Query psy13263
Match_columns 577
No_of_seqs 412 out of 2490
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:19:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8b_B DNA mismatch repair pro 100.0 2.9E-49 9.8E-54 463.1 13.9 221 300-531 791-1021(1022)
2 3thx_B DNA mismatch repair pro 100.0 4.7E-37 1.6E-41 356.0 16.7 245 271-531 640-912 (918)
3 3thx_A DNA mismatch repair pro 100.0 2.5E-36 8.4E-41 350.7 19.0 255 270-538 630-917 (934)
4 1wb9_A DNA mismatch repair pro 100.0 5E-35 1.7E-39 335.5 16.3 213 270-496 576-799 (800)
5 1ewq_A DNA mismatch repair pro 100.0 8.3E-34 2.8E-38 324.0 15.1 209 270-495 549-764 (765)
6 1ewq_A DNA mismatch repair pro 98.7 1.2E-09 4E-14 125.3 -2.0 50 205-254 12-61 (765)
7 3thx_B DNA mismatch repair pro 98.6 2.2E-09 7.6E-14 125.1 -2.0 51 204-254 11-61 (918)
8 1wb9_A DNA mismatch repair pro 98.6 3.1E-09 1.1E-13 122.4 -0.8 52 204-255 8-59 (800)
9 3ec2_A DNA replication protein 96.4 0.0055 1.9E-07 56.4 6.9 105 293-422 33-143 (180)
10 3thx_A DNA mismatch repair pro 95.9 0.00029 1E-08 82.5 -5.4 48 204-251 14-61 (934)
11 4gp7_A Metallophosphoesterase; 94.9 0.039 1.3E-06 50.8 6.3 21 297-317 8-28 (171)
12 1ye8_A Protein THEP1, hypothet 94.8 0.043 1.5E-06 51.4 6.5 59 369-437 97-158 (178)
13 4g1u_C Hemin import ATP-bindin 94.2 0.094 3.2E-06 52.4 7.7 48 371-427 165-213 (266)
14 2ehv_A Hypothetical protein PH 93.8 0.025 8.7E-07 53.8 2.6 48 370-425 134-185 (251)
15 1vpl_A ABC transporter, ATP-bi 92.9 0.11 3.8E-06 51.6 5.7 56 362-426 155-210 (256)
16 3fvq_A Fe(3+) IONS import ATP- 92.8 0.28 9.4E-06 51.5 8.7 59 361-427 146-204 (359)
17 2onk_A Molybdate/tungstate ABC 92.8 0.36 1.2E-05 47.4 9.1 57 361-426 134-191 (240)
18 2kjq_A DNAA-related protein; s 92.7 0.18 6.1E-06 45.7 6.3 85 301-421 39-124 (149)
19 3tui_C Methionine import ATP-b 92.6 0.35 1.2E-05 51.0 9.1 53 366-427 176-229 (366)
20 1sgw_A Putative ABC transporte 92.5 0.13 4.5E-06 49.8 5.4 56 361-425 141-196 (214)
21 1mv5_A LMRA, multidrug resista 92.3 0.51 1.7E-05 46.1 9.4 52 366-427 152-203 (243)
22 1z47_A CYSA, putative ABC-tran 91.8 0.44 1.5E-05 49.9 8.8 30 292-321 35-64 (355)
23 3rlf_A Maltose/maltodextrin im 91.5 0.34 1.1E-05 51.3 7.6 30 292-321 23-52 (381)
24 2yyz_A Sugar ABC transporter, 91.4 0.53 1.8E-05 49.3 8.9 30 292-321 23-52 (359)
25 2yz2_A Putative ABC transporte 91.2 0.42 1.4E-05 47.5 7.6 57 361-426 146-202 (266)
26 1v43_A Sugar-binding transport 91.2 0.53 1.8E-05 49.5 8.7 30 292-321 31-60 (372)
27 2w0m_A SSO2452; RECA, SSPF, un 90.7 0.19 6.3E-06 46.9 4.2 23 300-322 25-47 (235)
28 3gfo_A Cobalt import ATP-bindi 90.2 0.49 1.7E-05 47.5 7.0 57 361-426 151-208 (275)
29 4a74_A DNA repair and recombin 89.5 0.34 1.2E-05 45.3 4.9 22 300-321 27-48 (231)
30 2cbz_A Multidrug resistance-as 87.9 0.089 3E-06 51.5 -0.4 21 249-269 33-53 (237)
31 2it1_A 362AA long hypothetical 87.7 0.59 2E-05 49.0 5.8 57 361-426 141-198 (362)
32 3ux8_A Excinuclease ABC, A sub 87.7 0.71 2.4E-05 51.7 6.8 47 371-426 564-610 (670)
33 2iw3_A Elongation factor 3A; a 87.6 1.1 3.6E-05 53.0 8.4 28 292-319 455-482 (986)
34 1g29_1 MALK, maltose transport 87.5 0.52 1.8E-05 49.5 5.2 56 362-426 148-204 (372)
35 3bk7_A ABC transporter ATP-bin 87.3 2.1 7.1E-05 47.8 10.2 62 358-428 476-538 (607)
36 2pjz_A Hypothetical protein ST 87.1 1.8 6.1E-05 43.1 8.6 49 365-425 140-188 (263)
37 3bos_A Putative DNA replicatio 85.9 1.9 6.4E-05 40.0 7.6 92 301-421 55-147 (242)
38 1nlf_A Regulatory protein REPA 84.7 0.72 2.5E-05 45.4 4.3 47 371-425 133-184 (279)
39 2z4s_A Chromosomal replication 84.3 1.3 4.5E-05 47.1 6.4 97 300-421 132-236 (440)
40 3nh6_A ATP-binding cassette SU 84.0 1 3.4E-05 46.1 5.1 29 292-320 74-102 (306)
41 3qf4_B Uncharacterized ABC tra 83.0 1.3 4.3E-05 49.1 5.8 27 293-319 376-402 (598)
42 2pcj_A ABC transporter, lipopr 82.4 1.7 5.7E-05 41.9 5.8 57 361-426 148-204 (224)
43 3tif_A Uncharacterized ABC tra 82.4 1.3 4.6E-05 43.0 5.1 58 361-427 153-211 (235)
44 2cvh_A DNA repair and recombin 82.1 2.2 7.4E-05 39.4 6.3 20 301-320 23-42 (220)
45 2w58_A DNAI, primosome compone 81.4 1.3 4.6E-05 40.8 4.5 47 373-427 117-166 (202)
46 1jbk_A CLPB protein; beta barr 80.0 1.8 6E-05 38.3 4.6 112 301-428 46-167 (195)
47 2pt7_A CAG-ALFA; ATPase, prote 79.7 1.8 6.2E-05 44.3 5.2 23 297-319 170-192 (330)
48 1n0w_A DNA repair protein RAD5 79.6 4.5 0.00015 37.9 7.6 20 301-320 27-46 (243)
49 3jvv_A Twitching mobility prot 79.6 3.6 0.00012 42.8 7.5 107 300-429 125-238 (356)
50 2eyu_A Twitching motility prot 79.5 3.7 0.00013 40.6 7.3 22 300-321 27-48 (261)
51 4aby_A DNA repair protein RECN 79.2 2.2 7.6E-05 44.1 5.8 95 373-490 317-413 (415)
52 2i3b_A HCR-ntpase, human cance 79.1 3.9 0.00013 38.5 7.0 22 301-322 4-25 (189)
53 1ji0_A ABC transporter; ATP bi 77.7 3.2 0.00011 40.4 6.1 59 362-429 148-207 (240)
54 2olj_A Amino acid ABC transpor 76.7 3.6 0.00012 40.8 6.3 56 362-426 168-223 (263)
55 2qgz_A Helicase loader, putati 75.3 2.2 7.5E-05 43.1 4.3 41 373-421 216-257 (308)
56 1b0u_A Histidine permease; ABC 74.8 3.4 0.00012 40.8 5.5 53 365-426 165-217 (262)
57 2zr9_A Protein RECA, recombina 74.5 4.4 0.00015 41.9 6.4 21 300-320 63-83 (349)
58 2nq2_C Hypothetical ABC transp 72.1 4.4 0.00015 39.9 5.4 53 365-426 140-193 (253)
59 2npi_A Protein CLP1; CLP1-PCF1 72.0 1.4 4.9E-05 47.5 2.0 26 297-322 137-162 (460)
60 4ad8_A DNA repair protein RECN 71.7 6.6 0.00022 42.4 7.2 95 373-490 419-515 (517)
61 1l8q_A Chromosomal replication 71.6 5 0.00017 39.9 5.9 99 301-421 40-140 (324)
62 2ixe_A Antigen peptide transpo 70.1 3.3 0.00011 41.2 4.1 58 360-426 163-221 (271)
63 1fnn_A CDC6P, cell division co 69.5 2.7 9.4E-05 42.2 3.4 21 300-320 46-66 (389)
64 2p65_A Hypothetical protein PF 68.5 8.1 0.00028 34.0 6.0 113 301-428 46-168 (187)
65 4b4t_L 26S protease subunit RP 68.0 6.3 0.00022 42.3 6.0 21 300-320 217-237 (437)
66 1pzn_A RAD51, DNA repair and r 67.9 5.1 0.00017 41.2 5.1 23 299-321 132-154 (349)
67 3syl_A Protein CBBX; photosynt 67.7 14 0.00047 36.0 8.0 118 301-434 70-191 (309)
68 2v1u_A Cell division control p 66.5 4.9 0.00017 40.1 4.5 21 300-320 46-66 (387)
69 1oxx_K GLCV, glucose, ABC tran 66.5 9.7 0.00033 39.5 6.9 57 361-426 148-205 (353)
70 2ff7_A Alpha-hemolysin translo 65.3 6 0.00021 38.7 4.8 55 361-425 153-207 (247)
71 2qby_A CDC6 homolog 1, cell di 65.3 3.1 0.0001 41.5 2.7 22 300-321 47-68 (386)
72 2d2e_A SUFC protein; ABC-ATPas 63.5 3.2 0.00011 40.6 2.4 51 367-426 157-207 (250)
73 2qi9_C Vitamin B12 import ATP- 62.8 5.5 0.00019 39.1 4.0 44 374-426 154-197 (249)
74 4b4t_J 26S protease regulatory 62.8 10 0.00035 40.3 6.4 109 301-432 185-307 (405)
75 3d31_A Sulfate/molybdate ABC t 61.9 12 0.00039 38.9 6.4 57 361-426 135-192 (348)
76 1f2t_B RAD50 ABC-ATPase; DNA d 61.9 4.5 0.00015 36.7 2.9 46 370-426 80-127 (148)
77 2ewv_A Twitching motility prot 61.8 15 0.00052 38.0 7.4 22 300-321 138-159 (372)
78 3j16_B RLI1P; ribosome recycli 61.2 11 0.00036 42.2 6.3 53 367-428 481-534 (608)
79 3b85_A Phosphate starvation-in 60.5 3.9 0.00013 39.1 2.4 28 249-278 24-51 (208)
80 1g6h_A High-affinity branched- 57.1 6.8 0.00023 38.4 3.5 51 366-425 166-216 (257)
81 2pze_A Cystic fibrosis transme 57.1 3 0.0001 40.3 0.9 21 249-269 36-56 (229)
82 3ux8_A Excinuclease ABC, A sub 56.9 13 0.00045 41.4 6.2 46 373-427 224-269 (670)
83 3ozx_A RNAse L inhibitor; ATP 56.4 12 0.00041 41.0 5.7 52 368-428 400-452 (538)
84 1sxj_E Activator 1 40 kDa subu 56.4 12 0.00042 37.2 5.4 20 301-320 39-58 (354)
85 3qf7_A RAD50; ABC-ATPase, ATPa 56.3 6.6 0.00023 40.6 3.4 46 370-426 302-349 (365)
86 1qvr_A CLPB protein; coiled co 56.2 19 0.00066 41.3 7.6 112 300-426 193-313 (854)
87 4b4t_H 26S protease regulatory 56.1 15 0.00052 39.8 6.3 21 300-320 245-265 (467)
88 3t15_A Ribulose bisphosphate c 56.1 16 0.00054 36.3 6.1 19 302-320 40-58 (293)
89 3qkt_A DNA double-strand break 55.4 8 0.00027 39.3 3.8 51 368-427 269-319 (339)
90 2orv_A Thymidine kinase; TP4A 54.1 7.4 0.00025 38.5 3.2 37 370-421 89-125 (234)
91 2bbs_A Cystic fibrosis transme 53.4 3.8 0.00013 41.3 1.0 51 365-427 171-224 (290)
92 2ce7_A Cell division protein F 53.0 13 0.00046 40.1 5.3 20 301-320 52-71 (476)
93 1sxj_D Activator 1 41 kDa subu 52.6 30 0.001 34.1 7.5 21 301-321 61-81 (353)
94 1cr0_A DNA primase/helicase; R 52.3 13 0.00045 36.4 4.7 23 248-270 36-58 (296)
95 2ghi_A Transport protein; mult 52.2 8.7 0.0003 37.8 3.4 50 366-425 168-217 (260)
96 1yqt_A RNAse L inhibitor; ATP- 51.1 17 0.00059 39.6 5.9 51 368-427 416-467 (538)
97 2zu0_C Probable ATP-dependent 50.8 4.9 0.00017 39.8 1.3 21 249-269 48-68 (267)
98 3szr_A Interferon-induced GTP- 50.3 22 0.00074 39.4 6.5 19 301-319 48-66 (608)
99 3b9p_A CG5977-PA, isoform A; A 49.8 27 0.00092 33.9 6.5 21 300-320 56-76 (297)
100 3cf0_A Transitional endoplasmi 49.3 12 0.00041 37.1 3.9 21 300-320 51-71 (301)
101 4b4t_K 26S protease regulatory 49.2 15 0.00052 39.2 4.9 20 301-320 209-228 (428)
102 2r8r_A Sensor protein; KDPD, P 48.9 12 0.00042 36.7 3.8 43 372-422 85-127 (228)
103 2ihy_A ABC transporter, ATP-bi 48.7 11 0.00036 37.7 3.4 52 365-425 173-226 (279)
104 3lda_A DNA repair protein RAD5 48.6 36 0.0012 35.8 7.6 21 300-320 180-200 (400)
105 1yqt_A RNAse L inhibitor; ATP- 46.5 24 0.00084 38.4 6.1 49 367-426 172-222 (538)
106 3hr8_A Protein RECA; alpha and 45.2 25 0.00086 36.5 5.7 21 301-321 64-84 (356)
107 3h4m_A Proteasome-activating n 44.7 25 0.00085 33.8 5.3 20 301-320 54-73 (285)
108 1xx6_A Thymidine kinase; NESG, 44.5 40 0.0014 31.6 6.5 35 372-420 82-116 (191)
109 3pfi_A Holliday junction ATP-d 44.3 56 0.0019 32.2 8.0 20 301-320 58-77 (338)
110 1njg_A DNA polymerase III subu 43.6 48 0.0016 29.8 6.8 20 301-320 48-67 (250)
111 1lv7_A FTSH; alpha/beta domain 43.5 43 0.0015 31.8 6.7 20 301-320 48-67 (257)
112 1e69_A Chromosome segregation 43.4 17 0.00058 36.5 4.0 49 370-428 240-288 (322)
113 2chg_A Replication factor C sm 43.1 57 0.002 28.9 7.2 20 301-320 41-60 (226)
114 3bk7_A ABC transporter ATP-bin 41.7 27 0.00092 38.8 5.6 51 367-426 242-292 (607)
115 4fcw_A Chaperone protein CLPB; 41.6 18 0.0006 35.3 3.7 21 301-321 50-70 (311)
116 2r6a_A DNAB helicase, replicat 41.6 47 0.0016 35.0 7.3 24 248-271 204-227 (454)
117 2jeo_A Uridine-cytidine kinase 41.2 8.4 0.00029 36.9 1.3 29 292-320 19-47 (245)
118 2b8t_A Thymidine kinase; deoxy 41.2 38 0.0013 32.7 5.9 35 372-420 90-124 (223)
119 3tif_A Uncharacterized ABC tra 40.5 6.7 0.00023 38.0 0.4 28 292-319 25-52 (235)
120 1hqc_A RUVB; extended AAA-ATPa 40.5 97 0.0033 30.1 8.9 20 301-320 41-60 (324)
121 2j9r_A Thymidine kinase; TK1, 39.7 51 0.0017 31.9 6.5 35 372-420 102-136 (214)
122 3g5u_A MCG1178, multidrug resi 39.6 27 0.00092 42.2 5.5 118 292-423 1053-1231(1284)
123 4b4t_I 26S protease regulatory 39.4 26 0.00089 37.6 4.8 20 301-320 219-238 (437)
124 2orw_A Thymidine kinase; TMTK, 39.2 43 0.0015 30.8 5.8 18 301-318 6-23 (184)
125 3j16_B RLI1P; ribosome recycli 39.1 21 0.00072 39.7 4.2 50 369-427 237-286 (608)
126 2pcj_A ABC transporter, lipopr 39.1 6.7 0.00023 37.6 0.2 28 292-319 24-51 (224)
127 1htw_A HI0065; nucleotide-bind 38.7 9.2 0.00031 34.9 1.0 22 300-321 35-56 (158)
128 3tr0_A Guanylate kinase, GMP k 38.5 10 0.00035 34.5 1.3 21 300-320 9-29 (205)
129 1sgw_A Putative ABC transporte 37.9 7.9 0.00027 37.2 0.4 28 292-319 29-56 (214)
130 3lnc_A Guanylate kinase, GMP k 37.6 11 0.00038 35.5 1.5 28 292-319 21-48 (231)
131 2onk_A Molybdate/tungstate ABC 37.2 9.4 0.00032 37.2 0.9 28 292-320 19-46 (240)
132 3pih_A Uvrabc system protein A 36.5 40 0.0014 39.5 6.1 49 370-427 825-873 (916)
133 1g6h_A High-affinity branched- 36.4 8.9 0.0003 37.6 0.6 28 292-319 27-54 (257)
134 3gfo_A Cobalt import ATP-bindi 36.3 8.4 0.00029 38.4 0.4 28 292-319 28-55 (275)
135 2d2e_A SUFC protein; ABC-ATPas 36.2 10 0.00035 37.0 0.9 29 292-320 23-51 (250)
136 1vpl_A ABC transporter, ATP-bi 36.0 8.6 0.0003 37.9 0.4 28 292-319 35-62 (256)
137 1b0u_A Histidine permease; ABC 35.8 8.7 0.0003 37.8 0.4 28 292-319 26-53 (262)
138 2olj_A Amino acid ABC transpor 35.7 8.8 0.0003 38.0 0.4 28 292-319 44-71 (263)
139 1ji0_A ABC transporter; ATP bi 35.6 8.9 0.0003 37.2 0.4 28 292-319 26-53 (240)
140 2zu0_C Probable ATP-dependent 35.6 10 0.00036 37.4 0.9 30 292-321 40-69 (267)
141 2cbz_A Multidrug resistance-as 34.8 9.4 0.00032 37.0 0.4 29 292-320 25-53 (237)
142 3ozx_A RNAse L inhibitor; ATP 34.6 32 0.0011 37.6 4.7 50 368-427 153-202 (538)
143 2r6f_A Excinuclease ABC subuni 34.5 37 0.0013 40.0 5.4 47 371-426 866-912 (972)
144 2ihy_A ABC transporter, ATP-bi 33.9 9.7 0.00033 38.0 0.4 28 292-319 41-68 (279)
145 2yz2_A Putative ABC transporte 33.7 10 0.00034 37.4 0.4 28 292-319 27-54 (266)
146 2pze_A Cystic fibrosis transme 33.4 10 0.00035 36.5 0.4 29 292-320 28-56 (229)
147 3pvs_A Replication-associated 33.0 29 0.00098 37.0 3.9 20 301-320 53-72 (447)
148 1mv5_A LMRA, multidrug resista 33.0 10 0.00035 36.8 0.4 29 292-320 22-50 (243)
149 2vf7_A UVRA2, excinuclease ABC 32.8 52 0.0018 38.2 6.2 46 372-426 752-797 (842)
150 2ff7_A Alpha-hemolysin translo 32.7 11 0.00036 36.9 0.4 28 292-319 29-56 (247)
151 2qi9_C Vitamin B12 import ATP- 32.6 11 0.00036 37.1 0.4 28 292-319 20-47 (249)
152 2qz4_A Paraplegin; AAA+, SPG7, 32.4 55 0.0019 30.7 5.4 20 301-320 42-61 (262)
153 2yl4_A ATP-binding cassette SU 32.3 39 0.0013 37.1 4.9 46 370-427 500-547 (595)
154 1vh6_A Flagellar protein FLIS; 32.2 1.2E+02 0.0042 27.4 7.5 63 481-543 54-124 (145)
155 2nq2_C Hypothetical ABC transp 32.2 11 0.00037 37.0 0.4 29 292-320 25-53 (253)
156 3vfd_A Spastin; ATPase, microt 32.2 45 0.0015 34.1 5.1 21 300-320 150-170 (389)
157 2o8b_B DNA mismatch repair pro 31.9 20 0.00069 42.4 2.7 94 161-254 23-116 (1022)
158 3b5x_A Lipid A export ATP-bind 31.8 52 0.0018 35.9 5.8 49 367-427 494-544 (582)
159 2ygr_A Uvrabc system protein A 31.6 44 0.0015 39.5 5.4 47 371-426 884-930 (993)
160 3auy_A DNA double-strand break 31.5 20 0.00068 36.8 2.3 42 372-425 306-349 (371)
161 2ixe_A Antigen peptide transpo 31.3 12 0.00039 37.2 0.4 28 292-319 39-66 (271)
162 1ypw_A Transitional endoplasmi 30.9 18 0.00062 41.5 2.0 23 299-321 512-534 (806)
163 2ghi_A Transport protein; mult 29.5 13 0.00044 36.5 0.4 29 292-320 40-68 (260)
164 4f4c_A Multidrug resistance pr 29.5 82 0.0028 38.2 7.4 115 292-420 1099-1274(1321)
165 2px0_A Flagellar biosynthesis 29.1 59 0.002 32.5 5.2 23 299-321 106-128 (296)
166 1zp6_A Hypothetical protein AT 29.0 15 0.00051 33.1 0.7 20 300-319 11-30 (191)
167 1z6g_A Guanylate kinase; struc 28.8 18 0.00063 34.1 1.3 29 292-320 17-45 (218)
168 4b4t_M 26S protease regulatory 28.6 41 0.0014 36.0 4.1 20 301-320 218-237 (434)
169 1znw_A Guanylate kinase, GMP k 28.5 18 0.00063 33.5 1.3 22 300-321 22-43 (207)
