397 G~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~ 430 (577)
--. =..+++.+... +-.+|+.-|.|.+...+..
T Consensus 520 ~~T-E~~i~~~i~~~~~~rTvI~IvH~l~ll~~~Dk 554 (591)
T KOG0057|consen 520 SET-EREILDMIMDVMSGRTVIMIVHRLDLLKDFDK 554 (591)
T ss_pred hhh-HHHHHHHHHHhcCCCeEEEEEecchhHhcCCE
Confidence 432 23566666664 5688999999998876653
No 346
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=58.66 E-value=19 Score=40.11 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=34.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| --.|=++.- ....+.++..|.+.+..+|++||+.+...
T Consensus 416 ~al~~~p~lllLDE--------Pt~~LD~~~-~~~l~~~l~~l~~~g~tviivsHd~~~~~ 467 (500)
T TIGR02633 416 KMLLTNPRVLILDE--------PTRGVDVGA-KYEIYKLINQLAQEGVAIIVVSSELAEVL 467 (500)
T ss_pred HHHhhCCCEEEEcC--------CCCCcCHhH-HHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 33445667999999 555555432 22333456667666778999999987664
No 347
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=58.62 E-value=18 Score=36.35 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=33.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|-++.-...+ ..+++.+.+ +..+|++||..+...
T Consensus 160 ral~~~p~llllDE--------P~~~LD~~~~~~l-~~~l~~~~~-~~tiiiisH~~~~~~ 210 (251)
T PRK14251 160 RALAVRPKVVLLDE--------PTSALDPISSSEI-EETLMELKH-QYTFIMVTHNLQQAG 210 (251)
T ss_pred HHHhcCCCEEEecC--------CCccCCHHHHHHH-HHHHHHHHc-CCeEEEEECCHHHHH
Confidence 33455668999999 6666666443333 344444433 678999999987654
No 348
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=58.59 E-value=20 Score=38.70 Aligned_cols=61 Identities=8% Similarity=0.001 Sum_probs=37.6
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHH-HHhh
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVA-RRLR 429 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~-~l~~ 429 (577)
.+++-.+..+....|+|+|| --.|-++.-...|... +..|.+. +..+|++||+.+.+ .+..
T Consensus 141 QRvalARAL~~~P~llLLDE--------P~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~l~D 203 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDE--------PLSNLDAKLRVQMRLE-IQRLHRRLKTTSLYVTHDQVEAMTLAD 203 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 33444455567788999999 5555554444434333 3445544 78999999997644 4443
No 349
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=58.50 E-value=17 Score=37.82 Aligned_cols=52 Identities=8% Similarity=-0.065 Sum_probs=33.8
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++..-..+...++..+. .+..+|++||..+...
T Consensus 172 raL~~~p~iLiLDE--------Pt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~ 223 (282)
T cd03291 172 RAVYKDADLYLLDS--------PFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLK 223 (282)
T ss_pred HHHhcCCCEEEEEC--------CCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHH
Confidence 34455678999999 6666665443334333444443 3678999999987654
No 350
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=58.41 E-value=25 Score=39.24 Aligned_cols=22 Identities=5% Similarity=-0.160 Sum_probs=18.1
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..++.||+..|||.+.+.++..
T Consensus 219 gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3457799999999999988753
No 351
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=58.27 E-value=11 Score=38.15 Aligned_cols=50 Identities=6% Similarity=0.001 Sum_probs=33.3
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
....++|+|| --.|-++..-..+...+ ..+. .+..+|++||..++.+.+.
T Consensus 187 ~~~~illlDE--------Pt~~ld~~~~~~~~~~l-~~~~-~g~~ii~iSH~~~~~~~~d 236 (251)
T cd03273 187 KPAPMYILDE--------VDAALDLSHTQNIGRMI-KTHF-KGSQFIVVSLKEGMFNNAN 236 (251)
T ss_pred cCCCEEEEeC--------CCcCCCHHHHHHHHHHH-HHHc-CCCEEEEEECCHHHHHhCC
Confidence 3446999999 77777666544443322 2232 3667999999988888654
No 352
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=57.97 E-value=18 Score=36.33 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=33.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++..-..+ ..++..+.+ +..+|++||+.+...
T Consensus 162 ral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~-~~tvii~tH~~~~~~ 212 (253)
T PRK14242 162 RALAVEPEVLLMDE--------PASALDPIATQKI-EELIHELKA-RYTIIIVTHNMQQAA 212 (253)
T ss_pred HHHhcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHhc-CCeEEEEEecHHHHH
Confidence 34455668999999 6666665544433 334444433 678899999987654
No 353
>CHL00176 ftsH cell division protein; Validated
Probab=57.66 E-value=31 Score=40.37 Aligned_cols=21 Identities=5% Similarity=-0.077 Sum_probs=17.5
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..++.||...|||.+.+.++.
T Consensus 218 gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356779999999999998864
No 354
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.34 E-value=19 Score=36.12 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=34.0
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.....+. .++..+.+ +..+|++||..+...
T Consensus 160 aral~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~-~~tii~vsH~~~~~~ 211 (252)
T PRK14255 160 ARVLAVKPDVILLDE--------PTSALDPISSTQIE-NMLLELRD-QYTIILVTHSMHQAS 211 (252)
T ss_pred HHHHhcCCCEEEEcC--------CCccCCHHHHHHHH-HHHHHHHh-CCEEEEEECCHHHHH
Confidence 344455678999999 66666665544443 33334444 578999999987654
No 355
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=57.31 E-value=15 Score=44.48 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=42.1
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
.+++||| |-||=-.|+..-+..+++.+...+..++++||..+|.+.+.
T Consensus 843 ~~l~LDE---------pf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 843 ELLFLDE---------PFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred CeeEeeC---------CCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 6788999 77777788888889999999998899999999999997665
No 356
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=57.27 E-value=20 Score=40.30 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=36.4
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
..+...-|+|+|| --.|=++.-...|.. ++..|.+.+..+|++||+.+....
T Consensus 417 al~~~p~lLlLDE--------Pt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~ 468 (510)
T PRK15439 417 CLEASPQLLIVDE--------PTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQ 468 (510)
T ss_pred HHhhCCCEEEECC--------CCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHH
Confidence 3445668999999 777776665555544 444555568889999999877653
No 357
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=57.27 E-value=23 Score=36.80 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=44.9
Q ss_pred hchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc----CCeEEEecchHHHHHHhh
Q psy13263 357 LEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI----GCLTVFATHYHSVARRLR 429 (577)
Q Consensus 357 ~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~----~~~~lfaTHy~eL~~l~~ 429 (577)
.+..+++..++......|+|+|| -|+.-|- ++=..|+..|.+. +-..||.||+..+...+-
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDE-----------ptSaLD~-siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDE-----------PTSALDV-SVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecC-----------chhhhcH-HHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 35666776677778888999999 5777773 5555666666543 668899999999988654
No 358
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.71 E-value=20 Score=35.95 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=34.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.......++|+|| --.|-++..-..+. .++..+.+ +..+|++||..+....
T Consensus 159 ral~~~p~llllDE--------P~~gLD~~~~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 159 RTIAVSPEVILMDE--------PCSALDPISTTKIE-DLIHKLKE-DYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHHcCCCEEEEcC--------CCccCCHHHHHHHH-HHHHHHhc-CCeEEEEECCHHHHHh
Confidence 34455678999999 77777765444443 33334433 6789999999876543
No 359
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=56.47 E-value=19 Score=36.06 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=33.9
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++..-..+. .++..+.+ +..+|++||+.+...
T Consensus 160 aral~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~ 211 (252)
T PRK14239 160 ARVLATSPKIILLDE--------PTSALDPISAGKIE-ETLLGLKD-DYTMLLVTRSMQQAS 211 (252)
T ss_pred HHHHhcCCCEEEEcC--------CccccCHHHHHHHH-HHHHHHhh-CCeEEEEECCHHHHH
Confidence 334455668999999 66666665544443 34444443 578999999986543
No 360
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=56.37 E-value=22 Score=39.37 Aligned_cols=98 Identities=10% Similarity=-0.048 Sum_probs=53.8
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhH------HhhhcCCCceE
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY------ASKAKSNHQRV 374 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~------~il~~a~~~sL 374 (577)
..+.||...|||...+.++.-. ..+- | +...+|+... .|+.++.... .....-..-.|
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~--~~~~----~------~~~v~yi~~~----~~~~~~~~~~~~~~~~~~~~~~~~~dl 214 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYI--LEKN----P------NAKVVYVTSE----KFTNDFVNALRNNTMEEFKEKYRSVDV 214 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHhC----C------CCeEEEEEHH----HHHHHHHHHHHcCcHHHHHHHHhcCCE
Confidence 3577999999999999887643 2221 0 1122333222 2332222110 01111112358
Q ss_pred EeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 375 ATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 375 VLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
++||| ++.-............++.++.+.+..+|+++...
T Consensus 215 LiiDD--------i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 215 LLIDD--------IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred EEEeh--------hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 89999 87654433333455677778888777778887663
No 361
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=56.36 E-value=19 Score=36.70 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=35.9
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......++|+|| --.|-++.-...+ ..++..+.+ +..+|++||+.+...
T Consensus 171 rv~laral~~~p~lllLDE--------Pt~~LD~~~~~~l-~~~L~~l~~-~~tiiivtH~~~~~~ 226 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDE--------PCSALDPIATAKV-EELIDELRQ-NYTIVIVTHSMQQAA 226 (267)
T ss_pred HHHHHHHHHcCCCEEEEeC--------CCcCCCHHHHHHH-HHHHHHHhc-CCeEEEEEcCHHHHH
Confidence 3333344456778999999 6666665544333 344444544 578899999987664
No 362
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=56.25 E-value=20 Score=40.44 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=35.8
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
+......-++|+|| -..|=++.--..|. .++..+.+. +..+|++||+.+....
T Consensus 438 ~al~~~p~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~ 491 (529)
T PRK15134 438 RALILKPSLIILDE--------PTSSLDKTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRA 491 (529)
T ss_pred HHHhCCCCEEEeeC--------CccccCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHH
Confidence 34455678999999 66666665544444 344445544 7889999999876653
No 363
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.21 E-value=22 Score=35.62 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=33.3
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++..-..|. .++..+.+ +..+|++||+.+...
T Consensus 158 aral~~~p~lllLDE--------P~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~ 209 (250)
T PRK14247 158 ARALAFQPEVLLADE--------PTANLDPENTAKIE-SLFLELKK-DMTIVLVTHFPQQAA 209 (250)
T ss_pred HHHHhcCCCEEEEcC--------CCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 344456678999999 66665554433333 33344443 678999999987654
No 364
>PRK13409 putative ATPase RIL; Provisional
Probab=56.03 E-value=21 Score=41.22 Aligned_cols=52 Identities=6% Similarity=0.033 Sum_probs=35.2
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHh
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRL 428 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~ 428 (577)
.+...-|+|||| --.|=+...-..|. .++..|.+. +..+|++||+.++....
