Your job contains 1 sequence.
>psy13263
MYLDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSD
SEPDDMLQDNGSEDEYVPPKAEVESESEHSSGEEELEESVEDPTPSSSEAEVTPMKNGNK
RGLSSKSGQPTKKPKLTAPSTPSTPSFPVSDTSETTPSTSGAQDWSHNHYQFLHPDHILD
ADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDA
VIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASS
AGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVP
SKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATH
YHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPE
DVVKFGTTVAFQMEARHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDL
EDLPGGVAGAGTEWWPSPSNDPCSASPPCEETMPPVA
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13263
(577 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 318 8.1e-64 4
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 325 1.9e-60 3
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 321 9.8e-60 3
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 309 4.4e-59 3
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 305 4.9e-59 3
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 301 7.4e-59 3
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 298 8.6e-58 3
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 305 1.7e-57 3
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 289 3.8e-57 4
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 290 1.0e-56 3
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 288 1.7e-56 3
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 268 3.4e-56 3
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 267 2.7e-55 3
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 267 2.6e-53 4
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 267 2.6e-53 4
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 241 1.5e-49 4
UNIPROTKB|I3LUG7 - symbol:LOC100624532 "Uncharacterized p... 319 6.1e-42 2
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 181 1.6e-37 4
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 181 1.6e-37 4
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 238 3.0e-36 4
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 194 6.8e-33 4
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 189 6.9e-33 4
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 204 2.1e-32 3
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 181 2.1e-31 4
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 194 4.1e-29 4
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 211 1.2e-27 2
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 215 1.8e-27 3
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 175 7.4e-27 3
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 204 8.4e-26 4
UNIPROTKB|Q23AD6 - symbol:TTHERM_00426230 "MutS domain II... 180 1.1e-24 4
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 187 1.8e-24 3
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 180 1.0e-16 4
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 199 1.1e-15 3
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 165 5.3e-15 5
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 154 8.2e-15 2
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 141 1.5e-14 3
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 200 1.9e-14 3
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 144 1.1e-13 2
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 195 1.4e-13 3
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 156 1.7e-13 3
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 145 1.8e-13 3
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 153 3.9e-13 3
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 151 5.1e-13 2
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 145 5.9e-13 3
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 166 1.5e-12 2
UNIPROTKB|F1RF09 - symbol:MSH3 "Uncharacterized protein" ... 174 1.9e-12 3
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 164 2.1e-12 3
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 164 2.1e-12 3
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 187 2.5e-12 4
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 165 2.5e-12 3
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 155 3.2e-12 3
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 181 3.3e-12 4
RGD|1563954 - symbol:Msh3 "mutS homolog 3 (E. coli)" spec... 183 4.1e-12 1
UNIPROTKB|F1LXQ9 - symbol:Msh3 "Protein Msh3" species:101... 183 4.3e-12 1
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 153 7.4e-12 2
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 183 8.8e-12 2
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 152 1.9e-11 2
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 154 2.1e-11 2
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 180 2.7e-11 2
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 179 2.8e-11 2
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 186 4.2e-11 1
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 136 4.8e-11 2
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 141 6.1e-11 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 148 6.1e-11 2
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 129 7.0e-11 3
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 183 8.1e-11 3
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 120 1.3e-10 3
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 120 1.3e-10 3
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 155 2.2e-10 3
UNIPROTKB|Q7SD11 - symbol:msh-3 "DNA mismatch repair prot... 95 4.2e-10 6
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 163 8.8e-10 3
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 172 1.0e-09 2
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 174 2.5e-09 4
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 170 4.7e-09 1
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 113 6.0e-09 4
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 132 1.4e-08 2
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 163 2.6e-08 1
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 173 2.9e-08 2
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 149 5.3e-08 3
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 141 6.7e-08 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 141 6.8e-08 2
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 157 1.2e-07 1
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 149 1.3e-07 3
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 156 1.6e-07 1
UNIPROTKB|Q7S0U7 - symbol:NCU07407 "Putative uncharacteri... 129 2.0e-07 3
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 149 3.0e-07 1
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 157 7.4e-07 2
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 149 7.4e-07 2
UNIPROTKB|Q6L4V0 - symbol:P0010D04.9 "Putative uncharacte... 148 9.3e-07 1
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 146 1.0e-06 3
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 146 1.1e-06 3
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 143 1.2e-06 2
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 148 1.3e-06 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 144 1.8e-06 3
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 143 4.5e-06 3
TAIR|locus:2087193 - symbol:MSH1 "AT3G24320" species:3702... 143 5.4e-06 2
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 126 5.5e-06 2
TAIR|locus:2092404 - symbol:MSH5 "AT3G20475" species:3702... 140 6.8e-06 1
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 147 7.5e-06 3
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 147 7.5e-06 3
WARNING: Descriptions of 12 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 318 (117.0 bits), Expect = 8.1e-64, Sum P(4) = 8.1e-64
Identities = 82/266 (30%), Positives = 118/266 (44%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
L +++ K G E+S PA+ + K P DD P + + +RK + +S + + E
Sbjct: 50 LQNQQPKVKDGKKEASKPAAKR-----KLPIS--DDEPASGQRKRKRIVQPESDSEPEME 102
Query: 63 ---PDDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXX--DPTPSSSEAEVTPMKN 117
+D D S+ E +A PTP S + + N
Sbjct: 103 VTKSEDDFSDCASDYEPDENEASDDSVSSGAEEVSPSENDMSVDSPTPKKSRKKSKILNN 162
Query: 118 GNKRGLSSKSGQXXXXXXXXXXXXXX-------XXXXXXXXXXETTPSTSGAQD---WSH 167
N SSK + + +TS + W H
Sbjct: 163 NNNNEPSSKKVKLESTIQLAEGATFQEKLKNLQSNAKQDASYDDIVTNTSNLDEPVVWPH 222
Query: 168 NHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFF 227
+FL PD I D + R P HPDY+ TL+VP +FL +P + QWW +KS N+DCVLFF
Sbjct: 223 QKLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFF 282
Query: 228 KVGKFYELFHMDAVIGADELACSYMK 253
KVGKFYEL+HMDA +G +EL +YM+
Sbjct: 283 KVGKFYELYHMDADVGVNELGFTYMR 308
Score = 256 (95.2 bits), Expect = 8.1e-64, Sum P(4) = 8.1e-64
Identities = 60/130 (46%), Positives = 75/130 (57%)
Query: 265 TQLCNYESQTPS--GCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIK 322
T L +Q P G FPD+S+ L+YF AFDH A+ G I P+AG+D EYD MD I
Sbjct: 721 TTLLKRITQLPESGGSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMDSIG 780
Query: 323 SIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKA-KSNHQRVATK-KKN 380
+EK ++TYL Q HFGC + Y + KK +Y L+VP +ASKA KS TK KK
Sbjct: 781 EVEKRLKTYLVEQERHFGCRITYFGSDKK--RYQLDVPESHASKANKSYTLEGQTKGKKP 838
Query: 381 VENYVTPECR 390
Y T E R
Sbjct: 839 SRRYTTAETR 848
Score = 204 (76.9 bits), Expect = 8.1e-64, Sum P(4) = 8.1e-64
Identities = 44/147 (29%), Positives = 76/147 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYI---EDKR 446
RGT T DG IA + + C T+F+THYH++ + + +M+ + ED
Sbjct: 1041 RGTATYDGTAIAASVVNFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNA 1100
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
+ +T+ FLYK G CPKS+GFN A+LAG+P+ ++K ++ ++EA L++ K
Sbjct: 1101 DPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIA-LQRKITAK 1159
Query: 507 FASLVKSGEKVDVEELQKALESVKSFE 533
+ E E++ + +K +
Sbjct: 1160 IVAATAGNEDTKKEKINALKDLLKQLK 1186
Score = 74 (31.1 bits), Expect = 2.6e-37, Sum P(4) = 2.6e-37
Identities = 31/125 (24%), Positives = 51/125 (40%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSE-----DDSPVTKRPRRKSAKRVKSAIQ 58
D S +K + ++ P GKK + PA DD P + + +RK R+ +
Sbjct: 39 DPDASKSEKENLQNQQPKVKDGKKEASKPAAKRKLPISDDEPASGQRKRK---RIVQP-E 94
Query: 59 SDSEPDDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEV---TPM 115
SDSEP+ ++ SED++ A + +PS ++ V TP
Sbjct: 95 SDSEPE--MEVTKSEDDF-SDCASDYEPDENEASDDSVSSGAEEVSPSENDMSVDSPTPK 151
Query: 116 KNGNK 120
K+ K
Sbjct: 152 KSRKK 156
Score = 46 (21.3 bits), Expect = 2.0e-34, Sum P(4) = 2.0e-34
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 17 SSTPASSKGK-----KTSKSPAKSEDDSPVTKRPRRKSAKRVKS 55
S +PA K K KT +KSE ++ ++P+ K K+ S
Sbjct: 22 SKSPAFDKKKLTPSVKTDPDASKSEKENLQNQQPKVKDGKKEAS 65
Score = 44 (20.5 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKSPAKSE 36
LD ES K + + +KGKK S+ +E
Sbjct: 813 LDVPESHASKANKSYTLEGQTKGKKPSRRYTTAE 846
Score = 38 (18.4 bits), Expect = 8.1e-64, Sum P(4) = 8.1e-64
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 228 KVGKFYELFHMDAVIGADELACS 250
K+G ++ +M A++ DE CS
Sbjct: 383 KIGPNHQPNYMLAIVEKDEGTCS 405
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 325 (119.5 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
Identities = 85/263 (32%), Positives = 119/263 (45%)
Query: 4 DSKESPEKKGDSE-SSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
D PE++ ++E S K ++ + + ++ E+ P + PRR S + K + SDSE
Sbjct: 197 DEPSEPEEEEETEVHEAYLSDKSEEDNYNESE-EEAQPSVQGPRRSSRQVKKRRVISDSE 255
Query: 63 PDDMLQDNGSEDEYVPPK----AXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKNG 118
D GS+ E+ P + P A V + G
Sbjct: 256 SDI----GGSDVEFKPDTKQEGSSDDASSGVGDSDSEDLGTFGKGAPKRKRAMVA--QGG 309
Query: 119 NKR-GLSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXET-TPSTSGAQD------WSHNHY 170
+R L ++G E+ T + G D W H
Sbjct: 310 LRRKSLKKETGSAKRATPILSETKSTLSAFSAPQNSESQTHVSGGGNDSSGPTVWYHETL 369
Query: 171 QFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVG 230
++L P+ D RR P HP++NP TLYVP EFL TP M +WW +KSQNFD V+F+KVG
Sbjct: 370 EWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKVG 429
Query: 231 KFYELFHMDAVIGADELACSYMK 253
KFYEL+HMDAVIG EL +MK
Sbjct: 430 KFYELYHMDAVIGVSELGLIFMK 452
Score = 217 (81.4 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
Identities = 47/117 (40%), Positives = 69/117 (58%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1215 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACMVENECE 1274
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLF 503
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E + QLF
Sbjct: 1275 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFERMNQSLQLF 1331
Score = 203 (76.5 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
Identities = 41/127 (32%), Positives = 72/127 (56%)
Query: 261 STLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDE 320
S L Q+ +S++P G FPD++ L+ ++ AFDH++A G I PKAG D +YD+ + +
Sbjct: 881 SKTLKQVVTLQSKSPKGRFPDLTAELQRWDTAFDHEKARKTGLITPKAGFDSDYDQALAD 940
Query: 321 IKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKK 379
I+ E+ + YL Q + GC +++Y + +Y LE+P +A++ + + KK
Sbjct: 941 IRENEQSLLEYLDKQRSRLGCKSIVYWGIGRN--RYQLEIPENFATRNLPEEYELKSTKK 998
Query: 380 NVENYVT 386
+ Y T
Sbjct: 999 GCKRYWT 1005
Score = 41 (19.5 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 1 MYLDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTK-RPRRKSAKRVKSAIQS 59
+Y +SP +++ AS +G S + A D+ ++ P +SA V ++
Sbjct: 7 LYSFFPKSPALGDTKKAAAEASRQGAAASGASASRGGDAAWSEAEPGSRSAA-VSASSPE 65
Query: 60 DSEPDDMLQDNGSEDEYVPPKA 81
+ + L+ S + VPP +
Sbjct: 66 AKDLNGGLRRASSSAQAVPPSS 87
Score = 39 (18.8 bits), Expect = 3.1e-29, Sum P(3) = 3.1e-29
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKS---PAKSEDDSPVT 42
L K ++ G ++ +TP S+ K T + P SE + V+
Sbjct: 310 LRRKSLKKETGSAKRATPILSETKSTLSAFSAPQNSESQTHVS 352
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 321 (118.1 bits), Expect = 9.8e-60, Sum P(3) = 9.8e-60
Identities = 84/265 (31%), Positives = 116/265 (43%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDS-----PVTKRPRRKSAKRVKSAIQ 58
D PE++ + E + KS +++D+S P + PRR S + K +
Sbjct: 195 DEPSEPEEEEEEEEEETQVHGAYLSDKSEEENQDESEEETQPNAQGPRRSSRQVKKRRVI 254
Query: 59 SDSEPDDMLQDNGSEDEYVPP-KAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKN 117
SDSE D GS+ E+ P K + + + T +
Sbjct: 255 SDSESDI----GGSDVEFKPDSKQEGSSDEVSSGVGDSDSEGLGSFGKGAPKRKRTVAAH 310
Query: 118 GN--KRGLSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXET-TPSTSGAQD------WSHN 168
G ++ L ++G E+ T G D W H
Sbjct: 311 GGLKRKSLKKETGSAKQATRILSETKSTLSAFCAPQNSESQTHVCGGGNDSSGPTIWYHE 370
Query: 169 HYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFK 228
++L P+ D +RR P HPDYN TLYVP +FL TP M +WW KSQNFD V+F+K
Sbjct: 371 TLEWLKPEKRRDENRRRPDHPDYNSSTLYVPEDFLNSCTPGMRRWWQFKSQNFDLVIFYK 430
Query: 229 VGKFYELFHMDAVIGADELACSYMK 253
VGKFYEL+HMDAVIG EL +MK