170 2iw3_A Elongation factor 3A; a 28.5 54 0.0018 38.8 5.4 47 368-426 916-962 (986)
171 3d8b_A Fidgetin-like protein 1 28.2 61 0.0021 32.9 5.2 21 300-320 119-139 (357)
172 1r6b_X CLPA protein; AAA+, N-t 27.3 51 0.0017 37.0 4.8 121 300-434 209-337 (758)
173 1ojl_A Transcriptional regulat 27.2 19 0.00067 35.9 1.3 20 301-320 28-47 (304)
174 3u61_B DNA polymerase accessor 27.1 1.1E+02 0.0036 30.0 6.7 41 371-423 105-147 (324)
175 3kta_B Chromosome segregation 26.9 52 0.0018 30.4 4.1 45 372-426 87-131 (173)
176 2vhj_A Ntpase P4, P4; non- hyd 26.6 1.1E+02 0.0037 31.6 6.8 20 301-320 126-145 (331)
177 3e70_C DPA, signal recognition 26.6 1.6E+02 0.0053 30.0 7.9 144 249-423 131-280 (328)
178 3c8u_A Fructokinase; YP_612366 26.5 25 0.00087 32.5 1.9 23 300-322 24-46 (208)
179 3gd7_A Fusion complex of cysti 26.5 24 0.00081 37.1 1.8 61 358-430 160-222 (390)
180 2vf7_A UVRA2, excinuclease ABC 26.3 84 0.0029 36.5 6.4 46 373-427 401-446 (842)
181 2ygr_A Uvrabc system protein A 26.1 97 0.0033 36.7 7.0 47 372-427 542-588 (993)
182 3pih_A Uvrabc system protein A 25.9 72 0.0025 37.3 5.9 57 362-427 475-531 (916)
183 1w1w_A Structural maintenance 25.9 38 0.0013 35.3 3.3 45 370-426 354-401 (430)
184 2dr3_A UPF0273 protein PH0284; 25.6 69 0.0024 29.5 4.8 45 372-424 129-175 (247)
185 3qf4_A ABC transporter, ATP-bi 25.6 49 0.0017 36.3 4.2 45 370-426 496-542 (587)
186 2bbs_A Cystic fibrosis transme 25.5 15 0.00053 36.8 0.1 28 292-319 58-85 (290)
187 2pjz_A Hypothetical protein ST 25.5 16 0.00056 36.0 0.3 27 292-319 25-51 (263)
188 2r6f_A Excinuclease ABC subuni 25.4 1E+02 0.0035 36.4 7.0 47 372-427 525-571 (972)
189 1u94_A RECA protein, recombina 24.8 64 0.0022 33.2 4.7 21 300-320 65-85 (356)
190 3b85_A Phosphate starvation-in 24.6 30 0.001 32.8 2.0 22 300-321 24-45 (208)
191 2qp9_X Vacuolar protein sortin 24.5 85 0.0029 31.8 5.5 20 301-320 87-106 (355)
192 4eun_A Thermoresistant glucoki 24.0 25 0.00087 32.2 1.3 22 299-320 30-51 (200)
193 3asz_A Uridine kinase; cytidin 24.0 22 0.00076 32.6 0.9 22 300-321 8-29 (211)
194 1a5t_A Delta prime, HOLB; zinc 23.7 55 0.0019 32.8 3.9 40 370-422 107-148 (334)
195 3eie_A Vacuolar protein sortin 23.5 92 0.0031 30.8 5.5 20 301-320 54-73 (322)
196 2it1_A 362AA long hypothetical 23.4 23 0.00077 36.9 0.9 29 292-320 23-51 (362)
197 3iqc_A FLIS, flagellar protein 23.2 2.1E+02 0.0072 25.3 7.2 59 481-539 57-125 (131)
198 3kta_A Chromosome segregation 23.1 24 0.00081 31.6 0.9 22 300-321 28-49 (182)
199 2dhr_A FTSH; AAA+ protein, hex 23.0 1.2E+02 0.0041 32.8 6.6 20 301-320 67-86 (499)
200 3fvq_A Fe(3+) IONS import ATP- 22.7 22 0.00075 37.1 0.7 29 292-320 24-52 (359)
201 1g29_1 MALK, maltose transport 22.6 24 0.00082 36.8 0.9 29 292-320 23-51 (372)
202 1ypw_A Transitional endoplasmi 22.3 83 0.0028 36.0 5.4 23 298-320 238-260 (806)
203 1d2n_A N-ethylmaleimide-sensit 21.9 1.4E+02 0.0047 28.5 6.2 20 301-320 67-86 (272)
204 3a00_A Guanylate kinase, GMP k 21.8 30 0.001 31.4 1.3 20 301-320 4-23 (186)
205 1jr3_A DNA polymerase III subu 21.7 2.1E+02 0.0071 28.1 7.7 19 302-320 42-60 (373)
206 1iqp_A RFCS; clamp loader, ext 21.0 89 0.003 30.1 4.7 20 301-320 49-68 (327)
207 1xp8_A RECA protein, recombina 20.5 1.7E+02 0.0057 30.2 6.9 20 301-320 77-96 (366)
208 3hu3_A Transitional endoplasmi 20.5 1E+02 0.0035 33.1 5.4 21 300-320 240-260 (489)
209 2yhs_A FTSY, cell division pro 20.3 1.5E+02 0.0051 32.3 6.6 168 224-421 270-448 (503)
210 2zan_A Vacuolar protein sortin 20.3 1.4E+02 0.0047 31.4 6.2 20 301-320 170-189 (444)
No 1
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=2.9e-49 Score=463.07 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=172.8
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecccc------cchhhhhchhhhHHhhhcCCCc
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQ 372 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~iG~------~qStF~~Em~e~~~il~~a~~~ 372 (577)
..+|+|||++|||+|+++++++. +|+|+|+|||+..+.+++ |.||+++|. +.|+|+.||.+++.++..++.+
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl~~-~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~ 869 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGLLA-VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAH 869 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-HHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred EEEEECCCCCChHHHHHHHHHHH-HHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCC
Confidence 34588999999999999999998 999999999999999999 999999885 3489999999999999999999
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCCCcccccceeeeecC--CCC
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR--NDG 449 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~--~~~ 449 (577)
+|||||| +|+||++.||.+++++++++|.+. +|.+||+|||++++..+..+..|.++||.+..... +..
T Consensus 870 sLlLLDE--------p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~ 941 (1022)
T 2o8b_B 870 SLVLVDE--------LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPS 941 (1022)
T ss_dssp CEEEEEC--------TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC---------
T ss_pred cEEEEEC--------CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCcccCC
Confidence 9999999 999999999999999999999987 99999999999999998888889999998654211 112
Q ss_pred cceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy13263 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFASLVKSGEKVDVEELQKALESV 529 (577)
Q Consensus 450 ~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~~~~~~~~~~L~~~~~~~~~~ld~~~l~~l~~~L 529 (577)
.+.++|+|+|.+|+|++||||+||+++|||++||+||++++.+|+.....++++.+|.+.+ ....++.+.+..++..|
T Consensus 942 ~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~ 1019 (1022)
T 2o8b_B 942 QETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLAS--ERSTVDAEAVHKLLTLI 1019 (1022)
T ss_dssp ----CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSSTTSTTTSCC------------------------
T ss_pred CCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999998887777776666544 34566677777676666
Q ss_pred HH
Q psy13263 530 KS 531 (577)
Q Consensus 530 ~~ 531 (577)
+.
T Consensus 1020 ~~ 1021 (1022)
T 2o8b_B 1020 KE 1021 (1022)
T ss_dssp --
T ss_pred hh
Confidence 43
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=4.7e-37 Score=356.05 Aligned_cols=245 Identities=26% Similarity=0.375 Sum_probs=203.9
Q ss_pred hhccCcccccCccccc----cccccccccc--ccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ce
Q psy13263 271 ESQTPSGCFPDMSELL----KYFENAFDHK--EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TV 343 (577)
Q Consensus 271 ~i~i~~GrhPlLe~~l----~~~~n~F~~~--~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~ 343 (577)
.+.+.+||||+++..+ .+++|++... .....+|+|||++|||+|+++++.|. +|+|+|+|||+..+.+++ +.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~-~~aq~g~~vpa~~~~i~~~d~ 718 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT-IMAQIGSYVPAEEATIGIVDG 718 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH-HHHHHTCCBSSSEEEEECCSE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH-HHhhcCccccchhhhhhHHHH
Confidence 5888999999987543 4778876654 44567899999999999999999999 999999999999999999 99
Q ss_pred eeecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEE
Q psy13263 344 IYSEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTV 416 (577)
Q Consensus 344 if~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~l 416 (577)
+|.++|. +.|+|+.+|.++..++..++..+|||||| +|+||++.+|.+|+++++++|.+. ++.+|
T Consensus 719 i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDE--------P~~GlD~~~~~~i~~~il~~L~~~~g~tvl 790 (918)
T 3thx_B 719 IFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDE--------LGRGTSTHDGIAIAYATLEYFIRDVKSLTL 790 (918)
T ss_dssp EEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEES--------TTTTSCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeC--------CCCCCCHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 9998875 34999999999999998899999999999 999999999999999999999874 99999
Q ss_pred EecchHHHHHHhhcCCC-cccccceeeeecCC---------CCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q psy13263 417 FATHYHSVARRLREEPN-VAFEYMSYIEDKRN---------DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFG 486 (577)
Q Consensus 417 faTHy~eL~~l~~~~~~-V~n~hm~~~~~~~~---------~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA 486 (577)
|+|||++|++++..+++ |.|+||.+...+.+ ...++++|+|||.+|+|++||||+||+++|||++||+||
T Consensus 791 ~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA 870 (918)
T 3thx_B 791 FVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKA 870 (918)
T ss_dssp EECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHH
T ss_pred EEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHHHHHH
Confidence 99999999999988885 99999999743210 013579999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHH----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy13263 487 TTVAFQMEARHNLR----QLFIHKFASLVKSGEKVDVEELQKALESVKS 531 (577)
Q Consensus 487 ~ei~~~le~~~~~~----~~~~~L~~~~~~~~~~ld~~~l~~l~~~L~~ 531 (577)
++++.+||+....+ +.+++|+. ..+..+++.|++.++.
T Consensus 871 ~~~~~~LE~~~~~~~k~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 912 (918)
T 3thx_B 871 AHKSKELEGLINTKRKRLKYFAKLWT-------MHNAQDLQKWTEEFNM 912 (918)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 99999999887643 34444442 2345677777665543
No 3
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=2.5e-36 Score=350.74 Aligned_cols=255 Identities=17% Similarity=0.243 Sum_probs=214.5
Q ss_pred hhhccCcccccCccccc--cccccccccc--ccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-cee
Q psy13263 270 YESQTPSGCFPDMSELL--KYFENAFDHK--EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVI 344 (577)
Q Consensus 270 ~~i~i~~GrhPlLe~~l--~~~~n~F~~~--~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~i 344 (577)
..+.+.+||||+++... .+++|++... .....+|+|||++|||+|+++++++. +|+|+|+|||+..+.+++ +.+
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~-~~aq~G~~vpa~~~~~~~~d~i 708 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIV-LMAQIGCFVPCESAEVSIVDCI 708 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHH-HHHHHTCCBSEEEEEEECCSEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHH-HHHhcCCccccccccchHHHHH
Confidence 35888999999998652 4778876555 34567899999999999999999999 999999999999999999 999
Q ss_pred eecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEE
Q psy13263 345 YSEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVF 417 (577)
Q Consensus 345 f~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lf 417 (577)
|.++|. +.|+|+.+|.+++.++..++.++|||||| +|+||++.+|.+|+++++++|.+. +|.+||
T Consensus 709 ~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE--------p~~GlD~~~~~~i~~~il~~l~~~~g~~vl~ 780 (934)
T 3thx_A 709 LARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDE--------LGRGTSTYDGFGLAWAISEYIATKIGAFCMF 780 (934)
T ss_dssp EEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEES--------CSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC--------CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999885 34999999999999998899999999999 999999999999999999999985 999999
Q ss_pred ecchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy13263 418 ATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH 497 (577)
Q Consensus 418 aTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~~ 497 (577)
+|||++|..++...+.|.|+||.+.... +.++|+|+|.+|.++.||||+||+++|||++||+||++++.+|++..
T Consensus 781 aTH~~el~~lad~~~~v~ng~v~~~~~~-----~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~~ 855 (934)
T 3thx_A 781 ATHFHELTALANQIPTVNNLHVTALTTE-----ETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQ 855 (934)
T ss_dssp EESCGGGGGGGGTCTTEEEEEEEEEEET-----TEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTTT
T ss_pred EcCcHHHHHHhcccceeEeeEEEEEecC-----CcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987653 58999999999999999999999999999999999999999998764
Q ss_pred hHH-------------------HHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHHHHHHHH
Q psy13263 498 NLR-------------------QLFIHKFASLVKSGEKVDVEELQK--ALESVKSFESQTKK 538 (577)
Q Consensus 498 ~~~-------------------~~~~~L~~~~~~~~~~ld~~~l~~--l~~~L~~~~~~~~~ 538 (577)
... ..-..+.+.+++++..+|.++++| .++.|.+++++...
T Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~tp~eal~~l~~l~~~~~~ 917 (934)
T 3thx_A 856 YIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIA 917 (934)
T ss_dssp C---------------CCSHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 210 011123334556667777777555 45666666665443
No 4
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=5e-35 Score=335.54 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=189.6
Q ss_pred hhhccCcccccCccccc--cccccccccc-ccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceee
Q psy13263 270 YESQTPSGCFPDMSELL--KYFENAFDHK-EASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIY 345 (577)
Q Consensus 270 ~~i~i~~GrhPlLe~~l--~~~~n~F~~~-~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if 345 (577)
..+.+.+||||+++..+ .++.|++... .....+|+|||++|||+|+++++.+. +|+|+|+|||+..+.+++ +.+|
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~-~~~q~G~~vpa~~~~i~~~~~i~ 654 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA-LMAYIGSYVPAQKVEIGPIDRIF 654 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH-HHHTTTCCBSSSEEEECCCCEEE
T ss_pred CCEEEEeccccEEEccCCCceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH-HHHhcCcccchhcccceeHHHHH
Confidence 35889999999998643 3667766554 34457799999999999999999998 999999999999999999 9999
Q ss_pred ecccc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEe
Q psy13263 346 SEAQK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFA 418 (577)
Q Consensus 346 ~~iG~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfa 418 (577)
.++|. +.|+|+.||.++..++..++..+|+|+|| +|+||++.||.+++++++++|.+. ++.+||+
T Consensus 655 ~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDE--------p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 655 TRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDE--------IGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHCCTTEEEEEES--------CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEEC--------CCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 98875 34899999999999998999999999999 999999999999999999999985 9999999
Q ss_pred cchHHHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy13263 419 THYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496 (577)
Q Consensus 419 THy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~~ 496 (577)
|||+++..++...++|.|+||.+.+.. +.++|+|+|.+|++++||||+||+++|||++||+||++++.++++.