T Consensus 468 L~~~p~llLLDE--------Pt~~LD~~~~~~l~-~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 468 LSRDADLYLLDE--------PSAHLDVEQRLAVA-KAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred HhcCCCEEEEeC--------CccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 344678999999 55565555444444 344555554 78899999998877643
No 365
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=56.00 E-value=35 Score=41.31 Aligned_cols=121 Identities=12% Similarity=-0.032 Sum_probs=63.4
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccc--hh----hhhchhhhHHhhhcCCCce
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQ--KK----YVLEVPSKYASKAKSNHQR 373 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~q--St----F~~Em~e~~~il~~a~~~s 373 (577)
..+++||...|||...+.++... . ...||..-... ..++.++|.-. .. |...+.++.........+.
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i---~--~~~v~~~l~~~--~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ 282 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRI---A--AGDVPPALRNV--RLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPI 282 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHH---h--hCCCCccccCC--eEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCe
Confidence 34688999999999988776532 1 12444321110 12222332100 12 3334444433333345678
Q ss_pred EEeecccCcccc-cccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCCCc
Q psy13263 374 VATKKKNVENYV-TPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNV 434 (577)
Q Consensus 374 LVLlDEtg~n~v-~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~~V 434 (577)
+++||| + +-+|.|.+. |..-+..++.-.+.+ ..++|-||...|...+....+.+
T Consensus 283 ILfIDE-----ih~l~~~g~~~--~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL 338 (852)
T TIGR03345 283 ILFIDE-----AHTLIGAGGQA--GQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPAL 338 (852)
T ss_pred EEEEeC-----hHHhccCCCcc--ccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHH
Confidence 999999 2 112444321 111123445444455 67999999998876665555443
No 366
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=55.87 E-value=16 Score=44.96 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=37.9
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
--+++||| |-|+=..++...++.+|+.|...|..|+|+||..+|.+-.
T Consensus 976 ~~~l~lDE---------p~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 976 IDSLFLDE---------GFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCEEEEeC---------CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 35789999 5566666677777888999987799999999988886643
No 367
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=55.78 E-value=20 Score=40.02 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=34.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
........++|+|| --.|=++.-...|. .++..|.+.+..+|++||+.+...
T Consensus 154 ~al~~~p~lllLDE--------Pt~~LD~~~~~~l~-~~l~~l~~~g~tviiitHd~~~~~ 205 (500)
T TIGR02633 154 KALNKQARLLILDE--------PSSSLTEKETEILL-DIIRDLKAHGVACVYISHKLNEVK 205 (500)
T ss_pred HHHhhCCCEEEEeC--------CCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHH
Confidence 33445667999999 66666655443333 345556656788999999977654
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=55.73 E-value=38 Score=43.46 Aligned_cols=46 Identities=9% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARR 427 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l 427 (577)
....++|||| .|+..|... ...|.+.|.+. +|.+|++||-.+....
T Consensus 1370 r~~~ILlLDE-----------aTS~lD~~T-e~~I~~~L~~~~~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1370 SKAKILLLDE-----------PSAHLDPVT-LQIIRKTLKQSFSNCTVILSEHRVEALLE 1417 (1490)
T ss_pred CCCCEEEEeC-----------CcccCCHHH-HHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 3567999999 788888633 44455555544 7999999999765543
No 369
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=55.55 E-value=22 Score=39.77 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=34.4
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.......|+|+|| --.|=++..-..+. .++..+.+.+..+|++||+.+...
T Consensus 409 al~~~p~lllLDE--------Pt~~LD~~~~~~l~-~~l~~~~~~g~tviivtHd~~~~~ 459 (501)
T PRK10762 409 GLMTRPKVLILDE--------PTRGVDVGAKKEIY-QLINQFKAEGLSIILVSSEMPEVL 459 (501)
T ss_pred HHhhCCCEEEEcC--------CCCCCCHhHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3445668999999 55666655444444 344455555788999999987665
No 370
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=55.45 E-value=4.7 Score=38.08 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.4
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccC
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTP 275 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~ 275 (577)
++..++|+|++|||++++.++....+.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~ 49 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQ 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 5788999999999999999988776665
No 371
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=55.23 E-value=21 Score=38.70 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=36.5
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~ 426 (577)
++-.+..+....|+|+|| --.|-++.-...|... +..|.+. +..+|++||+.+.+.
T Consensus 146 vaLARAL~~~P~llLLDE--------P~s~LD~~~r~~l~~~-l~~l~~~~~g~til~vTHd~~ea~ 203 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDE--------PLSALDANIRANMREE-IAALHEELPELTILCVTHDQDDAL 203 (362)
T ss_pred HHHHHHHhcCCCEEEEcC--------ccccCCHHHHHHHHHH-HHHHHHhCCCCEEEEEeCCHHHHH
Confidence 333445567788999999 6666665544444333 3444544 689999999987654
No 372
>KOG0734|consensus
Probab=55.19 E-value=29 Score=40.02 Aligned_cols=131 Identities=14% Similarity=0.175 Sum_probs=82.7
Q ss_pred cccccccccc--ccccccc---ccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecccccchhh
Q psy13263 282 MSELLKYFEN--AFDHKEA---SSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKY 355 (577)
Q Consensus 282 Le~~l~~~~n--~F~~~~a---~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG~~qStF 355 (577)
|++++.|+.+ .|..-.. +..+++||-.-|||..-++++= +|. ||-..+.=+- |.+|+++|. .
T Consensus 316 LeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG----EA~----VPFF~~sGSEFdEm~VGvGA--r-- 383 (752)
T KOG0734|consen 316 LEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG----EAG----VPFFYASGSEFDEMFVGVGA--R-- 383 (752)
T ss_pred HHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc----ccC----CCeEeccccchhhhhhcccH--H--
Confidence 3445556544 4443321 2345778999999999888762 343 3333332222 778888886 2
Q ss_pred hhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--------CCeEEEecchHHHHHH
Q psy13263 356 VLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--------GCLTVFATHYHSVARR 427 (577)
Q Consensus 356 ~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--------~~~~lfaTHy~eL~~l 427 (577)
.+.++.. -..+...|++.||| +|.+|.--++.|+. -+.-.|..|+-. +..+|-||.|.+..+-
T Consensus 384 --RVRdLF~-aAk~~APcIIFIDE-----iDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 384 --RVRDLFA-AAKARAPCIIFIDE-----IDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred --HHHHHHH-HHHhcCCeEEEEec-----hhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 2222222 23466789999999 55588888888876 566666666532 6789999999998886
Q ss_pred hhcCCC
Q psy13263 428 LREEPN 433 (577)
Q Consensus 428 ~~~~~~ 433 (577)
+-..|+
T Consensus 455 AL~RPG 460 (752)
T KOG0734|consen 455 ALTRPG 460 (752)
T ss_pred HhcCCC
Confidence 655554
No 373
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.07 E-value=23 Score=37.11 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=35.9
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+...+..+....|+|+|| --.|-++.--..| +.++..+.+ +..+|++||..+...
T Consensus 209 v~LAraL~~~p~lLLLDE--------PtsgLD~~~~~~l-~~~L~~~~~-~~tiiivtH~~~~i~ 263 (305)
T PRK14264 209 LCIARCLAVDPEVILMDE--------PASALDPIATSKI-EDLIEELAE-EYTVVVVTHNMQQAA 263 (305)
T ss_pred HHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHhc-CCEEEEEEcCHHHHH
Confidence 333344556778999999 7777766444333 444445544 467899999987754
No 374
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=54.92 E-value=23 Score=39.57 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=35.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| --.|=++.--..|.. ++..|.+.+..+|++||+.+...
T Consensus 409 ~al~~~p~lllLDE--------Pt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~ 460 (501)
T PRK11288 409 RWLSEDMKVILLDE--------PTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVL 460 (501)
T ss_pred HHHccCCCEEEEcC--------CCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHH
Confidence 34455678999999 556666654444433 34445666788999999987665
No 375
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.54 E-value=22 Score=35.59 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=32.6
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
.+.......++|+|| --.|-++.-...+ +.++..+.+ +..+|++||+.+..
T Consensus 158 a~al~~~p~llllDE--------P~~~LD~~~~~~l-~~~l~~~~~-~~tili~sH~~~~~ 208 (250)
T PRK14262 158 ARALAVEPEVILLDE--------PTSALDPIATQRI-EKLLEELSE-NYTIVIVTHNIGQA 208 (250)
T ss_pred HHHHhCCCCEEEEeC--------CccccCHHHHHHH-HHHHHHHhc-CcEEEEEeCCHHHH
Confidence 344455678999999 6666655544443 333334443 67889999998754
No 376
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=54.41 E-value=23 Score=38.10 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=37.8
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
++.-.+..+....++|+|| --.|-++.--. ..+.++..+.+. +..+|++||..++..-
T Consensus 148 RV~IARAL~~~P~iLLlDE--------Pts~LD~~t~~-~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDE--------ATSALDPATTQ-SILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHHHhCCCEEEEeC--------CcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3333445567779999999 55555544332 333455566554 7899999999887753
No 377
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=54.38 E-value=2.7 Score=48.78 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHhcCCeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCC------CCcHHHH
Q psy13263 398 CVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGIC------PKSFGFN 471 (577)
Q Consensus 398 ~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~------~~SyGi~ 471 (577)
+.||.|.++.+=...-++-+.+|||.|.++..-+--+.| .|.-. .+..++.|-.+ ..+.|.+
T Consensus 498 AnLAEaAa~~IGan~lLaRVgayYHDIGK~~rP~~FiEN-Q~~g~-----------N~Hd~lsP~lSa~II~sHv~eGv~ 565 (700)
T COG1480 498 ANLAEAAAEEIGANSLLARVGAYYHDIGKMKRPLFFIEN-QMGGK-----------NPHDDLSPQLSALIIISHVKEGVE 565 (700)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhcccccCCcccccc-ccCCC-----------CCcccCCHHHHHHHHHHhhhhHHH
Confidence 345666666554433466778999999997653222222 11111 11113333332 2479999
Q ss_pred HHHHcCCCHHHHHHHHHH
Q psy13263 472 VAELAGIPEDVVKFGTTV 489 (577)
Q Consensus 472 vArlaGlP~~VI~rA~ei 489 (577)
+||.++||++|++-+.+-
T Consensus 566 mar~y~lPq~iidii~eH 583 (700)
T COG1480 566 MAREYKLPQEIIDIIPEH 583 (700)
T ss_pred HHHHcCCCHHHHHHHHHh
Confidence 999999999999987763
No 378
>KOG0526|consensus
Probab=54.08 E-value=13 Score=42.28 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCCCCCCCCcccccccccCCCcccc
Q psy13263 72 SEDEYVPPKAEVESESEHSSGEEEL 96 (577)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (577)
.|+||+|-.-.++.++|.+|++.++
T Consensus 468 ~Dedf~~~~~~d~vaee~dS~~~ds 492 (615)
T KOG0526|consen 468 EDEDFKPGEEDDDVAEEFDSDEADS 492 (615)
T ss_pred hhhhcccCccccccccccCCccccc
Confidence 3449999987777777777755543
No 379
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=53.94 E-value=23 Score=36.11 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=33.2
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++..-. ....++..+.+ +..+|++||..+...