Sbjct: 431 VGKFYELYHMDAVIGVSELGLIFMK 455
Score = 219 (82.2 bits), Expect = 9.8e-60, Sum P(3) = 9.8e-60
Identities = 52/143 (36%), Positives = 78/143 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1218 RGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGHMACMVENECE 1277
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E + QLF +
Sbjct: 1278 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFERMNQALQLF--R 1335
Query: 507 FASLVKSGEKVDVEELQKALESV 529
L V+ E + + L V
Sbjct: 1336 EVCLASERPTVNSEAIHRLLALV 1358
Score = 199 (75.1 bits), Expect = 9.8e-60, Sum P(3) = 9.8e-60
Identities = 40/128 (31%), Positives = 71/128 (55%)
Query: 260 ESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMD 319
+S L Q+ ++++P G FPD++ L ++ AFDH++A G I PKAG D +YD+ +
Sbjct: 883 KSKTLKQVVTLQTKSPKGRFPDLTAELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALA 942
Query: 320 EIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378
+I+ E+ + YL Q + GC ++Y + +Y LE+P +A++ + + K
Sbjct: 943 DIRENEQSLLEYLDKQRSRIGCRNIVYWGIGRN--RYQLEIPENFATRNLPEEYELKSTK 1000
Query: 379 KNVENYVT 386
K + Y T
Sbjct: 1001 KGCKRYWT 1008
Score = 57 (25.1 bits), Expect = 6.7e-31, Sum P(3) = 6.7e-31
Identities = 24/75 (32%), Positives = 33/75 (44%)
Query: 2 YLDSKESPEKKGDSESSTPASSKGKKTSKSPAK-------SEDD---SPVTKRPRRK--- 48
YL K E + +SE T +++G + S K SE D S V +P K
Sbjct: 217 YLSDKSEEENQDESEEETQPNAQGPRRSSRQVKKRRVISDSESDIGGSDVEFKPDSKQEG 276
Query: 49 SAKRVKSAI-QSDSE 62
S+ V S + SDSE
Sbjct: 277 SSDEVSSGVGDSDSE 291
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 309 (113.8 bits), Expect = 4.4e-59, Sum P(3) = 4.4e-59
Identities = 84/263 (31%), Positives = 114/263 (43%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDD-SPVTKRPRRKSAKRVKSAIQSDSE 62
D PE++ ++E +S K ++ +SE++ P + RR S + K + SDSE
Sbjct: 196 DEPSEPEEEEETEVGATYTSD-KSEEENDIESEEEVRPKVQGSRRSSRQIKKRRVISDSE 254
Query: 63 PDDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKNGN--- 119
D GS+ E+ P D TP + M GN
Sbjct: 255 SDV----GGSDVEFKPDTKEEASSDEISSGVGDSDSEGLD-TPVKVAPKRKRMVTGNGSL 309
Query: 120 KRGLSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXETTPST--SGAQD-------WSHNHY 170
KR S K + P SG D W H
Sbjct: 310 KRKSSRKEMPSATKRATGISSETKNTLSAFSVPQNSEPQAHISGGCDDSNRPTVWYHETL 369
Query: 171 QFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVG 230
++L + D RR P HPD++ TLYVP +FL TP M +WW IKSQNFD V+F+KVG
Sbjct: 370 EWLKEEKRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVG 429
Query: 231 KFYELFHMDAVIGADELACSYMK 253
KFYE++HMDA+IG EL +MK
Sbjct: 430 KFYEMYHMDALIGVSELGLVFMK 452
Score = 221 (82.9 bits), Expect = 4.4e-59, Sum P(3) = 4.4e-59
Identities = 51/144 (35%), Positives = 78/144 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1217 RGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1276
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E +LF +
Sbjct: 1277 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLRLF--R 1334
Query: 507 FASLVKSGEKVDVEELQKALESVK 530
L VD + + K L ++
Sbjct: 1335 EVCLASERSTVDADAVHKLLTLIE 1358
Score = 205 (77.2 bits), Expect = 4.4e-59, Sum P(3) = 4.4e-59
Identities = 40/128 (31%), Positives = 72/128 (56%)
Query: 260 ESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMD 319
+S +L Q+ ++++P G FPD++ L ++ AFDH++A G I PKAG D +YD+ +
Sbjct: 882 KSKILKQVLTLQTKSPEGRFPDLTSELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALA 941
Query: 320 EIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378
+I+ E+ + YL Q + GC T++Y + +Y LE+P + ++ + + K
Sbjct: 942 DIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRN--RYQLEIPENFITRNLPEEYELKSTK 999
Query: 379 KNVENYVT 386
K + Y T
Sbjct: 1000 KGCKRYWT 1007
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 305 (112.4 bits), Expect = 4.9e-59, Sum P(3) = 4.9e-59
Identities = 78/261 (29%), Positives = 112/261 (42%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
D PE++ + E SS+ + E+ P + RR S + K + SDSE
Sbjct: 115 DEPSEPEEEEEMEVGATHSSEKSEEDNEIESEEEVRPKVQGSRRSSRQIKKRRVISDSES 174
Query: 64 DDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXD-PTPSSSEAEVTPMKNGNKRG 122
D GS+ E+ P D P +S+ + NG+ +
Sbjct: 175 DI----GGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVASKRKKMVTGNGSLKR 230
Query: 123 LSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXETTPSTS----GAQD------WSHNHYQF 172
SS+ + + S + G D W H ++
Sbjct: 231 KSSRKEMPPATKRSTGISSETKSALNAYSAPQNSESQAHIGGGCDDSSRPTIWYHETLEW 290
Query: 173 LHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKF 232
L + D RR P HPD++ TLYVP +FL TP M +WW IKSQNFD ++F+KVGKF
Sbjct: 291 LKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLIIFYKVGKF 350
Query: 233 YELFHMDAVIGADELACSYMK 253
YEL+HMDA+ G +EL +MK
Sbjct: 351 YELYHMDALTGVNELGLVFMK 371
Score = 227 (85.0 bits), Expect = 4.9e-59, Sum P(3) = 4.9e-59
Identities = 53/144 (36%), Positives = 78/144 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1137 RGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1196
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E +LF +
Sbjct: 1197 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLRLF--R 1254
Query: 507 FASLVKSGEKVDVEELQKALESVK 530
L VD E + K L +K
Sbjct: 1255 EVCLASERSTVDAEAVPKLLTLIK 1278
Score = 202 (76.2 bits), Expect = 4.9e-59, Sum P(3) = 4.9e-59
Identities = 40/128 (31%), Positives = 71/128 (55%)
Query: 260 ESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMD 319
+S +L Q+ +++ P G FPD++ L ++ AFDH++A G I PKAG D +YD+ +
Sbjct: 801 KSKILKQVITLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALA 860
Query: 320 EIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378
+I+ E+ + YL Q + GC T++Y + +Y LE+P + ++ + + K
Sbjct: 861 DIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRN--RYQLEIPENFITRNLPEEYELKSTK 918
Query: 379 KNVENYVT 386
K + Y T
Sbjct: 919 KGCKRYWT 926
Score = 40 (19.1 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVK 54
+ ES D E A +G S + DS P + ++KR K
Sbjct: 169 ISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVASKRKK 220
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 301 (111.0 bits), Expect = 7.4e-59, Sum P(3) = 7.4e-59
Identities = 82/262 (31%), Positives = 116/262 (44%)
Query: 4 DSKESPEKKGDSE-SSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
D PE++ + E +T + K ++ ++ ++ E+ P T+ RR S + K + SDSE
Sbjct: 197 DEPSEPEEEEEMEVGTTYVTDKSEEDNEIESE-EEVQPKTQGSRRSSRQIKKRRVISDSE 255
Query: 63 PDDMLQDNGSEDEYVPP-KAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKNGN-K 120
D GS+ E+ P K P + + + NG+ K
Sbjct: 256 SDI----GGSDVEFKPDTKEEGSSDEISSGVGDSESEGLNSPVKVARKRKRMVTGNGSLK 311
Query: 121 RGLSSKSGQXXXXXXXXXXXXXXXXXXXXXX--XXETTPSTSGAQD-------WSHNHYQ 171
R S K E+ SG D W H +
Sbjct: 312 RKSSRKETPSATKQATSISSETKNTLRAFSAPQNSESQAHVSGGGDDSSRPTVWYHETLE 371
Query: 172 FLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGK 231
+L + D RR P HPD++ TLYVP +FL TP M +WW IKSQNFD V+ +KVGK
Sbjct: 372 WLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGK 431
Query: 232 FYELFHMDAVIGADELACSYMK 253
FYEL+HMDA+IG EL +MK
Sbjct: 432 FYELYHMDALIGVSELGLVFMK 453
Score = 231 (86.4 bits), Expect = 7.4e-59, Sum P(3) = 7.4e-59
Identities = 53/144 (36%), Positives = 79/144 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1217 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1276
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E + +LF +
Sbjct: 1277 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLF--R 1334
Query: 507 FASLVKSGEKVDVEELQKALESVK 530
L VD E + K L +K
Sbjct: 1335 EVCLASERSTVDAEAVHKLLTLIK 1358
Score = 202 (76.2 bits), Expect = 7.4e-59, Sum P(3) = 7.4e-59
Identities = 42/136 (30%), Positives = 74/136 (54%)
Query: 252 MKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVD 311
M+E +S +L Q+ + +++ P G FPD++ L ++ AFDH++A G I PKAG D
Sbjct: 875 MEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFD 934
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSN 370
+YD+ + +I+ E+ + YL Q GC T++Y + +Y LE+P + ++
Sbjct: 935 SDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN--RYQLEIPENFTTRNLPE 992
Query: 371 HQRVATKKKNVENYVT 386
+ + KK + Y T
Sbjct: 993 EYELKSTKKGCKRYWT 1008
Score = 37 (18.1 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 1 MYLDSKESPEKKGDSESSTPASSKGKKTSKSPAKS 35
+Y +SP +++S AS +G + + +P S
Sbjct: 7 LYSFFPKSPALSDANKASARASREGGRAAAAPGAS 41
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 298 (110.0 bits), Expect = 8.6e-58, Sum P(3) = 8.6e-58
Identities = 81/250 (32%), Positives = 108/250 (43%)
Query: 16 ESSTPASSKGKKTSKSPAKSEDD-SPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSED 74
E S P + K ++ +SE++ P + RR S K + SDSE D GS+
Sbjct: 184 EPSEPEEEE-KSEEENEMESEEEVQPKVQGSRRSSRHIKKRRVISDSESDV----GGSDV 238
Query: 75 EYVPPKAXXXXXXXXXXXXXXXXXXXXD-PTPSSSEAEVTPMKNGN-KRGLSSKSGQXXX 132
E+ P D P + + + NG+ KR S K
Sbjct: 239 EFKPDTKEEGSSDEMSSGVGDSDSEGLDSPVKIAPKRKRMVTGNGSLKRKSSRKEMPSAT 298
Query: 133 XXXXXXXXXXXXXXXXXXXXXETTPST--SGAQD-------WSHNHYQFLHPDHILDADR 183
+ P SG D W H ++L + D R
Sbjct: 299 KRAIGISSETRSTLSAFSAPQNSEPQAHISGGCDDSNRPTVWYHETLEWLKEERRRDVHR 358
Query: 184 RSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIG 243
R P HPD++ TLYVP +FL TP M +WW IKSQNFD V+F+KVGKFYEL+HMDA+IG
Sbjct: 359 RRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIG 418
Query: 244 ADELACSYMK 253
EL +MK
Sbjct: 419 VSELGLVFMK 428
Score = 223 (83.6 bits), Expect = 8.6e-58, Sum P(3) = 8.6e-58
Identities = 52/140 (37%), Positives = 76/140 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1193 RGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1252
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E +LF +
Sbjct: 1253 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLRLF--R 1310
Query: 507 FASLVKSGEKVDVEELQKAL 526
L VD E + K L
Sbjct: 1311 EVCLASERSTVDAEAVHKLL 1330
Score = 203 (76.5 bits), Expect = 8.6e-58, Sum P(3) = 8.6e-58
Identities = 40/128 (31%), Positives = 71/128 (55%)
Query: 260 ESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMD 319
+S +L Q+ +++ P G FPD++ L ++ AFDH++A G I PKAG D +YD+ +
Sbjct: 858 KSKILKQVLTLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALA 917
Query: 320 EIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378
+I+ E+ + YL Q + GC T++Y + +Y LE+P + ++ + + K
Sbjct: 918 DIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRN--RYQLEIPENFTTRNLPEEYELKSTK 975
Query: 379 KNVENYVT 386
K + Y T
Sbjct: 976 KGCKRYWT 983
Score = 51 (23.0 bits), Expect = 3.5e-31, Sum P(3) = 3.5e-31
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKS-PAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
++ ++P + SE S PA++ G S A + P + P +++ S+ D
Sbjct: 19 NANKAPARVS-SEGSAPAAAAGASPSPGGDAAWSETGPGSGSPAGSASRAEASSSSCDFS 77
Query: 63 PDDML 67
P D++
Sbjct: 78 PGDLV 82
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 305 (112.4 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 78/261 (29%), Positives = 112/261 (42%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
D PE++ + E SS+ + E+ P + RR S + K + SDSE
Sbjct: 125 DEPSEPEEEEEMEVGATHSSEKSEEDNEIESEEEVRPKVQGSRRSSRQIKKRRVISDSES 184
Query: 64 DDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXD-PTPSSSEAEVTPMKNGNKRG 122
D GS+ E+ P D P +S+ + NG+ +
Sbjct: 185 DI----GGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVASKRKKMVTGNGSLKR 240
Query: 123 LSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXETTPSTS----GAQD------WSHNHYQF 172
SS+ + + S + G D W H ++
Sbjct: 241 KSSRKEMPPATKRSTGISSETKSALNAYSAPQNSESQAHIGGGCDDSSRPTIWYHETLEW 300
Query: 173 LHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKF 232
L + D RR P HPD++ TLYVP +FL TP M +WW IKSQNFD ++F+KVGKF
Sbjct: 301 LKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLIIFYKVGKF 360
Query: 233 YELFHMDAVIGADELACSYMK 253
YEL+HMDA+ G +EL +MK
Sbjct: 361 YELYHMDALTGVNELGLVFMK 381
Score = 212 (79.7 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1146 RGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1205
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLF 503
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E +LF
Sbjct: 1206 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLRLF 1262
Score = 202 (76.2 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 40/128 (31%), Positives = 71/128 (55%)
Query: 260 ESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMD 319
+S +L Q+ +++ P G FPD++ L ++ AFDH++A G I PKAG D +YD+ +
Sbjct: 811 KSKILKQVITLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALA 870
Query: 320 EIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378
+I+ E+ + YL Q + GC T++Y + +Y LE+P + ++ + + K
Sbjct: 871 DIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRN--RYQLEIPENFITRNLPEEYELKSTK 928
Query: 379 KNVENYVT 386
K + Y T
Sbjct: 929 KGCKRYWT 936
Score = 40 (19.1 bits), Expect = 8.7e-29, Sum P(3) = 8.7e-29
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVK 54
+ ES D E A +G S + DS P + ++KR K
Sbjct: 179 ISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVASKRKK 230
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 289 (106.8 bits), Expect = 3.8e-57, Sum P(4) = 3.8e-57
Identities = 79/250 (31%), Positives = 110/250 (44%)
Query: 15 SESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSED 74
S +T + K ++ ++ ++ E+ P T+ RR S + K + SDSE D GS+
Sbjct: 79 SVGTTYVTDKSEEDNEIESE-EEVQPKTQGSRRSSRQIKKRRVISDSESDI----GGSDV 133
Query: 75 EYVPP-KAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKNGN-KRGLSSKSGQXXX 132
E+ P K P + + + NG+ KR S K
Sbjct: 134 EFKPDTKEEGSSDEISSGVGDSESEGLNSPVKVARKRKRMVTGNGSLKRKSSRKETPSAT 193
Query: 133 XXXXXXXXXXXXXXXXXXX--XXETTPSTSGAQD-------WSHNHYQFLHPDHILDADR 183
E+ SG D W H ++L + D R
Sbjct: 194 KQATSISSETKNTLRAFSAPQNSESQAHVSGGGDDSSRPTVWYHETLEWLKEEKRRDEHR 253
Query: 184 RSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIG 243
R P HPD++ TLYVP +FL TP M +WW IKSQNFD V+ +KVGKFYEL+HMDA+IG
Sbjct: 254 RRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIG 313
Query: 244 ADELACSYMK 253
EL +MK
Sbjct: 314 VSELGLVFMK 323
Score = 231 (86.4 bits), Expect = 3.8e-57, Sum P(4) = 3.8e-57
Identities = 53/144 (36%), Positives = 79/144 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 1087 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 1146
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E + +LF +
Sbjct: 1147 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLF--R 1204
Query: 507 FASLVKSGEKVDVEELQKALESVK 530
L VD E + K L +K
Sbjct: 1205 EVCLASERSTVDAEAVHKLLTLIK 1228
Score = 202 (76.2 bits), Expect = 3.8e-57, Sum P(4) = 3.8e-57
Identities = 42/136 (30%), Positives = 74/136 (54%)
Query: 252 MKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVD 311
M+E +S +L Q+ + +++ P G FPD++ L ++ AFDH++A G I PKAG D
Sbjct: 745 MEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFD 804
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSN 370
+YD+ + +I+ E+ + YL Q GC T++Y + +Y LE+P + ++
Sbjct: 805 SDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN--RYQLEIPENFTTRNLPE 862