T Consensus 727 TH~~el~~l~d~~~~v~n~~~~~~~~~-----~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~~ 799 (800)
T 1wb9_A 727 THYFELTQLPEKMEGVANVHLDALEHG-----DTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESI 799 (800)
T ss_dssp CSCGGGGGHHHHSTTEEEEEEEEEEET-----TEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred eCCHHHHHHhhhhhceEEEEEEEEEcC-----CcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 999999999888999999999998753 5899999999999999999999999999999999999999999853
No 5
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=8.3e-34 Score=324.03 Aligned_cols=209 Identities=21% Similarity=0.294 Sum_probs=188.7
Q ss_pred hhhccCcccccCcccccccccccccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceecc-ceeeecc
Q psy13263 270 YESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEA 348 (577)
Q Consensus 270 ~~i~i~~GrhPlLe~~l~~~~n~F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~-d~if~~i 348 (577)
..+.+.+||||+++..-.++.|++... ....+|+|||++|||+|+++++.+. +|+|+|++||+..+.+++ +.+|.++
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~-~~~~~G~~vpa~~~~i~~v~~i~~~~ 626 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA-HELVLITGPNMAGKSTFLRQTALIA-LLAQVGSFVPAEEAHLPLFDGIYTRI 626 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHH-HHHTTTCCBSSSEEEECCCSEEEEEC
T ss_pred CcEEEEEeECceEccCCceEeeeccCC-CcEEEEECCCCCChHHHHHHHHhhh-hhcccCceeehhccceeeHHHhhccC
Confidence 458899999999874123667766665 5667899999999999999999998 899999999999999999 9999987
Q ss_pred cc------cchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 349 QK------KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 349 G~------~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
|. ++|+|+.||.+++.++..++..+|+|+|| +||||++.||.+++++|+++|.+.++.+||+|||+
T Consensus 627 ~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDE--------pgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~ 698 (765)
T 1ewq_A 627 GASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDE--------VGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 698 (765)
T ss_dssp CC------CCSHHHHHHHHHHHHHHHCCTTEEEEEES--------TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred CHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEEC--------CCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 64 45999999999999998899999999999 99999999999999999999998899999999999
Q ss_pred HHHHHhhcCCCcccccceeeeecCCCCcceEEEEEeecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy13263 423 SVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495 (577)
Q Consensus 423 eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~l~flYkL~~G~~~~SyGi~vArlaGlP~~VI~rA~ei~~~le~ 495 (577)
++..+. .++|.|+||.+.+. .+.++|+|+|.+|.+++||||+||+++|||++||+||++++.+|++
T Consensus 699 ~l~~~~--~~~v~n~~~~~~~~-----~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 699 ELTALG--LPRLKNLHVAAREE-----AGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAA 764 (765)
T ss_dssp HHHTCC--CTTEEEEEEEEECC-----SSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhh--hhcceEEEEEEEEc-----CCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 999877 78999999999864 3579999999999999999999999999999999999999999874
No 6
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.68 E-value=1.2e-09 Score=125.29 Aligned_cols=50 Identities=32% Similarity=0.458 Sum_probs=48.6
Q ss_pred ccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhccc
Q psy13263 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKE 254 (577)
Q Consensus 205 ~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkG 254 (577)
++||||+|||++|++|||++||||+|+|||+|++||++++++|+|+++++
T Consensus 12 ~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r 61 (765)
T 1ewq_A 12 PLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHK 61 (765)
T ss_dssp CCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEE
T ss_pred CCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEecc
Confidence 58999999999999999999999999999999999999999999999987
No 7
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.62 E-value=2.2e-09 Score=125.06 Aligned_cols=51 Identities=33% Similarity=0.347 Sum_probs=47.4
Q ss_pred cccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhccc
Q psy13263 204 KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKE 254 (577)
Q Consensus 204 ~~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkG 254 (577)
.++||||+|||++|++|||++||||+|+|||+|++||++++++|+|++..+
T Consensus 11 ~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~ 61 (918)
T 3thx_B 11 SIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLD 61 (918)
T ss_dssp TTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEE
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCceeecC
Confidence 358999999999999999999999999999999999999999999986544
No 8
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.62 E-value=3.1e-09 Score=122.39 Aligned_cols=52 Identities=35% Similarity=0.572 Sum_probs=49.3
Q ss_pred cccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhhcccc
Q psy13263 204 KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255 (577)
Q Consensus 204 ~~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~mkGs 255 (577)
.++||||+|||++|++|||+++|||+|+|||+|++||++++++|+++++++.
T Consensus 8 ~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~ 59 (800)
T 1wb9_A 8 DAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRG 59 (800)
T ss_dssp GGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEC
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccc
Confidence 4679999999999999999999999999999999999999999999998764
No 9
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.39 E-value=0.0055 Score=56.38 Aligned_cols=105 Identities=6% Similarity=-0.077 Sum_probs=59.5
Q ss_pred ccccccccccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhH------Hhh
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY------ASK 366 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~------~il 366 (577)
|........+++|||..|||...+.++... ..+-|.. .+|..... +..++.... ..+
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~--~~~~g~~-----------~~~~~~~~----~~~~~~~~~~~~~~~~~~ 95 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI--YEKKGIR-----------GYFFDTKD----LIFRLKHLMDEGKDTKFL 95 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHH--HHHSCCC-----------CCEEEHHH----HHHHHHHHHHHTCCSHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHH--HHHcCCe-----------EEEEEHHH----HHHHHHHHhcCchHHHHH
Confidence 333334456788999999999999887643 2222311 12221111 111111000 111
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
.......|++||| ++..-.......+...+++.+...+..+|++||+.
T Consensus 96 ~~~~~~~llilDE--------~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 96 KTVLNSPVLVLDD--------LGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHTCSEEEEET--------CSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHhcCCCEEEEeC--------CCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1112347899999 88533333445566777778777789999999985
No 10
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.92 E-value=0.00029 Score=82.51 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=44.0
Q ss_pred cccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhhhhhhhhhhhhh
Q psy13263 204 KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSY 251 (577)
Q Consensus 204 ~~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA~i~a~eLdl~~ 251 (577)
.+.+|+++||+++|++|+|+|+||++|+||++|.+||+.++..+.++.
T Consensus 14 ~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~ 61 (934)
T 3thx_A 14 AAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61 (934)
T ss_dssp HHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSS
T ss_pred ccccHHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhh
Confidence 457899999999999999999999999999999999999998887654
No 11
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.90 E-value=0.039 Score=50.83 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=17.0
Q ss_pred ccccccccCCCCCCCchhHHH
Q psy13263 297 EASSAGNIIPKAGVDKEYDEV 317 (577)
Q Consensus 297 ~a~~~~I~gPN~gGKsvy~k~ 317 (577)
.....+++|||.+|||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 334457899999999999994
No 12
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.80 E-value=0.043 Score=51.44 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=33.9
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecc---hHHHHHHhhcCCCcccc
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATH---YHSVARRLREEPNVAFE 437 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTH---y~eL~~l~~~~~~V~n~ 437 (577)
.....|++||| +| -|+-.|- ....++.+.|.+.++.+|++|| .+.+..-....++++.+
T Consensus 97 ~~~p~llilDE--------ig-p~~~ld~-~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~ 158 (178)
T 1ye8_A 97 KDRRKVIIIDE--------IG-KMELFSK-KFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HCTTCEEEECC--------CS-TTGGGCH-HHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEE
T ss_pred ccCCCEEEEeC--------CC-CcccCCH-HHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcEEE
Confidence 45567999999 88 3443332 2334455555444666888886 55666554444444333
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.19 E-value=0.094 Score=52.43 Aligned_cols=48 Identities=8% Similarity=-0.097 Sum_probs=31.9
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
...|+|+|| --.|=++.....+ ..++..|.+. ++.+|++||+.++...
T Consensus 165 ~p~lLllDE--------Pts~LD~~~~~~i-~~~l~~l~~~~~~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 165 TPRWLFLDE--------PTSALDLYHQQHT-LRLLRQLTRQEPLAVCCVLHDLNLAAL 213 (266)
T ss_dssp CCEEEEECC--------CCSSCCHHHHHHH-HHHHHHHHHHSSEEEEEECSCHHHHHH
T ss_pred CCCEEEEeC--------ccccCCHHHHHHH-HHHHHHHHHcCCCEEEEEEcCHHHHHH
Confidence 568999999 5455554433333 3455556555 5689999999887653
No 14
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.80 E-value=0.025 Score=53.83 Aligned_cols=48 Identities=8% Similarity=-0.060 Sum_probs=31.4
Q ss_pred CCceEEeecccCcccccccccCC----CCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGT----GTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGT----st~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
....+++||| +..+- ++.........++..|.+.++.+|++||..+..
T Consensus 134 ~~p~~lilDe--------p~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDS--------IPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEEC--------HHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEcc--------HHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 3557899999 54443 333333446667777776799999999997665
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.92 E-value=0.11 Score=51.64 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=36.6
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+.-.+..+....|+|+|| --.|=++.--..+ +.++..+.+.+..+|++||+.+...
T Consensus 155 v~lAraL~~~p~lllLDE--------Pts~LD~~~~~~l-~~~l~~l~~~g~tiiivtHd~~~~~ 210 (256)
T 1vpl_A 155 LLIARALMVNPRLAILDE--------PTSGLDVLNAREV-RKILKQASQEGLTILVSSHNMLEVE 210 (256)
T ss_dssp HHHHHHHTTCCSEEEEES--------TTTTCCHHHHHHH-HHHHHHHHHTTCEEEEEECCHHHHT
T ss_pred HHHHHHHHcCCCEEEEeC--------CccccCHHHHHHH-HHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 333445566778999999 5555555433333 3445555555889999999987654
No 16
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.78 E-value=0.28 Score=51.53 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=36.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+++-.+..+....|+|+|| --.|=++.-...+..-+.+.+.+.+..+|++||+.+.+..
T Consensus 146 RValArAL~~~P~lLLLDE--------Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~ 204 (359)
T 3fvq_A 146 RAALARALAPDPELILLDE--------PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ 204 (359)
T ss_dssp HHHHHHHHTTCCSEEEEES--------TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeC--------CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 3444445567778999999 4444444433333333333333448999999999876653
No 17
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.75 E-value=0.36 Score=47.39 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=36.3
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++-.+..+....++|+|| --.|=++.-. ...+.++..+.+. +..+|++||+.+...
T Consensus 134 Rv~lAral~~~p~lllLDE--------Pts~LD~~~~-~~~~~~l~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDE--------PLSAVDLKTK-GVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp HHHHHHHHTTCCSSBEEES--------TTSSCCHHHH-HHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3333445566778999999 5555554333 3334455556544 889999999987554
No 18
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.71 E-value=0.18 Score=45.75 Aligned_cols=85 Identities=8% Similarity=-0.027 Sum_probs=51.4
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeeccc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEt 380 (577)
.+++||+..|||...+.++... . .-| ...+|..... +..+ ..+ ....|++|||
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~~~--~-~~g-----------~~~~~~~~~~----~~~~-----~~~---~~~~lLilDE- 91 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQA--L-EAG-----------KNAAYIDAAS----MPLT-----DAA---FEAEYLAVDQ- 91 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHHH--H-TTT-----------CCEEEEETTT----SCCC-----GGG---GGCSEEEEES-
T ss_pred EEEECCCCCCHHHHHHHHHHHH--H-hcC-----------CcEEEEcHHH----hhHH-----HHH---hCCCEEEEeC-
Confidence 4688999999999999887643 1 112 1233332221 1111 111 1246889999
Q ss_pred CcccccccccCCCCcchhhHHHHHHHHHHhcCCe-EEEecch
Q psy13263 381 VENYVTPECRGTGTNDGCVIARVTLEKFLQIGCL-TVFATHY 421 (577)
Q Consensus 381 g~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~-~lfaTHy 421 (577)
++...... ....+.+++.+.+.+.. +|+|||.
T Consensus 92 -------~~~~~~~~--~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 92 -------VEKLGNEE--QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp -------TTCCCSHH--HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred -------ccccChHH--HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 87743322 55566777777777665 8999996
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.57 E-value=0.35 Score=50.96 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=34.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
+..+....|+|+|| --.|=++..... ...++..|.+. +..+|++||+.++...
T Consensus 176 rAL~~~P~lLLlDE--------PTs~LD~~~~~~-i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 176 RALASNPKVLLCDQ--------ATSALDPATTRS-ILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHTTTCCSEEEEES--------TTTTSCHHHHHH-HHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHhcCCCEEEEEC--------CCccCCHHHHHH-HHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 33455778999999 433433333222 23445556554 8999999999887654
No 20
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.48 E-value=0.13 Score=49.78 Aligned_cols=56 Identities=2% Similarity=-0.008 Sum_probs=37.4
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
++...+.......++|+|| --.|=++.-...+.. ++..+.+.+..+|++||+.+..
T Consensus 141 rv~laraL~~~p~lllLDE--------Pts~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDD--------PVVAIDEDSKHKVLK-SILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp HHHHHHHTTSCCSEEEEES--------TTTTSCTTTHHHHHH-HHHHHHHHHSEEEEEESSCCTT
T ss_pred HHHHHHHHHhCCCEEEEEC--------CCcCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHH
Confidence 3333455567778999999 777777655444443 4445554578899999997543
No 21
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.28 E-value=0.51 Score=46.13 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=36.1
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+.......|+|+|| --.|=++..-..|... +..+. .+..+|++||..++...
T Consensus 152 ral~~~p~lllLDE--------Pts~LD~~~~~~i~~~-l~~~~-~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 152 RAFLRNPKILMLDE--------ATASLDSESESMVQKA-LDSLM-KGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp HHHHHCCSEEEEEC--------CSCSSCSSSCCHHHHH-HHHHH-TTSEEEEECCSHHHHHH
T ss_pred HHHhcCCCEEEEEC--------CcccCCHHHHHHHHHH-HHHhc-CCCEEEEEeCChHHHHh
Confidence 33344567999999 7777777665555544 44455 48899999999876653
No 22
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.85 E-value=0.44 Score=49.85 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=22.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI 321 (577)
+|........+++|||.+|||+.+++++-+
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344444445678999999999999988643
No 23
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.55 E-value=0.34 Score=51.30 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=22.2
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI 321 (577)
+|........+++|||.+|||+.+++++-+
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 344444445679999999999999988643
No 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.43 E-value=0.53 Score=49.30 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=22.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI 321 (577)
+|........+++|||.+|||+.+++++-+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 344444445678999999999999988643
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.24 E-value=0.42 Score=47.49 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=36.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+++-.+..+....|+|+|| --.|=++.-- ...+.++..+.+.+..+|++||+.+...
T Consensus 146 Rv~lAraL~~~p~lllLDE--------Pts~LD~~~~-~~l~~~l~~l~~~g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDE--------PLVGLDREGK-TDLLRIVEKWKTLGKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHHHTTCCSEEEEES--------TTTTCCHHHH-HHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred HHHHHHHHHcCCCEEEEcC--------ccccCCHHHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3333445567778999999 5555555333 3333445555545789999999976543
No 26
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.18 E-value=0.53 Score=49.50 Aligned_cols=30 Identities=7% Similarity=-0.022 Sum_probs=22.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI 321 (577)
+|........+++|||.+|||+.+++++-+
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 444444555679999999999999988643
No 27
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.69 E-value=0.19 Score=46.92 Aligned_cols=23 Identities=0% Similarity=-0.328 Sum_probs=18.8
Q ss_pred cccccCCCCCCCchhHHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIK 322 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~ 322 (577)
..+++|||.+|||++.++++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 34688999999999999987543
No 28
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.16 E-value=0.49 Score=47.53 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=36.5
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHH-hcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~-~~~~~~lfaTHy~eL~~ 426 (577)
+++..+..+....|+|+|| --.|=++.... ..+.++..|. +.+..+|++||+.++..
T Consensus 151 Rv~iAraL~~~P~lLlLDE--------Pts~LD~~~~~-~i~~~l~~l~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDE--------PTAGLDPMGVS-EIMKLLVEMQKELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHHTTCCSEEEEEC--------TTTTCCHHHHH-HHHHHHHHHHHHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHHcCCCEEEEEC--------ccccCCHHHHH-HHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 3333444566778999999 44444444333 3345566666 44889999999986554
No 29
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.45 E-value=0.34 Score=45.28 Aligned_cols=22 Identities=0% Similarity=-0.124 Sum_probs=18.2
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+|+|||.+|||++.++++-.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999988653
No 30
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.85 E-value=0.089 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.4
Q ss_pred hhhccccCccCCcchhhhhhh
Q psy13263 249 CSYMKESGCTGESTLLTQLCN 269 (577)
Q Consensus 249 l~~mkGsn~~GKStlLk~i~~ 269 (577)
++.+-|+|..||||+++.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 455679999999999998864
No 31
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.71 E-value=0.59 Score=48.96 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=35.1
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++-.+..+....|+|+|| --.|=++.-...+ +..+..|.+. +..+|++||+.+.+.
T Consensus 141 RvalArAL~~~P~lLLLDE--------P~s~LD~~~r~~l-~~~l~~l~~~~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDE--------PLSNLDALLRLEV-RAELKRLQKELGITTVYVTHDQAEAL 198 (362)
T ss_dssp HHHHHHHHTTCCSEEEEES--------GGGGSCHHHHHHH-HHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEC--------ccccCCHHHHHHH-HHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 3333445567778999999 4444444333222 2334445444 889999999977654
No 32
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.65 E-value=0.71 Score=51.68 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=32.2
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
...|+|+|| --.|=++.....|. .++..|.+.+..+|++||+.++..