T Consensus 175 aral~~~p~lllLDE--------Pt~~LD~~~~~-~l~~~l~~~~~-~~tiii~tH~~~~~~ 226 (267)
T PRK14237 175 ARAIAVKPDILLMDE--------PASALDPISTM-QLEETMFELKK-NYTIIIVTHNMQQAA 226 (267)
T ss_pred HHHHhcCCCEEEEeC--------CcccCCHHHHH-HHHHHHHHHhc-CCEEEEEecCHHHHH
Confidence 344455668999999 66666654433 33334444433 678899999987653
No 380
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=53.86 E-value=23 Score=39.73 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=32.7
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|=++.-...+ ..+++.|.+. +..+|++||+.+...
T Consensus 181 ~al~~~p~lllLDE--------Pt~~LD~~~~~~l-~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 181 RQLAKEPFLFLADE--------PTGTLDPQTAKLV-HNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHHhcCCCEEEeeC--------CcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 34455677999999 4444433332222 2345566554 788999999987654
No 381
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=53.74 E-value=22 Score=38.27 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=36.6
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++-.+..+....|+|+|| --.|-++.-...|.. ++..|.+. +..+|++||+.+.+.
T Consensus 144 RVaLARaL~~~P~lLLLDE--------P~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~e~~ 201 (351)
T PRK11432 144 RVALARALILKPKVLLFDE--------PLSNLDANLRRSMRE-KIRELQQQFNITSLYVTHDQSEAF 201 (351)
T ss_pred HHHHHHHHHcCCCEEEEcC--------CcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHH
Confidence 3433445566778999999 555555554444333 34444444 789999999987653
No 382
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=53.73 E-value=24 Score=36.18 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=33.8
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......++|+|| --.|-++.-...+... +..+.+ +..+|++||+.+...
T Consensus 180 raL~~~p~lllLDE--------Pt~~LD~~~~~~l~~~-l~~~~~-~~tiiivsH~~~~i~ 230 (271)
T PRK14238 180 RCLAIEPDVILMDE--------PTSALDPISTLKVEEL-VQELKK-DYSIIIVTHNMQQAA 230 (271)
T ss_pred HHHHcCCCEEEEeC--------CCCcCCHHHHHHHHHH-HHHHHc-CCEEEEEEcCHHHHH
Confidence 33445668999999 6666666555444443 344444 678899999987654
No 383
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.46 E-value=24 Score=35.94 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=33.7
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-+..--..+. .++..+.+ ++.+|++||..+...
T Consensus 165 aral~~~P~llllDE--------Pt~~LD~~~~~~l~-~~l~~~~~-~~tiilvsh~~~~~~ 216 (257)
T PRK14246 165 ARALALKPKVLLMDE--------PTSMIDIVNSQAIE-KLITELKN-EIAIVIVSHNPQQVA 216 (257)
T ss_pred HHHHHcCCCEEEEcC--------CCccCCHHHHHHHH-HHHHHHhc-CcEEEEEECCHHHHH
Confidence 344556778999999 55565555433333 33334433 689999999988664
No 384
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.40 E-value=24 Score=36.58 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=34.3
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+.......|+|+|| --.|=++.--..+. .++..+.. +..+|++||..+...
T Consensus 191 v~LAraL~~~p~lllLDE--------Pt~gLD~~~~~~l~-~~L~~~~~-~~tvIivsH~~~~~~ 245 (286)
T PRK14275 191 LCVARTLAVEPEILLLDE--------PTSALDPKATAKIE-DLIQELRG-SYTIMIVTHNMQQAS 245 (286)
T ss_pred HHHHHHHhcCCCEEEEeC--------CCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHH
Confidence 333344455668999999 66666554333333 33444443 578999999988764
No 385
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=53.23 E-value=24 Score=36.66 Aligned_cols=52 Identities=8% Similarity=0.093 Sum_probs=33.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.......++|+|| --.|-++.....|.-.+. .+. .++.+|++||.++....
T Consensus 151 Rall~~p~illlDE--------pts~LD~~~~~~l~~~l~-~~~-~~~tii~isH~~~~i~~ 202 (275)
T cd03289 151 RSVLSKAKILLLDE--------PSAHLDPITYQVIRKTLK-QAF-ADCTVILSEHRIEAMLE 202 (275)
T ss_pred HHHhcCCCEEEEEC--------ccccCCHHHHHHHHHHHH-Hhc-CCCEEEEEECCHHHHHh
Confidence 34455678999999 666666554443333333 222 37899999999876553
No 386
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=53.22 E-value=23 Score=39.74 Aligned_cols=52 Identities=6% Similarity=-0.026 Sum_probs=33.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|=++.--..+. .++..+.+. +..+|++||+.+...
T Consensus 440 ral~~~p~lLllDE--------Pt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~ 492 (520)
T TIGR03269 440 QVLIKEPRIVILDE--------PTGTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVL 492 (520)
T ss_pred HHHhcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 34455678999999 55555544333333 333444443 788999999987665
No 387
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=53.21 E-value=55 Score=33.76 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=42.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHH--HHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIA--RVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA--~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
+.+..+..+-..-+.|+|| =||.-|=--+. ..|+..|++.|-..+++||.+..++...
T Consensus 144 RVAIARALaM~P~vmLFDE-----------PTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 144 RVAIARALAMDPKVMLFDE-----------PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHHHcCCCCEEeecC-----------CcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 3444455566667889999 57777654443 4567888888999999999999888654
No 388
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=53.10 E-value=25 Score=35.52 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=35.1
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......++|+|| --.|-++..-..+ ..++..+.+ +..+|++||..+...
T Consensus 156 rv~laral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~-~~tviivsH~~~~~~ 211 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDE--------PCSALDPISTLAI-EDLINELKQ-DYTIVIVTHNMQQAA 211 (258)
T ss_pred HHHHHHHHhcCCCEEEEcC--------CCccCCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHH
Confidence 3333344455678999999 6666665544444 344444443 578999999987654
No 389
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.01 E-value=25 Score=35.86 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=32.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-++|+|| --.|-++..-..+ +.++..+.+ +..+|++||..+...
T Consensus 177 ral~~~p~lllLDE--------Pt~~LD~~~~~~l-~~~l~~~~~-~~tiii~tH~~~~~~ 227 (268)
T PRK14248 177 RTLAMKPAVLLLDE--------PASALDPISNAKI-EELITELKE-EYSIIIVTHNMQQAL 227 (268)
T ss_pred HHHhCCCCEEEEcC--------CCcccCHHHHHHH-HHHHHHHhc-CCEEEEEEeCHHHHH
Confidence 33445667999999 6666665544444 334444443 578899999987543
No 390
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.89 E-value=26 Score=35.49 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=32.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.......++|+|| --.|-++.--. ..+.++..+.+ +..+|++||..+...-
T Consensus 163 ral~~~p~lllLDE--------Pt~~LD~~~~~-~l~~~l~~~~~-~~tiii~tH~~~~i~~ 214 (259)
T PRK14260 163 RALAIKPKVLLMDE--------PCSALDPIATM-KVEELIHSLRS-ELTIAIVTHNMQQATR 214 (259)
T ss_pred HHHhcCCCEEEEcC--------CCccCCHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence 34455668999999 55555554332 33333444443 5788999999876653
No 391
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=52.84 E-value=23 Score=39.64 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=33.6
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|=++.....| ..++..+.+.+..+|++||+.+...
T Consensus 152 aral~~~p~lllLDE--------Pt~~LD~~~~~~l-~~~l~~~~~~g~tiiiitHd~~~~~ 204 (501)
T PRK11288 152 AKALARNARVIAFDE--------PTSSLSAREIEQL-FRVIRELRAEGRVILYVSHRMEEIF 204 (501)
T ss_pred HHHHHhCCCEEEEcC--------CCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 334455668999999 5445444433222 3444555555789999999987654
No 392
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=52.79 E-value=28 Score=35.94 Aligned_cols=48 Identities=8% Similarity=-0.002 Sum_probs=31.3
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
....++|+|| --.|-++.-...+.. ++..+.+. +..+|++||..+...
T Consensus 171 ~~p~lllLDE--------Pt~~LD~~~~~~l~~-~l~~~~~~~~~tviiisH~~~~~~ 219 (272)
T PRK13547 171 QPPRYLLLDE--------PTAALDLAHQHRLLD-TVRRLARDWNLGVLAIVHDPNLAA 219 (272)
T ss_pred CCCCEEEEcC--------ccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHH
Confidence 3568999999 555555544443333 33444444 788999999987654
No 393
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.43 E-value=26 Score=35.79 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=33.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|-++.--..+ +.++..+.+ +..+|++||..+...
T Consensus 161 aral~~~p~llllDE--------PtsgLD~~~~~~l-~~~l~~~~~-~~tii~isH~~~~i~ 212 (261)
T PRK14263 161 ARAIATEPEVLLLDE--------PCSALDPIATRRV-EELMVELKK-DYTIALVTHNMQQAI 212 (261)
T ss_pred HHHHHcCCCEEEEeC--------CCccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHH
Confidence 344456778999999 6667665544433 333444433 678899999987544
No 394
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=52.33 E-value=28 Score=40.43 Aligned_cols=49 Identities=8% Similarity=-0.068 Sum_probs=36.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.......-|+|||| =|+.-|-.++.| +.++|.+.+..+|++||+.+...
T Consensus 162 ~aL~~~P~lLLLDE-----------Ptn~LD~~~~~~-L~~~L~~~~~tviivsHd~~~l~ 210 (638)
T PRK10636 162 QALICRSDLLLLDE-----------PTNHLDLDAVIW-LEKWLKSYQGTLILISHDRDFLD 210 (638)
T ss_pred HHHccCCCEEEEcC-----------CCCcCCHHHHHH-HHHHHHhCCCeEEEEeCCHHHHH
Confidence 33455667999999 577777777765 55566555778999999987665
No 395
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.11 E-value=28 Score=34.92 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=35.1
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++.-.+.......|+|+|| --.|-++.--..+. .+++.+.+ +..+|++||..+...