Query: 371 HQRVATKKKNVENYVT 386
+ + KK + Y T
Sbjct: 863 EYELKSTKKGCKRYWT 878
Score = 37 (18.1 bits), Expect = 3.8e-57, Sum P(4) = 3.8e-57
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 1 MYLDSKESPEKKGDSESSTPASSKGKKTSKSPAKS 35
+Y +SP +++S AS +G + + +P S
Sbjct: 7 LYSFFPKSPALSDANKASARASREGGRAAAAPGAS 41
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 290 (107.1 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 86/269 (31%), Positives = 114/269 (42%)
Query: 5 SKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKR-PRRKSAKRVKSAIQSDSEP 63
S+ S ++ + E S S + SE+D KR P R SA + K DS+
Sbjct: 193 SEPSDTEEAEEEEMEQMSGSASGDSDD-SNSEEDVKGNKRVPNRGSAIKAKRRRVLDSDS 251
Query: 64 DDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEV-TPMKNGNKRG 122
D +D GS+ E+ P S E+ + P K KRG
Sbjct: 252 D---RD-GSDVEFKPDVKEASSEEASSGVDENEATDVETDEESIEESPIKVPSKR--KRG 305
Query: 123 LSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXETT----PS------------TSGAQDWS 166
SK + + T P T+G W
Sbjct: 306 NVSKPSKRSSLENEHSEAPKRAAPVSLEAKSKLTLFAAPENFESQANACSGGTNGFAAWE 365
Query: 167 HNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLF 226
H ++L DA RR HPDY+P TLYVP ++L K TP M +WW +KSQNFD V+
Sbjct: 366 HEKLEWLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVIC 425
Query: 227 FKVGKFYELFHMDAVIGADELACSYMKES 255
+KVGKFYEL+HMDAV G +EL +MK S
Sbjct: 426 YKVGKFYELYHMDAVTGVNELGLIFMKGS 454
Score = 213 (80.0 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 51/138 (36%), Positives = 73/138 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA + + + I C T+F+THYHS+ V +M+ +E++
Sbjct: 1214 RGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESE 1273
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA IPE++++ G A + E + L I +
Sbjct: 1274 DPSQETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKGHRKAKEFEKK--TMSLRIFR 1331
Query: 507 FASLVKSGEKVDVEELQK 524
F V G D + K
Sbjct: 1332 FLCRVVDGVTHDANAVGK 1349
Score = 212 (79.7 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 47/138 (34%), Positives = 76/138 (55%)
Query: 252 MKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVD 311
M+E +S +L QL +++ P G FPD+S LK ++ AFDH +A G I PKAG D
Sbjct: 872 MEEVASDFKSQVLKQLVTRKAKHPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFD 931
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSN 370
+YD+ + +IK++E++ +TYL Q G +V+Y K +Y +E+P S+
Sbjct: 932 PDYDKALQDIKTVEEDFRTYLDKQRKLLGLKSVLYWGTGKN--RYQMEIPETATSRNLPE 989
Query: 371 HQRVATKKKNVENYVTPE 388
+ + +K + Y T E
Sbjct: 990 EYELKSTRKGYKRYWTKE 1007
Score = 41 (19.5 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 29 SKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSED 74
++ P + P R +S+ R ++ +++ S P + ++NG D
Sbjct: 14 AQQPRAAATPPPAGGENRCRSS-REQNGLEAASRPAERSKENGKAD 58
Score = 40 (19.1 bits), Expect = 9.1e-39, Sum P(3) = 9.1e-39
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 243 GADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279
G E +C + G+STL+ Q GC+
Sbjct: 1120 GGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCY 1156
Score = 39 (18.8 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 358 EVPSKYASKAKSNHQRVATKKKNVEN 383
E P K SK K + +K+ ++EN
Sbjct: 293 ESPIKVPSKRKRGNVSKPSKRSSLEN 318
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 288 (106.4 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 85/264 (32%), Positives = 112/264 (42%)
Query: 10 EKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKR-PRRKSAKRVKSAIQSDSEPDDMLQ 68
E+ + E S+ G + SE+D KR P R SA + K DS+ D +
Sbjct: 184 EEAEEEEMEMSGSASG---DSDDSNSEEDVKGNKRVPNRGSAIKAKRRRVLDSDSD---R 237
Query: 69 DNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEV-TPMKNGNKRGLSSKS 127
D GS+ E+ P S E+ + P K KRG SK
Sbjct: 238 D-GSDVEFKPDVKEASSEEASSGVDENEATDVETDEESIEESPIKVPSKR--KRGNVSKP 294
Query: 128 GQXXXXXXXXXXXXXXXXXXXXXXXXETT----PS------------TSGAQDWSHNHYQ 171
+ + T P T+G W H +
Sbjct: 295 SKRSSLENEHSEAPKRAAPVSLEAKSKLTLFAAPENFESQANACSGGTNGFAAWEHEKLE 354
Query: 172 FLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGK 231
+L DA RR HPDY+P TLYVP ++L K TP M +WW +KSQNFD V+ +KVGK
Sbjct: 355 WLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYKVGK 414
Query: 232 FYELFHMDAVIGADELACSYMKES 255
FYEL+HMDAV G +EL +MK S
Sbjct: 415 FYELYHMDAVTGVNELGLIFMKGS 438
Score = 213 (80.0 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 51/138 (36%), Positives = 73/138 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA + + + I C T+F+THYHS+ V +M+ +E++
Sbjct: 1198 RGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESE 1257
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA IPE++++ G A + E + L I +
Sbjct: 1258 DPSQETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKGHRKAKEFEKK--TMSLRIFR 1315
Query: 507 FASLVKSGEKVDVEELQK 524
F V G D + K
Sbjct: 1316 FLCRVVDGVTHDANAVGK 1333
Score = 212 (79.7 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 47/138 (34%), Positives = 76/138 (55%)
Query: 252 MKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVD 311
M+E +S +L QL +++ P G FPD+S LK ++ AFDH +A G I PKAG D
Sbjct: 856 MEEVASDFKSQVLKQLVTRKAKHPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFD 915
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSN 370
+YD+ + +IK++E++ +TYL Q G +V+Y K +Y +E+P S+
Sbjct: 916 PDYDKALQDIKTVEEDFRTYLDKQRKLLGLKSVLYWGTGKN--RYQMEIPETATSRNLPE 973
Query: 371 HQRVATKKKNVENYVTPE 388
+ + +K + Y T E
Sbjct: 974 EYELKSTRKGYKRYWTKE 991
Score = 41 (19.5 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 29 SKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSED 74
++ P + P R +S+ R ++ +++ S P + ++NG D
Sbjct: 14 AQQPRAAATPPPAGGENRCRSS-REQNGLEAASRPAERSKENGKAD 58
Score = 40 (19.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 243 GADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279
G E +C + G+STL+ Q GC+
Sbjct: 1104 GGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCY 1140
Score = 39 (18.8 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 358 EVPSKYASKAKSNHQRVATKKKNVEN 383
E P K SK K + +K+ ++EN
Sbjct: 277 ESPIKVPSKRKRGNVSKPSKRSSLEN 302
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 268 (99.4 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 75/265 (28%), Positives = 118/265 (44%)
Query: 4 DSKESPEKKGDSESSTPASSK-GKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
D +E E+ + E ST + ++ ++ K K P + + +KR + + SDS+
Sbjct: 196 DEEEEDEEDIEIEKSTVSDAEMSEEEVKEKTKPSRRPPRAAAEKSQKSKRRRIVVASDSD 255
Query: 63 PDDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAE--VTPMKNGN- 119
D+G +E+ P KA + + +E + V P+K
Sbjct: 256 ------DSG--EEFDPNKAGGSSDEDEEEEEGVNSGAEEEESEPETEPDSPVKPIKRKRP 307
Query: 120 -KRGLSSKSGQXX------XXXXXXXXXXXXXXXXXXXXXXETTPSTSGAQD----WSHN 168
++ SKS ++ S +G + W H
Sbjct: 308 TEKPTKSKSKPETPKRAPAALPSVSTDAKSRLSAFSAPDNFDSQNSANGTEGGSTVWDHE 367
Query: 169 HYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFK 228
++L DA R+ +Y+P TLYVP +FL + TP M +WW +KS+ FD VLF+K
Sbjct: 368 KLEWLQDGKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMFDTVLFYK 427
Query: 229 VGKFYELFHMDAVIGADELACSYMK 253
VGKFYEL+HMDAVIG +EL ++MK
Sbjct: 428 VGKFYELYHMDAVIGVNELNLTFMK 452
Score = 230 (86.0 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ ++P V +M+ +E++
Sbjct: 1226 RGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVEDHVQDPAVRLGHMACMVENECE 1285
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA IPEDV++ G A E R + K
Sbjct: 1286 DPSQETITFLYKFIRGACPKSYGFNAARLANIPEDVIQSGHKKARDFE-RSTVSLRIFKK 1344
Query: 507 FASLVKSGEKVDVEELQKALESVKS 531
S +S + + E+L ++++++
Sbjct: 1345 LCSFAES-PRAEREQLTTLIQTLRN 1368
Score = 215 (80.7 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 49/139 (35%), Positives = 76/139 (54%)
Query: 250 SYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAG 309
S M+ G +S LL Q+ +++ G FPD+S LK ++ AFDH++A + G I PKAG
Sbjct: 874 SIMEPVGEGLKSKLLRQVVLLKTENEDGLFPDLSPELKRWDTAFDHQKARTTGVITPKAG 933
Query: 310 VDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKS 369
D EYD+ ++ IK E+++Q YL Q GC + S + +Y LEVP + ++
Sbjct: 934 FDPEYDQALNGIKECERDLQDYLDRQKKRLGCKNL-SYWGTGRNRYQLEVPESVSERSLP 992
Query: 370 NHQRVATKKKNVENYVTPE 388
V + KK + Y T +
Sbjct: 993 EEYEVRSTKKGWKRYSTKD 1011
Score = 43 (20.2 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 17 SSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQ 68
S +P + K+S SPA E D+P K +V S ++ ++P Q
Sbjct: 12 SKSPPLAVKAKSSPSPA--EGDAPGRSNTSPKEEAKVNSK-KTPAKPPSKTQ 60
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 267 (99.0 bits), Expect = 2.7e-55, Sum P(3) = 2.7e-55
Identities = 48/89 (53%), Positives = 60/89 (67%)
Query: 165 WSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCV 224
W H ++L + D RR P HPD++ TLYVP +FL TP M +WW IKSQNFD V
Sbjct: 63 WYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLV 122
Query: 225 LFFKVGKFYELFHMDAVIGADELACSYMK 253
+ +KVGKFYEL+HMDA+IG EL +MK
Sbjct: 123 ICYKVGKFYELYHMDALIGVSELGLVFMK 151
Score = 231 (86.4 bits), Expect = 2.7e-55, Sum P(3) = 2.7e-55
Identities = 53/144 (36%), Positives = 79/144 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMS-YIEDKRN 447
RGT T DG IA +++ + I C T+F+THYHS+ + V +M+ +E++
Sbjct: 915 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 974
Query: 448 D-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D +TI FLYK + G CPKS+GFN A LA +PE+V++ G A + E + +LF +
Sbjct: 975 DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLF--R 1032
Query: 507 FASLVKSGEKVDVEELQKALESVK 530
L VD E + K L +K
Sbjct: 1033 EVCLASERSTVDAEAVHKLLTLIK 1056
Score = 202 (76.2 bits), Expect = 2.7e-55, Sum P(3) = 2.7e-55
Identities = 42/136 (30%), Positives = 74/136 (54%)
Query: 252 MKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVD 311
M+E +S +L Q+ + +++ P G FPD++ L ++ AFDH++A G I PKAG D
Sbjct: 573 MEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFD 632
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSN 370
+YD+ + +I+ E+ + YL Q GC T++Y + +Y LE+P + ++
Sbjct: 633 SDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN--RYQLEIPENFTTRNLPE 690
Query: 371 HQRVATKKKNVENYVT 386
+ + KK + Y T
Sbjct: 691 EYELKSTKKGCKRYWT 706
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 267 (99.0 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 49/94 (52%), Positives = 65/94 (69%)
Query: 162 AQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNF 221
A+ + H + FL PD I D +R P+Y+PKTL+VPP+F +KQTP QWWT+KSQ+F
Sbjct: 206 AERFDHESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPPDFHQKQTPGHRQWWTMKSQHF 265
Query: 222 DCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255
D +L FKVGKFYE +HMDAV L ++M+ S
Sbjct: 266 DTILLFKVGKFYETYHMDAVEVVRALNIAFMRGS 299
Score = 226 (84.6 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 56/147 (38%), Positives = 80/147 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA L+K + C T F+THYHS+ PNV +M + DK N+
Sbjct: 1045 RGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENN 1104
Query: 449 G---IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIH 505
++ + FLY+L GICPKS+GF A+LAGI VV+ A+ +E+ L I
Sbjct: 1105 EDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVVRN----AY-LESNKFASNLIID 1159
Query: 506 -KFASLVKSG--EKVDVEELQKALESV 529
K LV+ + DV EL++ +E++
Sbjct: 1160 PKIRHLVECARDDNFDVGELKRMIEAI 1186
Score = 157 (60.3 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 41/145 (28%), Positives = 73/145 (50%)
Query: 245 DELACSYMKESGCTGEST-LLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGN 303
++L Y+K GE LL +L E + ++ E + +FE FD A G
Sbjct: 708 NKLRKEYIKVQK-EGEGCELLDELLGNEQE-----MEEVDENIYFFEKMFDRSTAMKDGK 761
Query: 304 IIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY 363
I+P AG D+EYDE ++ +K E+ Y + + C++ + ++ K KY+LE+P
Sbjct: 762 IVPNAGCDEEYDEALNRVKEALNELNDYKDSVAKKYSCSIKFVDSGKV--KYLLEMPEN- 818
Query: 364 ASKAKSNHQRVATKKKNVENYVTPE 388
+K S+ + + +++K Y TP+
Sbjct: 819 -TKVSSSFE-LKSRRKGFIRYSTPD 841
Score = 75 (31.5 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 5 SKESPEK-KGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
S E P+ K D+ + S K K +S +K+ SPV K PR S KR K + S SE
Sbjct: 29 SVEEPKSLKNDTPKISNDSEK-KVLKRSNSKTVS-SPV-KTPRNAS-KRPKVVVCSSSEG 84
Query: 64 DDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKNGNKR 121
+D D+G ED + +A +P S+ + TP + G K+
Sbjct: 85 ED---DDGDED-FEMKEAEEHESSDESEADENASDCEVVESPESTP-QSTPKRGGKKK 137
Score = 48 (22.0 bits), Expect = 1.6e-50, Sum P(4) = 1.6e-50
Identities = 14/75 (18%), Positives = 32/75 (42%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
+ KE+ E + ES ++ + +SP +S P+R K++ + +++ P
Sbjct: 94 EMKEAEEHESSDESEADENASDCEVVESP-----ESTPQSTPKRGGKKKISKPLLAENTP 148
Query: 64 DDMLQDNGSEDEYVP 78
+ G + +P
Sbjct: 149 KSVKMA-GKSKKVIP 162
Score = 40 (19.1 bits), Expect = 1.1e-49, Sum P(4) = 1.1e-49
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 16 ESSTPASSKGKKTSKSPAKSEDDSP-VTKRPRRKSAKRVKS 55
+S P +K+ + P ++D+P ++ +K KR S
Sbjct: 17 KSEKPEEEVKEKSVEEPKSLKNDTPKISNDSEKKVLKRSNS 57
Score = 39 (18.8 bits), Expect = 3.4e-29, Sum P(4) = 3.4e-29
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 171 QFLHPDHILDADRRSPKHPD 190
+ L H + RS KHPD
Sbjct: 659 RLLQKIHTIGLKYRSEKHPD 678
Score = 37 (18.1 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 296 KEASSAGNIIPKAGVDKEYDEVMD 319
K+ G + AGV + D++MD
Sbjct: 158 KKVIPDGEAVSMAGVLDKMDKIMD 181
Score = 37 (18.1 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 242 IGADELACSYMKESGCTGESTLLTQ 266
+GA E A + G+STL+ Q
Sbjct: 950 MGASEAAVMLLTGPNMGGKSTLMRQ 974
Score = 37 (18.1 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
D K+S KK S K K + P ++ S + RRK R + DSE
Sbjct: 788 DYKDSVAKKYSCSIKFVDSGKVKYLLEMPENTKVSSSFELKSRRKGFIRYSTP---DSE 843
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 267 (99.0 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 49/94 (52%), Positives = 65/94 (69%)
Query: 162 AQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNF 221
A+ + H + FL PD I D +R P+Y+PKTL+VPP+F +KQTP QWWT+KSQ+F
Sbjct: 206 AERFDHESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPPDFHQKQTPGHRQWWTMKSQHF 265
Query: 222 DCVLFFKVGKFYELFHMDAVIGADELACSYMKES 255
D +L FKVGKFYE +HMDAV L ++M+ S
Sbjct: 266 DTILLFKVGKFYETYHMDAVEVVRALNIAFMRGS 299
Score = 226 (84.6 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 56/147 (38%), Positives = 80/147 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA L+K + C T F+THYHS+ PNV +M + DK N+
Sbjct: 1045 RGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENN 1104
Query: 449 G---IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIH 505
++ + FLY+L GICPKS+GF A+LAGI VV+ A+ +E+ L I
Sbjct: 1105 EDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVVRN----AY-LESNKFASNLIID 1159
Query: 506 -KFASLVKSG--EKVDVEELQKALESV 529
K LV+ + DV EL++ +E++
Sbjct: 1160 PKIRHLVECARDDNFDVGELKRMIEAI 1186
Score = 157 (60.3 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 41/145 (28%), Positives = 73/145 (50%)