T Consensus 564 ~p~llllDE--------Pt~~LD~~~~~~i~-~~l~~l~~~g~tvi~vtHd~~~~~ 610 (670)
T 3ux8_A 564 GRTLYILDE--------PTTGLHVDDIARLL-DVLHRLVDNGDTVLVIEHNLDVIK 610 (670)
T ss_dssp SCEEEEEES--------TTTTCCHHHHHHHH-HHHHHHHHTTCEEEEECCCHHHHT
T ss_pred CCcEEEEeC--------CCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHH
Confidence 346999999 55555554444433 445556666889999999998754
No 33
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.63 E-value=1.1 Score=53.00 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=23.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+++++++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5555566677899999999999999986
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.51 E-value=0.52 Score=49.53 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=33.9
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
++-.+..+....|+|+|| --.|=++.-...+ +..+..|.+. +..+|++||+.+.+.
T Consensus 148 valArAL~~~P~lLLLDE--------P~s~LD~~~r~~l-~~~l~~l~~~~g~tvi~vTHd~~~a~ 204 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDE--------PLSNLDAKLRVRM-RAELKKLQRQLGVTTIYVTHDQVEAM 204 (372)
T ss_dssp HHHHHHHHTCCSEEEEEC--------TTTTSCHHHHHHH-HHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred HHHHHHHhcCCCEEEECC--------CCccCCHHHHHHH-HHHHHHHHHhcCCEEEEECCCHHHHH
Confidence 333344456678999999 4444443322222 2334445444 889999999977654
No 35
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.26 E-value=2.1 Score=47.78 Aligned_cols=62 Identities=3% Similarity=-0.011 Sum_probs=38.4
Q ss_pred chhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHHh
Q psy13263 358 EVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRL 428 (577)
Q Consensus 358 Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l~ 428 (577)
|-.++...+..+...-|+|+|| --.|=++.--..|. .++..|.+ .+..+|++||+.++....
T Consensus 476 e~QRv~iAraL~~~p~lLlLDE--------Pt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 476 ELQRVAIAATLLRDADIYLLDE--------PSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEC--------TTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeC--------CccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 3334443444566778999999 55555544333333 34455553 488999999998877643
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.07 E-value=1.8 Score=43.07 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=30.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
.+..+....|+|+|| =|+.-|-. ....+++.|.+....+|++||+.+..
T Consensus 140 AraL~~~p~lllLDE-----------Pts~LD~~-~~~~l~~~L~~~~~tviivtHd~~~~ 188 (263)
T 2pjz_A 140 SLALASQPEIVGLDE-----------PFENVDAA-RRHVISRYIKEYGKEGILVTHELDML 188 (263)
T ss_dssp HHHHHTCCSEEEEEC-----------TTTTCCHH-HHHHHHHHHHHSCSEEEEEESCGGGG
T ss_pred HHHHHhCCCEEEEEC-----------CccccCHH-HHHHHHHHHHHhcCcEEEEEcCHHHH
Confidence 344456678999999 34444432 23345555555422899999997654
No 37
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.86 E-value=1.9 Score=40.04 Aligned_cols=92 Identities=3% Similarity=-0.229 Sum_probs=52.9
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeeccc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEt 380 (577)
.+++||...|||.+.+.++.-. ... +. ..+|..... +...+.+. +.......+++|||
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~~--~~~-~~-----------~~~~~~~~~----~~~~~~~~---~~~~~~~~vliiDe- 112 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARA--NEL-ER-----------RSFYIPLGI----HASISTAL---LEGLEQFDLICIDD- 112 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH--HHT-TC-----------CEEEEEGGG----GGGSCGGG---GTTGGGSSEEEEET-
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHc-CC-----------eEEEEEHHH----HHHHHHHH---HHhccCCCEEEEec-
Confidence 4588999999999998876532 111 11 122332222 22222221 11223457999999
Q ss_pred CcccccccccCCCCcchhhHHHHHHHHHHhcCCe-EEEecch
Q psy13263 381 VENYVTPECRGTGTNDGCVIARVTLEKFLQIGCL-TVFATHY 421 (577)
Q Consensus 381 g~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~-~lfaTHy 421 (577)
+..-............+++.+...+.. +|++|+.
T Consensus 113 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 113 -------VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp -------GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred -------cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 877655544455555666666666544 8888875
No 38
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.69 E-value=0.72 Score=45.36 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=28.2
Q ss_pred CceEEeecccCccccccccc--CCCCcc--hhhHHHHHHHHHHh-cCCeEEEecchHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECR--GTGTND--GCVIARVTLEKFLQ-IGCLTVFATHYHSVA 425 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGR--GTst~D--G~ALA~AIlE~L~~-~~~~~lfaTHy~eL~ 425 (577)
.-.||+||| +.. |-+..+ .+.-....+..|++ .+|.+||+||.....
T Consensus 133 ~~~livlDe--------~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 133 GRRLMVLDT--------LRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp TCSEEEEEC--------GGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred CCCEEEECC--------HHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 357999999 766 443322 12344455566654 499999999998765
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.33 E-value=1.3 Score=47.08 Aligned_cols=97 Identities=8% Similarity=-0.042 Sum_probs=56.4
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHh-ccccccccceeccceeeecccccchhhhhchhhh------HHhhhcCC-C
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEI-QTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSK------YASKAKSN-H 371 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqi-g~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~------~~il~~a~-~ 371 (577)
..++.||+..|||...+.++... ..+. + ...+|.... .|..++... ........ .
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l--~~~~~~-----------~~v~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV--VQNEPD-----------LRVMYITSE----KFLNDLVDSMKEGKLNEFREKYRKK 194 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH--HHHCCS-----------SCEEEEEHH----HHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--HHhCCC-----------CeEEEeeHH----HHHHHHHHHHHcccHHHHHHHhcCC
Confidence 34578999999999999887532 1210 1 122332222 222222111 01111112 4
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
..+++||| +.+-............+++.+...++.+|++||.
T Consensus 195 ~~vL~IDE--------i~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 195 VDILLIDD--------VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp CSEEEEEC--------GGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEeC--------cccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67999999 8776654344445556677777778899999996
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.95 E-value=1 Score=46.10 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.++++.-
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 45555555678999999999999998743
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.95 E-value=1.3 Score=49.12 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=21.1
Q ss_pred ccccccccccccCCCCCCCchhHHHHH
Q psy13263 293 FDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 293 F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
|........+|+|||.+|||+.++.+.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 444455567799999999999998874
No 42
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=82.42 E-value=1.7 Score=41.94 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=36.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
+++-.+.......|+|+|| --.|=++.-- ...+.++..|.+.+..+|++||+.++..
T Consensus 148 rv~laral~~~p~lllLDE--------Pt~~LD~~~~-~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 204 (224)
T 2pcj_A 148 RVAIARALANEPILLFADE--------PTGNLDSANT-KRVMDIFLKINEGGTSIVMVTHERELAE 204 (224)
T ss_dssp HHHHHHHTTTCCSEEEEES--------TTTTCCHHHH-HHHHHHHHHHHHTTCEEEEECSCHHHHT
T ss_pred HHHHHHHHHcCCCEEEEeC--------CCCCCCHHHH-HHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3333445566778999999 5555554332 2333445555555889999999987653
No 43
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=82.40 E-value=1.3 Score=42.99 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=37.2
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARR 427 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l 427 (577)
+++-.+..+....++|+|| --.|=++.....+ +.++..|.+. +..+|++||+.++..+
T Consensus 153 Rv~iAral~~~p~llllDE--------Pts~LD~~~~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~ 211 (235)
T 3tif_A 153 RVAIARALANNPPIILADQ--------PTWALDSKTGEKI-MQLLKKLNEEDGKTVVVVTHDINVARF 211 (235)
T ss_dssp HHHHHHHHTTCCSEEEEES--------TTTTSCHHHHHHH-HHHHHHHHHHHCCEEEEECSCHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 3333444566778999999 5455554443333 3445556554 8999999999986543
No 44
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.13 E-value=2.2 Score=39.44 Aligned_cols=20 Identities=10% Similarity=-0.167 Sum_probs=17.3
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||+.+|||.+..+++.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45889999999999998875
No 45
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=81.43 E-value=1.3 Score=40.76 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=29.2
Q ss_pred eEEeecccCcccccccccCCCCcchh-hHHHHHHHHHHhcCCeEEEecch--HHHHHH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGC-VIARVTLEKFLQIGCLTVFATHY--HSVARR 427 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~-ALA~AIlE~L~~~~~~~lfaTHy--~eL~~l 427 (577)
.+++||| +|.-....... .+...+++.....+..+|+||++ .+|...
T Consensus 117 ~~lilDe--------i~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 117 PVLMLDD--------LGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp SEEEEEE--------ECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred CEEEEcC--------CCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 4899999 87643333223 36666777766667788888886 344443
No 46
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.01 E-value=1.8 Score=38.28 Aligned_cols=112 Identities=11% Similarity=-0.050 Sum_probs=54.7
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccc------cchhhhhchhhhHHhhhcCCCceE
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQRV 374 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~------~qStF~~Em~e~~~il~~a~~~sL 374 (577)
.+++||...|||...+.++.-. . . ..++.... +...++...+. ....+...+.+....+.......+
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~--~-~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 118 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRI--I-N--GEVPEGLK--GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVI 118 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH--H-H--TCSCGGGT--TCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEE
T ss_pred eEEECCCCCCHHHHHHHHHHHH--H-h--CCCchhhc--CCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeE
Confidence 4578999999999998776432 1 1 11111100 01122222211 001111222233222334566789
Q ss_pred EeecccCcccccccccCCC---CcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHh
Q psy13263 375 ATKKKNVENYVTPECRGTG---TNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRL 428 (577)
Q Consensus 375 VLlDEtg~n~v~~LGRGTs---t~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~ 428 (577)
++||| +.+=+. ......+. ..+..+... +..+|++|....+....
T Consensus 119 l~iDe--------~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~i~~~~~~~~~~~~ 167 (195)
T 1jbk_A 119 LFIDE--------LHTMVGAGKADGAMDAG-NMLKPALARGELHCVGATTLDEYRQYI 167 (195)
T ss_dssp EEEET--------GGGGTT------CCCCH-HHHHHHHHTTSCCEEEEECHHHHHHHT
T ss_pred EEEeC--------HHHHhccCcccchHHHH-HHHHHhhccCCeEEEEeCCHHHHHHHH
Confidence 99999 544321 11112223 334444444 78889999888766544
No 47
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=79.71 E-value=1.8 Score=44.35 Aligned_cols=23 Identities=4% Similarity=-0.187 Sum_probs=17.8
Q ss_pred ccccccccCCCCCCCchhHHHHH
Q psy13263 297 EASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 297 ~a~~~~I~gPN~gGKsvy~k~va 319 (577)
.....+|+|||.+|||++++.+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 33456688999999999887664
No 48
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=79.65 E-value=4.5 Score=37.87 Aligned_cols=20 Identities=0% Similarity=-0.252 Sum_probs=17.1
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++|||..|||.+..+++.
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 46889999999999988765
No 49
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.59 E-value=3.6 Score=42.80 Aligned_cols=107 Identities=9% Similarity=-0.033 Sum_probs=53.1
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhcccc-cc-ccceecc-c--eeee--cccccchhhhhchhhhHHhhhcCCCc
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYL-RT-QCAHFGC-T--VIYS--EAQKKQKKYVLEVPSKYASKAKSNHQ 372 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~V-pA-~~a~l~~-d--~if~--~iG~~qStF~~Em~e~~~il~~a~~~ 372 (577)
..+|+|||.+|||++++.+.-.. ...-+..+ -- +..++.. . ..+. .++...-+|.. .++..+ ....
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---~La~aL--~~~P 197 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE---ALRSAL--REDP 197 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH--HHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HHHHHT--TSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcc--cCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---HHHHHh--hhCc
Confidence 45688999999999999874432 12212111 10 0111111 0 0000 11111112222 122233 3455
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhh
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLR 429 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~ 429 (577)
-++++|| .- |.. . +.++..+...|..+|++||..+....+.
T Consensus 198 dvillDE--------p~------d~e-~-~~~~~~~~~~G~~vl~t~H~~~~~~~~d 238 (356)
T 3jvv_A 198 DIILVGE--------MR------DLE-T-IRLALTAAETGHLVFGTLHTTSAAKTID 238 (356)
T ss_dssp SEEEESC--------CC------SHH-H-HHHHHHHHHTTCEEEEEESCSSHHHHHH
T ss_pred CEEecCC--------CC------CHH-H-HHHHHHHHhcCCEEEEEEccChHHHHHH
Confidence 6889999 42 221 2 2233334556888999999987766543
No 50
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.53 E-value=3.7 Score=40.59 Aligned_cols=22 Identities=9% Similarity=-0.194 Sum_probs=18.4
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+++|||.+|||++++.+..+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 3568899999999999987654
No 51
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=79.20 E-value=2.2 Score=44.06 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=50.2
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcce
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDT 452 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~ 452 (577)
.++|||| .-.|=++.....|...+- .|. .++.+|++||..++..++. . .+.|.-... +++
T Consensus 317 ~~LlLDE--------pt~~LD~~~~~~l~~~L~-~l~-~~~~vi~itH~~~~~~~~d---~--i~~l~k~~~-----~G~ 376 (415)
T 4aby_A 317 PSVVFDE--------VDAGIGGAAAIAVAEQLS-RLA-DTRQVLVVTHLAQIAARAH---H--HYKVEKQVE-----DGR 376 (415)
T ss_dssp SEEEESS--------TTTTCCHHHHHHHHHHHH-HHT-TTSEEEEECSCHHHHTTCS---E--EEEEEEEEE-----TTE
T ss_pred CEEEEEC--------CCCCCCHHHHHHHHHHHH-HHh-CCCEEEEEeCcHHHHhhcC---e--EEEEEEecc-----CCc
Confidence 7999999 655555444333332222 222 3789999999987764322 1 112211111 133
Q ss_pred EEEEEeecCCCCCCcHHHHHHHHc-C-CCHHHHHHHHHHH
Q psy13263 453 IVFLYKLVPGICPKSFGFNVAELA-G-IPEDVVKFGTTVA 490 (577)
Q Consensus 453 l~flYkL~~G~~~~SyGi~vArla-G-lP~~VI~rA~ei~ 490 (577)
++-..+... ..----++|+++ | +.++.++.|++++
T Consensus 377 ~~~~~~~l~---~~~~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 377 TVSHVRLLT---GDERLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp EEEEEEECC---SHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred eEEEEEECC---chhhHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 333322211 111234577766 4 6778888887765
No 52
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=79.15 E-value=3.9 Score=38.51 Aligned_cols=22 Identities=9% Similarity=-0.186 Sum_probs=18.7
Q ss_pred ccccCCCCCCCchhHHHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIK 322 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~ 322 (577)
.+++|||.+|||+.++.++-+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 4688999999999999887653
No 53
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=77.67 E-value=3.2 Score=40.36 Aligned_cols=59 Identities=10% Similarity=0.005 Sum_probs=37.0
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH-HHhh
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA-RRLR 429 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~-~l~~ 429 (577)
+.-.+..+....|+|+|| --.|=++.-...| +.++..+.+.+..+|++||+.+.. .++.
T Consensus 148 v~lAraL~~~p~lllLDE--------Pts~LD~~~~~~l-~~~l~~~~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDE--------PSLGLAPILVSEV-FEVIQKINQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp HHHHHHHTTCCSEEEEEC--------TTTTCCHHHHHHH-HHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred HHHHHHHHcCCCEEEEcC--------CcccCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 333444566778999999 5555555433333 344455555588999999998554 4443
No 54
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=76.75 E-value=3.6 Score=40.84 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=35.9
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
++..+.......|+|+|| --.|=++.-- ...+.++..+.+.+..+|++||+.+...
T Consensus 168 v~lAraL~~~p~lllLDE--------Pts~LD~~~~-~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDE--------PTSALDPEMV-GEVLSVMKQLANEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHHHHHHTTCCSEEEEES--------TTTTSCHHHH-HHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHHHHHHHCCCCEEEEeC--------CcccCCHHHH-HHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 333444566778999999 5445444322 3333455555555889999999987765
No 55
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=75.34 E-value=2.2 Score=43.13 Aligned_cols=41 Identities=17% Similarity=0.043 Sum_probs=26.8
Q ss_pred eEEeecccCcccccccccCCCCcchhh-HHHHHHHHHHhcCCeEEEecch
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCV-IARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~A-LA~AIlE~L~~~~~~~lfaTHy 421 (577)
.|++||| ||.-..+..... |...++++....+..+|+||++
T Consensus 216 ~lLiiDd--------ig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 216 PVLILDD--------IGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp SEEEEET--------CCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred CEEEEcC--------CCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 4889999 976544333333 6677887776567789999996
No 56
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=74.84 E-value=3.4 Score=40.82 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=34.7
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.+..+....|+|+|| --.|=++.-... .+.++..|.+.+..+|++||+.+...
T Consensus 165 AraL~~~p~lllLDE--------Pts~LD~~~~~~-~~~~l~~l~~~g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 165 ARALAMEPDVLLFDE--------PTSALDPELVGE-VLRIMQQLAEEGKTMVVVTHEMGFAR 217 (262)
T ss_dssp HHHHHTCCSEEEEES--------TTTTSCHHHHHH-HHHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred HHHHhcCCCEEEEeC--------CCccCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 344456678999999 555555443333 33445555555889999999987765
No 57
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=74.48 E-value=4.4 Score=41.87 Aligned_cols=21 Identities=5% Similarity=-0.201 Sum_probs=16.9
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+|.||+.+|||.+..+++.
T Consensus 63 iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999877764
No 58
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=72.06 E-value=4.4 Score=39.87 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=34.4
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
.+.......|+|+|| --.|=++.-...+ +.++..+.+. +..+|++||+.+...