T Consensus 156 rv~laral~~~p~llllDE--------P~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~ 211 (252)
T PRK14272 156 RLCIARALAVEPEILLMDE--------PTSALDPASTARIE-DLMTDLKK-VTTIIIVTHNMHQAA 211 (252)
T ss_pred HHHHHHHHhcCCCEEEEeC--------CCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHH
Confidence 3333344455668999999 66666654333333 34444443 678899999988655
No 396
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=52.10 E-value=42 Score=32.69 Aligned_cols=92 Identities=8% Similarity=-0.105 Sum_probs=49.7
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeeccc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEt 380 (577)
..++||-..|||...+.++.-. . +.+ ...+|++... +...+.+.. .......+++|||
T Consensus 41 lll~G~~G~GKT~la~~~~~~~-~--~~~-----------~~~~~i~~~~----~~~~~~~~~---~~~~~~~lLvIDd- 98 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAA-E--ERG-----------KSAIYLPLAE----LAQADPEVL---EGLEQADLVCLDD- 98 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-H--hcC-----------CcEEEEeHHH----HHHhHHHHH---hhcccCCEEEEeC-
Confidence 4578999999999998876432 1 111 1123332221 111111111 1122335899999
Q ss_pred CcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 381 VENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 381 g~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
+.+-....+.......+++.+...+..+|++|..
T Consensus 99 -------i~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 99 -------VEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -------hhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 8876654433334445556665555677777764
No 397
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.95 E-value=22 Score=38.64 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=32.9
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHh
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRL 428 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~ 428 (577)
.+-.+..+...-++|+|| ||+. =+..=...+-.- +..|.+. +..+||.||+.+=+--+
T Consensus 145 VALARAL~~~P~vLLLDE-------PlSa-LD~kLR~~mr~E-lk~lq~~~giT~i~VTHDqeEAl~m 203 (352)
T COG3842 145 VALARALVPEPKVLLLDE-------PLSA-LDAKLREQMRKE-LKELQRELGITFVYVTHDQEEALAM 203 (352)
T ss_pred HHHHHHhhcCcchhhhcC-------cccc-hhHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhh
Confidence 333455667778999999 2321 111111122222 3334444 89999999998765543
No 398
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.83 E-value=31 Score=35.86 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=43.6
Q ss_pred eecc-ceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh---c-C
Q psy13263 338 HFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ---I-G 412 (577)
Q Consensus 338 ~l~~-d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~---~-~ 412 (577)
++++ +..|.+.+. .| ..+..+.+..+.....--++|-|| =|+.-|= .-|.-|+++|.+ . +
T Consensus 134 rvgi~~~A~qra~~-LS--GGQQQRVaIARaL~Q~pkiILADE-----------PvasLDp-~~a~~Vm~~l~~in~~~g 198 (258)
T COG3638 134 RVGILDKAYQRAST-LS--GGQQQRVAIARALVQQPKIILADE-----------PVASLDP-ESAKKVMDILKDINQEDG 198 (258)
T ss_pred HcCcHHHHHHHhcc-CC--cchhHHHHHHHHHhcCCCEEecCC-----------cccccCh-hhHHHHHHHHHHHHHHcC
Confidence 3556 666665443 01 112333333333445557888899 2444443 235566666654 3 7
Q ss_pred CeEEEecchHHHHHH
Q psy13263 413 CLTVFATHYHSVARR 427 (577)
Q Consensus 413 ~~~lfaTHy~eL~~l 427 (577)
..+|+.-|+.+|+.-
T Consensus 199 ~Tvi~nLH~vdlA~~ 213 (258)
T COG3638 199 ITVIVNLHQVDLAKK 213 (258)
T ss_pred CEEEEEechHHHHHH
Confidence 899999999999873
No 399
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=51.71 E-value=27 Score=34.95 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=33.3
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.......|+|+|| --.|-++.....+ +.++..+.+ ++.+|++||..+...
T Consensus 157 ral~~~p~llllDE--------Pt~~LD~~~~~~l-~~~l~~~~~-~~tiiivsH~~~~~~ 207 (247)
T TIGR00972 157 RALAVEPEVLLLDE--------PTSALDPIATGKI-EELIQELKK-KYTIVIVTHNMQQAA 207 (247)
T ss_pred HHHhcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHHh-cCeEEEEecCHHHHH
Confidence 33445668999999 6666665544433 344444544 478899999988554
No 400
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.58 E-value=29 Score=37.02 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=32.4
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+......-++|+|| --.|-++.-+.. ...++..+.+ ++.+|++||.++...-
T Consensus 238 RAl~~~p~IlLLDE--------Pts~LD~~~~~~-i~~~i~~l~~-~~Tii~iTH~l~~i~~ 289 (329)
T PRK14257 238 RAIALEPEVLLMDE--------PTSALDPIATAK-IEELILELKK-KYSIIIVTHSMAQAQR 289 (329)
T ss_pred HHHHhCCCEEEEeC--------CcccCCHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence 34455677999999 555555433333 2223333433 6899999999887653
No 401
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=51.48 E-value=27 Score=35.37 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=33.6
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+..+....++|+|| --.|-+..--. ....++..+.+ +..+|++||..+...
T Consensus 165 v~laral~~~p~lllLDE--------Pt~~LD~~~~~-~l~~~L~~~~~-~~tiii~sH~~~~~~ 219 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDE--------PCSALDPISTG-RIEELITELKQ-DYTVVIVTHNMQQAA 219 (260)
T ss_pred HHHHHHHHCCCCEEEEcC--------CCccCCHHHHH-HHHHHHHHHhc-CCeEEEEeCCHHHHH
Confidence 333344556778999999 55555553322 23334444433 567899999987654
No 402
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=51.42 E-value=27 Score=38.24 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=35.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+..+...-++|+|| --.|-++.....+.-.+.+ |.+. +..+||+||+.+...
T Consensus 177 RALa~~P~ILLlDE--------Pts~LD~~~r~~l~~~L~~-l~~~~~~TII~iTHdl~e~~ 229 (382)
T TIGR03415 177 RAFAMDADILLMDE--------PFSALDPLIRTQLQDELLE-LQAKLNKTIIFVSHDLDEAL 229 (382)
T ss_pred HHHhcCCCEEEEEC--------CCccCCHHHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHH
Confidence 44456778999999 6666666555444444443 3443 789999999988653
No 403
>PRK04195 replication factor C large subunit; Provisional
Probab=51.36 E-value=43 Score=37.52 Aligned_cols=20 Identities=5% Similarity=-0.139 Sum_probs=16.1
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||...|||...+.++.
T Consensus 42 lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999998876643
No 404
>PRK10865 protein disaggregation chaperone; Provisional
Probab=51.27 E-value=1.7e+02 Score=35.53 Aligned_cols=120 Identities=16% Similarity=0.023 Sum_probs=64.9
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccc--hhhhhc----hhhhHHhhhcCCCce
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQ--KKYVLE----VPSKYASKAKSNHQR 373 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~q--StF~~E----m~e~~~il~~a~~~s 373 (577)
..+++||..-|||...+.++.-. . ...||+.-.. ...++.++|.-. ..|..+ +..+..-+.....++
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i-~----~~~vp~~l~~--~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ 273 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRI-I----NGEVPEGLKG--RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNV 273 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHh-h----cCCCchhhCC--CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCe
Confidence 45677999999999988776532 1 2255543221 133344444311 223333 333332223345678
Q ss_pred EEeecccCcccc-cccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCCC
Q psy13263 374 VATKKKNVENYV-TPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPN 433 (577)
Q Consensus 374 LVLlDEtg~n~v-~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~~ 433 (577)
+++||| + +-+|.|.+ +|..=+.-++.-.+.+ ..++|.||...+...+....+.
T Consensus 274 ILfIDE-----ih~l~~~~~~--~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~a 328 (857)
T PRK10865 274 ILFIDE-----LHTMVGAGKA--DGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAA 328 (857)
T ss_pred EEEEec-----HHHhccCCCC--ccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHH
Confidence 999999 2 11234432 2322234444444455 6799999999988666554443
No 405
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=51.00 E-value=21 Score=35.43 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=32.4
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
....++|+|| --.|-++.--..+. ..+..+.+ +..+|++||..++.+++.
T Consensus 179 ~~~~illlDE--------p~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~h~~~~~~~~d 228 (243)
T cd03272 179 DPAPFYLFDE--------IDAALDAQYRTAVA-NMIKELSD-GAQFITTTFRPELLEVAD 228 (243)
T ss_pred CCCCEEEEEC--------CccCCCHHHHHHHH-HHHHHHhC-CCEEEEEecCHHHHhhCC
Confidence 3457999999 66777665443332 23344433 678889999988776554
No 406
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=50.86 E-value=28 Score=35.44 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=32.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| --.|-++..-..+ +.++..+.+ +..+|++||..+...
T Consensus 164 ral~~~p~lllLDE--------Pt~~LD~~~~~~l-~~~L~~~~~-~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 164 RAIAVQPEVILMDE--------PCSALDPISTLRI-EELMHELKE-QYTIIIVTHNMQQAA 214 (264)
T ss_pred HHHhcCCCEEEEeC--------CCccCCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHH
Confidence 34455668999999 6666665554443 334444444 468899999977554
No 407
>PLN03140 ABC transporter G family member; Provisional
Probab=50.72 E-value=26 Score=44.80 Aligned_cols=55 Identities=5% Similarity=0.058 Sum_probs=37.4
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchH--HHHHHhh
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYH--SVARRLR 429 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~--eL~~l~~ 429 (577)
........++++|| .-+|=++.-...|.. ++..+.+ .+..+|++||.. ++.+++.
T Consensus 349 ~aL~~~p~vlllDE--------PTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD 406 (1470)
T PLN03140 349 EMIVGPTKTLFMDE--------ISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFD 406 (1470)
T ss_pred hhhcCCCcEEEEeC--------CCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhh
Confidence 33455678999999 777777666555553 3444554 378899999974 6666655
No 408
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.66 E-value=28 Score=35.39 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=33.7
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|-++.-... ...++..+.. ++.+|++||..+...
T Consensus 173 aral~~~p~llllDE--------Pt~gLD~~~~~~-l~~~l~~l~~-~~tiiivth~~~~~~ 224 (265)
T PRK14252 173 ARALATDPEILLFDE--------PTSALDPIATAS-IEELISDLKN-KVTILIVTHNMQQAA 224 (265)
T ss_pred HHHHHcCCCEEEEeC--------CCccCCHHHHHH-HHHHHHHHHh-CCEEEEEecCHHHHH
Confidence 344455678999999 666666544333 3334444543 578899999987764
No 409
>PLN03232 ABC transporter C family member; Provisional
Probab=50.53 E-value=51 Score=42.34 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=31.7
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARR 427 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l 427 (577)
...++|+|| .|+..|... ...|.+.|.+. +|.+|++||-.+....