Query: 245 DELACSYMKESGCTGEST-LLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGN 303
++L Y+K GE LL +L E + ++ E + +FE FD A G
Sbjct: 708 NKLRKEYIKVQK-EGEGCELLDELLGNEQE-----MEEVDENIYFFEKMFDRSTAMKDGK 761
Query: 304 IIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY 363
I+P AG D+EYDE ++ +K E+ Y + + C++ + ++ K KY+LE+P
Sbjct: 762 IVPNAGCDEEYDEALNRVKEALNELNDYKDSVAKKYSCSIKFVDSGKV--KYLLEMPEN- 818
Query: 364 ASKAKSNHQRVATKKKNVENYVTPE 388
+K S+ + + +++K Y TP+
Sbjct: 819 -TKVSSSFE-LKSRRKGFIRYSTPD 841
Score = 75 (31.5 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 5 SKESPEK-KGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
S E P+ K D+ + S K K +S +K+ SPV K PR S KR K + S SE
Sbjct: 29 SVEEPKSLKNDTPKISNDSEK-KVLKRSNSKTVS-SPV-KTPRNAS-KRPKVVVCSSSEG 84
Query: 64 DDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKNGNKR 121
+D D+G ED + +A +P S+ + TP + G K+
Sbjct: 85 ED---DDGDED-FEMKEAEEHESSDESEADENASDCEVVESPESTP-QSTPKRGGKKK 137
Score = 48 (22.0 bits), Expect = 1.6e-50, Sum P(4) = 1.6e-50
Identities = 14/75 (18%), Positives = 32/75 (42%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
+ KE+ E + ES ++ + +SP +S P+R K++ + +++ P
Sbjct: 94 EMKEAEEHESSDESEADENASDCEVVESP-----ESTPQSTPKRGGKKKISKPLLAENTP 148
Query: 64 DDMLQDNGSEDEYVP 78
+ G + +P
Sbjct: 149 KSVKMA-GKSKKVIP 162
Score = 40 (19.1 bits), Expect = 1.1e-49, Sum P(4) = 1.1e-49
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 16 ESSTPASSKGKKTSKSPAKSEDDSP-VTKRPRRKSAKRVKS 55
+S P +K+ + P ++D+P ++ +K KR S
Sbjct: 17 KSEKPEEEVKEKSVEEPKSLKNDTPKISNDSEKKVLKRSNS 57
Score = 39 (18.8 bits), Expect = 3.4e-29, Sum P(4) = 3.4e-29
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 171 QFLHPDHILDADRRSPKHPD 190
+ L H + RS KHPD
Sbjct: 659 RLLQKIHTIGLKYRSEKHPD 678
Score = 37 (18.1 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 296 KEASSAGNIIPKAGVDKEYDEVMD 319
K+ G + AGV + D++MD
Sbjct: 158 KKVIPDGEAVSMAGVLDKMDKIMD 181
Score = 37 (18.1 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 242 IGADELACSYMKESGCTGESTLLTQ 266
+GA E A + G+STL+ Q
Sbjct: 950 MGASEAAVMLLTGPNMGGKSTLMRQ 974
Score = 37 (18.1 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
D K+S KK S K K + P ++ S + RRK R + DSE
Sbjct: 788 DYKDSVAKKYSCSIKFVDSGKVKYLLEMPENTKVSSSFELKSRRKGFIRYSTP---DSE 843
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 241 (89.9 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 48/93 (51%), Positives = 63/93 (67%)
Query: 161 GAQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQN 220
GA+D ++FL D DA RR P +Y+P+TLY+PP+F+KK T QWW K+++
Sbjct: 337 GARD--SEKFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKH 393
Query: 221 FDCVLFFKVGKFYELFHMDAVIGADELACSYMK 253
D V+FFK+GKFYELF MDA +GA EL YMK
Sbjct: 394 MDKVVFFKMGKFYELFEMDAHVGAKELDIQYMK 426
Score = 222 (83.2 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 48/126 (38%), Positives = 76/126 (60%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T+DG IA LE F++ + C F+THYH ++ + P V+ +M+ +
Sbjct: 1166 RGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIG 1225
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH--NLRQLFIHK 506
G++ + FLY+L PG CPKS+G NVA LAG+P+ V++ + + EA + N R+ HK
Sbjct: 1226 GVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTD-HK 1284
Query: 507 FASLVK 512
A+++K
Sbjct: 1285 LAAMIK 1290
Score = 171 (65.3 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 37/115 (32%), Positives = 62/115 (53%)
Query: 274 TPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR 333
TP P++S +KYF++AFD EA ++G +IP G D+EYD ++ E ++ +L+
Sbjct: 851 TPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKHLK 910
Query: 334 TQCAHFG-CTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTP 387
Q G ++ Y K + Y+LEVP + +++ + + KK V Y TP
Sbjct: 911 EQRKLLGDASINYVTVGKDE--YLLEVPESLSGSVPHDYE-LCSSKKGVSRYWTP 962
Score = 61 (26.5 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 3 LDSKESPEKKGDS-ESSTPASSKGKKTSKS--------PAKSEDDSPVTKRPRRKSAKRV 53
L +K++P+ + +S +P+ S KKT K PA+S P T P + K+
Sbjct: 43 LSNKKTPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLPARSPSPGPDTPSPVQSKFKKP 102
Query: 54 KSAI-QSDSEPDDMLQDNGSE 73
I Q+ S P ++ G E
Sbjct: 103 LLVIGQTPSPPQSVVITYGDE 123
Score = 54 (24.1 bits), Expect = 1.5e-18, Sum P(4) = 1.5e-18
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 294 DHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR 333
DHK A+ II D +Y D + + T+LR
Sbjct: 1282 DHKLAAMIKQIISSVASDSDYSASKDSLCELHSMANTFLR 1321
Score = 48 (22.0 bits), Expect = 3.2e-48, Sum P(4) = 3.2e-48
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAK 51
+D +E E+K D E+S K + SK+ ++ S VTK K +K
Sbjct: 250 MDEEELVEEK-DEETS-----KVNRVSKTDSRKRKTSEVTKSGGEKKSK 292
Score = 46 (21.3 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 520 EELQKALESVKSFESQTKKDLED 542
EE A ++V+ FES KK L++
Sbjct: 889 EEYDCACKTVEEFESSLKKHLKE 911
Score = 44 (20.5 bits), Expect = 8.4e-48, Sum P(4) = 8.4e-48
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 24 KGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDEYVPPKA 81
K +S SP+ S S K+ + + KS S S P + N + +P ++
Sbjct: 27 KSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLPARS 84
Score = 43 (20.2 bits), Expect = 1.8e-47, Sum P(5) = 1.8e-47
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 21 ASSKGKKTSKSPAKSEDDSPVTKRPRRKS 49
+SS S SP+ S +P + P KS
Sbjct: 30 SSSSSPSPSPSPSLSNKKTPKSNNPNPKS 58
Score = 41 (19.5 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GADELACSYMKESGCTGESTLLTQLC 268
GA++ + + G+STLL Q+C
Sbjct: 1072 GAEKASFILLTGPNMGGKSTLLRQVC 1097
Score = 38 (18.4 bits), Expect = 1.8e-47, Sum P(5) = 1.8e-47
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 103 PTPSSSEAEVTPMKNGN 119
P+PS S + TP N N
Sbjct: 59 PSPSPSPPKKTPKLNPN 75
Score = 38 (18.4 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 181 ADRRSPKHPDYNPKTLYVPPEFLKKQTP 208
+++++PK + NPK+ P KK TP
Sbjct: 44 SNKKTPKSNNPNPKSPSPSPSPPKK-TP 70
Score = 37 (18.1 bits), Expect = 1.0e-35, Sum P(4) = 1.0e-35
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 242 IGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEAS 299
+G DE + ES +G +LC+ + P + +LLK A KE++
Sbjct: 926 VGKDEYLLE-VPES-LSGSVPHDYELCSSKKGVSRYWTPTIKKLLKELSQAKSEKESA 981
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 319 (117.4 bits), Expect = 6.1e-42, Sum P(2) = 6.1e-42
Identities = 84/262 (32%), Positives = 116/262 (44%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDD-SPVTKRPRRKSAKRVKSAIQSDSE 62
D PE++ + E+ P +S+ K ++ +SE++ P + RR S K + SDSE
Sbjct: 47 DEPSEPEEEEEMEAGAPYASE-KSEEENEMESEEEVQPKVQGSRRSSRHIKKRRVISDSE 105
Query: 63 PDDMLQDNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXD-PTPSSSEAEVTPMKNGN-K 120
D GS+ E+ P D P + + + NG+ K
Sbjct: 106 SDV----GGSDVEFKPDTKEEGSSDEMSSGVGDSDSEGLDSPVKIAPKRKRMVTGNGSLK 161
Query: 121 RGLSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXETTPST--SGAQD-------WSHNHYQ 171
R S K + P SG D W H +
Sbjct: 162 RKSSRKEMPSATKRAIGISSETRSTLSAFSAPQNSEPQAHISGGCDDSNRPTVWYHETLE 221
Query: 172 FLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGK 231
+L + D RR P HPD++ TLYVP +FL TP M +WW IKSQNFD V+F+KVGK
Sbjct: 222 WLKEERRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGK 281
Query: 232 FYELFHMDAVIGADELACSYMK 253
FYEL+HMDA+IG EL +MK
Sbjct: 282 FYELYHMDALIGVSELGLVFMK 303
Score = 203 (76.5 bits), Expect = 6.1e-42, Sum P(2) = 6.1e-42
Identities = 40/128 (31%), Positives = 71/128 (55%)
Query: 260 ESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMD 319
+S +L Q+ +++ P G FPD++ L ++ AFDH++A G I PKAG D +YD+ +
Sbjct: 733 KSKILKQVLTLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALA 792
Query: 320 EIKSIEKEIQTYLRTQCAHFGC-TVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378
+I+ E+ + YL Q + GC T++Y + +Y LE+P + ++ + + K
Sbjct: 793 DIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRN--RYQLEIPENFTTRNLPEEYELKSTK 850
Query: 379 KNVENYVT 386
K + Y T
Sbjct: 851 KGCKRYWT 858
Score = 37 (18.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 21/75 (28%), Positives = 29/75 (38%)
Query: 2 YLDSKESPEKKGDSESSTPASSKGKKTSKSPAK-------SEDD---SPVTKRPRRK--- 48
Y K E + +SE +G + S K SE D S V +P K
Sbjct: 64 YASEKSEEENEMESEEEVQPKVQGSRRSSRHIKKRRVISDSESDVGGSDVEFKPDTKEEG 123
Query: 49 SAKRVKSAI-QSDSE 62
S+ + S + SDSE
Sbjct: 124 SSDEMSSGVGDSDSE 138
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 181 (68.8 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 47/147 (31%), Positives = 79/147 (53%)
Query: 246 ELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNII 305
E S +K+SG +GE ++ QL PD++ELL+Y++ AFDH +A +G ++
Sbjct: 700 EYTMSLLKDSG-SGEG-VIGQLIK--------SMPDLTELLEYWKTAFDHNQAKESGILV 749
Query: 306 PKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYAS 365
PK GV++++D + I+ + +++ L+ G T I K+ Y +EVP K +
Sbjct: 750 PKPGVEEDFDSSQETIRQLHQDLDDLLKRTRRELGSTAICYRDNGKEI-YQMEVPIKVKN 808
Query: 366 KAKSNHQRVATKKKNVENYVTPECRGT 392
++ Q ATK+ V+ Y PE R T
Sbjct: 809 IPRNWDQMSATKQ--VKRYYFPELRTT 833
Score = 168 (64.2 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 52/155 (33%), Positives = 69/155 (44%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT + DG +A+ L IG L FATHYHS+A P + + M D+ N+
Sbjct: 1025 RGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDE-NE 1083
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQ-LFIHKF 507
+ FLYKL G+ SFG + A + GIP V++ A Q E L + L K
Sbjct: 1084 R--RVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVAAKQWEHTSRLTESLERRKG 1141
Query: 508 ASLVKSGEKVDVEELQKALESVKSFESQTKKDLED 542
LV G DV AL K E + + D
Sbjct: 1142 GGLVGLGWWSDVAW---ALRETKEGEDDSSAAITD 1173
Score = 165 (63.1 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 177 HILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELF 236
+I D D P+Y+P+TLY+PP K +P Q+W IK + +D V+FFK GKFYEL+
Sbjct: 262 NIRDIDGHPIGDPEYDPRTLYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFKKGKFYELY 321
Query: 237 HMDAVIG 243
DA IG
Sbjct: 322 ENDATIG 328
Score = 69 (29.3 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 14 DSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSA---KRVKSAIQSDSEPDDMLQDN 70
D+E T ++ K +S ++ EDD RP RK++ KR K + +SD E ++ +
Sbjct: 94 DAEDKTQSTKKVNYV-ESDSEGEDDDDEIFRPTRKNSRASKRRKLSPESDDEFEEEEGNA 152
Query: 71 G-SEDE 75
G SEDE
Sbjct: 153 GYSEDE 158
Score = 41 (19.5 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKR 44
K SP + + ASS G+K ++S + E + + +
Sbjct: 38 KSSPSTPS-TRNGEHASSPGQKAAESVKRDEKSAKIASK 75
Score = 41 (19.5 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDD 65
K + K D +S+ AS + P+ + +S K+V + ++SDSE +D
Sbjct: 58 KAAESVKRDEKSAKIASKFTQDLPPVPSSELGIPDDDAEDKTQSTKKV-NYVESDSEGED 116
Score = 39 (18.8 bits), Expect = 7.7e-23, Sum P(4) = 7.7e-23
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 239 DAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279
D +G + + G+STLL C GC+
Sbjct: 927 DIQLGGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQVGCY 967
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 181 (68.8 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 47/147 (31%), Positives = 79/147 (53%)
Query: 246 ELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNII 305
E S +K+SG +GE ++ QL PD++ELL+Y++ AFDH +A +G ++
Sbjct: 700 EYTMSLLKDSG-SGEG-VIGQLIK--------SMPDLTELLEYWKTAFDHNQAKESGILV 749
Query: 306 PKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYAS 365
PK GV++++D + I+ + +++ L+ G T I K+ Y +EVP K +
Sbjct: 750 PKPGVEEDFDSSQETIRQLHQDLDDLLKRTRRELGSTAICYRDNGKEI-YQMEVPIKVKN 808
Query: 366 KAKSNHQRVATKKKNVENYVTPECRGT 392
++ Q ATK+ V+ Y PE R T
Sbjct: 809 IPRNWDQMSATKQ--VKRYYFPELRTT 833
Score = 168 (64.2 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 52/155 (33%), Positives = 69/155 (44%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT + DG +A+ L IG L FATHYHS+A P + + M D+ N+
Sbjct: 1025 RGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDE-NE 1083
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQ-LFIHKF 507
+ FLYKL G+ SFG + A + GIP V++ A Q E L + L K
Sbjct: 1084 R--RVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVAAKQWEHTSRLTESLERRKG 1141
Query: 508 ASLVKSGEKVDVEELQKALESVKSFESQTKKDLED 542
LV G DV AL K E + + D
Sbjct: 1142 GGLVGLGWWSDVAW---ALRETKEGEDDSSAAITD 1173
Score = 165 (63.1 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 177 HILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELF 236
+I D D P+Y+P+TLY+PP K +P Q+W IK + +D V+FFK GKFYEL+
Sbjct: 262 NIRDIDGHPIGDPEYDPRTLYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFKKGKFYELY 321
Query: 237 HMDAVIG 243
DA IG
Sbjct: 322 ENDATIG 328
Score = 69 (29.3 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 14 DSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSA---KRVKSAIQSDSEPDDMLQDN 70
D+E T ++ K +S ++ EDD RP RK++ KR K + +SD E ++ +
Sbjct: 94 DAEDKTQSTKKVNYV-ESDSEGEDDDDEIFRPTRKNSRASKRRKLSPESDDEFEEEEGNA 152
Query: 71 G-SEDE 75
G SEDE
Sbjct: 153 GYSEDE 158
Score = 41 (19.5 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKR 44
K SP + + ASS G+K ++S + E + + +
Sbjct: 38 KSSPSTPS-TRNGEHASSPGQKAAESVKRDEKSAKIASK 75
Score = 41 (19.5 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDD 65
K + K D +S+ AS + P+ + +S K+V + ++SDSE +D
Sbjct: 58 KAAESVKRDEKSAKIASKFTQDLPPVPSSELGIPDDDAEDKTQSTKKV-NYVESDSEGED 116
Score = 39 (18.8 bits), Expect = 7.7e-23, Sum P(4) = 7.7e-23
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 239 DAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279
D +G + + G+STLL C GC+
Sbjct: 927 DIQLGGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQVGCY 967
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 238 (88.8 bits), Expect = 3.0e-36, Sum P(4) = 3.0e-36
Identities = 46/88 (52%), Positives = 62/88 (70%)
Query: 172 FLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGK 231
F P++ +D+ +R P+Y+P TLYVPPE LK+ TP M Q+W IKS NFD +LFFK+GK
Sbjct: 231 FALPENAMDSKKRKRTDPNYDPTTLYVPPESLKQFTPVMRQYWEIKSTNFDKILFFKLGK 290
Query: 232 FYELFHMDAVIGADELACSYMKESGCTG 259
FYELF+ DA+I EL ++M + TG
Sbjct: 291 FYELFYEDALITHKELDLNWMGKKMHTG 318
Score = 195 (73.7 bits), Expect = 3.0e-36, Sum P(4) = 3.0e-36
Identities = 50/146 (34%), Positives = 84/146 (57%)
Query: 390 RGTGTNDGCVIA----RVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMS-YIED 444
RGT T DG IA R +E LQ CL FATHYH + R P +A+ +M+ ++++
Sbjct: 1086 RGTSTFDGVAIAYSIVRYLVEN-LQSRCL--FATHYHVLLDEFRHYPQIAYYHMACHVDE 1142
Query: 445 KRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFI 504
KR+ ++FLY+L G C SFG NVA++ GI +++++ A + E N++ +
Sbjct: 1143 KRSK----VIFLYRLKAGECSSSFGINVAKVVGISDNLIEIAKQKAKEFEENLNIQHAYN 1198
Query: 505 --HKFASLVKSGEKVDVEE-LQKALE 527
+F L+K+ ++ D +E L++ +E
Sbjct: 1199 TNKRFGILMKAIQEYDRDENLEQIIE 1224
Score = 82 (33.9 bits), Expect = 3.0e-36, Sum P(4) = 3.0e-36
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 276 SGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYL 332
SG P S+ ++ F+N + +PK G+ YD + ++++EK++Q YL
Sbjct: 770 SGLLPPASKYIQEFQNYIVWQGPKGQEKPLPKKGLVNSYDLATEAVQNVEKKLQNYL 826