T Consensus 140 AraL~~~p~lllLDE--------Pts~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 140 ARAIASECKLILLDE--------PTSALDLANQDIV-LSLLIDLAQSQNMTVVFTTHQPNQVV 193 (253)
T ss_dssp HHHHHTTCSEEEESS--------SSTTSCHHHHHHH-HHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred HHHHHcCCCEEEEeC--------CcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 344456678999999 5555554433333 3444555555 789999999987764
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=72.03 E-value=1.4 Score=47.45 Aligned_cols=26 Identities=4% Similarity=-0.110 Sum_probs=21.2
Q ss_pred ccccccccCCCCCCCchhHHHHHHHH
Q psy13263 297 EASSAGNIIPKAGVDKEYDEVMDEIK 322 (577)
Q Consensus 297 ~a~~~~I~gPN~gGKsvy~k~valI~ 322 (577)
.....+|+|||.+|||+.+++++-+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34456789999999999999987664
No 60
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=71.70 E-value=6.6 Score=42.40 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=52.2
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHhhcCCCcccccceeeeecCCCCcce
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDT 452 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~~~~~~V~n~hm~~~~~~~~~~~~~ 452 (577)
-++|+|| .-.|=++.....|. .++..|.+ +..+|++||..++...+. .+ +.|.-.... +.
T Consensus 419 ~~lilDE--------p~~gld~~~~~~i~-~~l~~~~~-~~~vi~itH~~~~~~~~d---~~--~~~~~~~~~-----~~ 478 (517)
T 4ad8_A 419 PSVVFDE--------VDAGIGGAAAIAVA-EQLSRLAD-TRQVLVVTHLAQIAARAH---HH--YKVEKQVED-----GR 478 (517)
T ss_dssp SEEEECS--------CSSSCCTHHHHHHH-HHHHHHHH-HSEEEEECCCHHHHHHSS---EE--EEEECCEET-----TE
T ss_pred CEEEEeC--------CcCCCCHHHHHHHH-HHHHHHhC-CCEEEEEecCHHHHHhCC---EE--EEEeccccC-----Cc
Confidence 7999999 76676665433333 33444554 789999999998887532 22 112111110 11
Q ss_pred EEEEEeecCCCCCCcHHHHHHHHcC--CCHHHHHHHHHHH
Q psy13263 453 IVFLYKLVPGICPKSFGFNVAELAG--IPEDVVKFGTTVA 490 (577)
Q Consensus 453 l~flYkL~~G~~~~SyGi~vArlaG--lP~~VI~rA~ei~ 490 (577)
..-..+ .....----++|+++| +-+..++.|++++
T Consensus 479 ~~~~~~---~l~~~~~~~ei~~~~~g~~~~~~~~~a~~ll 515 (517)
T 4ad8_A 479 TVSHVR---LLTGDERLEEIARMLSGNTSEAALEHARELL 515 (517)
T ss_dssp ECCEEE---ECCSHHHHHHHHHHSSSSCCHHHHHHHHHHH
T ss_pred eeeeee---eCCcchHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 111111 1112223357888875 5677777777765
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=71.55 E-value=5 Score=39.94 Aligned_cols=99 Identities=9% Similarity=-0.054 Sum_probs=50.3
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchhh--hHHhhhcCCCceEEeec
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPS--KYASKAKSNHQRVATKK 378 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e--~~~il~~a~~~sLVLlD 378 (577)
.+++||...|||...+.++.-. ..+ +. ..+|.....-...+...+.. ............+++||
T Consensus 40 lll~G~~GtGKT~la~~i~~~~--~~~-~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iD 105 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEA--KKR-GY-----------RVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLD 105 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH--HHT-TC-----------CEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHH--HHC-CC-----------EEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEc
Confidence 4578999999999999886532 111 21 12232222100111111110 00011111235799999
Q ss_pred ccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 379 KNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 379 Etg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
| +.+=............+++.+...+..+|++|+.
T Consensus 106 E--------i~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 106 D--------VQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp C--------GGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred C--------cccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9 7764432233344455666666667777777764
No 62
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=70.09 E-value=3.3 Score=41.21 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=33.9
Q ss_pred hhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHH
Q psy13263 360 PSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426 (577)
Q Consensus 360 ~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~ 426 (577)
+++.-.+......-|+|+|| --.|=++.--..| +.++..+.+ .+..+|++||..++..
T Consensus 163 QRv~lAraL~~~p~lllLDE--------Pts~LD~~~~~~i-~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDN--------ATSALDAGNQLRV-QRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEES--------TTTTCCHHHHHHH-HHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEEC--------CccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 34444455566778999999 4444443332222 223333332 2678999999987654
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.53 E-value=2.7 Score=42.22 Aligned_cols=21 Identities=10% Similarity=-0.255 Sum_probs=17.2
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+|+||+..|||...+.++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999987754
No 64
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.53 E-value=8.1 Score=33.96 Aligned_cols=113 Identities=6% Similarity=-0.121 Sum_probs=55.0
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccc------cchhhhhchhhhHHhhhcCCCceE
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQRV 374 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~------~qStF~~Em~e~~~il~~a~~~sL 374 (577)
.+++||...|||...+.++.-. .. ...|.... +...++..... ....+...+.+....+.......+
T Consensus 46 vll~G~~G~GKT~la~~~~~~~---~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 118 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKI---VQ--GDVPDSLK--GRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVV 118 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH---HT--TCSCTTTT--TCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred eEEECCCCCCHHHHHHHHHHHH---Hh--cCCcchhc--CCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceE
Confidence 4578999999999988775432 11 11111100 01122222111 001111122222223333455689
Q ss_pred EeecccCcccccccccCC----CCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 375 ATKKKNVENYVTPECRGT----GTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 375 VLlDEtg~n~v~~LGRGT----st~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
++||| +.+=. +......+...+...+...+..+|++|+..++....
T Consensus 119 l~iDe--------~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 168 (187)
T 2p65_A 119 MFIDE--------IHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFI 168 (187)
T ss_dssp EEETT--------GGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHHT
T ss_pred EEEeC--------HHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHHHHHHH
Confidence 99999 65432 111123334344444434478899999988765443
No 65
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.95 E-value=6.3 Score=42.27 Aligned_cols=21 Identities=5% Similarity=-0.138 Sum_probs=16.9
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..++.||-..|||.+-++++.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 345779999999999988764
No 66
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=67.88 E-value=5.1 Score=41.25 Aligned_cols=23 Identities=0% Similarity=-0.103 Sum_probs=18.9
Q ss_pred ccccccCCCCCCCchhHHHHHHH
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~valI 321 (577)
....|+|||.+|||.+..+++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999988754
No 67
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.72 E-value=14 Score=36.05 Aligned_cols=118 Identities=8% Similarity=0.015 Sum_probs=56.2
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchh-hhHHhhhcCCCceEEeecc
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVP-SKYASKAKSNHQRVATKKK 379 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~-e~~~il~~a~~~sLVLlDE 379 (577)
.+++||...|||...+.++... ...+. ++.. ..+++....-.+.|..+.. .+...+..+ ..++++|||
T Consensus 70 vll~G~~GtGKT~la~~la~~l---~~~~~-~~~~------~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDE 138 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLL---HRLGY-VRKG------HLVSVTRDDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDE 138 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH---HHTTS-SSSC------CEEEECGGGTCCSSTTCHHHHHHHHHHHH-TTSEEEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHH---HhcCC-cCCC------cEEEEcHHHhhhhcccccHHHHHHHHHhc-CCCEEEEEC
Confidence 4578999999999998887543 22221 1000 1111111110011111111 111222222 357999999
Q ss_pred cCcccccccccCCCC-cchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhcCCCc
Q psy13263 380 NVENYVTPECRGTGT-NDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLREEPNV 434 (577)
Q Consensus 380 tg~n~v~~LGRGTst-~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~~~~V 434 (577)
++.|++..+. .-+..+...++..|-.. ++.+|++|+..++..+....|.+
T Consensus 139 -----id~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 139 -----AYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp -----GGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred -----hhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 2113322211 11233444555555554 56888999887666555444544
No 68
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=66.55 E-value=4.9 Score=40.13 Aligned_cols=21 Identities=5% Similarity=-0.251 Sum_probs=17.5
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+++||...|||...+.++.
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999988764
No 69
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=66.49 E-value=9.7 Score=39.46 Aligned_cols=57 Identities=7% Similarity=-0.027 Sum_probs=36.0
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++-.+..+....|+|+|| --.|=++.-...+ +..+..|.+. +..+|++||+.+.+.
T Consensus 148 RvalAraL~~~P~lLLLDE--------P~s~LD~~~r~~l-~~~l~~l~~~~g~tvi~vTHd~~~~~ 205 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDE--------PFSNLDARMRDSA-RALVKEVQSRLGVTLLVVSHDPADIF 205 (353)
T ss_dssp HHHHHHHHTTCCSEEEEES--------TTTTSCGGGHHHH-HHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEC--------CcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3443445567778999999 5555554433333 3334455444 889999999977654
No 70
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.34 E-value=6 Score=38.66 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=34.3
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
+++..+.......|+|+|| --.|=++.....|. .++..+. .+..+|++||..++.
T Consensus 153 Rv~iAraL~~~p~lllLDE--------Pts~LD~~~~~~i~-~~l~~~~-~g~tviivtH~~~~~ 207 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDE--------ATSALDYESEHVIM-RNMHKIC-KGRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHHHHTTCCSEEEECC--------CCSCCCHHHHHHHH-HHHHHHH-TTSEEEEECSSGGGG
T ss_pred HHHHHHHHhcCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHc-CCCEEEEEeCCHHHH
Confidence 3333445566778999999 55555544333333 3334443 488999999998754
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.29 E-value=3.1 Score=41.54 Aligned_cols=22 Identities=0% Similarity=-0.384 Sum_probs=17.9
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+|+||...|||...+.++..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999887653
No 72
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=63.50 E-value=3.2 Score=40.64 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=30.9
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.......|+|+|| --.|=++..-..+ +.++..+.+.+..+|++||+.++..
T Consensus 157 aL~~~p~lllLDE--------Pts~LD~~~~~~l-~~~l~~l~~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 157 LLVLEPTYAVLDE--------TDSGLDIDALKVV-ARGVNAMRGPNFGALVITHYQRILN 207 (250)
T ss_dssp HHHHCCSEEEEEC--------GGGTTCHHHHHHH-HHHHHHHCSTTCEEEEECSSSGGGG
T ss_pred HHHcCCCEEEEeC--------CCcCCCHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHH
Confidence 3344567999999 5555544332222 3334444434788999999976543
No 73
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=62.85 E-value=5.5 Score=39.11 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=29.2
Q ss_pred EEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 374 VATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 374 LVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
|+|+|| --.|=++.--..+ +.++..+.+.+..+|++||+.++..
T Consensus 154 lllLDE--------Pts~LD~~~~~~l-~~~l~~l~~~g~tviivtHd~~~~~ 197 (249)
T 2qi9_C 154 LLLLDE--------PMNSLDVAQQSAL-DKILSALSQQGLAIVMSSHDLNHTL 197 (249)
T ss_dssp EEEESS--------TTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred EEEEEC--------CcccCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999 5555554433333 3344455544789999999988764
No 74
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.84 E-value=10 Score=40.32 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=55.0
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccchhhhhchh----hhHHhhhcCCCceEEe
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVP----SKYASKAKSNHQRVAT 376 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~----e~~~il~~a~~~sLVL 376 (577)
.++.||-..|||..-++++. ++|..+ +.+....-.|.|..|-. ++.. .......|+++
T Consensus 185 vLL~GPPGTGKTllAkAiA~------e~~~~f-----------~~v~~s~l~sk~vGese~~vr~lF~-~Ar~~aP~IIF 246 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAH------HTDCKF-----------IRVSGAELVQKYIGEGSRMVRELFV-MAREHAPSIIF 246 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHH------HHTCEE-----------EEEEGGGGSCSSTTHHHHHHHHHHH-HHHHTCSEEEE
T ss_pred eEEeCCCCCCHHHHHHHHHH------hhCCCc-----------eEEEhHHhhccccchHHHHHHHHHH-HHHHhCCceEe
Confidence 45679999999999988764 233221 11111111133333322 2211 22345679999
Q ss_pred ecccCcccccccccC--CCCcchhhHHHHHHHHHHh----c----CCeEEEecchHHHHHHhhcCC
Q psy13263 377 KKKNVENYVTPECRG--TGTNDGCVIARVTLEKFLQ----I----GCLTVFATHYHSVARRLREEP 432 (577)
Q Consensus 377 lDEtg~n~v~~LGRG--Tst~DG~ALA~AIlE~L~~----~----~~~~lfaTHy~eL~~l~~~~~ 432 (577)
||| +|.||+. .+...|-.-...++-.|+. . +..+|.||...+..+-+-..|
T Consensus 247 iDE-----iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRp 307 (405)
T 4b4t_J 247 MDE-----IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRP 307 (405)
T ss_dssp EES-----SSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHST
T ss_pred eec-----chhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCC
Confidence 999 4445532 2222222222223323322 1 447899999987766443333
No 75
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=61.92 E-value=12 Score=38.90 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=35.0
Q ss_pred hhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 361 SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 361 e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++-.+.......|+|+|| --.|=++.-...+ +..+..|.+. +..+|++||+.+.+.
T Consensus 135 RvalAraL~~~P~lLLLDE--------P~s~LD~~~~~~l-~~~l~~l~~~~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 135 RVALARALVTNPKILLLDE--------PLSALDPRTQENA-REMLSVLHKKNKLTVLHITHDQTEAR 192 (348)
T ss_dssp HHHHHHHTTSCCSEEEEES--------SSTTSCHHHHHHH-HHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEC--------ccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3444455567778999999 4444444322222 3344455444 889999999976553
No 76
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=61.91 E-value=4.5 Score=36.75 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=27.4
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhH--HHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVI--ARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~AL--A~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
....++|+|| .|+.-|-.+. ...++..+...+..+|++||..++..
T Consensus 80 ~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~ 127 (148)
T 1f2t_B 80 GEISLLILDE-----------PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 127 (148)
T ss_dssp SSCSEEEEES-----------CSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG
T ss_pred CCCCEEEEEC-----------CCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH
Confidence 3457999999 3444443322 22233333333678999999986543
No 77
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=61.75 E-value=15 Score=38.02 Aligned_cols=22 Identities=9% Similarity=-0.194 Sum_probs=18.4
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+++|||.+|||+.++.+...
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4568899999999999988654
No 78
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=61.22 E-value=11 Score=42.17 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=35.0
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHH-hcCCeEEEecchHHHHHHh
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~-~~~~~~lfaTHy~eL~~l~ 428 (577)
..+...-|+|+|| --.|=++.-...|. .++..|. +.+..+|++||+.++....
T Consensus 481 aL~~~p~lLlLDE--------PT~gLD~~~~~~i~-~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 481 ALGIPADIYLIDE--------PSAYLDSEQRIICS-KVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp HTTSCCSEEEECC--------TTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred HHHhCCCEEEEEC--------CCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 3455678999999 55555544333333 4455554 4589999999998877644
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=60.48 E-value=3.9 Score=39.06 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=20.5
Q ss_pred hhhccccCccCCcchhhhhhhhhhccCccc
Q psy13263 249 CSYMKESGCTGESTLLTQLCNYESQTPSGC 278 (577)
Q Consensus 249 l~~mkGsn~~GKStlLk~i~~~~i~i~~Gr 278 (577)
++.+-|+|-.|||||++.++.. ....|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl--~p~~G~ 51 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ--ALQSKQ 51 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH--HHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCcCCe
Confidence 4456799999999999998753 333454
No 80
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=57.12 E-value=6.8 Score=38.40 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=33.0
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
+..+....++|+|| --.|=++.....+ +.++..+.+.+..+|++||+.+..
T Consensus 166 raL~~~p~lllLDE--------Pts~LD~~~~~~l-~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 166 RALMTNPKMIVMDE--------PIAGVAPGLAHDI-FNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHTCCSEEEEES--------TTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHHcCCCEEEEeC--------CccCCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHH
Confidence 34455667999999 5555555433333 344455555588999999997544
No 81
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=57.08 E-value=3 Score=40.25 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=17.2
Q ss_pred hhhccccCccCCcchhhhhhh
Q psy13263 249 CSYMKESGCTGESTLLTQLCN 269 (577)
Q Consensus 249 l~~mkGsn~~GKStlLk~i~~ 269 (577)
+..+.|+|-.||||+++.++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 445679999999999998764
No 82
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=56.94 E-value=13 Score=41.37 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=33.2
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.|+|+|| --.|=++..-..| ..++..|.+.+..+|++||+.++...
T Consensus 224 ~lLlLDE--------PtsgLD~~~~~~l-~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 224 VLYVLDE--------PSIGLHQRDNDRL-IATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp CEEEEEC--------TTTTCCGGGHHHH-HHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CEEEEEC--------CccCCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 4999999 5556666554444 34556666668899999999987664
No 83
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=56.44 E-value=12 Score=40.97 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=33.9
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh-cCCeEEEecchHHHHHHh
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRL 428 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~-~~~~~lfaTHy~eL~~l~ 428 (577)
.+...-++|+|| --.|=++.-...|. .++..|.+ .+..+|++||+.++....
T Consensus 400 L~~~p~lLlLDE--------PT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~vsHdl~~~~~~ 452 (538)
T 3ozx_A 400 LAKEADLYVLDQ--------PSSYLDVEERYIVA-KAIKRVTRERKAVTFIIDHDLSIHDYI 452 (538)
T ss_dssp HHSCCSEEEEES--------TTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHcCCCEEEEeC--------CccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 344667999999 55555544433333 34455554 488999999998877643
No 84
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.43 E-value=12 Score=37.18 Aligned_cols=20 Identities=15% Similarity=-0.167 Sum_probs=17.0
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||+..|||...+.++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35789999999999988765
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=56.29 E-value=6.6 Score=40.61 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=30.0
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhH--HHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVI--ARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~AL--A~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
....++|+|| .|+.-|-... ...++..|.+.+..+|++||+.++..
T Consensus 302 ~~p~~lllDE-----------pt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~ 349 (365)
T 3qf7_A 302 GRLDAFFIDE-----------GFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSE 349 (365)
T ss_dssp TTCCEEEEES-----------CCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHT
T ss_pred CCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHH
Confidence 3557899999 4444443322 23445555555889999999998744
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.15 E-value=19 Score=41.30 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=51.4
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccccc--hhh----hhchhhhHHhhhcCCCce
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQ--KKY----VLEVPSKYASKAKSNHQR 373 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~~q--StF----~~Em~e~~~il~~a~~~s 373 (577)
..+++||...|||...+.++... .. ..+|..-. +...++.+.+.-. ..| ...+..+..........+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l---~~--~~~p~~l~--~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~ 265 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI---VK--GDVPEGLK--GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEV 265 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH---HH--TCSCTTST--TCEEEEECC-----------CHHHHHHHHHHHHHTTCSSE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH---hc--CCCchhhc--CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCe
Confidence 45688999999999998887542 11 12332111 1122222222100 112 222333332233334678
Q ss_pred EEeecccCccccccccc--CCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHH
Q psy13263 374 VATKKKNVENYVTPECR--GTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR 426 (577)
Q Consensus 374 LVLlDEtg~n~v~~LGR--GTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~ 426 (577)
+++||| +.. |....+|..-+..++..++.. +..+|++|...+...