T Consensus 1389 ~~~ILILDE-----------ATSaLD~~T-e~~Iq~~L~~~~~~~TvI~IAHRl~ti~~ 1435 (1495)
T PLN03232 1389 RSKILVLDE-----------ATASVDVRT-DSLIQRTIREEFKSCTMLVIAHRLNTIID 1435 (1495)
T ss_pred CCCEEEEEC-----------CcccCCHHH-HHHHHHHHHHHcCCCEEEEEeCCHHHHHh
Confidence 557899999 788888643 33444445443 7999999999866554
No 410
>PRK13695 putative NTPase; Provisional
Probab=50.39 E-value=32 Score=32.61 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=35.9
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH---hhcCCCcccccc
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR---LREEPNVAFEYM 439 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l---~~~~~~V~n~hm 439 (577)
..-+++||| +|. +...+ ..+ ..+++.+++.+..+|+++|...+..+ ...++.+..+++
T Consensus 96 ~~~~lllDE--------~~~-~e~~~-~~~-~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 96 EADVIIIDE--------IGK-MELKS-PKF-VKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred CCCEEEEEC--------CCc-chhhh-HHH-HHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEE
Confidence 446689999 853 33322 223 34555555668899999999766544 344566666555
No 411
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=50.28 E-value=23 Score=39.37 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=33.5
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcC-CeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~-~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| -..|=++..-..+. .++..+.+.+ +.+|++||+.+...
T Consensus 414 ~al~~~p~lllLDE--------Pt~gLD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 414 RALVKHPTLLILDE--------PLQGLDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAP 466 (490)
T ss_pred HHHhcCCCEEEEcC--------ccccCCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhh
Confidence 34455778999999 55665555444443 3344455444 46899999987664
No 412
>CHL00095 clpC Clp protease ATP binding subunit
Probab=50.22 E-value=2.4e+02 Score=34.07 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=61.6
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccc--cchhhhhc----hhhhHHhhhcCCCce
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQK--KQKKYVLE----VPSKYASKAKSNHQR 373 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~--~qStF~~E----m~e~~~il~~a~~~s 373 (577)
..+++||..-|||..-+.++.-. .. .-||..-... ..+..+++. ..+.|..| +..+..-. ....++
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i-~~----~~vp~~l~~~--~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~-~~~~~~ 273 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRI-VN----RDVPDILEDK--LVITLDIGLLLAGTKYRGEFEERLKRIFDEI-QENNNI 273 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHH-Hh----CCCChhhcCC--eEEEeeHHHHhccCCCccHHHHHHHHHHHHH-HhcCCe
Confidence 45688999999999988776532 11 2233321111 111112221 00233333 33332212 124578
Q ss_pred EEeecccCcccc-cccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCCC
Q psy13263 374 VATKKKNVENYV-TPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPN 433 (577)
Q Consensus 374 LVLlDEtg~n~v-~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~~ 433 (577)
+++||| + +-+|.|.+ +|..-+..++.-.+.+ ..++|.+|...+...+....+.
T Consensus 274 ILfiDE-----ih~l~~~g~~--~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~a 328 (821)
T CHL00095 274 ILVIDE-----VHTLIGAGAA--EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPA 328 (821)
T ss_pred EEEEec-----HHHHhcCCCC--CCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHH
Confidence 999999 1 11255532 2322233445444444 6799999999998776655543
No 413
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.19 E-value=25 Score=41.18 Aligned_cols=22 Identities=5% Similarity=-0.176 Sum_probs=18.2
Q ss_pred ccccCCCCCCCchhHHHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIK 322 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~ 322 (577)
.+++||...|||...++++...
T Consensus 113 llL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887543
No 414
>PRK09087 hypothetical protein; Validated
Probab=49.97 E-value=35 Score=34.35 Aligned_cols=80 Identities=8% Similarity=-0.015 Sum_probs=47.7
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeeccc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEt 380 (577)
..|.||..+|||...++++. ..+. .|.... .|..++... +. +.+++||+
T Consensus 47 l~l~G~~GsGKThLl~~~~~------~~~~-------------~~i~~~----~~~~~~~~~---~~----~~~l~iDD- 95 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWRE------KSDA-------------LLIHPN----EIGSDAANA---AA----EGPVLIED- 95 (226)
T ss_pred EEEECCCCCCHHHHHHHHHH------hcCC-------------EEecHH----HcchHHHHh---hh----cCeEEEEC-
Confidence 35789999999999986542 1121 122221 233333221 11 14888999
Q ss_pred CcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 381 VENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 381 g~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
+.....+.+ + ...++.++.+.++.+|++++.
T Consensus 96 -------i~~~~~~~~--~-lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 96 -------IDAGGFDET--G-LFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred -------CCCCCCCHH--H-HHHHHHHHHhCCCeEEEECCC
Confidence 765432322 2 456777888878889998875
No 415
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=49.79 E-value=6.6 Score=40.28 Aligned_cols=85 Identities=12% Similarity=-0.022 Sum_probs=43.7
Q ss_pred CCccccCcccccccCcchhhHHHHHhhCcCc--hh----hhHhhhhHHHhhhhhhhhhhhhhhhhccccC----ccCCcc
Q psy13263 193 PKTLYVPPEFLKKQTPCMGQWWTIKSQNFDC--VL----FFKVGKFYELFHMDAVIGADELACSYMKESG----CTGEST 262 (577)
Q Consensus 193 ~sTl~Ipp~~l~~~TPl~rQ~~~lKa~~~D~--vL----LfrvG~FYElf~~DA~i~a~eLdl~~mkGsn----~~GKSt 262 (577)
+.|+|+.+.. +..+..++.++..+..+. .+ .-++..++..+ ..+......+||.+..+.. ....++
T Consensus 213 ~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l-~~~~~~i~~lD~l~s~a~~a~~~~~~~P~ 288 (308)
T smart00533 213 KNTERFTTPE---LKELENELLEAKEEIERLEKEILRELLEKVLEYLEEL-RALAEALAELDVLLSLATLAAEGNYVRPE 288 (308)
T ss_pred cccceeeCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCcCCe
Confidence 4577777655 344555555555554431 11 22234444433 2333333456666544432 122333
Q ss_pred hhhhhhhhhhccCcccccCccc
Q psy13263 263 LLTQLCNYESQTPSGCFPDMSE 284 (577)
Q Consensus 263 lLk~i~~~~i~i~~GrhPlLe~ 284 (577)
+.. ...+.+.+||||+++.
T Consensus 289 i~~---~~~l~i~~~rHPlle~ 307 (308)
T smart00533 289 FVD---SGELEIKNGRHPVLEL 307 (308)
T ss_pred eCC---CCCEEEeeCCCCcccC
Confidence 332 2358899999999863
No 416
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=49.76 E-value=31 Score=38.43 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=33.8
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
......-++|+|| --.|=++.-...| +.++..+.+.+..+|++||..+...
T Consensus 148 al~~~p~lllLDE--------Pt~~LD~~~~~~l-~~~l~~l~~~g~tvii~tH~~~~~~ 198 (491)
T PRK10982 148 AFSYNAKIVIMDE--------PTSSLTEKEVNHL-FTIIRKLKERGCGIVYISHKMEEIF 198 (491)
T ss_pred HHHhCCCEEEEeC--------CCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHH
Confidence 3445667999999 5555555433333 3445556655788999999987654
No 417
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=49.47 E-value=38 Score=33.18 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=26.6
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
.-++++|| +. +. ..+.++++ ++..+..++.|+|........
T Consensus 75 pd~ii~gE--------ir------d~-e~~~~~l~-~a~~G~~v~~t~Ha~~~~~~~ 115 (198)
T cd01131 75 PDVILVGE--------MR------DL-ETIRLALT-AAETGHLVMSTLHTNSAAKTI 115 (198)
T ss_pred cCEEEEcC--------CC------CH-HHHHHHHH-HHHcCCEEEEEecCCcHHHHH
Confidence 45899999 62 22 23445554 344588899999987665543
No 418
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=48.89 E-value=58 Score=32.35 Aligned_cols=20 Identities=0% Similarity=-0.393 Sum_probs=16.2
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
..+.||...|||.+..+++.
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~ 47 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVY 47 (234)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 35778999999999988853
No 419
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=48.84 E-value=29 Score=39.30 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=32.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhh---HHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCV---IARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~A---LA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
+.......++|+|| .|+.-|... |..++.+.+...++.+|++||..+....+.
T Consensus 462 Ral~~~~~ililDE-----------~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 462 LALAEERDILLLDE-----------WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred HHHhcCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 33445778999999 455555433 323333333223789999999987655443
No 420
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=48.67 E-value=34 Score=38.31 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=33.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
........++|+|| --.|=++.- ....+.++..|.+.+..+|++||+.+...
T Consensus 158 ~al~~~p~lllLDE--------Pt~~LD~~~-~~~l~~~l~~l~~~g~tiiivsHd~~~~~ 209 (510)
T PRK09700 158 KTLMLDAKVIIMDE--------PTSSLTNKE-VDYLFLIMNQLRKEGTAIVYISHKLAEIR 209 (510)
T ss_pred HHHhcCCCEEEEeC--------CCCCCCHHH-HHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 34456678999999 444444432 22333445556555778999999977654
No 421
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.34 E-value=36 Score=36.49 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=88.7
Q ss_pred HhhhhHHHhhhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccccCcccccc-ccccc--------------
Q psy13263 228 KVGKFYELFHMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLK-YFENA-------------- 292 (577)
Q Consensus 228 rvG~FYElf~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~-~~~n~-------------- 292 (577)
++|.|. .|+......-+++-+-|....|||++++.++. .+.-..|+.-+=...+. .-.+-
T Consensus 9 ~lG~~~----l~a~~~~p~~GvTAlFG~SGsGKTslin~IaG-L~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 9 RLGNFA----LDANFTLPARGITALFGPSGSGKTSLINMIAG-LTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred hcCceE----EEEeccCCCCceEEEecCCCCChhhHHHHHhc-cCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 455543 46666555567777778888999999987754 23333333211111110 00111
Q ss_pred ----ccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhc
Q psy13263 293 ----FDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAK 368 (577)
Q Consensus 293 ----F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~ 368 (577)
|-+-.-+..+..|-..+....|++++++++ |..-+..|- .++ .| .|=.+.+.-+..
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLG-I~hLL~R~P----~~L--------SG-------GEkQRVAIGRAL 143 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG-IEHLLDRYP----GTL--------SG-------GEKQRVAIGRAL 143 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhC-cHHHHhhCC----Ccc--------Cc-------chhhHHHHHHHH
Confidence 111111112222322233457888888887 655554332 011 12 244444444555
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecch-HHHHHHhhc
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHY-HSVARRLRE 430 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy-~eL~~l~~~ 430 (577)
-+..-|.|+|| ||..=-.+.-+- -.-.+|.|.+. +.-+++.||- .|+.+++..