Score = 50 (22.7 bits), Expect = 3.0e-36, Sum P(4) = 3.0e-36
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 DSKESPEKKG-DSESSTPASSKGKKT----SKSPAKSEDDSPVTKRPRRKSAKRVKSA-I 57
D + P++K S+ TP G + +KS K +S ++ +AK+ + I
Sbjct: 149 DEEVKPKRKQKQSQQKTPVKKTGSASKAGATKSTPKFGQESAKKSATKQSTAKKAEDEFI 208
Query: 58 QSDSEPD 64
D E D
Sbjct: 209 NCDQEND 215
Score = 44 (20.5 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 18/79 (22%), Positives = 30/79 (37%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAI---QSD 60
D E E + D + S + K + +S+ +PV K A KS Q
Sbjct: 130 DDIEDIEDEEDDDDFIEDSDEEVKPKRKQKQSQQKTPVKKTGSASKAGATKSTPKFGQES 189
Query: 61 SEPDDMLQDNG--SEDEYV 77
++ Q +EDE++
Sbjct: 190 AKKSATKQSTAKKAEDEFI 208
Score = 37 (18.1 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 507 FASLVKSGEKVDVEELQKALESVKSFESQTKKDLED 542
F S ++ +EL++ + + E KK+L++
Sbjct: 864 FTSKAGKYQRFQTKELRELIAELDEAEDVQKKELKE 899
Score = 37 (18.1 bits), Expect = 8.5e-16, Sum P(3) = 8.5e-16
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 511 VKSGEKVDVEELQKALESVKSFESQTKKDLEDLPGGVAGAGTE 553
V S + + +++K + S +SQ+ + LE L T+
Sbjct: 531 VISVARYQIYDIEKGVRSCMILDSQSLQHLEILDSSSGPVSTQ 573
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 194 (73.4 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 57/170 (33%), Positives = 85/170 (50%)
Query: 373 RVATKKKNVENYVTPEC-RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLRE 430
+ ATK+ V + E RGT T DG IA L ++ + +FATHY S+A
Sbjct: 1095 KYATKRSLV---ILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTV 1151
Query: 431 EPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVA 490
++ YM+ D+ ++FLYKL G+CP S+G +VA +AG+P +++ +
Sbjct: 1152 RDLISTAYMTCHVDEE---AKKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKS 1208
Query: 491 FQMEARHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDL 540
QME + ++ FIH S K EK+ QK L + S T KDL
Sbjct: 1209 TQME-KDSVLVSFIHGTISRSKLVEKIVQSYKQKDLNQLIQL-SNTLKDL 1256
Score = 188 (71.2 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 38/78 (48%), Positives = 51/78 (65%)
Query: 170 YQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKV 229
Y FL +I DA+ HPDY+ +TL++P L K +P Q+W IKS+N+D V+FFK
Sbjct: 326 YSFLV--NIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKK 383
Query: 230 GKFYELFHMDAVIGADEL 247
GKFYEL+ DA IG +L
Sbjct: 384 GKFYELYESDADIGHQQL 401
Score = 104 (41.7 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 27/112 (24%), Positives = 54/112 (48%)
Query: 276 SGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQ 335
SG +P++ ++ +F ++ ++P G+ E+D+ + I+S+E+ +L Q
Sbjct: 805 SG-YPNLKPYIERVRKSFTIEQ----DRVVPSKGLFLEFDQCLGNIQSLEQSFAKHLEEQ 859
Query: 336 CAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTP 387
AHF C I + K+ Y +E+P + K + ++ K V Y +P
Sbjct: 860 KAHFKCNKIEYKHMGKEI-YQIEIPVAFTKKLPAGFSLKSSSSK-VNRYHSP 909
Score = 52 (23.4 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 15 SESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSED 74
++ S+ +SS T+ +P K+ +P K P + +R + D + DD QD+ +D
Sbjct: 236 NKPSSSSSSLNTNTTTTP-KAPTITP--KTPTKTPTRR--PVVTYDEDDDDDEQDDDEDD 290
Query: 75 E 75
+
Sbjct: 291 D 291
Score = 45 (20.9 bits), Expect = 6.6e-12, Sum P(3) = 6.6e-12
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 216 IKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCT--GESTLLTQLCNYESQ 273
+K C+ + K G + D + + S M +G G+STLL Q C
Sbjct: 990 VKDMRHPCI-YSKSGD--DFIPNDISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILVIM 1046
Query: 274 TPSGCFPDMS 283
GC+ S
Sbjct: 1047 AQMGCYVSAS 1056
Score = 43 (20.2 bits), Expect = 5.7e-32, Sum P(4) = 5.7e-32
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDD 38
D + +KK S ++T KG K K ++
Sbjct: 290 DDDDDDDKKSKSTTTTAVKKKGNAFGKKDKKEIEE 324
Score = 42 (19.8 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 31/144 (21%), Positives = 53/144 (36%)
Query: 250 SYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAGNIIPK-- 307
S S T S T N SQ P P LK +F K + ++ P
Sbjct: 63 SQQTSSANTSSSATTTTTTNTNSQIPKA--PTTPSKLK-LPTSFTSKSNTPTKSLPPSNF 119
Query: 308 ---AGVDKEYDEVMDEIKSIEKEIQTYLR-------TQCAHFGCTVIYSEAQKKQKKYV- 356
+E +E+ D K +++ Q + T + ++S + ++ K
Sbjct: 120 SLVVNEQEEENEMNDNSKPQQQQQQQQQQNLFKSNITSNSGGSSNDLFSRFKDEKPKTTT 179
Query: 357 -LEVPSKYASKAKSNHQRVATKKK 379
L PSK S+ + N+ +KK+
Sbjct: 180 TLSTPSKPLSQPQRNNTNEISKKR 203
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 189 (71.6 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 40/89 (44%), Positives = 52/89 (58%)
Query: 155 TTPSTSGAQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWW 214
T P T Y +L D I DA+R P HPDY+P ++YVPP ++ +P Q+W
Sbjct: 301 TKPKTKAHTREPEERYPWL-AD-IQDANRNRPGHPDYDPGSVYVPPSAWRQFSPFETQYW 358
Query: 215 TIKSQNFDCVLFFKVGKFYELFHMDAVIG 243
IK +D V+FFK GKFYEL+ DA IG
Sbjct: 359 EIKKNLWDTVVFFKKGKFYELYENDATIG 387
Score = 182 (69.1 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 46/135 (34%), Positives = 63/135 (46%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT + DG +A+ L IGC+ FATHYHS+A P + M D+ N
Sbjct: 1080 RGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARRMQIAVDEENK 1139
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQ-LFIHKF 507
I FLYKL G+ SFG + A + GIP+ V++ A + E L++ L K
Sbjct: 1140 ---RITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAAKEWEHTSRLKESLDRAKT 1196
Query: 508 ASLVKSGEKVDVEEL 522
+ G DV L
Sbjct: 1197 GCYIPLGVLSDVASL 1211
Score = 119 (46.9 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 34/112 (30%), Positives = 56/112 (50%)
Query: 280 PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHF 339
PD+ E L Y++ AFD K A +IP+ G+++++D E+ I+ E+Q L Q
Sbjct: 780 PDLKEPLGYWKTAFDRKRARDDKLLIPEPGIEEDFDRSQAELDRIKGELQELLERQKTAL 839
Query: 340 GC-TVIYSEAQKKQKKYVLEVPS--KYASKAKSNHQRVATKK---KNVENYV 385
C T +++ K+ Y +EVP K K + A K+ K +E+ V
Sbjct: 840 RCKTAKFTDVGKEV--YQIEVPKTVKVPPKWRQMSATSAVKRYYFKELEDLV 889
Score = 54 (24.1 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 239 DAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELL 286
D +G DE + + + G+ST+L C GC+ P +S L
Sbjct: 982 DIKLGGDEANINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPAVSARL 1030
Score = 48 (22.0 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 14 DSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDM 66
+S+ S K K+ + P+ S V+ P + + R + Q + DD+
Sbjct: 214 ESDQGPSKSKKRKRPAARPSAPRKKSAVSSPPSPRRSSRQEEYDQDEEMMDDV 266
Score = 47 (21.6 bits), Expect = 8.7e-33, Sum P(4) = 8.7e-33
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 27 KTSKSPAKSEDDSPVTKRPR-RKSAKRVKSAIQSDSEPD-DMLQDNGSEDEY----VP 78
++ + P+KS+ KRP R SA R KSA+ S P Q+ +DE VP
Sbjct: 214 ESDQGPSKSKK----RKRPAARPSAPRKKSAVSSPPSPRRSSRQEEYDQDEEMMDDVP 267
Score = 46 (21.3 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 15/66 (22%), Positives = 22/66 (33%)
Query: 10 EKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQD 69
E D S G+ S P++S V A + ++ E DDM
Sbjct: 149 ESSDDDGDDVFLSFSGRPKSSRPSRSRSRPQVLDEDDEDDAFEIDDNAINEEEDDDMADF 208
Query: 70 NGSEDE 75
+DE
Sbjct: 209 VVDDDE 214
Score = 40 (19.1 bits), Expect = 4.6e-32, Sum P(4) = 4.6e-32
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 5 SKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTK-RPRRKSAKRVKSAIQSDSEP 63
SK K+ + S P + SP +S + R +A++ +P
Sbjct: 220 SKSKKRKRPAARPSAPRKKSAVSSPPSPRRSSRQEEYDQDEEMMDDVPRTSTALKWKYDP 279
Query: 64 DDM 66
D++
Sbjct: 280 DNI 282
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 204 (76.9 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 68/247 (27%), Positives = 106/247 (42%)
Query: 4 DSKESP--EKKGDSESSTPASSKGKKTSKSPAKSEDDSPV-TKRPRRKSAKRVKSAIQSD 60
+ K+ P EK + +S+P ++ + + A+S+D+ V T R +R+ + S+
Sbjct: 115 ERKQQPLREKTTAALNSSPVAATRRSKQINYAESDDEEEVFTSRKKRRVVQD-----DSE 169
Query: 61 SEPDDMLQ-DNGSEDEYVPPKAXXXXXXXXXXXXXXXXXXXXDPTPSSSEAEVTPMKNGN 119
E DD ++GS+D+ D + P+ +
Sbjct: 170 EEEDDFKPAESGSDDD---DDMSDFVVDDDKDEDMEPVSDDDDEVVAPKTKSKKPLSKSS 226
Query: 120 KRGLSSKSGQXXXXXXXXXXXXXXXXXXXXXXXXET----TPSTSGAQDWSHNHYQFLHP 175
K SS SG T TPS + + YQ+L
Sbjct: 227 KPTSSSVSGILGRFDAGSGSFRQSSSVATPKPKSTTIKSLTPSKKSFEKENEERYQWL-V 285
Query: 176 DHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYEL 235
D I DA++R HPDY+P+TLY+P K T Q+W IKS+ ++ V+FF+ GKFYEL
Sbjct: 286 D-IRDAEKRPIDHPDYDPRTLYIPQSAWSKFTAFEKQYWQIKSKMWNTVVFFQKGKFYEL 344
Query: 236 FHMDAVI 242
+ DAVI
Sbjct: 345 YENDAVI 351
Score = 156 (60.0 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 40/114 (35%), Positives = 53/114 (46%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RG ++DG IA L + L FATHY ++ + P + M + D
Sbjct: 1050 RGGSSSDGFAIAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQLRMGIVVDS--- 1106
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL 502
G I FLYKL G PKSFG NVA + GIP+ +V A E L++L
Sbjct: 1107 GSRNITFLYKLETGTAPKSFGMNVASMCGIPDAIVDNAEIAAKAYEQTSKLKKL 1160
Score = 129 (50.5 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 43/138 (31%), Positives = 76/138 (55%)
Query: 259 GESTLLTQLCNYES---QTPSGCFP-DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEY 314
G S+ L N ES FP +M EL++ +E+AFD ++A + I+P AG D+E+
Sbjct: 727 GVSSKLVDFTNVESGMLYKYLKSFPHEMRELIQQWEDAFDREQAKN-DIIVPSAGTDEEF 785
Query: 315 DEV---MDEIKS-IEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSN 370
D M+++K+ ++K ++ Y RT + C Y ++ K+ Y++EVP K K +
Sbjct: 786 DNSQASMEDLKTQLDKLLKEYKRTYKSQEIC---YRDSGKEI--YLIEVPFKL--KVPGD 838
Query: 371 HQRVATKKKNVENYVTPE 388
+++ + K V+ Y +PE
Sbjct: 839 WKQMGSTSK-VKRYYSPE 855
Score = 57 (25.1 bits), Expect = 7.0e-17, Sum P(3) = 7.0e-17
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 5 SKESPEKKGDSESSTPASSK-----GKKTSKSPAK-SEDDSPVTKRPRRKSAKRVKSAIQ 58
++ SP +S ST S SK +K + SP++ P + + K +
Sbjct: 8 TRSSPNVGSNSTGSTKKQSSLMDFFKPMASKDKSKPKQQPSPLSSSPLKSKSNDTKPFLS 67
Query: 59 SDSEPDD 65
SD E DD
Sbjct: 68 SDKENDD 74
Score = 48 (22.0 bits), Expect = 5.9e-16, Sum P(3) = 5.9e-16
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSK--SPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
K P+++ SS+P SK T S K DD + + K+ V S Q D
Sbjct: 40 KSKPKQQPSPLSSSPLKSKSNDTKPFLSSDKENDDHSIMEN--HKNTTLVTS--QPDDSG 95
Query: 64 DDMLQ 68
D ++
Sbjct: 96 DKQIK 100
Score = 43 (20.2 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 234 ELFHMDAVIGADELACSYMKESGCTGESTLL--TQLCNYESQTPSGCF 279
E D +G DE + + G+STL+ T L SQ GC+
Sbjct: 947 EFIPNDVQLGGDEPHFGLLTGANAAGKSTLMRTTALAIILSQI--GCY 992
Score = 37 (18.1 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 254 ESGCTGESTLLTQLCNYESQTPSGCFPDMS-ELLKYFENAFDHK 296
++ CT TL+TQ+ E G ++ ++LK+ ++ DH+
Sbjct: 479 DAECTKLDTLITQINPKEIICEKGNLCQIATKILKFCTHS-DHQ 521
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 181 (68.8 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 178 ILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFH 237
I D DR SP HPD++ T+++PP K +P Q+W IK + +D V+FFK GKFYEL+
Sbjct: 299 IQDMDRHSPDHPDFDKSTIFIPPMAWNKFSPFEKQYWEIKQKLWDTVVFFKKGKFYELYE 358
Query: 238 MDAVIG 243
DA IG
Sbjct: 359 NDATIG 364
Score = 161 (61.7 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 37/113 (32%), Positives = 55/113 (48%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT + DG +A+ L IGC+ FATHYHS+A P + + M D D
Sbjct: 1061 RGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKRMQIQVD---D 1117
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQ 501
+ FLY+L G+ SFG + A + GI + V++ A + E L++
Sbjct: 1118 AKRRVTFLYRLEDGVAEGSFGMHCAAMCGISDRVIERAEVAAKEWEHTSRLKE 1170
Score = 118 (46.6 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D+ E L ++++AFD K+ +IP+ G+++++DE D I I+K++Q+ L Q A
Sbjct: 762 DLKEPLTFWKSAFDRKKVRDEKLLIPERGIEEDFDESADNIVRIKKDLQSLLDKQKAALK 821
Query: 341 CTVI-YSEAQKKQKKYVLEVPSKYASKAKSNHQRVAT 376
C + +++ K+ Y +E P K K Q AT
Sbjct: 822 CKSLKFTDVGKEI--YQIEAP-KSTKVPKDWRQMSAT 855
Score = 64 (27.6 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 8 SPEKKGDSESSTPASSKGKKTSKSP--AKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDD 65
+P K ++ +TPA+S GK+ S AKS S +K P R S ++ ++ +
Sbjct: 10 TPAKPTPAKKATPAASTGKQASILGFFAKSGTPSASSKLPTRSSEPNSSPCLKETTKSNT 69
Query: 66 MLQDNGSEDEYVP 78
+ ++ + P
Sbjct: 70 LARNKHPRENITP 82
Score = 57 (25.1 bits), Expect = 1.1e-30, Sum P(4) = 1.1e-30
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 17 SSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDEY 76
SS+P K + + + ED+ T R+S +R D + DD D+G D++
Sbjct: 114 SSSPVKKVKKVVNYAESSDEDEDVFTALNTRQSQRRRARPTLKDEDDDD--DDDG--DDF 169
Query: 77 VP-PKA 81
P P A
Sbjct: 170 RPEPDA 175
Score = 51 (23.0 bits), Expect = 4.6e-30, Sum P(4) = 4.6e-30
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQS 59
+ SP K ++S+T A +K + + +P S D + + A +K A+ +
Sbjct: 54 EPNSSPCLKETTKSNTLARNKHPRENITPVPSSDAIEPSSSQENRDASTIKRAVNN 109
Score = 50 (22.7 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 239 DAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELL 286
D +G D+ + + + G+ST+L C GC+ P +S L
Sbjct: 963 DIKLGGDDANINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPAVSARL 1011
Score = 47 (21.6 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKS-----EDDSPVTKR-PRRKSAKRVKSAI 57
DS P+K+ + + + K S SP K EDD V P+ +A++ +
Sbjct: 195 DSGSRPKKRKRANTKSGPPRKRNAASSSPVKEATRDVEDDDEVLGDVPQTSTAQQWRYDP 254
Query: 58 QSDSEPDDMLQDNGS 72
++ + P +D+ +
Sbjct: 255 ENPAPPPTKTKDSSA 269
Score = 47 (21.6 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 18/73 (24%), Positives = 26/73 (35%)
Query: 9 PEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQ 68
PE + T SS T KS K+++ + K P + K PD
Sbjct: 254 PENPAPPPTKTKDSSAHSSTQKSKPKTKEKA-CKKEPEDRYPWLAKIQDMDRHSPDH--P 310
Query: 69 DNGSEDEYVPPKA 81
D ++PP A
Sbjct: 311 DFDKSTIFIPPMA 323
Score = 44 (20.5 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 15 SESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDM 66
S++ P+SS+ + + + ++ ++ + K K+V + +S E +D+
Sbjct: 86 SDAIEPSSSQENRDASTIKRAVNNLVIASSSPVKKVKKVVNYAESSDEDEDV 137
Score = 39 (18.8 bits), Expect = 7.8e-29, Sum P(4) = 7.8e-29
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 11 KKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDS-EPDDMLQD 69
K G +S+ ++ + + SP E T + + + SD+ EP Q+
Sbjct: 38 KSGTPSASSKLPTRSSEPNSSPCLKETTKSNTLARNKHPRENITPVPSSDAIEPSSS-QE 96
Query: 70 N 70
N
Sbjct: 97 N 97
Score = 38 (18.4 bits), Expect = 9.8e-29, Sum P(4) = 9.8e-29
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKS--EDDSPVTKRPRRKSAKRVKS 55
D + + GD P ++ A DDS RP+++ KS
Sbjct: 157 DEDDDDDDDGDDFRPEPDAAMADDDDDDMADFVVSDDSDSGSRPKKRKRANTKS 210
Score = 38 (18.4 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 19/67 (28%), Positives = 24/67 (35%)
Query: 157 PSTSGAQDWSHN-HYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWT 215
P TS AQ W ++ P D+ S PKT E K+ P W
Sbjct: 242 PQTSTAQQWRYDPENPAPPPTKTKDSSAHSSTQKS-KPKT----KEKACKKEPEDRYPWL 296
Query: 216 IKSQNFD 222
K Q+ D
Sbjct: 297 AKIQDMD 303