T Consensus 266 iL~IDE--------i~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 266 ILFIDE--------LHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE 313 (854)
T ss_dssp EEEECC--------C-------------------HHHHHTTCCCEEEEECHHHHHH
T ss_pred EEEEec--------HHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhh
Confidence 999999 543 111223333333445555555 678999999888765
No 87
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.15 E-value=15 Score=39.79 Aligned_cols=21 Identities=5% Similarity=-0.159 Sum_probs=16.9
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..++.||-..|||.+-++++.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHh
Confidence 345779999999999888764
No 88
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=56.13 E-value=16 Score=36.27 Aligned_cols=19 Identities=16% Similarity=-0.172 Sum_probs=15.9
Q ss_pred cccCCCCCCCchhHHHHHH
Q psy13263 302 GNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~val 320 (577)
++.||...|||..-+.++.
T Consensus 40 Ll~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4669999999999988764
No 89
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=55.39 E-value=8 Score=39.28 Aligned_cols=51 Identities=6% Similarity=0.035 Sum_probs=31.6
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
......++|+|| --.|=++..-..| ..+++.+...+..+|++||..++...
T Consensus 269 l~~~p~~lllDE--------p~~~LD~~~~~~l-~~~l~~~~~~~~~vi~~sH~~~~~~~ 319 (339)
T 3qkt_A 269 LAGEISLLILDE--------PTPYLDEERRRKL-ITIMERYLKKIPQVILVSHDEELKDA 319 (339)
T ss_dssp TTTTTCEEEEEC--------CCTTCCHHHHHHH-HHHHHHTGGGSSEEEEEESCGGGGGG
T ss_pred hcCCCCEEEEEC--------CCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEEChHHHHHh
Confidence 345567999999 5555544433333 23444444456789999999776443
No 90
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=54.07 E-value=7.4 Score=38.52 Aligned_cols=37 Identities=11% Similarity=-0.156 Sum_probs=26.3
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecch
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy 421 (577)
..--+|+||| .-==+ + ..-+++.|.+.+..+|++-++
T Consensus 89 ~~~dvViIDE--------aQF~~----~---v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDE--------GQFFP----D---IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESS--------GGGCT----T---HHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCEEEEEc--------hhhhh----h---HHHHHHHHHhCCCEEEEEecc
Confidence 3446999999 22212 2 566778888888899999888
No 91
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=53.38 E-value=3.8 Score=41.30 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=30.5
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHH---hcCCeEEEecchHHHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARR 427 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~---~~~~~~lfaTHy~eL~~l 427 (577)
.+.......|+|+|| --.|=++.-- ..+.+.|+ ..+..+|++||+.++...
T Consensus 171 AraL~~~p~lllLDE--------Pts~LD~~~~----~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 171 ARAVYKDADLYLLDS--------PFGYLDVLTE----KEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHSCCSEEEEES--------TTTTCCHHHH----HHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHCCCCEEEEEC--------CcccCCHHHH----HHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 344455668999999 4333333222 23334332 126789999999877653
No 92
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.05 E-value=13 Score=40.11 Aligned_cols=20 Identities=5% Similarity=-0.130 Sum_probs=17.0
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||+..|||...+.++.
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998764
No 93
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.64 E-value=30 Score=34.07 Aligned_cols=21 Identities=5% Similarity=-0.260 Sum_probs=17.7
Q ss_pred ccccCCCCCCCchhHHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI 321 (577)
.+++||+..|||.+.+.++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988764
No 94
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=52.35 E-value=13 Score=36.43 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=19.3
Q ss_pred hhhhccccCccCCcchhhhhhhh
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNY 270 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~ 270 (577)
.++.+-|++..|||||+++++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46677899999999999998753
No 95
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=52.19 E-value=8.7 Score=37.80 Aligned_cols=50 Identities=6% Similarity=0.114 Sum_probs=29.9
Q ss_pred hhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHH
Q psy13263 366 KAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVA 425 (577)
Q Consensus 366 l~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~ 425 (577)
+.......|+|+|| --.|=++.-...+ +.++..+.+ +..+|++||..++.
T Consensus 168 raL~~~p~lllLDE--------Pts~LD~~~~~~i-~~~l~~l~~-~~tviivtH~~~~~ 217 (260)
T 2ghi_A 168 RCLLKDPKIVIFDE--------ATSSLDSKTEYLF-QKAVEDLRK-NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHCCSEEEEEC--------CCCTTCHHHHHHH-HHHHHHHTT-TSEEEEECSSGGGS
T ss_pred HHHHcCCCEEEEEC--------ccccCCHHHHHHH-HHHHHHhcC-CCEEEEEcCCHHHH
Confidence 33445667999999 4444444332222 233344432 77899999997653
No 96
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=51.12 E-value=17 Score=39.60 Aligned_cols=51 Identities=2% Similarity=-0.037 Sum_probs=32.6
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHH-hcCCeEEEecchHHHHHH
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARR 427 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~-~~~~~~lfaTHy~eL~~l 427 (577)
.+...-|+|+|| --.|=+..--..|. .++..|. +.+..+|++||+.++...
T Consensus 416 L~~~p~lLlLDE--------Pt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~vsHd~~~~~~ 467 (538)
T 1yqt_A 416 LLRDADIYLLDE--------PSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDY 467 (538)
T ss_dssp HTSCCSEEEEEC--------TTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred HHhCCCEEEEeC--------CcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 344667999999 54454444333333 3344454 348899999999877653
No 97
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=50.75 E-value=4.9 Score=39.78 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.7
Q ss_pred hhhccccCccCCcchhhhhhh
Q psy13263 249 CSYMKESGCTGESTLLTQLCN 269 (577)
Q Consensus 249 l~~mkGsn~~GKStlLk~i~~ 269 (577)
+..+-|+|-+|||||++.++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 555679999999999999875
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=50.32 E-value=22 Score=39.42 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=16.3
Q ss_pred ccccCCCCCCCchhHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~va 319 (577)
.+++|||.+|||+.++++.
T Consensus 48 iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp EECCCCTTSCHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHh
Confidence 4689999999999988764
No 99
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=49.84 E-value=27 Score=33.89 Aligned_cols=21 Identities=5% Similarity=-0.122 Sum_probs=17.1
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+++||...|||...+.++.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 346889999999999987754
No 100
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=49.26 E-value=12 Score=37.12 Aligned_cols=21 Identities=5% Similarity=-0.125 Sum_probs=17.4
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+++||...|||...+.++.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 356889999999999987764
No 101
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.23 E-value=15 Score=39.17 Aligned_cols=20 Identities=5% Similarity=-0.167 Sum_probs=16.6
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||-..|||..-++++.
T Consensus 209 iLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45679999999999998764
No 102
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.91 E-value=12 Score=36.72 Aligned_cols=43 Identities=5% Similarity=0.019 Sum_probs=38.1
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYH 422 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~ 422 (577)
.-|||||| +|.-..+..+.++.|+.+..+...+.-++.|+|..
T Consensus 85 pdlvIVDE--------lG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlq 127 (228)
T 2r8r_A 85 PSLVLVDE--------LAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQ 127 (228)
T ss_dssp CSEEEESC--------TTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCEEEEeC--------CCCCCcccchhHHHHHHHHHHHcCCCCEEEEcccc
Confidence 46999999 99977888889999999999888898999999965
No 103
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=48.74 E-value=11 Score=37.72 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=32.2
Q ss_pred hhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeE--EEecchHHHH
Q psy13263 365 SKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLT--VFATHYHSVA 425 (577)
Q Consensus 365 il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~--lfaTHy~eL~ 425 (577)
.+.......|+|+|| --.|=++..-..| +.++..+.+.+..+ |++||+.+..
T Consensus 173 AraL~~~p~lLlLDE--------Pts~LD~~~~~~l-~~~l~~l~~~g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 173 ARALMGQPQVLILDE--------PAAGLDFIARESL-LSILDSLSDSYPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHTCCSEEEEES--------TTTTCCHHHHHHH-HHHHHHHHHHCTTCEEEEEESCGGGC
T ss_pred HHHHhCCCCEEEEeC--------CccccCHHHHHHH-HHHHHHHHHCCCEEEEEEEecCHHHH
Confidence 344456678999999 5555554433333 33445555446777 9999997543
No 104
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=48.55 E-value=36 Score=35.78 Aligned_cols=21 Identities=0% Similarity=-0.270 Sum_probs=17.2
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
...|+||+.+|||.+..+++.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 345889999999999987754
No 105
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=46.47 E-value=24 Score=38.42 Aligned_cols=49 Identities=12% Similarity=-0.005 Sum_probs=33.3
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchh--hHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGC--VIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~--ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..+....|+|+|| =|+.-|-. .....+++.|.+.+..+|++||+.++..
T Consensus 172 aL~~~P~lLlLDE-----------PTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~ 222 (538)
T 1yqt_A 172 ALLRNATFYFFDE-----------PSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLD 222 (538)
T ss_dssp HHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3345667999999 34444433 2344556666666889999999987665
No 106
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=45.16 E-value=25 Score=36.51 Aligned_cols=21 Identities=0% Similarity=-0.307 Sum_probs=17.4
Q ss_pred ccccCCCCCCCchhHHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI 321 (577)
..|+||+.+|||.+..+++..
T Consensus 64 ~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999888754
No 107
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=44.74 E-value=25 Score=33.82 Aligned_cols=20 Identities=5% Similarity=-0.169 Sum_probs=16.5
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||...|||...+.++.
T Consensus 54 ~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 45789999999999887753
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=44.51 E-value=40 Score=31.64 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=23.3
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecc
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATH 420 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTH 420 (577)
--+|+||| ...=+ . .+ ...++.|...+..+|++.+
T Consensus 82 ~dvViIDE--------aqfl~---~--~~-v~~l~~l~~~~~~Vi~~Gl 116 (191)
T 1xx6_A 82 TEVIAIDE--------VQFFD---D--EI-VEIVNKIAESGRRVICAGL 116 (191)
T ss_dssp CSEEEECS--------GGGSC---T--HH-HHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEC--------CCCCC---H--HH-HHHHHHHHhCCCEEEEEec
Confidence 46999999 54411 1 12 3456777767889999988
No 109
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=44.28 E-value=56 Score=32.19 Aligned_cols=20 Identities=5% Similarity=-0.165 Sum_probs=16.4
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||...|||...+.++.
T Consensus 58 vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 45789999999999887743
No 110
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=43.64 E-value=48 Score=29.77 Aligned_cols=20 Identities=0% Similarity=-0.223 Sum_probs=16.5
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||...|||...+.++.
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35789999999999887754
No 111
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=43.52 E-value=43 Score=31.76 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=17.1
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||+..|||...+.++.
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 45889999999999998764
No 112
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.40 E-value=17 Score=36.47 Aligned_cols=49 Identities=10% Similarity=-0.054 Sum_probs=31.5
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHHh
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRL 428 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l~ 428 (577)
....++|+|| .-.|-++..-..|.. ++..+. .+..+|++||..++..++
T Consensus 240 ~~~~~lllDE--------p~~~LD~~~~~~l~~-~l~~~~-~~~~vi~~tH~~~~~~~~ 288 (322)
T 1e69_A 240 KPSPFYVLDE--------VDSPLDDYNAERFKR-LLKENS-KHTQFIVITHNKIVMEAA 288 (322)
T ss_dssp SCCSEEEEES--------CCSSCCHHHHHHHHH-HHHHHT-TTSEEEEECCCTTGGGGC
T ss_pred CCCCEEEEeC--------CCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECCHHHHhhC
Confidence 3446999999 666666655444443 334442 377899999997655443
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=43.08 E-value=57 Score=28.95 Aligned_cols=20 Identities=5% Similarity=-0.217 Sum_probs=16.4
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||...|||.+.+.++.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35789999999999887754
No 114
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=41.71 E-value=27 Score=38.81 Aligned_cols=51 Identities=8% Similarity=-0.010 Sum_probs=33.5
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
......-|+|+|| --.|=++... ...+.+++.|.+.+..+|++||+.++..
T Consensus 242 aL~~~P~lLlLDE--------PTs~LD~~~~-~~l~~~L~~l~~~g~tvIivsHdl~~~~ 292 (607)
T 3bk7_A 242 ALLRKAHFYFFDE--------PSSYLDIRQR-LKVARVIRRLANEGKAVLVVEHDLAVLD 292 (607)
T ss_dssp HHHSCCSEEEEEC--------TTTTCCHHHH-HHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHhcCCCEEEEEC--------CcccCCHHHH-HHHHHHHHHHHhcCCEEEEEecChHHHH
Confidence 3445667999999 3333333322 2334556666666889999999988765
No 115
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=41.59 E-value=18 Score=35.25 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=17.6
Q ss_pred ccccCCCCCCCchhHHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI 321 (577)
.+++||+..|||...+.++..
T Consensus 50 ~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHH
Confidence 457899999999999887764
No 116
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=41.59 E-value=47 Score=34.98 Aligned_cols=24 Identities=4% Similarity=0.086 Sum_probs=19.3
Q ss_pred hhhhccccCccCCcchhhhhhhhh
Q psy13263 248 ACSYMKESGCTGESTLLTQLCNYE 271 (577)
Q Consensus 248 dl~~mkGsn~~GKStlLk~i~~~~ 271 (577)
.++++.|....|||+|+.+++...
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777888899999999987643
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=41.23 E-value=8.4 Score=36.91 Aligned_cols=29 Identities=17% Similarity=-0.039 Sum_probs=20.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||++.+.++.
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444444568999999999999998765
No 118
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=41.23 E-value=38 Score=32.73 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=23.1
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecc
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATH 420 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTH 420 (577)
-.+|+||| +-- .+- . ..-++..|.+.+..+|++-|
T Consensus 90 ~dvViIDE--------aQ~----l~~-~-~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 90 TKVIGIDE--------VQF----FDD-R-ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp CCEEEECS--------GGG----SCT-H-HHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEec--------Ccc----CcH-H-HHHHHHHHHhCCCeEEEEec
Confidence 46999999 532 111 1 22345667777899999999
No 119
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=40.47 E-value=6.7 Score=37.96 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=21.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3444445556799999999999988764
No 120
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=40.46 E-value=97 Score=30.05 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||...|||.+.+.++.
T Consensus 41 vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999987754
No 121
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=39.70 E-value=51 Score=31.95 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=22.3
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecc
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATH 420 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTH 420 (577)
--+|+||| .-- .+- .+. -+|+.|...+..+|++-+
T Consensus 102 ~dvViIDE--------aQF----~~~-~~V-~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 102 MDVIAIDE--------VQF----FDG-DIV-EVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp CCEEEECC--------GGG----SCT-THH-HHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEC--------ccc----CCH-HHH-HHHHHHhhCCCEEEEEec
Confidence 46999999 222 111 122 456666666889999988
No 122
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=39.57 E-value=27 Score=42.21 Aligned_cols=118 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCchhHHHH-----------------------------------------------------
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVM----------------------------------------------------- 318 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~v----------------------------------------------------- 318 (577)
+|........+|+|||.+|||+..+.+
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~ 1132 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN 1132 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCC
Q ss_pred ------HHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCC
Q psy13263 319 ------DEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGT 392 (577)
Q Consensus 319 ------alI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGT 392 (577)
..|.......+..--...-.-+.|-..-.-|...| ..|-.++.-.+.......++|+|| -|
T Consensus 1133 ~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LS--gGq~Qrv~iARal~~~p~iLiLDE-----------pT 1199 (1284)
T 3g5u_A 1133 SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS--GGQKQRIAIARALVRQPHILLLDE-----------AT 1199 (1284)
T ss_dssp SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSC--HHHHHHHHHHHHHHHCCSSEEEES-----------CS
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccC--HHHHHHHHHHHHHHcCCCEEEEeC-----------Cc
Q ss_pred CCcchhhHHHHHHHHHHhc--CCeEEEecchHH
Q psy13263 393 GTNDGCVIARVTLEKFLQI--GCLTVFATHYHS 423 (577)
Q Consensus 393 st~DG~ALA~AIlE~L~~~--~~~~lfaTHy~e 423 (577)
+..|-.+ ...|.+.|.+. ++.+|++||..+
T Consensus 1200 s~lD~~~-~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1200 SALDTES-EKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp SSCCHHH-HHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred ccCCHHH-HHHHHHHHHHhCCCCEEEEEecCHH
No 123
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.42 E-value=26 Score=37.65 Aligned_cols=20 Identities=0% Similarity=-0.260 Sum_probs=16.5
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||-..|||.+-++++.
T Consensus 219 vLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHH
T ss_pred CceECCCCchHHHHHHHHHH
Confidence 45779999999999888764
No 124
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=39.18 E-value=43 Score=30.83 Aligned_cols=18 Identities=6% Similarity=-0.328 Sum_probs=13.7
Q ss_pred ccccCCCCCCCchhHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVM 318 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~v 318 (577)
.+++||..+|||+.+-.+
T Consensus 6 ~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSF 23 (184)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457899999999886433
No 125
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=39.14 E-value=21 Score=39.74 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=31.6
Q ss_pred CCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 369 SNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 369 a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
....-++|+|| --.|=++..... ...+++.|.+.+..+|++||+.+....
T Consensus 237 ~~~p~llllDE--------Pts~LD~~~~~~-l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 237 VQEADVYMFDE--------PSSYLDVKQRLN-AAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HSCCSEEEEEC--------TTTTCCHHHHHH-HHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HhCCCEEEEEC--------cccCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 34556999999 333333332222 344555666557889999999877653
No 126
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=39.07 E-value=6.7 Score=37.64 Aligned_cols=28 Identities=7% Similarity=-0.010 Sum_probs=21.2
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444455556799999999999998764
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=38.72 E-value=9.2 Score=34.88 Aligned_cols=22 Identities=5% Similarity=-0.384 Sum_probs=18.3
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+++|||.+|||++++.++-+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4568899999999999987643
No 128
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=38.48 E-value=10 Score=34.50 Aligned_cols=21 Identities=5% Similarity=-0.146 Sum_probs=17.4
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+++|||.+|||+..+.++.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999987654
No 129
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=37.86 E-value=7.9 Score=37.17 Aligned_cols=28 Identities=4% Similarity=-0.053 Sum_probs=21.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444444556799999999999998764
No 130
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=37.58 E-value=11 Score=35.48 Aligned_cols=28 Identities=4% Similarity=-0.186 Sum_probs=17.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+++|||.+|||+..+.++
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHH
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4444455567899999999999998775
No 131
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=37.19 E-value=9.4 Score=37.20 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|.... ...+++|||.+|||+.+++++-
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhC
Confidence 445555 5678999999999999987653
No 132
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=36.50 E-value=40 Score=39.52 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
+...|+|+|| --.|=++.+-..| ..++..|.+.+..+|++||+.++...