T Consensus 144 Lt~P~LLLmDE-------PLaSLD~~RK~E--ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~ 198 (352)
T COG4148 144 LTAPELLLMDE-------PLASLDLPRKRE--ILPYLERLRDEINIPILYVSHSLDEVLRLADR 198 (352)
T ss_pred hcCCCeeeecC-------chhhcccchhhH--HHHHHHHHHHhcCCCEEEEecCHHHHHhhhhe
Confidence 67778999999 333222222221 12346777776 8889999998 567777654
No 422
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=48.32 E-value=32 Score=38.55 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=34.7
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+......-++|+|| --.|=++.....|. .++..|.+.+..+|++||+.+...
T Consensus 155 a~al~~~p~lllLDE--------Pt~~LD~~~~~~l~-~~l~~l~~~~~tvi~~tH~~~~~~ 207 (506)
T PRK13549 155 AKALNKQARLLILDE--------PTASLTESETAVLL-DIIRDLKAHGIACIYISHKLNEVK 207 (506)
T ss_pred HHHHhcCCCEEEEeC--------CCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHH
Confidence 344456677999999 55555554443333 444555555788999999977654
No 423
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=47.88 E-value=36 Score=37.92 Aligned_cols=51 Identities=6% Similarity=-0.048 Sum_probs=33.8
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..+...-++|+|| --.|=++.--..+. .++..|.+.+..+|++||+.+...
T Consensus 405 al~~~p~illLDE--------Pt~gLD~~~~~~~~-~~l~~l~~~~~tvi~vsHd~~~~~ 455 (491)
T PRK10982 405 WLLTQPEILMLDE--------PTRGIDVGAKFEIY-QLIAELAKKDKGIIIISSEMPELL 455 (491)
T ss_pred HHhcCCCEEEEcC--------CCcccChhHHHHHH-HHHHHHHHCCCEEEEECCChHHHH
Confidence 3455678999999 55555554433333 344555666788999999987765
No 424
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.62 E-value=52 Score=41.59 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=36.9
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh----cCCeEEEecchHHHHHHhhcC
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ----IGCLTVFATHYHSVARRLREE 431 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~----~~~~~lfaTHy~eL~~l~~~~ 431 (577)
.....+++||| --.|-++..-..|+.++...+.. .+..+||+||+.+....+...
T Consensus 1221 ~~~~~il~lDE--------Pt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~ 1279 (1311)
T TIGR00606 1221 CLNCGIIALDE--------PTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRS 1279 (1311)
T ss_pred hcCCCEEEeeC--------CcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhc
Confidence 44557899999 55566665555566566554432 256899999998887765543
No 425
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=47.17 E-value=55 Score=36.61 Aligned_cols=98 Identities=9% Similarity=-0.034 Sum_probs=57.0
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhh--------HHhhhcCCCc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSK--------YASKAKSNHQ 372 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~--------~~il~~a~~~ 372 (577)
..|+||...|||..+..++.- +.+... +...+|.... .|..++... ......-..-
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~--l~~~~~----------~~~v~yv~~~----~f~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNY--IESNFS----------DLKVSYMSGD----EFARKAVDILQKTHKEIEQFKNEICQN 207 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHH--HHHhCC----------CCeEEEEEHH----HHHHHHHHHHHHhhhHHHHHHHHhccC
Confidence 447899999999998877652 222110 0112333222 233332211 1111112233
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
-+++||| ++.-.......-....++..+...+..+|+|++..
T Consensus 208 dvLiIDD--------iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 208 DVLIIDD--------VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred CEEEEec--------cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 5889999 88766555556677788888888877888888764
No 426
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=46.74 E-value=43 Score=37.21 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=50.3
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHH-hccccccccceeccceeeecccccchhhhhchhhhH------Hhhh-cCCCc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKE-IQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY------ASKA-KSNHQ 372 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaq-ig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~------~il~-~a~~~ 372 (577)
..+.||...|||...+.++.-. ..+ -+ ...+|+.. +.|..++.... .... ....-
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l--~~~~~~-----------~~v~yi~~----~~f~~~~~~~~~~~~~~~f~~~~~~~~ 195 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYV--VQNEPD-----------LRVMYITS----EKFLNDLVDSMKEGKLNEFREKYRKKV 195 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHH--HHhCCC-----------CeEEEEEH----HHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 4578999999999998887522 211 11 11233322 23444432211 0000 00123
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecc
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATH 420 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTH 420 (577)
.+++||| +....+......-..-++..+.+.+..+|++|+
T Consensus 196 dvLlIDD--------i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 196 DVLLIDD--------VQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred CEEEEec--------hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 5889999 876543322222344567777777767777764
No 427
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=46.59 E-value=34 Score=38.50 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=32.8
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......++|+|| --.|=++..... ...++..|.+. +..+|++||+.+...
T Consensus 168 AraL~~~p~llllDE--------Pt~~LD~~~~~~-l~~~l~~l~~~~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 168 AMALLTRPELLIADE--------PTTALDVSVQAQ-ILQLLRELQQELNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHHhcCCCEEEEcC--------CCCccCHHHHHH-HHHHHHHHHHhcCCeEEEEcCcHHHHH
Confidence 344456778999999 444433332222 22345555554 788999999987654
No 428
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=46.57 E-value=33 Score=39.00 Aligned_cols=55 Identities=7% Similarity=-0.080 Sum_probs=34.7
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
+.......++|+|| --.|=++.--..|..++++.+...+..+|++||..+....+
T Consensus 483 Rall~~~~ililDE--------~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~ 537 (555)
T TIGR01194 483 CAWLEDRPILLFDE--------WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537 (555)
T ss_pred HHHHcCCCEEEEeC--------CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence 33445778999999 44444444433444445554544578999999998765543
No 429
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=46.55 E-value=48 Score=39.14 Aligned_cols=20 Identities=5% Similarity=-0.125 Sum_probs=16.9
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||+..|||...+.++.
T Consensus 490 iLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45779999999999998865
No 430
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=45.71 E-value=36 Score=39.44 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=32.6
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
+......-|+|+|| --.|=++.--..| ..++..|.+. +..+||+||+.++...
T Consensus 476 raL~~~p~llllDE--------Pts~LD~~~~~~i-~~ll~~l~~~~g~tvi~isHdl~~v~~ 529 (623)
T PRK10261 476 RALALNPKVIIADE--------AVSALDVSIRGQI-INLLLDLQRDFGIAYLFISHDMAVVER 529 (623)
T ss_pred HHHhcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44456778999999 4344333322222 2333444444 7889999999887654
No 431
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.51 E-value=26 Score=36.07 Aligned_cols=49 Identities=12% Similarity=0.018 Sum_probs=33.8
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
...++++|| --.|-++..-..+...+.+ +.. ++.+|++||...+..++.
T Consensus 192 ~p~vlllDE--------p~~~Ld~~~~~~l~~~l~~-~~~-~~tii~isH~~~~~~~~d 240 (276)
T cd03241 192 AVPTLIFDE--------IDTGISGEVAQAVGKKLKE-LSR-SHQVLCITHLPQVAAMAD 240 (276)
T ss_pred CCCEEEEEC--------CccCCCHHHHHHHHHHHHH-HhC-CCEEEEEechHHHHHhcC
Confidence 678999999 7777766655544444333 332 678999999998765443
No 432
>PF05729 NACHT: NACHT domain
Probab=45.49 E-value=56 Score=29.50 Aligned_cols=20 Identities=0% Similarity=-0.303 Sum_probs=16.4
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
..|+|+...|||++++.++.
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 35789999999999987764
No 433
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=45.46 E-value=40 Score=36.60 Aligned_cols=97 Identities=9% Similarity=-0.066 Sum_probs=51.2
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhH------HhhhcCCCceE
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY------ASKAKSNHQRV 374 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~------~il~~a~~~sL 374 (577)
..+.||...|||...+.++.-. ..+- | +...+|... +.|+.++.... .....-..-.+
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l--~~~~----~------~~~v~yi~~----~~~~~~~~~~~~~~~~~~~~~~~~~~dl 202 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEI--LENN----P------NAKVVYVSS----EKFTNDFVNALRNNKMEEFKEKYRSVDL 202 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHH--HHhC----C------CCcEEEEEH----HHHHHHHHHHHHcCCHHHHHHHHHhCCE
Confidence 3478999999999998877532 2221 0 012233221 12332221110 00111112358
Q ss_pred EeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 375 ATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 375 VLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
++||| ++.-.....-.....-++.++.+.++.+|+++..
T Consensus 203 LiiDD--------i~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 203 LLIDD--------IQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred EEEeh--------hhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 89999 8765433222234556677777777778888765
No 434
>KOG0744|consensus
Probab=44.73 E-value=43 Score=36.56 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=32.9
Q ss_pred eEEeecccCcccc-------cccccCCCCcchhhHHHHHHHHHHhc-C--CeEEEecch
Q psy13263 373 RVATKKKNVENYV-------TPECRGTGTNDGCVIARVTLEKFLQI-G--CLTVFATHY 421 (577)
Q Consensus 373 sLVLlDEtg~n~v-------~~LGRGTst~DG~ALA~AIlE~L~~~-~--~~~lfaTHy 421 (577)
-.||||| | +..-.|+.|.||+-..-|++-.|-+. + -..|+||-.
T Consensus 252 VfvLIDE-----VESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSN 305 (423)
T KOG0744|consen 252 VFVLIDE-----VESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSN 305 (423)
T ss_pred EEEEeHH-----HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 4579999 4 34667999999999999999888765 2 255566654
No 435
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=44.52 E-value=30 Score=35.75 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=20.6
Q ss_pred hhhhccccCccCCcchhhhhhhhhhccCccc
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYESQTPSGC 278 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~i~i~~Gr 278 (577)
++..+=|+|.+||||++..+.. .+....|+
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG-~l~~t~G~ 62 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAG-DLKPTSGQ 62 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhC-ccccCCce
Confidence 4444558999999999998764 34444444
No 436
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=44.36 E-value=44 Score=37.67 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=31.3
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.....-++|+|| =|+.-|-.+.. .+.+.|.+.+..+|++||+.++..
T Consensus 170 L~~~p~lLlLDE-----------Pt~~LD~~~~~-~l~~~l~~~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 170 LFSNPDILLLDE-----------PTNNLDINTIR-WLEDVLNERNSTMIIISHDRHFLN 216 (530)
T ss_pred HhcCCCEEEEcC-----------CCcccCHHHHH-HHHHHHHhCCCeEEEEeCCHHHHH
Confidence 344567999999 35555544433 344555555788999999988665
No 437
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=44.27 E-value=11 Score=36.77 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+++|||.+|||+++++++
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444455567899999999999998775
No 438
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.22 E-value=42 Score=33.75 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=32.7
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.......|+|+|| --.|-++.--..+ ..+++.+.+ +..+|++||..+...