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 194 (73.4 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 49/139 (35%), Positives = 69/139 (49%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA L + IGCL F+THY S+ V M+ D++
Sbjct: 1107 RGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEK-- 1164
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
I + FLYKL GICPKS+G NVA +AG+PE V+ A ++E FI+
Sbjct: 1165 -IRRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELE---QASASFINASD 1220
Query: 509 SLVKSGEKVDVEELQKALE 527
+ + + V + K++E
Sbjct: 1221 DIALMSDFLQVLRISKSIE 1239
Score = 159 (61.0 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 32/78 (41%), Positives = 46/78 (58%)
Query: 166 SHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVL 225
++ Y++L + DAD+ P+Y+P+TLY+PP P Q+W IK D V+
Sbjct: 336 NNERYEWLLD--VRDADQNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVV 393
Query: 226 FFKVGKFYELFHMDAVIG 243
FF+ GKFYEL+ DA IG
Sbjct: 394 FFQKGKFYELYENDAAIG 411
Score = 92 (37.4 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 280 PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHF 339
P+M E L+ + AF+ ++AS G P+ G + EYD ++ E+ L
Sbjct: 806 PNMKEELEAWTRAFNWQKASEEGVFEPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQL 865
Query: 340 GCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVA-TKKKNVENYVTPECR 390
C+ + + K+ Y +EVPS K N +++ TKK N Y E R
Sbjct: 866 RCSSLNFKNIGKEV-YQVEVPSDV--KVPVNWCKMSGTKKTN--RYYNDELR 912
Score = 56 (24.8 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 5 SKESPEKKGDSESSTPASSK-GKKTSKSPAKSED--DSPVTKRPRRKSAKRVKSAIQSDS 61
+ SPE++ + S A+++ +S P S D SP++ R S KR ++ +S
Sbjct: 69 NSSSPERELPTSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHRSSPKRPHDSLGEES 128
Query: 62 EPDDML-----QDNGSEDEYVPP 79
P +L Q+ SE+E P
Sbjct: 129 -PGKLLRTSVKQEPDSEEEIDSP 150
Score = 50 (22.7 bits), Expect = 8.1e-25, Sum P(4) = 8.1e-25
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 239 DAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279
D V+G + + G+STLL Q+C GC+
Sbjct: 1009 DVVLGGESPNMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCW 1049
Score = 49 (22.3 bits), Expect = 2.1e-28, Sum P(4) = 2.1e-28
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 4 DSKESPEKKGDSESSTPA----SSKGKKTSKSPAKSEDDSP 40
DS S DS TPA SS K S SP + SP
Sbjct: 41 DSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
Score = 41 (19.5 bits), Expect = 1.4e-27, Sum P(4) = 1.4e-27
Identities = 17/78 (21%), Positives = 30/78 (38%)
Query: 5 SKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKR---PRRKSAKRVKSAIQSDS 61
SK K+ S+S+ +SS +PA ++ S V K P R+ ++
Sbjct: 30 SKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEI 89
Query: 62 EPDDMLQDNGSEDEYVPP 79
+ + S D + P
Sbjct: 90 DSSSSMLPPPSSDPFSSP 107
Score = 38 (18.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 14/74 (18%), Positives = 32/74 (43%)
Query: 318 MDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLE---VPSKYASKAKSNHQRV 374
+DE++S+++++ Y + E++K+ + E + S+ AS + S
Sbjct: 250 IDEVESMDEDVDGY-SDHSVSVAAPIPKKESRKESSNSLYESYRLGSQIASPSPSVSGSA 308
Query: 375 ATKKKNVENYVTPE 388
+ K N + E
Sbjct: 309 SPTKSNKNGVLNRE 322
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 211 (79.3 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 38/78 (48%), Positives = 54/78 (69%)
Query: 170 YQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKV 229
+++L I DA+RR P P Y+ KTL++PP+ KK + Q+W++KS+ D VLFFKV
Sbjct: 231 FEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLFFKV 290
Query: 230 GKFYELFHMDAVIGADEL 247
GKFYEL+ +DA +G EL
Sbjct: 291 GKFYELYELDAELGHKEL 308
Score = 185 (70.2 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 46/130 (35%), Positives = 67/130 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA ++ + C +FATHYH + + P V ++M+ R+D
Sbjct: 936 RGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSD 995
Query: 449 ----GIDT-IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKF--GTTVAFQMEARHNLRQ 501
G D +VFLY+L G CP+S+G VA +AGIP VV+ G A + N +
Sbjct: 996 YQPRGCDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKS 1055
Query: 502 LFIH-KFASL 510
+ +F+SL
Sbjct: 1056 SELRSEFSSL 1065
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 293 FDHKEASSAGNIIPKAGVDKEYDEV 317
F+ KE + G+ + V K DEV
Sbjct: 39 FNVKEGDAKGDASVRFAVSKSVDEV 63
Score = 38 (18.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 518 DVEELQKALESVKSFESQTK 537
DVE + K L+ V+ F + ++
Sbjct: 604 DVESINKRLDVVEEFTANSE 623
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 215 (80.7 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 50/145 (34%), Positives = 82/145 (56%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT + DG IA TLE+ I C +F+THYH + ++ N++ +MS D D
Sbjct: 1097 RGTSSFDGTAIALSTLEQISDVIKCRCIFSTHYHLLVEEVKHNTNISNYHMSLSID---D 1153
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLF--IHK 506
+ I+FLYK + GICPKSFG ++A+LAG+P+++++ + E N+ F I K
Sbjct: 1154 DQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELAHEKSLLFE---NVTDEFCKIIK 1210
Query: 507 FASLVKSGEKVDVEELQKALESVKS 531
+ ++++S K + A+ S+ S
Sbjct: 1211 YKNIIRSLLKASDDTTLAAIASLHS 1235
Score = 182 (69.1 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 168 NHYQF---LHPDHILDADRRSPKHPDYNPKTLYVPPEFLK-----KQ---TPCMGQWWTI 216
N ++F + P++I D + +P HP+Y+ T++ PP+ + KQ TP M Q+W I
Sbjct: 251 NSFEFPKWIQPEYIRDINLNAPDHPNYDSSTIWTPPQDHQWAIEYKQAHYTPGMQQFWKI 310
Query: 217 KSQNFDCVLFFKVGKFYELFHMDAVI 242
KS+NFD ++FFK+G+FYE+F++DA I
Sbjct: 311 KSKNFDKIIFFKMGRFYEIFYIDACI 336
Score = 49 (22.3 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 491 FQMEARHNLRQLFIHKFA-SLVKSG-EKVDVEELQKALESVKSFESQTKKD 539
+++E N+ + F+ + + VK G ++ EE++ +E ++ E Q KKD
Sbjct: 830 YEIECPDNVPKSFLKEVEITSVKKGFVRIQNEEIKNLVEMLEDIE-QEKKD 879
Score = 44 (20.5 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 306 PKAGVDKEYDEVMDEIKSIEKEIQTYL 332
P G D D + + K IEKE+ L
Sbjct: 783 PADGCDDAIDAINKKEKDIEKELNNIL 809
Score = 44 (20.5 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 350 KKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPE 388
KK++K +L+ S Y KKK EN+V E
Sbjct: 130 KKKRKIILD--SSYDDDDDCESDSNDKKKKKKENFVKNE 166
Score = 42 (19.8 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 277 GCFPDM----SELLK--YFENAFDHKEASSAGNIIP-----KAGVDKEYDEVMDEIKSIE 325
G +P++ +E L+ YF+ ++K A + I + ++KE + ++ +IK I
Sbjct: 757 GNYPEIDKITNEFLEKIYFDGEKEYKPADGCDDAIDAINKKEKDIEKELNNILVDIKKIL 816
Query: 326 K 326
K
Sbjct: 817 K 817
Score = 39 (18.8 bits), Expect = 8.5e-13, Sum P(3) = 8.5e-13
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 226 FFKVGKFYELFHMDAVIGADELACSYMK 253
F K+ +FY+LF D + D A +++
Sbjct: 578 FCKI-EFYDLFKKDNYMVLDATALKHLE 604
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 175 (66.7 bits), Expect = 7.4e-27, Sum P(3) = 7.4e-27
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 166 SHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVL 225
+ YQ+L + DA R P P+Y+P+TL++P + + TP Q+W IKS+ +DC++
Sbjct: 202 NEERYQWLVDER--DAAGRPPSDPEYDPRTLHIPAQAWARFTPFEKQYWQIKSKMWDCIV 259
Query: 226 FFKVGKFYELFHMDAVIGADEL 247
FFK GKF+EL+ DA + A++L
Sbjct: 260 FFKKGKFFELYEKDAHL-ANQL 280
Score = 135 (52.6 bits), Expect = 7.4e-27, Sum P(3) = 7.4e-27
Identities = 39/114 (34%), Positives = 53/114 (46%)
Query: 390 RGTGTNDGCVIARVTLEKF-LQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RG ++DG IA L + L FATHY ++ + P V M+ + D +
Sbjct: 993 RGGSSSDGFAIAEGVLHHISTHVQSLGFFATHYGTLGQSFTHHPMVKPLQMAILVD---E 1049
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL 502
G + FLYKL+ G SFG +VA + GIP VV+ A E H R L
Sbjct: 1050 GSKKVTFLYKLIEGQSEGSFGMHVAAMCGIPRSVVENAERAAESFE--HTSRIL 1101
Score = 127 (49.8 bits), Expect = 7.4e-27, Sum P(3) = 7.4e-27
Identities = 35/132 (26%), Positives = 66/132 (50%)
Query: 263 LLTQLCNYE-SQTPSGCFPDMSELLKY----FENAFDHKEASSAGNIIPKAGVDKEYDEV 317
L++ L YE S + S D+ LK + +D A S G ++P AGV+ ++D
Sbjct: 657 LISSLNEYELSGSLSRFLHDIPSTLKSDVESWTTLYDRNMAVSEGKVVPNAGVEPDFDVS 716
Query: 318 MDEIKSIEKEIQTYLRTQCAHFGCTVI-YSEAQKKQKKYVLEVPSKYASKAKSNHQRVAT 376
+ +++++E+E+ L F C+ I Y ++ K+ Y +E+P A SN ++
Sbjct: 717 LSKMRALEEELDAVLSEYKRSFKCSKIQYKDSGKEL--YTIELPISIAKSVPSNWTQLGA 774
Query: 377 KKKNVENYVTPE 388
K + + Y +P+
Sbjct: 775 NK-STKRYYSPK 785
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 234 ELFHMDAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF 279
E D +G + + + G+ST+L C GC+
Sbjct: 890 EFIPNDVHLGKSTAQIALLTGANAAGKSTILRMTCIAVIMAQLGCY 935
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 204 (76.9 bits), Expect = 8.4e-26, Sum P(4) = 8.4e-26
Identities = 38/82 (46%), Positives = 56/82 (68%)
Query: 166 SHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVL 225
+ + +++L+P +I DA+RR P Y+ TL++PP+ L+K + Q+W IK + D VL
Sbjct: 363 ARSKFEWLNPSNIRDANRRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNIKCKYMDVVL 422
Query: 226 FFKVGKFYELFHMDAVIGADEL 247
FFKVGKFYEL+ +DA IG EL
Sbjct: 423 FFKVGKFYELYEVDAEIGQKEL 444
Score = 188 (71.2 bits), Expect = 8.4e-26, Sum P(4) = 8.4e-26
Identities = 38/111 (34%), Positives = 61/111 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRN- 447
RGT T DG IA ++ + C +FATHYH + + P+V ++M+ + RN
Sbjct: 1055 RGTSTFDGYAIAYAVFRHLVEAVRCRLLFATHYHPLTKEFASHPHVTLQHMACMLKPRNG 1114
Query: 448 -DGIDT-IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
DG + + FLY+L G CP+S+G VA +AG+P +V+ + M ++
Sbjct: 1115 GDGGEKELTFLYRLTSGACPESYGLQVATMAGLPRSIVERASAAGEMMRSK 1165
Score = 38 (18.4 bits), Expect = 8.4e-26, Sum P(4) = 8.4e-26
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 104 TP-SSSEAEVTPMKNGNKRGLSSKSGQ 129
TP + S+++ TP+++ +K S +G+
Sbjct: 196 TPLTESDSDQTPLQHPSKFSFVSPNGE 222
Score = 38 (18.4 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 518 DVEELQKALESVKSFESQTKKDLEDLPGGV 547
DV E+Q ++S F++ T L L V
Sbjct: 618 DVSEIQTLIDSRGYFKASTSSWLSALNSSV 647
Score = 37 (18.1 bits), Expect = 8.4e-26, Sum P(4) = 8.4e-26
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 30 KSPAKSEDDSPVT-KRPRRKSAKRVKSAIQSDSEPDDMLQDNGSED 74
K PA + + T +RP R A V ++ P Q +D
Sbjct: 19 KKPAAAAGEEGATPERPPRPPAASVAGIMERLVRPPRQQQQGRDQD 64
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 180 (68.4 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 188 HPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
+P Y+P TLY+PP+ K T M Q+W IK+++FD ++ FK+GKFYELF+ DA+I L
Sbjct: 207 NPQYDPTTLYIPPQEFSKLTSAMKQYWQIKAKHFDKIILFKMGKFYELFYEDAIIATRLL 266
Query: 248 ACSYM-KESGC 257
++ KE C
Sbjct: 267 DITFTNKELHC 277
Score = 143 (55.4 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 37/118 (31%), Positives = 60/118 (50%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA L+ F++ I +FATH+ + LR ++F +M Y D ++
Sbjct: 1004 RGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLINELRFYKEISFYHMEYYYDNKSK 1063
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
++F YKL G SFG ++A++ GI + V+ Q+E ++L + K
Sbjct: 1064 ---KLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQKK--QLEFENSLEYAEVEK 1116
Score = 95 (38.5 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 33/108 (30%), Positives = 51/108 (47%)
Query: 260 ESTLLTQLCNYESQ-TP--SGCFPDMSELLKYFEN--AFDHKEASSAGNI---IPKAGVD 311
+S L +LC Y + P SG P +S +K E+ D KE + I +PK G
Sbjct: 658 KSQRLKRLCTYRLKGDPKLSGDLPKVSSFIKVLEDIIVLDSKEKIAGKYIEQPVPKDGFC 717
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEV 359
+EYD + +IK+ + E+ YL F I S A ++Y ++V
Sbjct: 718 QEYDSIRLQIKAYQDELDQYLEQLKVKFKTNDI-SYAFLNNRQYDIQV 764
Score = 41 (19.5 bits), Expect = 3.5e-19, Sum P(4) = 3.5e-19
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 312 KEYDEVMDEIKSIEKEIQ-TYLRTQ 335
KE+ +++ +K IEK I+ T++ Q
Sbjct: 630 KEFKNLINSMKEIEKLIEETFMVNQ 654
Score = 39 (18.8 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKS-PAKSED 37
+ SK++ K S S S +K S S P K E+
Sbjct: 148 MQSKQTTFKNSTSRQSKQYSGDNQKGSLSIPNKEEE 183
Score = 39 (18.8 bits), Expect = 3.7e-14, Sum P(4) = 3.7e-14
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 491 FQMEARHNLRQLFIHKFASLVKSGEKVD-VEELQKALESVKS 531
F +++ Q F +F S EKV +EEL++ L+ + S
Sbjct: 778 FSLQSHSGSFQRFTSRFTS-----EKVAFIEELEEQLKEILS 814
Score = 38 (18.4 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 13/66 (19%), Positives = 29/66 (43%)
Query: 288 YFENAFDHKEASSAGNIIPKAG-VDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYS 346
+ E +D+K K G + + + +I IE+ + + + F ++ Y+
Sbjct: 1053 HMEYYYDNKSKKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQKKQLEFENSLEYA 1112
Query: 347 EAQKKQ 352
E +K+Q
Sbjct: 1113 EVEKQQ 1118
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 187 (70.9 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 36/87 (41%), Positives = 53/87 (60%)
Query: 156 TPSTSGAQDWSHNHYQFLHPDHILDADRRSPKHPDYNPKTLYVPPEFLKKQTPCMGQWWT 215
T +S + YQ+L + DA RR P+Y+P+TLY+P K TP Q+W
Sbjct: 263 TSKSSKFNKQNEERYQWLVDER--DAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWE 320
Query: 216 IKSQNFDCVLFFKVGKFYELFHMDAVI 242
IKS+ +DC++FFK GKF+EL+ DA++
Sbjct: 321 IKSKMWDCIVFFKKGKFFELYEKDALL 347
Score = 157 (60.3 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 44/150 (29%), Positives = 77/150 (51%)
Query: 279 FPD-MSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCA 337
FP+ + E +K + NAF+ ++A + I+P+ G D E+D+ MD I+ +E E+ L T
Sbjct: 749 FPEGLVEAVKSWTNAFERQKAINENIIVPQRGFDIEFDKSMDRIQELEDELMEILMTYRK 808
Query: 338 HFGCTVI-YSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTN- 395
F C+ I Y ++ K+ Y +E+P SN ++A K + Y + E R +
Sbjct: 809 QFKCSNIQYKDSGKEI--YTIEIPISATKNVPSNWVQMAANK-TYKRYYSDEVRALARSM 865
Query: 396 -DGCVIARVTLEKFLQIGCLTVFATHYHSV 424
+ I + TLE+ L+ F HY+++
Sbjct: 866 AEAKEIHK-TLEEDLKNRLCQKFDAHYNTI 894
Score = 136 (52.9 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 41/131 (31%), Positives = 61/131 (46%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RG ++DG IA L I L FATHY ++A + P V MS + D +
Sbjct: 1065 RGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVD---E 1121
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
+ FLYK++ G SFG +VA + GI ++++ A +E H R + A
Sbjct: 1122 ATRNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAADNLE--HTSRLVKERDLA 1179
Query: 509 SLVKSGEKVDV 519
+ +GE V V
Sbjct: 1180 ANNLNGEVVSV 1190
Score = 70 (29.7 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 14 DSESSTPASSKGKKTSKSPAKSEDD-SPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGS 72
D + S+ S + K + A+S+DD S T +RK K + S+S+ D+ L D
Sbjct: 124 DEDLSSSQSRRNHKRRVNYAESDDDDSDTTFTAKRKKGK----VVDSESDEDEYLPDKND 179
Query: 73 EDE 75
DE
Sbjct: 180 GDE 182
Score = 50 (22.7 bits), Expect = 1.3e-20, Sum P(4) = 1.3e-20
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 17 SSTPASSK--GKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDD--------- 65
S P S T++ + + D+ + + RR +RV A D + D
Sbjct: 102 SQEPQSDTMLNSNTTEPKSTTTDEDLSSSQSRRNHKRRVNYAESDDDDSDTTFTAKRKKG 161
Query: 66 -MLQDNGSEDEYVPPK 80
++ EDEY+P K
Sbjct: 162 KVVDSESDEDEYLPDK 177
Score = 45 (20.9 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 239 DAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELL 286