T Consensus 825 ~~p~LLILDE--------PTsGLD~~~~~~L-~~lL~~L~~~G~TVIvI~HdL~~i~~ 873 (916)
T 3pih_A 825 TGRTLYILDE--------PTVGLHFEDVRKL-VEVLHRLVDRGNTVIVIEHNLDVIKN 873 (916)
T ss_dssp CSSEEEEEES--------TTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred CCCCEEEEEC--------CCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 3457999999 5555555444333 45566677778899999999987543
No 133
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=36.37 E-value=8.9 Score=37.56 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=21.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444455567799999999999998764
No 134
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=36.31 E-value=8.4 Score=38.45 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=21.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444445556799999999999998774
No 135
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=36.21 E-value=10 Score=36.99 Aligned_cols=29 Identities=3% Similarity=0.054 Sum_probs=22.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.+++++-
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34444555677999999999999997754
No 136
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.04 E-value=8.6 Score=37.87 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=21.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3444444556799999999999998764
No 137
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=35.85 E-value=8.7 Score=37.83 Aligned_cols=28 Identities=4% Similarity=0.086 Sum_probs=21.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444455556799999999999998764
No 138
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=35.66 E-value=8.8 Score=38.00 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 4444455567799999999999998764
No 139
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=35.60 E-value=8.9 Score=37.16 Aligned_cols=28 Identities=4% Similarity=-0.112 Sum_probs=21.2
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444445556799999999999998764
No 140
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=35.56 E-value=10 Score=37.36 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=22.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~valI 321 (577)
+|........+|+|||.+|||+.+++++-+
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444456679999999999999988653
No 141
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=34.78 E-value=9.4 Score=36.97 Aligned_cols=29 Identities=7% Similarity=-0.059 Sum_probs=21.8
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.+++++-
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444445667999999999999998753
No 142
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=34.63 E-value=32 Score=37.62 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=31.5
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.+...-++|+|| --.|=++..-..| ..+++.|.+ +..+|++||+.+....
T Consensus 153 L~~~p~illlDE--------Pts~LD~~~~~~l-~~~l~~l~~-g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 153 LLREADVYIFDQ--------PSSYLDVRERMNM-AKAIRELLK-NKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHSCCSEEEEES--------TTTTCCHHHHHHH-HHHHHHHCT-TSEEEEECSCHHHHHH
T ss_pred HHcCCCEEEEEC--------CcccCCHHHHHHH-HHHHHHHhC-CCEEEEEEeChHHHHh
Confidence 345567999999 3333333333223 345555644 8899999999876653
No 143
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=34.47 E-value=37 Score=40.04 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=34.1
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
...|+|+|| --.|-++.+-..| +.++..|.+.+..+|++||+.++..
T Consensus 866 ~p~lLILDE--------PTsGLD~~~~~~l-~~lL~~L~~~G~TVIvisHdl~~i~ 912 (972)
T 2r6f_A 866 GRTLYILDE--------PTTGLHVDDIARL-LDVLHRLVDNGDTVLVIEHNLDVIK 912 (972)
T ss_dssp SCEEEEEEC--------TTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred CCCEEEEEC--------CCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 358999999 6666666554444 4455667767889999999988753
No 144
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=33.92 E-value=9.7 Score=37.98 Aligned_cols=28 Identities=0% Similarity=-0.108 Sum_probs=21.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3444455566799999999999998764
No 145
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=33.66 E-value=10 Score=37.43 Aligned_cols=28 Identities=4% Similarity=-0.122 Sum_probs=21.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3444444456799999999999998764
No 146
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=33.36 E-value=10 Score=36.49 Aligned_cols=29 Identities=3% Similarity=-0.109 Sum_probs=22.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.+++++-
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44444555667999999999999998753
No 147
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.04 E-value=29 Score=36.95 Aligned_cols=20 Identities=15% Similarity=-0.024 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||...|||.+.+.++.
T Consensus 53 vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 45789999999999987764
No 148
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=33.02 E-value=10 Score=36.75 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.+++++-
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444445567999999999999987753
No 149
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=32.81 E-value=52 Score=38.19 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=33.4
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
..|+|||| --.|=++.+-..| +.++..|.+.+..+|++||+.++..
T Consensus 752 p~lLILDE--------PTsGLD~~~~~~l-~~lL~~L~~~G~tVIvisHdl~~i~ 797 (842)
T 2vf7_A 752 GTVYVLDE--------PTTGLHPADVERL-QRQLVKLVDAGNTVIAVEHKMQVVA 797 (842)
T ss_dssp CEEEEEEC--------TTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred CCEEEEEC--------CCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 58999999 6666665544433 3455667777899999999988764
No 150
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=32.71 E-value=11 Score=36.89 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=21.1
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444444556799999999999998774
No 151
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=32.57 E-value=11 Score=37.07 Aligned_cols=28 Identities=7% Similarity=-0.047 Sum_probs=21.2
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3444445556799999999999998764
No 152
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=32.37 E-value=55 Score=30.71 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||...|||...+.++.
T Consensus 42 vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999987764
No 153
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=32.30 E-value=39 Score=37.06 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCceEEeecccCcccccccccCCCCcchhh--HHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCV--IARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~A--LA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
....++|+|| -|+.-|-.+ .....+..+.+ +..+|++||..+....
T Consensus 500 ~~p~illlDE-----------pts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 547 (595)
T 2yl4_A 500 KNPKILLLDE-----------ATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKN 547 (595)
T ss_dssp HCCSEEEEEC-----------CCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHH
T ss_pred cCCCEEEEEC-----------cccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHc
Confidence 3567999999 455555432 22222333333 7899999999887654
No 154
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=32.22 E-value=1.2e+02 Score=27.43 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhhccC
Q psy13263 481 DVVKFGTTVAFQMEARHN--------LRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDL 543 (577)
Q Consensus 481 ~VI~rA~ei~~~le~~~~--------~~~~~~~L~~~~~~~~~~ld~~~l~~l~~~L~~~~~~~~~~l~~~ 543 (577)
.-|.+|..|+..|....+ +..++.-+...++...-.-|.+.|...+..|..+++.+++-....
T Consensus 54 ~~i~KA~~Ii~eL~~sLd~egeiA~nL~~LY~y~~~~L~~Ani~~D~~~ldev~~ll~~LreaW~~i~~~~ 124 (145)
T 1vh6_A 54 ENLIKAQNIIQELNFTLNRNIELSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRDAWKQAIQSE 124 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888877765442 333444344444445555678899999999999999998765544
No 155
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=32.21 E-value=11 Score=37.01 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.+++++-
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34444445567999999999999987753
No 156
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=32.21 E-value=45 Score=34.11 Aligned_cols=21 Identities=5% Similarity=-0.095 Sum_probs=17.0
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..++.||...|||.+.+.++.
T Consensus 150 ~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999887753
No 157
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=31.87 E-value=20 Score=42.42 Aligned_cols=94 Identities=51% Similarity=0.986 Sum_probs=88.4
Q ss_pred CCCccccccccccCCCCccccCCCCCCCCCCCCCccccCcccccccCcchhhHHHHHhhCcCchhhhHhhhhHHHhhhhh
Q psy13263 161 GAQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDA 240 (577)
Q Consensus 161 ~~~~~~~~~~~fl~p~~i~D~~~r~p~~p~Yd~sTl~Ipp~~l~~~TPl~rQ~~~lKa~~~D~vLLfrvG~FYElf~~DA 240 (577)
.+..|.|++|+||+|++|||++||+|+||+|||+|||||++++.++||||+|||++|++|||+|+|||+|+|||+|++||
T Consensus 23 ~~~~~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA 102 (1022)
T 2o8b_B 23 RPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDA 102 (1022)
T ss_dssp -CCSCGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHH
T ss_pred cccccccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEEehhhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccc
Q psy13263 241 VIGADELACSYMKE 254 (577)
Q Consensus 241 ~i~a~eLdl~~mkG 254 (577)
++++++|+|++++|
T Consensus 103 ~~~a~~L~i~lt~~ 116 (1022)
T 2o8b_B 103 LIGVSELGLVFMKG 116 (1022)
T ss_dssp HHHHHHHCCCCCSS
T ss_pred HHHHHhcCeEEecC
Confidence 99888887776543
No 158
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=31.82 E-value=52 Score=35.92 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=29.9
Q ss_pred hcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh--cCCeEEEecchHHHHHH
Q psy13263 367 AKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYHSVARR 427 (577)
Q Consensus 367 ~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~--~~~~~lfaTHy~eL~~l 427 (577)
.......++|+|| -|+.-|-..- ..|.+.|.+ ++..+|++||..+....
T Consensus 494 al~~~p~illlDE-----------pts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~ 544 (582)
T 3b5x_A 494 ALLRDAPVLILDE-----------ATSALDTESE-RAIQAALDELQKNKTVLVIAHRLSTIEQ 544 (582)
T ss_pred HHHcCCCEEEEEC-----------ccccCCHHHH-HHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 3344667999999 4555553321 123333332 27899999999876653
No 159
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=31.55 E-value=44 Score=39.51 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=33.8
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
...|+|||| --.|-++.+-..|. .++..|.+.+..+|++||+.++..
T Consensus 884 ~p~lLILDE--------PTsGLD~~~~~~l~-~lL~~L~~~G~TVIvisHdl~~i~ 930 (993)
T 2ygr_A 884 GRTVYILDE--------PTTGLHFDDIRKLL-NVINGLVDKGNTVIVIEHNLDVIK 930 (993)
T ss_dssp SSEEEEEES--------TTTTCCHHHHHHHH-HHHHHHHHTTCEEEEECCCHHHHT
T ss_pred CCCEEEEEC--------CCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEcCCHHHHH
Confidence 358999999 66666665544443 445566666889999999988753
No 160
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=31.52 E-value=20 Score=36.80 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=27.0
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVA 425 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~ 425 (577)
..++|+|| ...|-++.-.. .+++.|... +..+|++||..++.
T Consensus 306 ~~~lllDE--------p~~~LD~~~~~----~l~~~l~~~~~~~~vi~~th~~~~~ 349 (371)
T 3auy_A 306 VECIILDE--------PTVYLDENRRA----KLAEIFRKVKSIPQMIIITHHRELE 349 (371)
T ss_dssp CSEEEEES--------TTTTCCHHHHH----HHHHHHHHCCSCSEEEEEESCGGGG
T ss_pred CCeEEEeC--------CCCcCCHHHHH----HHHHHHHHhccCCeEEEEEChHHHH
Confidence 57999999 55555444333 344444442 45799999997653
No 161
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=31.34 E-value=12 Score=37.18 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=21.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444455566799999999999998774
No 162
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.90 E-value=18 Score=41.47 Aligned_cols=23 Identities=4% Similarity=-0.152 Sum_probs=18.7
Q ss_pred ccccccCCCCCCCchhHHHHHHH
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~valI 321 (577)
...++.||+..|||...+.++..
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999988754
No 163
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=29.52 E-value=13 Score=36.54 Aligned_cols=29 Identities=3% Similarity=-0.007 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.+++++-
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444445567999999999999998753
No 164
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=29.47 E-value=82 Score=38.19 Aligned_cols=115 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCchhHHHH-----------------------------------------------------
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVM----------------------------------------------------- 318 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~v----------------------------------------------------- 318 (577)
+|........+|.||+.+|||+..+.+
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCC
Q ss_pred ------HHHHHHHHHhccccccccceeccceeeecccccchhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCC
Q psy13263 319 ------DEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGT 392 (577)
Q Consensus 319 ------alI~~imaqig~~VpA~~a~l~~d~if~~iG~~qStF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGT 392 (577)
..|.......+..=--..-.-|.|-..-.-|...| ..|-.++.-.+..-....++|||| -|
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS--gGQrQriaiARAllr~~~ILiLDE-----------aT 1245 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS--GGQKQRIAIARALVRNPKILLLDE-----------AT 1245 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC--HHHHHHHHHHHHHHSCCSEEEEES-----------CC
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC--HHHHHHHHHHHHHHhCCCEEEEeC-----------cc
Q ss_pred CCcchhhHHHHHHHHHHhc--CCeEEEecc
Q psy13263 393 GTNDGCVIARVTLEKFLQI--GCLTVFATH 420 (577)
Q Consensus 393 st~DG~ALA~AIlE~L~~~--~~~~lfaTH 420 (577)
+..|-.. -..|.+.|.+. +|.+|+.||
T Consensus 1246 SaLD~~t-E~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1246 SALDTES-EKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp CSTTSHH-HHHHHHHHTTTSSSSEEEEECS
T ss_pred ccCCHHH-HHHHHHHHHHHcCCCEEEEecc
No 165
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.07 E-value=59 Score=32.49 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=18.3
Q ss_pred ccccccCCCCCCCchhHHHHHHH
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~valI 321 (577)
...+++|||..|||+....++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999998888754
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.01 E-value=15 Score=33.08 Aligned_cols=20 Identities=5% Similarity=-0.248 Sum_probs=16.7
Q ss_pred cccccCCCCCCCchhHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~va 319 (577)
..+++|||.+|||++.+.++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45688999999999988764
No 167
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=28.77 E-value=18 Score=34.07 Aligned_cols=29 Identities=3% Similarity=-0.270 Sum_probs=19.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+|+|||.+|||+.++.+.-
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444555667899999999999987754
No 168
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.57 E-value=41 Score=35.97 Aligned_cols=20 Identities=10% Similarity=-0.155 Sum_probs=16.4
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||-..|||..-++++.
T Consensus 218 vLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred eEEECcCCCCHHHHHHHHHH
Confidence 45779999999999887764
No 169
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=28.51 E-value=18 Score=33.46 Aligned_cols=22 Identities=14% Similarity=-0.139 Sum_probs=18.3
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+++|||.+|||+.++.++-+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4568899999999999987654
No 170
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=28.48 E-value=54 Score=38.75 Aligned_cols=47 Identities=9% Similarity=-0.001 Sum_probs=32.1
Q ss_pred cCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 368 KSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 368 ~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.....-|+|+|| - |+--|-.+ ...+++.|.+.+..+|++||+.+...
T Consensus 916 L~~~P~LLLLDE--------P---T~gLD~~s-~~~L~~~L~~~g~tVIiISHD~e~v~ 962 (986)
T 2iw3_A 916 TWQRPHLIVLDE--------P---TNYLDRDS-LGALSKALKEFEGGVIIITHSAEFTK 962 (986)
T ss_dssp HTTCCSEEEEEC--------G---GGTCCHHH-HHHHHHHHHSCSSEEEEECSCHHHHT
T ss_pred HHhCCCEEEEEC--------C---ccCCCHHH-HHHHHHHHHHhCCEEEEEECCHHHHH
Confidence 344678999999 3 44444333 34566666665778999999987764
No 171
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=28.18 E-value=61 Score=32.86 Aligned_cols=21 Identities=5% Similarity=-0.114 Sum_probs=17.1
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+++||...|||...+.++.
T Consensus 119 ~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999988753
No 172
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.30 E-value=51 Score=36.95 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=58.4
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecccc------cchhhhhchhhhHHhhhcCCCce
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQK------KQKKYVLEVPSKYASKAKSNHQR 373 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~iG~------~qStF~~Em~e~~~il~~a~~~s 373 (577)
..+++||...|||...+.++... .. ..+|.... ++..+..+.+. ....|...+..+...+. ...++
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l---~~--~~v~~~~~--~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~-~~~~~ 280 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRI---VQ--GDVPEVMA--DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE-QDTNS 280 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---HH--TCSCGGGT--TCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS-SSSCE
T ss_pred CeEEEcCCCCCHHHHHHHHHHHH---Hh--CCCChhhc--CCEEEEEcHHHHhccccccchHHHHHHHHHHHHH-hcCCe
Confidence 45688999999999998877532 11 12332110 00111111111 00112222333322222 22468
Q ss_pred EEeecccCcccccc-cccCCCCcchhhHHHHHHHHHHhc-CCeEEEecchHHHHHHhhcCCCc
Q psy13263 374 VATKKKNVENYVTP-ECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVARRLREEPNV 434 (577)
Q Consensus 374 LVLlDEtg~n~v~~-LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy~eL~~l~~~~~~V 434 (577)
+++||| ++. +|.|.. .+|..-+..++..++.. +..+|.+|...++.......+.+
T Consensus 281 iL~IDE-----i~~l~~~~~~-~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL 337 (758)
T 1r6b_X 281 ILFIDE-----IHTIIGAGAA-SGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_dssp EEEETT-----TTTTTTSCCS-SSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSS
T ss_pred EEEEec-----hHHHhhcCCC-CcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHH
Confidence 999999 211 233322 22333333444444444 67899999988775544433333
No 173
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=27.18 E-value=19 Score=35.89 Aligned_cols=20 Identities=0% Similarity=-0.281 Sum_probs=15.9
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+|+||...||+.+.+.+..
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHH
Confidence 35789999999998887654
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=27.14 E-value=1.1e+02 Score=30.00 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=25.3
Q ss_pred CceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHH
Q psy13263 371 HQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHS 423 (577)
Q Consensus 371 ~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~e 423 (577)
...+++||| +.+=+ |.....+++.+|-.. ++.+|++|.+..
T Consensus 105 ~~~vliiDE--------i~~l~----~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDE--------FDRSG----LAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEES--------CCCGG----GHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEEC--------CcccC----cHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 678999999 65433 122334455555442 678888887754
No 175
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=26.94 E-value=52 Score=30.41 Aligned_cols=45 Identities=4% Similarity=-0.140 Sum_probs=26.4
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVAR 426 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~ 426 (577)
.-++|+|| .-.|=++..-..+.. ++..+.. +..+|++||...+..