T Consensus 162 al~~~p~llllDE--------P~~gLD~~~~~~l-~~~l~~~~~-~~tiiivsH~~~~~~ 211 (252)
T PRK14256 162 TIAVKPEVILMDE--------PASALDPISTLKI-EELIEELKE-KYTIIIVTHNMQQAA 211 (252)
T ss_pred HHhcCCCEEEEcC--------CcccCCHHHHHHH-HHHHHHHHh-CCcEEEEECCHHHHH
Confidence 3345667999999 6666665443333 344555554 567899999987654
No 439
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=44.13 E-value=40 Score=39.37 Aligned_cols=50 Identities=12% Similarity=-0.023 Sum_probs=33.5
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
......-++|+|| -|+.-|-.. ...+.+.|.+.+..+|++||..++...+
T Consensus 596 al~~~p~illLDE-----------pts~LD~~~-~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 596 LFYHKPQFAILDE-----------CTSAVSVDV-EGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred HHHcCCCEEEEeC-----------CccCCCHHH-HHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 3344678999999 455555432 2334455555588999999999876543
No 440
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=44.04 E-value=11 Score=36.55 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=22.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555555567899999999999998775
No 441
>CHL00195 ycf46 Ycf46; Provisional
Probab=43.94 E-value=60 Score=36.83 Aligned_cols=21 Identities=0% Similarity=-0.228 Sum_probs=17.2
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..++.||...|||.+-+.++.
T Consensus 261 GILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 345779999999999988864
No 442
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=43.68 E-value=11 Score=36.71 Aligned_cols=28 Identities=4% Similarity=-0.007 Sum_probs=21.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444444567899999999999998775
No 443
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=43.43 E-value=47 Score=37.79 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=33.6
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
+........++|+|| =|+.-|-.+..+ +.+.|.+.+..+|++||+.++..-.
T Consensus 175 a~al~~~p~vlLLDE-----------Pt~~LD~~~~~~-l~~~L~~~~~tviiisHd~~~~~~~ 226 (556)
T PRK11819 175 CRLLLEKPDMLLLDE-----------PTNHLDAESVAW-LEQFLHDYPGTVVAVTHDRYFLDNV 226 (556)
T ss_pred HHHHhCCCCEEEEcC-----------CCCcCChHHHHH-HHHHHHhCCCeEEEEeCCHHHHHhh
Confidence 344456667999999 355555444443 3444544456889999999877643
No 444
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=43.43 E-value=77 Score=32.16 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=28.1
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHH-HHhh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVA-RRLR 429 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~-~l~~ 429 (577)
..+-+.|+|| -...-+|.=..-. .+++..|.. ++-.+|+.||..+=+ .++.
T Consensus 146 R~~PilLLDE--------PFsALdP~LR~eM-l~Lv~~l~~E~~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 146 REQPILLLDE--------PFSALDPALRAEM-LALVSQLCDERKMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred ccCCeEEecC--------chhhcCHHHHHHH-HHHHHHHHHhhCCEEEEEeCCHHHHHHhhh
Confidence 4567789999 3433333222111 133344443 378899999996533 3443
No 445
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=43.25 E-value=33 Score=27.95 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=21.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy13263 471 NVAELAGIPEDVVKFGTTVAFQMEARH 497 (577)
Q Consensus 471 ~vArlaGlP~~VI~rA~ei~~~le~~~ 497 (577)
.+|..+|||..|.++|.+++.......
T Consensus 3 r~~~~L~L~~~v~~~A~~i~~~~~~~~ 29 (71)
T PF00382_consen 3 RICSKLGLPEDVRERAKEIYKKAQERG 29 (71)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHcCCCHHHHHHHHHHHHHHHHcC
Confidence 478889999999999999999976654
No 446
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=43.13 E-value=46 Score=38.60 Aligned_cols=49 Identities=18% Similarity=0.067 Sum_probs=34.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.......-|+|+|| =|+.-|-.+..| +.++|...+..+|++||+.+...
T Consensus 169 raL~~~P~lLLLDE-----------Pt~~LD~~~~~~-L~~~L~~~~~tvlivsHd~~~l~ 217 (635)
T PRK11147 169 RALVSNPDVLLLDE-----------PTNHLDIETIEW-LEGFLKTFQGSIIFISHDRSFIR 217 (635)
T ss_pred HHHhcCCCEEEEcC-----------CCCccCHHHHHH-HHHHHHhCCCEEEEEeCCHHHHH
Confidence 34455668999999 466666655543 44555555668999999987665
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=42.89 E-value=47 Score=34.99 Aligned_cols=21 Identities=0% Similarity=-0.244 Sum_probs=16.9
Q ss_pred ccccccCCCCCCCchhHHHHH
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~va 319 (577)
...+|+||+.+|||++++.+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 345788999999999998653
No 448
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.72 E-value=41 Score=34.61 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=32.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| --.|-+..-...|. .++..+.+ ++.+|++||..+...
T Consensus 176 ral~~~p~lllLDE--------Pt~~LD~~~~~~l~-~~L~~~~~-~~tiiivsH~~~~~~ 226 (276)
T PRK14271 176 RTLAVNPEVLLLDE--------PTSALDPTTTEKIE-EFIRSLAD-RLTVIIVTHNLAQAA 226 (276)
T ss_pred HHHhcCCCEEEEcC--------CcccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 33344567999999 66666654433333 33444443 578999999987654
No 449
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.71 E-value=12 Score=36.64 Aligned_cols=28 Identities=4% Similarity=-0.020 Sum_probs=21.8
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555555567899999999999998764
No 450
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=41.93 E-value=12 Score=37.10 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=22.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444555678999999999999987753
No 451
>PTZ00243 ABC transporter; Provisional
Probab=41.90 E-value=92 Score=40.31 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=22.4
Q ss_pred ccccccccccccCCCCCCCchhHHHHHHH
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~valI 321 (577)
|......+.+|+|+..+|||+..+.+..+
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl 1359 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRM 1359 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44455667789999999999999887443
No 452
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=41.70 E-value=12 Score=36.63 Aligned_cols=29 Identities=0% Similarity=-0.047 Sum_probs=22.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444555678999999999999988753
No 453
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=41.69 E-value=12 Score=36.14 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=21.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4444455567899999999999998764
No 454
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=41.52 E-value=55 Score=36.05 Aligned_cols=21 Identities=5% Similarity=-0.119 Sum_probs=17.2
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..++.||...|||.+.+.++.
T Consensus 181 gvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 345779999999999988764
No 455
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=41.44 E-value=12 Score=36.53 Aligned_cols=29 Identities=3% Similarity=0.071 Sum_probs=22.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 34444555678999999999999987753
No 456
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=41.34 E-value=46 Score=38.58 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=33.4
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVA 425 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~ 425 (577)
+.......|+|+|| --.|=++... ...+.++..|.+. +..+|++||+.+..
T Consensus 181 ~AL~~~P~lLllDE--------Pt~~LD~~~~-~~l~~ll~~l~~~~g~tvi~itHdl~~~ 232 (623)
T PRK10261 181 MALSCRPAVLIADE--------PTTALDVTIQ-AQILQLIKVLQKEMSMGVIFITHDMGVV 232 (623)
T ss_pred HHHhCCCCEEEEeC--------CCCccCHHHH-HHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 44456667999999 4444443322 2334466677655 88999999998764
No 457
>PRK01156 chromosome segregation protein; Provisional
Probab=41.27 E-value=46 Score=40.04 Aligned_cols=53 Identities=4% Similarity=-0.013 Sum_probs=34.1
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcC--CeEEEecchHHHHHHhh
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIG--CLTVFATHYHSVARRLR 429 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~--~~~lfaTHy~eL~~l~~ 429 (577)
+....++++|| -..|.++..-..++-.+-..+...+ ..+||+||.+++...+.
T Consensus 823 ~~~~~~lilDE--------pt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 823 NNDKSLLIMDE--------PTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccCCCeEEEeC--------CCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 34557899999 6666666555555444433444433 36899999999876543
No 458
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=41.26 E-value=13 Score=36.76 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=23.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI 321 (577)
+|........+++|||.+|||+.+++++-+
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344445556789999999999999988754
No 459
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.25 E-value=13 Score=36.18 Aligned_cols=28 Identities=4% Similarity=-0.078 Sum_probs=22.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555567899999999999998765
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=41.18 E-value=53 Score=37.27 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=33.9
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+......-++|+|| =|+.-|-.+..+ +.+.|.+.+..+|++||..++..-
T Consensus 173 a~al~~~p~lLLLDE-----------Pt~~LD~~~~~~-l~~~L~~~~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 173 CRLLLSKPDMLLLDE-----------PTNHLDAESVAW-LEQHLQEYPGTVVAVTHDRYFLDN 223 (552)
T ss_pred HHHHhcCCCEEEEcC-----------CCCCCChHHHHH-HHHHHHhCCCeEEEEeCCHHHHHh
Confidence 344456678999999 355556544442 445555556689999999887664
No 461
>PRK13409 putative ATPase RIL; Provisional
Probab=41.07 E-value=45 Score=38.57 Aligned_cols=52 Identities=8% Similarity=-0.024 Sum_probs=35.2
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.......-++|+|| --.|=++.....+ +.++..|.+ +..+|++||+.+....
T Consensus 225 ~al~~~p~lllLDE--------Pts~LD~~~~~~l-~~~i~~l~~-g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 225 AALLRDADFYFFDE--------PTSYLDIRQRLNV-ARLIRELAE-GKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHhcCCCEEEEEC--------CCCCCCHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 33445667999999 5555555444334 345566777 8899999999887653
No 462
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=40.97 E-value=13 Score=35.76 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=21.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444455567899999999999998765
No 463
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=40.81 E-value=48 Score=37.07 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=32.8
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+......-|+|+|| --.|=++.--. ..+.++..+.+.+..+|++||+.+...
T Consensus 154 ~al~~~p~lllLDE--------Pt~~LD~~~~~-~l~~~l~~l~~~~~tvii~sHd~~~~~ 205 (501)
T PRK10762 154 KVLSFESKVIIMDE--------PTDALTDTETE-SLFRVIRELKSQGRGIVYISHRLKEIF 205 (501)
T ss_pred HHHhcCCCEEEEeC--------CcCCCCHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 34456778999999 43444433222 233345566555778999999977654
No 464
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=40.81 E-value=44 Score=40.92 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=36.2
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.|+|+|| --.|-++.+-..|.. ++..|.+.+..+|++||+.++...