D +G ++ + + G+ST+L C GC+ P S +L
Sbjct: 967 DIELGKEQPRLGLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVL 1015
Score = 44 (20.5 bits), Expect = 5.4e-20, Sum P(4) = 5.4e-20
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 7 ESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDS 61
E E GD + + K S S SP T+ R ++K+ Q+ S
Sbjct: 196 ELAEDSGDDDDLISLAETTSKKKFSYNTSHSSSPFTRNISRDNSKKKSRPNQAPS 250
Score = 42 (19.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSKSPA--KSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
K+S + S S P+ S+ TSKS K ++ R + +R KS + D P
Sbjct: 241 KKSRPNQAPSRSYNPSHSQPSATSKSSKFNKQNEERYQWLVDERDAQRRPKSDPEYD--P 298
Query: 64 DDMLQDNGSEDEYVP 78
+ + + +++ P
Sbjct: 299 RTLYIPSSAWNKFTP 313
Score = 37 (18.1 bits), Expect = 8.1e-22, Sum P(4) = 8.1e-22
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 354 KYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRG 391
KY+ P KS +K EN + P+ RG
Sbjct: 744 KYISSFPEGLVEAVKSWTNAFERQKAINENIIVPQ-RG 780
Score = 37 (18.1 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 474 ELAGIPEDVVKFGTTVAFQME---ARHNLRQLFIHKFASLVKSGEKVDVE-ELQKALES 528
+LAGIPE ++ QM A+ + R+ + A ++ G K V+ ELQ L S
Sbjct: 365 QLAGIPEMSFEYWAAQFIQMGYKVAKVDQRESML---AKEMREGSKGIVKRELQCILTS 420
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 180 (68.4 bits), Expect = 1.0e-16, Sum P(4) = 1.0e-16
Identities = 51/163 (31%), Positives = 91/163 (55%)
Query: 390 RGTGTNDGCVIARVTLEKFLQI-GCLTVFATHYHSVAR-RLREEPNVAFEYMSYIEDKRN 447
RGT TNDG IA TL+ +++ C +F THY +A+ L+ V +M Y+E+K++
Sbjct: 1262 RGTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLELQYPTQVGNFHMGYLEEKQD 1321
Query: 448 DG-----IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL 502
I ++FLYKLV G S+G N+A LAG+P +V+ A ++ + +++
Sbjct: 1322 QQLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVI------ADALKKSNEMKES 1375
Query: 503 FIHKFASLVKSGEKVDVEELQKALESV-KSFES-QTKKDLEDL 543
+ A+L G+ D ++++ ++S+ K++ S +T + DL
Sbjct: 1376 ITRR-ANL-SDGK--DQQQIENEIKSIIKNWNSNRTTLNSNDL 1414
Score = 78 (32.5 bits), Expect = 1.0e-16, Sum P(4) = 1.0e-16
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 3 LDSKESP---EKKGDSESSTPASSKGKKTSKSPAKSEDDSP-VTKRPRRKSAKRVKSAI- 57
+D+KE EK+ + + STP + + K S+ P ++K+ ++K
Sbjct: 130 IDNKEKEKEKEKEKEKDKSTPTKTTSSRVKKDTEVSKSIPPKLSKQTKKKQISSDNDIYD 189
Query: 58 -QSDSEPDDMLQDNGSEDEYVPPK 80
+ DSE +D+ D+ E+E V K
Sbjct: 190 DEKDSEEEDLEDDHDDEEEKVVVK 213
Score = 68 (29.0 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSD--S 61
+ K +P K +S P +SK T +S A DS + + + K ++ K +S
Sbjct: 95 EKKATPNKSNSPQS--PQTSKSPLTRRSSANGNSDSKIDNKEKEKEKEKEKEKDKSTPTK 152
Query: 62 EPDDMLQDNGSEDEYVPPK 80
++ + + +PPK
Sbjct: 153 TTSSRVKKDTEVSKSIPPK 171
Score = 67 (28.6 bits), Expect = 1.0e-16, Sum P(4) = 1.0e-16
Identities = 29/115 (25%), Positives = 54/115 (46%)
Query: 282 MSELLKYFENAFDHKEASSAGNI-IPKAG--VDKE-YD---EVMDEIKSIEKEIQTYLRT 334
+S+ +KYF + + + A G + K+ VD E Y+ E ++I+ +EKE + L+
Sbjct: 951 LSKRIKYFLSNINKETAKEYGTVGCDKSNLWVDLEKYEKIRETKEKIEQVEKEFKNVLKN 1010
Query: 335 QCAHFGCTVI-YSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPE 388
+ Y +Y+LE+P + + KS + +T+K + Y PE
Sbjct: 1011 IRKELSKPSLEYHHMPGLGLEYLLELPPSFKAVPKSWIKVNSTQK--MARYHAPE 1063
Score = 59 (25.8 bits), Expect = 8.5e-15, Sum P(4) = 8.5e-15
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 4 DSKESPEKK--GDSESSTPASSKGKKTSKS-PAKSED-DSPVT-KRP--RRKSAKRVKSA 56
D+K++ + K D+E ++K +K K+ P KS SP T K P RR SA +
Sbjct: 69 DNKKTKKSKDTSDNEDMVDDNNKQQKEKKATPNKSNSPQSPQTSKSPLTRRSSANGNSDS 128
Query: 57 IQSDSEPDDMLQDNGSEDEYVPPK 80
+ E + + +D+ P K
Sbjct: 129 KIDNKEKEKEKEKEKEKDKSTPTK 152
Score = 58 (25.5 bits), Expect = 1.0e-16, Sum P(4) = 1.0e-16
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVI 242
TP Q+ IK +N D VL + G Y+ F DA +
Sbjct: 454 TPLEQQYIAIKKENPDTVLMVECGYKYKFFGEDAEV 489
Score = 56 (24.8 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 9 PEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQ 68
P++ S TP S K T +++D K + + K KS SD+E DM+
Sbjct: 33 PKQTLMSSFFTPVS---KSTDTKEINNKEDKDEDKDKDKDNKKTKKSKDTSDNE--DMVD 87
Query: 69 DNGSEDE 75
DN + +
Sbjct: 88 DNNKQQK 94
Score = 52 (23.4 bits), Expect = 4.3e-14, Sum P(4) = 4.3e-14
Identities = 24/85 (28%), Positives = 35/85 (41%)
Query: 4 DSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPV---TKRPRRKSAKRVKS-AIQS 59
D+KE K+ D + KKT KS S+++ V K+ + K A KS + QS
Sbjct: 50 DTKEINNKE-DKDEDKDKDKDNKKTKKSKDTSDNEDMVDDNNKQQKEKKATPNKSNSPQS 108
Query: 60 DSEPDDML----QDNGSEDEYVPPK 80
L NG+ D + K
Sbjct: 109 PQTSKSPLTRRSSANGNSDSKIDNK 133
Score = 51 (23.0 bits), Expect = 5.4e-14, Sum P(4) = 5.4e-14
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 29 SKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDE 75
S S ED+ P K +K K+ S S+SE D + + + E E
Sbjct: 258 SFSSESEEDEKPKKKIIGKKRKKKDDSDFDSESESDTISEASEVEPE 304
Score = 50 (22.7 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 346 SEAQKKQKKYVLEVPS-KYASKAKSNHQRVATKKKNVE 382
SEA + + + ++ S K+ SK K+N++ KKKN E
Sbjct: 296 SEASEVEPESEEDLDSFKFNSKKKNNNKNNNNKKKNDE 333
Score = 43 (20.2 bits), Expect = 3.4e-13, Sum P(4) = 3.4e-13
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 14 DSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDN 70
+SE +T SS+ K P ++ S T + K + + D E D +DN
Sbjct: 15 ESEKTTTTSSRKKAPVVDPKQTLMSSFFTPVSKSTDTKEINNKEDKD-EDKDKDKDN 70
Score = 43 (20.2 bits), Expect = 3.4e-13, Sum P(4) = 3.4e-13
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 10 EKKGDSESSTPASSKG-KKTSKSPAKSEDDSPVTK-RPRRKSAKRVKSAIQSDSEPDDML 67
+KK DS+ + + S + S+ +SE+D K ++K+ + + + + E +D
Sbjct: 279 KKKDDSDFDSESESDTISEASEVEPESEEDLDSFKFNSKKKNNNKNNNNKKKNDEYEDEE 338
Query: 68 QDNGSE 73
+D E
Sbjct: 339 EDEDDE 344
Score = 42 (19.8 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 345 YSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYV 385
Y +K+ VL V Y K VA K N+ +YV
Sbjct: 460 YIAIKKENPDTVLMVECGYKYKFFGEDAEVANKVLNIYSYV 500
Score = 41 (19.5 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 280 PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQ 329
P+ E L F+ F+ K+ ++ N K D+ DE DE + K+I+
Sbjct: 303 PESEEDLDSFK--FNSKKKNNNKNNNNKKKNDEYEDEEEDEDDELFKDIE 350
Score = 39 (18.8 bits), Expect = 8.4e-13, Sum P(4) = 8.4e-13
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 5 SKESPEKKGDSESSTPASSKGKKTS--KSPAKSEDDSPVTKRPRRKSAKRV 53
SK++ +K+ S++ K + + E++ V K+P + ++K +
Sbjct: 173 SKQTKKKQISSDNDIYDDEKDSEEEDLEDDHDDEEEKVVVKKPSKPTSKSI 223
Score = 39 (18.8 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 306 PKAGVDKEYDEVMDEIKSIE--KEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY 363
PKAG K+ + EI+S E K +Q G + S+ + ++ K + SK
Sbjct: 387 PKAG--KKLLKAHLEIQSKEEAKRLQQANGGGGDGGGGQIKGSDDEDEEVKKPTKGGSKA 444
Query: 364 ASKAKS------NHQRVATKKKNVENYVTPEC 389
++K K Q +A KK+N + + EC
Sbjct: 445 SAKKKGPAYTPLEQQYIAIKKENPDTVLMVEC 476
Score = 38 (18.4 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 351 KQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTG 393
+++K V++ PSK SK+ + + A+ K T TG
Sbjct: 206 EEEKVVVKKPSKPTSKSIT--AKPASTKATTTTTTTTTTTSTG 246
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 199 (75.1 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA+ +E Q+ C T+FATHYH + + L E P++ ++ ED+
Sbjct: 783 RGTSTLDGISIAQSVVEYLNQVNRCRTLFATHYHELTKNLDETPHIKCYCLAIQEDE--- 839
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
D I+F +K+VPG+ KS+G A++AGIP V++ ++ F++E+ + L
Sbjct: 840 --DEILFTHKIVPGMSNKSYGIFCAKMAGIPNSVLERSKSILFELESNNKL 888
Score = 67 (28.6 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 210 MGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
M Q+ K + + +LFF++G FYE+F DA I ++ L
Sbjct: 1 MEQYSGFKKKYPNEILFFRLGDFYEMFDEDAKIASNLL 38
Score = 56 (24.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 287 KYFENAFDHKEASSAGNII 305
+YFEN F + E +SAG+I+
Sbjct: 264 EYFENEFSNDELNSAGSIL 282
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 165 (63.1 bits), Expect = 5.3e-15, Sum P(5) = 5.3e-15
Identities = 49/155 (31%), Positives = 78/155 (50%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLRE-----EPNVAFEYMSYIE 443
RGT T+DG IA L+ ++ CLT+F THY S+AR NV + S +
Sbjct: 996 RGTSTHDGAAIAHAVLDHVVRNTRCLTLFITHYQSLARVAEGLGTGLVRNVHMRFTSSRD 1055
Query: 444 DK------RNDGI-DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
D ++D + + I FLY++ G+ +S+G NVA LA IP +++ + +ME
Sbjct: 1056 DNDDGDKDQDDDVGENITFLYEVADGVAHRSYGLNVARLARIPRKILEVAARKSRKMEED 1115
Query: 497 HNLRQL-FIHKFASLVKSGEKVDVEELQKALESVK 530
R+L K V G+ D ++L+ L S++
Sbjct: 1116 VRTRRLRSATKLLEAVCRGDGSD-DQLEHLLSSIE 1149
Score = 77 (32.2 bits), Expect = 5.3e-15, Sum P(5) = 5.3e-15
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 5 SKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPD 64
S+E E+ DS +P+S + K P + + D+ T+RPR ++KR K+ + D E D
Sbjct: 38 SEEDEERTADS---SPSSRDNVR--KRPLEQDPDAGNTRRPR--ASKRAKNVV-IDDEDD 89
Query: 65 DMLQDNGSEDE 75
+ DN +D+
Sbjct: 90 E--HDNDDDDD 98
Score = 64 (27.6 bits), Expect = 5.3e-15, Sum P(5) = 5.3e-15
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELA 248
K TP Q+ IK ++ D VL +VG + F DA I EL+
Sbjct: 225 KLTPMELQFLEIKRKHMDTVLIVEVGYKFRFFGEDARIAGKELS 268
Score = 58 (25.5 bits), Expect = 5.3e-15, Sum P(5) = 5.3e-15
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 309 GVDKEYDEVMDE---IKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYAS 365
G D E DE+ + I ++E+E+ + A G +Y++EVP+
Sbjct: 720 GDDGE-DEITTQKMSIAAVEQELDAHRSDAAATLGRKKAVDYVTVAGIEYLIEVPNTEIR 778
Query: 366 KAKSNHQRVATKKKNVENYVTPE 388
K ++ +++ KK + + TPE
Sbjct: 779 KVPASWAKISGTKK-LSRFHTPE 800
Score = 45 (20.9 bits), Expect = 7.2e-12, Sum P(5) = 7.2e-12
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 19 TPASSKGKK--TSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPD 64
TP + G K TS P SE+D T S V+ + +PD
Sbjct: 20 TPKTVNGLKRPTSSRPGTSEEDEERTADSSPSSRDNVRKR-PLEQDPD 66
Score = 41 (19.5 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 7 ESPEKKGDS-ESSTPASSKGKKTSKSPAK 34
+ E+ GD+ E P KGKK K
Sbjct: 197 QEEEEDGDAAEEEPPPPPKGKKKGAKSGK 225
Score = 41 (19.5 bits), Expect = 1.8e-11, Sum P(5) = 1.8e-11
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSE 62
+D ++ D + ++ + P + DD+ + SA R I +S+
Sbjct: 84 IDDEDDEHDNDDDDDDFKLDAEAE-ADPEPVVAADDTAGVSQSSSISASRAGRYIYDESQ 142
Query: 63 PDDMLQ--DNG 71
P + +NG
Sbjct: 143 PKGQAKTDENG 153
Score = 37 (18.1 bits), Expect = 5.3e-15, Sum P(5) = 5.3e-15
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 107 SSEAEVTPMKNGNKRGLSSKSGQ 129
++E E P G K+G +KSG+
Sbjct: 205 AAEEEPPPPPKGKKKG--AKSGK 225
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 154 (59.3 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRN 447
RGT T DG IA +E ++Q I T+F+THYH + E P V + +++K
Sbjct: 683 RGTSTYDGISIAEAIIE-YIQKKIKARTLFSTHYHELTGLEGEIPGVK-NFTVLVQEKGE 740
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVK 484
+ + FL+K+VPG KS+G VA+LAG+P +VV+
Sbjct: 741 E----VKFLHKVVPGKTDKSYGIYVAKLAGLPREVVE 773
Score = 119 (46.9 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP M Q+ IK Q DC+LFF++G FYELF DAVI + EL
Sbjct: 4 TPMMKQYLDIKKQYSDCLLFFRLGDFYELFFEDAVIASREL 44
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 141 (54.7 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A E + T+FATHY + +P VA +++ E
Sbjct: 696 RGTSTFDGLSLAWAAAEDLARTRAFTLFATHYFELTVLPESQPAVANVHLNATEHN---- 751
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVK 484
+ IVFL+ ++PG +S+G VA+LAG+P V++
Sbjct: 752 -ERIVFLHHVLPGPASQSYGLAVAQLAGVPSPVIQ 785
Score = 95 (38.5 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDA 240
L + TP M Q++ +K Q+ D ++F+++G FYELF+ DA
Sbjct: 4 LSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDA 41
Score = 79 (32.9 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 274 TPSGCFPDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR 333
T G +P+++ELL + D+ A + K G D E DE+ ++ + +
Sbjct: 394 TTIGTYPELAELLA--KAIIDNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEA 451
Query: 334 TQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECR 390
+ A G + + Y +E+P A +A +++ R T K E ++TPE +
Sbjct: 452 REKARTGLPNL-KVGYNRIHGYFIELPRVQAEQAPADYIRRQTLK-GAERFITPELK 506
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 200 (75.5 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 46/117 (39%), Positives = 69/117 (58%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEP-NVAFEYMSYI---ED 444
RGT T+DG IA TL+ L + CL +F THY +A P +V ++SY+ +D
Sbjct: 900 RGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKD 959
Query: 445 KRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQ 501
K + D + +LYKLV G+C +SFGF VA+LA IP ++ ++A ++EA R+
Sbjct: 960 KGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRARE 1016
Score = 64 (27.6 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 197 YVPP-EFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGA 244
YVP +K TP Q +KS+ D VL +VG Y F DA I A
Sbjct: 94 YVPETSSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAA 142
Score = 49 (22.3 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 15 SESSTPASSKGKKTSKSPAKSE--DDSPVTKRPRR-KSAKRVKSAIQSDSEPDDMLQD-- 69
+ESSTP S SP+K + D P++ K + ++ + + LQ
Sbjct: 28 AESSTPPPKISATVSFSPSKRKLLSDHLAAASPKKPKLSPHTQNPVPDPNLHQRFLQRFL 87
Query: 70 NGSEDEYVP 78
S +EYVP
Sbjct: 88 EPSPEEYVP 96
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 144 (55.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 37/106 (34%), Positives = 56/106 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A + E +IG +T+FATHY + P++A ++ +E D
Sbjct: 704 RGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVE--HGD 761
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
GI F++ + G KS+G VA LAG+P+ V+K Q+E
Sbjct: 762 GI---AFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLE 804
Score = 119 (46.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 199 PPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCT 258
P E L TP M Q+ +K++N D +LF+++G FYELF+ DA ++ L S K
Sbjct: 8 PSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASA 67
Query: 259 GE 260
GE
Sbjct: 68 GE 69
Score = 50 (22.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 416 VFATHYHSVARRLREEPNVAFEYMSYIEDKRND--GIDTIVFLYKLVPG 462
V A Y + R+ N A E++ +E + D GIDT+ Y V G
Sbjct: 431 VIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHG 479
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 296 KEASSAGNIIPKAGV 310
K +SAG IP AGV
Sbjct: 62 KRGASAGEPIPMAGV 76
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 195 (73.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 45/110 (40%), Positives = 66/110 (60%)
Query: 390 RGTGTNDGCVIARVTLEKFL---QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IAR +E ++GC T+FATHYH + RE P V +M+ +E
Sbjct: 792 RGTSTYDGMAIARAVVEYIHDHPRLGCRTLFATHYHELIALERELPRVRNYHMAAVE--- 848
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
DG +VFL++L PG +S+G +VAELAGIP +V++ + + +E +
Sbjct: 849 RDG--RVVFLHELRPGGADRSYGIHVAELAGIPPEVIRRASALLADLEGQ 896