T Consensus 87 ~~~llLDE--------p~a~LD~~~~~~~~~-~l~~~~~-~~~~ivith~~~~~~ 131 (173)
T 3kta_B 87 APFYLFDE--------IDAHLDDANVKRVAD-LIKESSK-ESQFIVITLRDVMMA 131 (173)
T ss_dssp CSEEEEES--------TTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSCHHHHT
T ss_pred CCEEEECC--------CccCCCHHHHHHHHH-HHHHhcc-CCEEEEEEecHHHHH
Confidence 35899999 655555443333322 2333322 567889999876544
No 176
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=26.61 E-value=1.1e+02 Score=31.65 Aligned_cols=20 Identities=5% Similarity=-0.203 Sum_probs=16.5
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+|.||...|||.+..+++.
T Consensus 126 iLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45779999999999988754
No 177
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=26.58 E-value=1.6e+02 Score=29.96 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhccccCccCCcchhhhhhhhhhccCcccccCcccccccccccccccc--cccccc-cCCCCCCCchhHHHHHHHHHHH
Q psy13263 249 CSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKE--ASSAGN-IIPKAGVDKEYDEVMDEIKSIE 325 (577)
Q Consensus 249 l~~mkGsn~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~~~~n~F~~~~--a~~~~I-~gPN~gGKsvy~k~valI~~im 325 (577)
+..+-|+|..||||+++.++. +....|.-..+...--+-..+...-. ++..++ +++...+......+...|. .-
T Consensus 131 vi~lvG~nGaGKTTll~~Lag--~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~-~~ 207 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLAN--WLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ-HA 207 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH-HH
Q ss_pred HHhccccccccceeccceeeecccccc--hhhhhchhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHH
Q psy13263 326 KEIQTYLRTQCAHFGCTVIYSEAQKKQ--KKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARV 403 (577)
Q Consensus 326 aqig~~VpA~~a~l~~d~if~~iG~~q--StF~~Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~A 403 (577)
..-+.-+ .+.-..|..+ ..++.+|..+...+. ....+.++|. -...-+..
T Consensus 208 ~~~~~d~----------vliDtaG~~~~~~~l~~eL~~i~ral~--~de~llvLDa----------------~t~~~~~~ 259 (328)
T 3e70_C 208 KARGIDV----------VLIDTAGRSETNRNLMDEMKKIARVTK--PNLVIFVGDA----------------LAGNAIVE 259 (328)
T ss_dssp HHHTCSE----------EEEEECCSCCTTTCHHHHHHHHHHHHC--CSEEEEEEEG----------------GGTTHHHH
T ss_pred Hhccchh----------hHHhhccchhHHHHHHHHHHHHHHHhc--CCCCEEEEec----------------HHHHHHHH
Q ss_pred HHHHHHhc-CCeEEEecchHH
Q psy13263 404 TLEKFLQI-GCLTVFATHYHS 423 (577)
Q Consensus 404 IlE~L~~~-~~~~lfaTHy~e 423 (577)
+++.|.+. +..+|+.||.-+
T Consensus 260 ~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 260 QARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHHHhcCCCEEEEeCcCC
No 178
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=26.53 E-value=25 Score=32.51 Aligned_cols=23 Identities=0% Similarity=-0.197 Sum_probs=19.0
Q ss_pred cccccCCCCCCCchhHHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEIK 322 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI~ 322 (577)
..+|+|||.+|||++.+.++.+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999886643
No 179
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=26.50 E-value=24 Score=37.13 Aligned_cols=61 Identities=5% Similarity=0.049 Sum_probs=0.0
Q ss_pred chhhhHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchHHHHHHhhc
Q psy13263 358 EVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYHSVARRLRE 430 (577)
Q Consensus 358 Em~e~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~eL~~l~~~ 430 (577)
+-.+++-.+.......|+|+|| --.|=++ .....+.+.|.+. ++.+|++||+.+...++..
T Consensus 160 qrQRvalARAL~~~P~lLLLDE--------Pts~LD~----~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDr 222 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDE--------PSAHLDP----VTYQIIRRTLKQAFADCTVILCEARIEAMLECDQ 222 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEES--------HHHHSCH----HHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSE
T ss_pred HHHHHHHHHHHhcCCCEEEEeC--------CccCCCH----HHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCE
No 180
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=26.29 E-value=84 Score=36.45 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=33.6
Q ss_pred eEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 373 RVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 373 sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
.|+|||| ---|=++.+-. -.+.+++.|.+.+..+|+++|+.++...
T Consensus 401 ~llILDE--------PT~~Ld~~~~~-~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 401 VVYVLDE--------PSAGLHPADTE-ALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp CEEEEEC--------TTTTCCGGGHH-HHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred eEEEeeC--------ccccCCHHHHH-HHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 5999999 44444444443 3455677887779999999999987654
No 181
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=26.10 E-value=97 Score=36.68 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.4
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
..|+|||| ---|=++.+- .-.+.+++.|.+.+..+|+++|+.++...
T Consensus 542 ~~llILDE--------PTagLdp~~~-~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ 588 (993)
T 2ygr_A 542 GVLYVLDE--------PSIGLHQRDN-RRLIETLTRLRDLGNTLIVVEHDEDTIEH 588 (993)
T ss_dssp SCEEEEEC--------TTTTCCHHHH-HHHHHHHHHHHHTTCEEEEECCCHHHHHT
T ss_pred CcEEEEeC--------cccCCCHHHH-HHHHHHHHHHHHcCCEEEEECCCHHHHHh
Confidence 36999999 4344444333 34456677887779999999999987664
No 182
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=25.90 E-value=72 Score=37.33 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=37.9
Q ss_pred hHHhhhcCCCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 362 KYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 362 ~~~il~~a~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
++..+...-...|+|+|| ---|=++.+-..|. .++..|.+.+..+|++||+.++...
T Consensus 475 LAraL~~~p~~~lllLDE--------PT~gLD~~~~~~l~-~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 475 LATQIGSGLTGVIYVLDE--------PTIGLHPRDTERLI-KTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp HHHHHHTTCCSCEEEEEC--------TTTTCCGGGHHHHH-HHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred HHHHHhhCCCCcEEEEEC--------CccCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 444444333346999999 66666666654444 4456666668899999999987764
No 183
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=25.86 E-value=38 Score=35.26 Aligned_cols=45 Identities=0% Similarity=-0.181 Sum_probs=28.4
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh---cCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ---IGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~---~~~~~lfaTHy~eL~~ 426 (577)
....++|||| .-.|=++.-.. .+++.|.. .+..+|++||..++..
T Consensus 354 ~~~~~lllDE--------p~~~LD~~~~~----~l~~~l~~~~~~~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 354 QPSPFFVLDE--------VDAALDITNVQ----RIAAYIRRHRNPDLQFIVISLKNTMFE 401 (430)
T ss_dssp SCCSEEEESS--------TTTTCCHHHHH----HHHHHHHHHCBTTBEEEEECSCHHHHT
T ss_pred CCCCEEEeCC--------CcccCCHHHHH----HHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence 4557999999 65555444332 33344433 2578999999976654
No 184
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=25.64 E-value=69 Score=29.53 Aligned_cols=45 Identities=9% Similarity=0.026 Sum_probs=27.7
Q ss_pred ceEEeecccCcccccccccCC--CCcchhhHHHHHHHHHHhcCCeEEEecchHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGT--GTNDGCVIARVTLEKFLQIGCLTVFATHYHSV 424 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGT--st~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL 424 (577)
-.+|+||+ +.... +..+-..+...+.+.+.+.++.+|+++|...-
T Consensus 129 ~~~vviD~--------~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 129 AKRVVVDS--------VTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp CCEEEEET--------SGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred CCEEEECC--------chHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 35899999 66554 22222344444555554558999999998753
No 185
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=25.61 E-value=49 Score=36.32 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=27.7
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHh--cCCeEEEecchHHHHH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYHSVAR 426 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~--~~~~~lfaTHy~eL~~ 426 (577)
....++|+|| -|+.-|-. -...|.+.|.+ +++.+|++||..+...
T Consensus 496 ~~p~illlDE-----------pts~LD~~-~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 542 (587)
T 3qf4_A 496 KKPKVLILDD-----------CTSSVDPI-TEKRILDGLKRYTKGCTTFIITQKIPTAL 542 (587)
T ss_dssp TCCSEEEEES-----------CCTTSCHH-HHHHHHHHHHHHSTTCEEEEEESCHHHHT
T ss_pred cCCCEEEEEC-----------CcccCCHH-HHHHHHHHHHHhCCCCEEEEEecChHHHH
Confidence 3567889999 45544432 12223333322 3889999999987654
No 186
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=25.52 E-value=15 Score=36.82 Aligned_cols=28 Identities=4% Similarity=-0.103 Sum_probs=21.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|........+|+|||.+|||+.+++++
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4444455566799999999999998764
No 187
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=25.48 E-value=16 Score=36.03 Aligned_cols=27 Identities=4% Similarity=0.016 Sum_probs=20.4
Q ss_pred cccccccccccccCCCCCCCchhHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMD 319 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~va 319 (577)
+|... ....+|+|||.+|||+++++++
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHh
Confidence 34444 4456799999999999998764
No 188
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=25.36 E-value=1e+02 Score=36.39 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=34.5
Q ss_pred ceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhcCCeEEEecchHHHHHH
Q psy13263 372 QRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARR 427 (577)
Q Consensus 372 ~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~~~~~lfaTHy~eL~~l 427 (577)
..|+|||| ---|=++.+- .-.+.+++.|.+.+..+|+++|+.+....
T Consensus 525 ~~llILDE--------PTagLdp~~~-~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 525 GVLYVLDE--------PSIGLHQRDN-DRLIATLKSMRDLGNTLIVVEHDEDTMLA 571 (972)
T ss_dssp SCEEEEEC--------TTTTCCGGGH-HHHHHHHHHHHTTTCEEEEECCCHHHHHS
T ss_pred CCEEEEeC--------cccCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 36999999 5555555444 34456777887779999999999987654
No 189
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=24.79 E-value=64 Score=33.24 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=16.8
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
...|.||...|||.+..+++.
T Consensus 65 ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 345779999999999877764
No 190
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=24.64 E-value=30 Score=32.84 Aligned_cols=22 Identities=5% Similarity=-0.197 Sum_probs=19.0
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+++|||.+|||+.+++++-+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999998765
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=24.53 E-value=85 Score=31.85 Aligned_cols=20 Identities=5% Similarity=-0.167 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||...|||...+.++.
T Consensus 87 iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 45789999999999987764
No 192
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=24.05 E-value=25 Score=32.25 Aligned_cols=22 Identities=0% Similarity=-0.168 Sum_probs=18.1
Q ss_pred ccccccCCCCCCCchhHHHHHH
Q psy13263 299 SSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 299 ~~~~I~gPN~gGKsvy~k~val 320 (577)
...+++|||.+|||+..+.++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999988754
No 193
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=24.02 E-value=22 Score=32.60 Aligned_cols=22 Identities=9% Similarity=-0.012 Sum_probs=18.4
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+|+|||.+|||+..+.++.+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999987654
No 194
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=23.72 E-value=55 Score=32.80 Aligned_cols=40 Identities=15% Similarity=0.010 Sum_probs=26.1
Q ss_pred CCceEEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc--CCeEEEecchH
Q psy13263 370 NHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI--GCLTVFATHYH 422 (577)
Q Consensus 370 ~~~sLVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~--~~~~lfaTHy~ 422 (577)
....+|+||| .-+=|. .-+.+++++|-+- ++.+|++|+..
T Consensus 107 ~~~kvviIde--------ad~l~~-----~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 107 GGAKVVWVTD--------AALLTD-----AAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSCEEEEESC--------GGGBCH-----HHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCcEEEEECc--------hhhcCH-----HHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 3578999999 544331 2345677776554 56778888875
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=23.46 E-value=92 Score=30.85 Aligned_cols=20 Identities=5% Similarity=-0.167 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||...|||...+.++.
T Consensus 54 vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 45789999999999987754
No 196
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=23.37 E-value=23 Score=36.91 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=21.5
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+++|||.+|||+.+++++-
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 34444444567899999999999997753
No 197
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=23.19 E-value=2.1e+02 Score=25.34 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy13263 481 DVVKFGTTVAFQMEARHN----------LRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKD 539 (577)
Q Consensus 481 ~VI~rA~ei~~~le~~~~----------~~~~~~~L~~~~~~~~~~ld~~~l~~l~~~L~~~~~~~~~~ 539 (577)
.-|.+|..|...|....+ +..++.-+...+......-|.+.+...+..|..+++.+++-
T Consensus 57 ~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~An~~~d~~~l~ev~~ll~~lr~aW~~i 125 (131)
T 3iqc_A 57 YYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEAWREI 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888877765432 23334334444444555668889999999999999988875
No 198
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.13 E-value=24 Score=31.59 Aligned_cols=22 Identities=0% Similarity=-0.085 Sum_probs=18.1
Q ss_pred cccccCCCCCCCchhHHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDEI 321 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~valI 321 (577)
..+|+|||.+|||..++++..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999887654
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=23.04 E-value=1.2e+02 Score=32.80 Aligned_cols=20 Identities=5% Similarity=-0.099 Sum_probs=17.2
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||+..|||...+.++.
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45889999999999998864
No 200
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=22.75 E-value=22 Score=37.07 Aligned_cols=29 Identities=3% Similarity=-0.168 Sum_probs=21.3
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+++|||.+|||+.+++++-
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 34444444567899999999999987753
No 201
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=22.57 E-value=24 Score=36.79 Aligned_cols=29 Identities=7% Similarity=-0.013 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCchhHHHHHH
Q psy13263 292 AFDHKEASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 292 ~F~~~~a~~~~I~gPN~gGKsvy~k~val 320 (577)
+|........+++|||.+|||+.+++++-
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 34444444567999999999999997753
No 202
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=22.31 E-value=83 Score=35.99 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=18.4
Q ss_pred cccccccCCCCCCCchhHHHHHH
Q psy13263 298 ASSAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 298 a~~~~I~gPN~gGKsvy~k~val 320 (577)
....+++||+..|||...+.++.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34467889999999999987754
No 203
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=21.91 E-value=1.4e+02 Score=28.51 Aligned_cols=20 Identities=10% Similarity=-0.110 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++||...|||...+.++.
T Consensus 67 vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 45789999999999887765
No 204
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=21.82 E-value=30 Score=31.39 Aligned_cols=20 Identities=5% Similarity=-0.248 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.+++|||.+|||+..+.+.-
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46889999999999887654
No 205
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=21.69 E-value=2.1e+02 Score=28.14 Aligned_cols=19 Identities=0% Similarity=-0.197 Sum_probs=16.0
Q ss_pred cccCCCCCCCchhHHHHHH
Q psy13263 302 GNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 302 ~I~gPN~gGKsvy~k~val 320 (577)
+++||...|||.+.+.++.
T Consensus 42 ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 42 LFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEESCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 5789999999999987754
No 206
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=21.02 E-value=89 Score=30.10 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=16.6
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||...|||.+.+.++.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 35789999999999987765
No 207
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=20.52 E-value=1.7e+02 Score=30.23 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=15.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
..|.||...|||.+.-+++.
T Consensus 77 i~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHH
Confidence 45678999999999877654
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=20.45 E-value=1e+02 Score=33.13 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=17.0
Q ss_pred cccccCCCCCCCchhHHHHHH
Q psy13263 300 SAGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 300 ~~~I~gPN~gGKsvy~k~val 320 (577)
..+++||...|||...+.++.
T Consensus 240 ~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHH
Confidence 356889999999999887753
No 209
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=20.31 E-value=1.5e+02 Score=32.35 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhhhHhhhhHHHhhhhhhhhhhhhhhhhccccCccCCcchhhhhhhhhhccCcccccCccccccccccccccccc---cc
Q psy13263 224 VLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEA---SS 300 (577)
Q Consensus 224 vLLfrvG~FYElf~~DA~i~a~eLdl~~mkGsn~~GKStlLk~i~~~~i~i~~GrhPlLe~~l~~~~n~F~~~~a---~~ 300 (577)
+|.-.+.+.+.....+..+....-.+..+-|.|..||||+++.++. +....|.-..+...-.+-..++..-.. +.
T Consensus 270 ~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~ 347 (503)
T 2yhs_A 270 LLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR--QFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 347 (503)
T ss_dssp HHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH--HhhhcCCeEEEecCcccchhhHHHHHHHHHhc
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhccccccccceeccceeeecc-cccc--hhhhhchhhhHHhhh----cCCCce
Q psy13263 301 AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEA-QKKQ--KKYVLEVPSKYASKA----KSNHQR 373 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~valI~~imaqig~~VpA~~a~l~~d~if~~i-G~~q--StF~~Em~e~~~il~----~a~~~s 373 (577)
.+-+++...+.-....+...|. +...-+ +|.|++++ |..+ ...+.|+..+..+.. ......
T Consensus 348 ~I~vV~Q~~~~~p~~tV~e~l~-~a~~~~-----------~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~ev 415 (503)
T 2yhs_A 348 NIPVIAQHTGADSASVIFDAIQ-AAKARN-----------IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEV 415 (503)
T ss_dssp TCCEECCSTTCCHHHHHHHHHH-HHHHTT-----------CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEE
T ss_pred CceEEecccCcCHHHHHHHHHH-HHHhcC-----------CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCee
Q ss_pred EEeecccCcccccccccCCCCcchhhHHHHHHHHHHhc-CCeEEEecch
Q psy13263 374 VATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQI-GCLTVFATHY 421 (577)
Q Consensus 374 LVLlDEtg~n~v~~LGRGTst~DG~ALA~AIlE~L~~~-~~~~lfaTHy 421 (577)
|+++|- |...+.+ ..++.|... +...|+.||.
T Consensus 416 LLvLDa------------ttGq~al----~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 416 MLTIDA------------STGQNAV----SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEEEEG------------GGTHHHH----HHHHHHHHHTCCSEEEEECG
T ss_pred EEEecC------------cccHHHH----HHHHHHHhhcCCCEEEEEcC
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=20.28 E-value=1.4e+02 Score=31.38 Aligned_cols=20 Identities=5% Similarity=-0.139 Sum_probs=16.7
Q ss_pred ccccCCCCCCCchhHHHHHH
Q psy13263 301 AGNIIPKAGVDKEYDEVMDE 320 (577)
Q Consensus 301 ~~I~gPN~gGKsvy~k~val 320 (577)
.++.||...|||.+.+.++.
T Consensus 170 vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999987764
Done!