T Consensus 853 ~llILDE--------PtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~~~~i~~ 898 (943)
T PRK00349 853 TLYILDE--------PTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHNLDVIKT 898 (943)
T ss_pred eEEEEEC--------CCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHh
Confidence 7999999 888888887666554 455566668899999999987653
No 465
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=40.69 E-value=2.2e+02 Score=34.54 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=16.4
Q ss_pred cccCCCCCCCchhHHHHHHH
Q psy13263 302 GNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~valI 321 (577)
++.||...||+..-++++..
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARS 60 (824)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 46799999999998888653
No 466
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.42 E-value=13 Score=36.16 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=21.9
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4455555567899999999999998875
No 467
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=40.37 E-value=13 Score=38.69 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=18.2
Q ss_pred cccccccccCCCCCCCchhHHHH
Q psy13263 296 KEASSAGNIIPKAGVDKEYDEVM 318 (577)
Q Consensus 296 ~~a~~~~I~gPN~gGKsvy~k~v 318 (577)
......+|+|||.+|||+.+|++
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~i 50 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAI 50 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 33344679999999999999876
No 468
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.35 E-value=13 Score=36.21 Aligned_cols=29 Identities=3% Similarity=0.055 Sum_probs=22.2
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+++|||.+|||+++++++-
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44444555678999999999999987753
No 469
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=40.30 E-value=13 Score=36.62 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 34445555678999999999999988754
No 470
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.27 E-value=13 Score=36.53 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 4444455567899999999999998775
No 471
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=40.23 E-value=13 Score=36.48 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444455567899999999999998775
No 472
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=40.04 E-value=13 Score=36.08 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=21.8
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34444455678999999999999987753
No 473
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=40.03 E-value=13 Score=36.16 Aligned_cols=28 Identities=4% Similarity=-0.075 Sum_probs=21.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+++|||.+|||+++++++
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444455567899999999999998764
No 474
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=39.83 E-value=10 Score=34.00 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=19.8
Q ss_pred cccccccccccCCCCCCCchhHHHHH
Q psy13263 294 DHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 294 ~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
........+|+|||.+|||+++++++
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHT
T ss_pred EEcCCCEEEEEccCCCccccceeeec
Confidence 33344456799999999999998764
No 475
>PRK03918 chromosome segregation protein; Provisional
Probab=39.80 E-value=48 Score=39.55 Aligned_cols=50 Identities=4% Similarity=-0.005 Sum_probs=33.5
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
....++|+|| ...|-++.....|.-++. .+...+..+|++||+.++...+
T Consensus 811 ~~~~~lilDE--------p~~~lD~~~~~~l~~~l~-~~~~~~~~iiiith~~~~~~~~ 860 (880)
T PRK03918 811 GNIPLLILDE--------PTPFLDEERRRKLVDIME-RYLRKIPQVIIVSHDEELKDAA 860 (880)
T ss_pred CCCCeEEEeC--------CCcccCHHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHhC
Confidence 4457889999 666666655444554443 4444467899999999876543
No 476
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=39.76 E-value=62 Score=37.75 Aligned_cols=59 Identities=5% Similarity=-0.086 Sum_probs=38.6
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhc
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~ 430 (577)
.+++..+..-.....|+||| -|+.-|.-. ...+.+-|.+. ++.+|-+.|=..|..+...
T Consensus 522 QRlafARilL~kP~~v~LDE-----------ATsALDe~~-e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 522 QRLAFARLLLHKPKWVFLDE-----------ATSALDEET-EDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred HHHHHHHHHHcCCCEEEEec-----------chhccChHH-HHHHHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 34444444455678999999 666666532 23444455553 7899999999988877654
No 477
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=39.63 E-value=57 Score=40.66 Aligned_cols=25 Identities=8% Similarity=-0.101 Sum_probs=19.9
Q ss_pred ccccccccccCCCCCCCchhHHHHH
Q psy13263 295 HKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 295 ~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
....+..+|.||+..|||+..+.+.
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~ 228 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALF 228 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHH
Confidence 3345567899999999999998874
No 478
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=39.60 E-value=14 Score=36.02 Aligned_cols=29 Identities=3% Similarity=-0.074 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444455567999999999999987753
No 479
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=39.41 E-value=14 Score=35.95 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=22.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45555555677999999999999988753
No 480
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=39.27 E-value=14 Score=36.21 Aligned_cols=29 Identities=3% Similarity=-0.021 Sum_probs=22.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45555555678999999999999987753
No 481
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=39.03 E-value=14 Score=36.35 Aligned_cols=29 Identities=7% Similarity=-0.078 Sum_probs=22.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 45555555678999999999999987753
No 482
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=38.92 E-value=15 Score=36.54 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=21.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444445567899999999999998764
No 483
>KOG0927|consensus
Probab=38.92 E-value=50 Score=38.10 Aligned_cols=56 Identities=7% Similarity=-0.121 Sum_probs=34.4
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH-HhhcCCCccccc
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR-RLREEPNVAFEY 438 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~-l~~~~~~V~n~h 438 (577)
...|+|||| --.|-+..-=. ++.++|.+..--+++++|+.-|.. .+...+-|.++.
T Consensus 527 qP~lLlLDE--------PtnhLDi~tid----~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 527 QPHLLLLDE--------PTNHLDIETID----ALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred CCcEEEecC--------CCcCCCchhHH----HHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCc
Confidence 567899999 33333332222 445566666567888999987766 455555555543
No 484
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=38.80 E-value=61 Score=37.30 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=44.8
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc----CCeEEEecchHHHHHHhhc
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI----GCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~----~~~~lfaTHy~eL~~l~~~ 430 (577)
+++..+..+...-+++.|| -|+.-| .++...|++.|.+. +...||.||+..+.+....
T Consensus 437 RvaIARALa~~P~lli~DE-----------p~SaLD-vsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 437 RVAIARALALEPKLLILDE-----------PVSALD-VSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred HHHHHHHHhcCCCEEEecC-----------CccccC-HHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc
Confidence 3444556677888999999 577777 47778888877764 8899999999999886653
No 485
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=38.70 E-value=14 Score=36.12 Aligned_cols=29 Identities=3% Similarity=0.059 Sum_probs=22.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAG 46 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45555556678999999999999998754
No 486
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=38.63 E-value=14 Score=36.69 Aligned_cols=29 Identities=3% Similarity=0.047 Sum_probs=22.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+++|||.+|||+++++++-
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45555555678999999999999987753
No 487
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=38.61 E-value=14 Score=36.29 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=22.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444555678999999999999987764
No 488
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=38.60 E-value=15 Score=36.34 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45555555678999999999999987753
No 489
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=38.42 E-value=31 Score=33.93 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=28.3
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHS 423 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~e 423 (577)
.-|++||| .+||...++..|+.+..+++|||=-|.
T Consensus 91 ~DlliVDE-----------------AAaIp~p~L~~ll~~~~~vv~stTi~G 125 (177)
T PF05127_consen 91 ADLLIVDE-----------------AAAIPLPLLKQLLRRFPRVVFSTTIHG 125 (177)
T ss_dssp -SCEEECT-----------------GGGS-HHHHHHHHCCSSEEEEEEEBSS
T ss_pred CCEEEEec-----------------hhcCCHHHHHHHHhhCCEEEEEeeccc
Confidence 47899997 679999999999988889999886653
No 490
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.41 E-value=15 Score=35.97 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|...+....+|+|||.+|||+++++++-
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45555556678999999999999987653
No 491
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=38.38 E-value=14 Score=36.44 Aligned_cols=29 Identities=0% Similarity=-0.120 Sum_probs=22.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45555556678999999999999987653
No 492
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=38.31 E-value=14 Score=36.16 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=21.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|+.......+|+|||.+|||+++++++
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 3444455567899999999999998764
No 493
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.23 E-value=15 Score=36.42 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=22.2
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45555555678999999999999987753
No 494
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.23 E-value=15 Score=36.69 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=22.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.+++++-
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44444555678999999999999987753
No 495
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.00 E-value=15 Score=36.22 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=22.2
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444555678999999999999988753
No 496
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=37.82 E-value=15 Score=36.04 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 4444455567899999999999998765
No 497
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.77 E-value=1.3e+02 Score=33.65 Aligned_cols=160 Identities=10% Similarity=0.017 Sum_probs=78.5
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHH---hccccccccceeccceeeecccccchhhhhch-----------hhhHH
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMDEIKSIEKE---IQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEV-----------PSKYA 364 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~valI~~imaq---ig~~VpA~~a~l~~d~if~~iG~~qStF~~Em-----------~e~~~ 364 (577)
...+++|||..|||+.++.++... ++.+ -+.++.+...+++. ..|-.+..++ .+...
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~riga--------lEQL~~~a~ilGvp~~~v~~~~dl~~ 262 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGG--------HEQLRIYGKLLGVSVRSIKDIADLQL 262 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhH--------HHHHHHHHHHcCCceecCCCHHHHHH
Confidence 456788999999999998877543 2211 11122222222222 1111111111 01112
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--C---CeEEEec-chHHHHHHhhcCCCccccc
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--G---CLTVFAT-HYHSVARRLREEPNVAFEY 438 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~---~~~lfaT-Hy~eL~~l~~~~~~V~n~h 438 (577)
.+......-+||||. .||. ..+.. -..-+..|... . .+||=+| ++..+.+....+..+...
T Consensus 263 al~~l~~~d~VLIDT--------aGrs--qrd~~--~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~- 329 (420)
T PRK14721 263 MLHELRGKHMVLIDT--------VGMS--QRDQM--LAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIH- 329 (420)
T ss_pred HHHHhcCCCEEEecC--------CCCC--cchHH--HHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 233344567899999 6554 43321 12233444332 1 2444444 777787777655433322
Q ss_pred ceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy13263 439 MSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495 (577)
Q Consensus 439 m~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~ 495 (577)
.+.|| | .++.+.-.-.++++...++|-..+...+.+-+.++.
T Consensus 330 -------------~~I~T-K-lDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~ 371 (420)
T PRK14721 330 -------------GCIIT-K-VDEAASLGIALDAVIRRKLVLHYVTNGQKVPEDLHE 371 (420)
T ss_pred -------------EEEEE-e-eeCCCCccHHHHHHHHhCCCEEEEECCCCchhhhhh
Confidence 22222 1 123344455577777777776666555555444443
No 498
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=37.70 E-value=14 Score=36.77 Aligned_cols=29 Identities=3% Similarity=-0.095 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+++++++-
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 45555555678999999999999987753
No 499
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=37.63 E-value=15 Score=36.51 Aligned_cols=27 Identities=4% Similarity=-0.079 Sum_probs=20.8
Q ss_pred ccccccccccccCCCCCCCchhHHHHH
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
|........+|+|||.+|||+++++++
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444444556899999999999998775
No 500
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=37.42 E-value=15 Score=35.87 Aligned_cols=28 Identities=4% Similarity=-0.015 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Done!