Score = 65 (27.9 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 212 QWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
Q+ +K + D +L F+ G FYE F DA + A+ L
Sbjct: 12 QYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELL 47
Score = 43 (20.2 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 21/100 (21%), Positives = 39/100 (39%)
Query: 294 DHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYL-RTQCAHFGCTVIYS-EAQKK 351
++ A+ G P+ + +D+ +D + + Q ++ R + T I S +
Sbjct: 502 NYLRAAEEGGERPRRVIRPGFDQRLDALIRASRHAQEFIDRLESKERERTGIRSLKVGYN 561
Query: 352 QK-KYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECR 390
Q Y +E+ +K H N E YVT E +
Sbjct: 562 QVFGYYIEISRAVDAKLIPAHYERKQTLVNAERYVTEELK 601
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 156 (60.0 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 49/154 (31%), Positives = 79/154 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A+ +E QIG T+F+THYH + + ++S IE+ +
Sbjct: 690 RGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVSAIEE---N 746
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
G +VFL+K+ G KS+G +VA+LA +P+ ++ V Q+E + ++ I K
Sbjct: 747 G--KVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLEGQE---EIVIPKRV 801
Query: 509 SLVKSGEKVDVEELQKALESVKSFESQTKKDLED 542
VK+ E+ + E E E +TK D E+
Sbjct: 802 E-VKAQEQEVIPEPIVVKEEPIEIE-ETKVDNEE 833
Score = 100 (40.3 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGE 260
+ + TP + Q+ +K+ D LFF++G FYE+F DAV A EL + G + E
Sbjct: 1 MTQYTPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSE 58
Score = 48 (22.0 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 258 TGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAF 293
+G+ST + QL + GCF P +L F+ F
Sbjct: 611 SGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIF 647
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 145 (56.1 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 50/179 (27%), Positives = 86/179 (48%)
Query: 369 SNHQRVATKKKNVENYVTPEC-RGTGTNDGCVIARVTLEKFL--QIGCLTVFATHYHSVA 425
SN AT+K V + E RGT T DG I++ + K++ ++ T+ ATH+ +
Sbjct: 671 SNILNNATEKSLV---ILDEVGRGTSTYDGIAISKAIV-KYISEKLKAKTLLATHFLEIT 726
Query: 426 RRLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKF 485
L + Y +E K +GI FLY L G SFG VA+LAG+PE+VV+
Sbjct: 727 E-LEGKIEGVKNYHMEVE-KTPEGIR---FLYILKEGKAEGSFGIEVAKLAGLPEEVVEE 781
Query: 486 GTTVAFQMEARHNLRQLFIHKFASLVKSGEKVD-VEELQKALESVKSFESQTKKDLEDL 543
+ ++E + N ++ + K E+ +EE ++ ++ ++ + L+ L
Sbjct: 782 ARKILRELEEKENKKEDIVPLLEETFKKSEEAQRLEEYEEIIKKIEEIDIGNTTPLQAL 840
Score = 115 (45.5 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 204 KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
K+ TP + Q+ K+Q DC+L F++G FYELF+ DA IG+ EL
Sbjct: 6 KELTPMLSQYHYFKNQYPDCLLLFRLGDFYELFYEDAYIGSKEL 49
Score = 44 (20.5 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 305 IPKAGVDKE-YDEVMDEIKSIEKEIQTYLRT-----------QCAHFGCTVI---YSEAQ 349
+ + G+ +E + +DE++ I +TYLR Q G + Y E
Sbjct: 413 VKEGGLIREGVNAYLDELRFIRDNAETYLREYEKKLRQETGIQSLKIGYNKVMGYYIEVT 472
Query: 350 KKQKKYVLEVPSKYASKAK-SNHQRVATKK 378
K KYV PS + + SN +R T++
Sbjct: 473 KPNLKYV---PSYFRRRQTLSNSERFTTEE 499
Score = 37 (18.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 193 PKTLYVPPEFLKKQT 207
P YVP F ++QT
Sbjct: 474 PNLKYVPSYFRRRQT 488
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 153 (58.9 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 54/168 (32%), Positives = 79/168 (47%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +I LT+FATHY + + + VA ++ +E
Sbjct: 697 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH---- 752
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
G DTI F++ + G KS+G VA LAG+P++V+K AR LR+L
Sbjct: 753 G-DTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIK---------RARQKLREL-----E 797
Query: 509 SLVKSGEKVDVEELQKALESVKSFESQTKKDLEDL-PGGVAGA-GTEW 554
S+ + V+ Q +L SV S + LE+L P + EW
Sbjct: 798 SISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEW 845
Score = 99 (39.9 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGE 260
TP M Q+ +K+Q+ + +LF+++G FYELF+ DA + L S K GE
Sbjct: 11 TPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGE 64
Score = 48 (22.0 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 355 YVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECR 390
Y +++ + A N+ R T K N E Y+ PE +
Sbjct: 473 YYIQISRGQSHLAPINYMRRQTLK-NAERYIIPELK 507
Score = 40 (19.1 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 296 KEASSAGNIIPKAGV 310
K +SAG IP AG+
Sbjct: 57 KRGASAGEPIPMAGI 71
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 151 (58.2 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 65/229 (28%), Positives = 99/229 (43%)
Query: 329 QTYLRTQCAHFGCTVIYSEAQ--KKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVT 386
Q L T AH GC V A + + S + +S T+ N+ + T
Sbjct: 630 QVALITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNAT 689
Query: 387 PEC--------RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFE 437
+ RGT T DG +A E Q +G +T+FATHY L + P E
Sbjct: 690 AQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFE----LTQLP----E 741
Query: 438 YMSYIEDKRNDGI---DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
MS + + D I DTI F++ + G KS+G VA LAG+P V+K Q+E
Sbjct: 742 LMSGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPARVIKAAKHKLHQLE 801
Query: 495 ARHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDL 543
+R + + +L+ E V+ + K L+++ ++ T K DL
Sbjct: 802 SRDHQVEGTKTPIQTLLALPEPVENPAVSK-LKAINP-DNLTPKQALDL 848
Score = 105 (42.0 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACS 250
L+K TP M Q+ ++K+++ D +LF+++G FYELF+ DA ++ L S
Sbjct: 9 LEKHTPMMRQYLSMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGIS 56
Score = 80 (33.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 35/136 (25%), Positives = 61/136 (44%)
Query: 262 TLLTQLCNYESQTPSGCFPDMSELLKYF---ENAFDHKEASSAGNIIPKAGVDKE-YDEV 317
+LL QL SQ + + +LL F + +H + +I GV +E Y+
Sbjct: 377 SLLPQLQLSLSQLSAPHTVKLGQLLGEFPQEQQLLEHAIVDNPPMLIRDGGVIREGYNAE 436
Query: 318 MDEIKSIEKEIQTYL-RTQCAHFGCTVIYS--EAQKKQKKYVLEVPSKYASKAKSNHQRV 374
+DE + + + YL + + T I + + Y +EV +++ N+QR
Sbjct: 437 LDEWRGLSEGASDYLVQLEAREKERTGIATLKVGYNRVHGYYIEVSRLQSNQVPLNYQRR 496
Query: 375 ATKKKNVENYVTPECR 390
T K N+E Y+TPE +
Sbjct: 497 QTLK-NMERYITPELK 511
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 145 (56.1 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 42/154 (27%), Positives = 80/154 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A+ +E IG T+F+THYH + + E+ + + ++ + +
Sbjct: 685 RGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHELT--VLEDKLPQLKNV-HVRAEEYN 741
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
G T+VFL+++ G KS+G +VA+LA +P D++ + ++E N ++ + K
Sbjct: 742 G--TVVFLHQIKEGAADKSYGIHVAQLAELPGDLIARAQDILKELEHSGNKPEVPVQKPQ 799
Query: 509 SLVKSGEKVDVEELQKALESVKSFESQTKKDLED 542
+ + +E +K E+ K S+ +K + D
Sbjct: 800 VKEEPAQLSFFDEAEKPAETPKL--SKKEKQVID 831
Score = 96 (38.9 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGE 260
TP + Q+ IK+++ D LFF++G FYE+F DA + EL + G E
Sbjct: 5 TPMIQQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAE 58
Score = 58 (25.5 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 281 DMSELLKYFENAFDHKEAS-SAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHF 339
D+ ELL+ E +++ S GN+I K G +++ DE D ++ + I + + +
Sbjct: 389 DVLELLE--EALYENPPLSVKEGNLI-KDGYNQKLDEYRDASRNGKDWIARLEQQEREYT 445
Query: 340 GCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECR 390
G + K Y+ + + ++R T N E Y+TPE +
Sbjct: 446 GIRSLKVGFNKVFGYYIEVTKANLHLLEEGRYERKQTLT-NAERYITPELK 495
Score = 46 (21.3 bits), Expect = 9.7e-12, Sum P(3) = 9.7e-12
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 258 TGESTLLTQLCNYESQTPSGCF-PDMSELLKYFENAF 293
+G+ST + Q+ GCF P +L F+ F
Sbjct: 606 SGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIF 642
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 166 (63.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 47/132 (35%), Positives = 64/132 (48%)
Query: 376 TKKKNVENYVTPEC--------RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVAR 426
T+ N+ N+ TP RGT T DG IA E I C T+FATHYH +
Sbjct: 746 TETANILNHATPRSLVLLDEIGRGTATFDGLAIAWAVAEYLASHIRCRTIFATHYHELNE 805
Query: 427 RLREEPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFG 486
VA Y +++ D IVFL+++ PG +S+G V LAG+P VV
Sbjct: 806 LASVVSGVA-NYQVTVQELA----DRIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVARA 860
Query: 487 TTVAFQMEARHN 498
TV Q+E +H+
Sbjct: 861 RTVLAQVE-QHS 871
Score = 85 (35.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP + Q+ +K+Q+ C+L +++G FYE F DA I + EL
Sbjct: 22 TPMLQQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSREL 62
Score = 43 (20.2 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 199 PPEFLKKQT 207
PPE+L+KQT
Sbjct: 554 PPEYLRKQT 562
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 174 (66.3 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 47/158 (29%), Positives = 81/158 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLRE-EPNVAFEYMSYI----E 443
RGT T+DG IA TLE F++ + LT+F THY V + V +M ++ E
Sbjct: 969 RGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYSQQVGNYHMGFLVNEDE 1028
Query: 444 DKRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K++ G D + FLY++ G +S+G NVA+LA +P +++K + + ++E N
Sbjct: 1029 SKQDPGEEDKVPDFVTFLYQITRGSAARSYGLNVAKLADVPGEILKKAASKSKELEGLVN 1088
Query: 499 LRQLFIHKFASLVKSGEKVDVEELQK--ALESVKSFES 534
++ + FA L + D+++ +E + F S
Sbjct: 1089 RKRKRLKSFAKLWTINDAKDLQKWTDDFEMEEITDFSS 1126
Score = 62 (26.9 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 11 KKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQS 59
KK E+ P K KK + +S DS +++ P K +R ++ ++S
Sbjct: 77 KKRPLENDEPVKKKAKKAQEKEGRS--DSVMSENPEPKKHQRTRTVLKS 123
Score = 60 (26.2 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP Q+ +K Q D +L + G Y F DA I A EL
Sbjct: 218 TPLELQYLEMKQQQKDAILCVECGYKYRFFGEDAEIAAREL 258
Score = 45 (20.9 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 27 KTSKSPAKSEDDSPVTKRPRRKSAKRVKS-AIQSDS-EP 63
++ K P E+D PV K+ ++ K +S ++ S++ EP
Sbjct: 75 RSKKRPL--ENDEPVKKKAKKAQEKEGRSDSVMSENPEP 111
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPR 46
+ S++S + + + +++S++ K+ D P KR +
Sbjct: 171 VSSEDSKSQTSQKDKALGHCGSSQRSSENSQKTSDSKPSNKRTK 214
Score = 42 (19.8 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 333 RTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNV 381
RT+ + + Y E +++QK +L V Y + +A ++ N+
Sbjct: 212 RTKSVYTPLELQYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNI 260
Score = 42 (19.8 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 5 SKESPEKKGDSES---STPASSKGKKTS---KSPAKSE----DDSPVTKRPRRKSAKRVK 54
+K++ EK+G S+S P K ++T KS K + D +P+ R R + +
Sbjct: 91 AKKAQEKEGRSDSVMSENPEPKKHQRTRTVLKSLEKLKEFCCDSAPLQNRVRTEPLRERF 150
Query: 55 SAIQSDSEPDDM 66
+ + ++ DD+
Sbjct: 151 AVLPKCTDFDDI 162
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 164 (62.8 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 41/146 (28%), Positives = 77/146 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T+DG IA+ L+ ++ I LT+F THY ++ + P+ + +
Sbjct: 960 RGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGT 1019
Query: 449 GIDT-IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL--FIH 505
G D I FLY++ G+ +S+G NVA LA +P +++ + ++E + R+L F+
Sbjct: 1020 GADEDITFLYEIGEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKIRRRRLAGFVA 1079
Query: 506 KFASLVKSGEKVD--VEELQKALESV 529
++V+S + + +E L ++E +
Sbjct: 1080 AVGAVVQSNQADESVIERLVSSMEEL 1105
Score = 66 (28.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELA 248
K TP Q IK ++ D +L +VG + F DA I A EL+
Sbjct: 194 KLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELS 237
Score = 66 (28.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 17 SSTP-ASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDE 75
SS P ASS K P S + + P++ ++ + I +DSE D L ++ ED
Sbjct: 5 SSQPSASSSPNLKRKQPTISSFFTKKPQAPKQSTSNEGPAPIDNDSEITDKLAEDDEEDI 64
Query: 76 YVP-PK 80
P PK
Sbjct: 65 VAPVPK 70
Score = 49 (22.3 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 7 ESPEKKGDSESSTPASSKGKKTSKSPAKSEDD--SPVTKRPRRKSAKRV 53
++P++ +E P + + T K E+D +PV KR + + V
Sbjct: 32 QAPKQSTSNEGPAPIDNDSEITDKLAEDDEEDIVAPVPKRTKSNGSLTV 80
Score = 43 (20.2 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSKSPAK 34
+E+ E D E+ P KGK K K
Sbjct: 166 EEAAEGDEDDETPQPVQPKGKAGKKGGGK 194
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 164 (62.8 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 41/146 (28%), Positives = 77/146 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T+DG IA+ L+ ++ I LT+F THY ++ + P+ + +
Sbjct: 960 RGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGT 1019
Query: 449 GIDT-IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL--FIH 505
G D I FLY++ G+ +S+G NVA LA +P +++ + ++E + R+L F+
Sbjct: 1020 GADEDITFLYEIGEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKIRRRRLAGFVA 1079
Query: 506 KFASLVKSGEKVD--VEELQKALESV 529
++V+S + + +E L ++E +
Sbjct: 1080 AVGAVVQSNQADESVIERLVSSMEEL 1105
Score = 66 (28.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELA 248
K TP Q IK ++ D +L +VG + F DA I A EL+
Sbjct: 194 KLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELS 237
Score = 66 (28.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 17 SSTP-ASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQDNGSEDE 75
SS P ASS K P S + + P++ ++ + I +DSE D L ++ ED
Sbjct: 5 SSQPSASSSPNLKRKQPTISSFFTKKPQAPKQSTSNEGPAPIDNDSEITDKLAEDDEEDI 64
Query: 76 YVP-PK 80
P PK
Sbjct: 65 VAPVPK 70
Score = 49 (22.3 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 7 ESPEKKGDSESSTPASSKGKKTSKSPAKSEDD--SPVTKRPRRKSAKRV 53
++P++ +E P + + T K E+D +PV KR + + V
Sbjct: 32 QAPKQSTSNEGPAPIDNDSEITDKLAEDDEEDIVAPVPKRTKSNGSLTV 80
Score = 43 (20.2 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 6 KESPEKKGDSESSTPASSKGKKTSKSPAK 34
+E+ E D E+ P KGK K K
Sbjct: 166 EEAAEGDEDDETPQPVQPKGKAGKKGGGK 194
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 187 (70.9 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVA-RRLREEPNVAFEYMSYI---ED 444
RGT T DG I+ L Q I +F TH+ S+ R E + +M Y+ ED
Sbjct: 842 RGTSTIDGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILERRFEGQLRCFHMGYLKSKED 901
Query: 445 KRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH-NLRQ-L 502
+I FLYKLVPG+ KS+G NVA +AGIP ++ T ++ E +H N R+ +
Sbjct: 902 FETSVSQSISFLYKLVPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHRNARKNV 961
Query: 503 FIHKFASL--VKSGEKVDVEEL 522
FI K A L + + E++D + L
Sbjct: 962 FIRKVAKLLMILNAEEIDFKRL 983
Score = 57 (25.1 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 242 IGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-PDMSELLKYFEN 291
+ +D + C + G+S+ + QL SGCF P S LL F++
Sbjct: 747 LSSDGVRCLLITGPNMGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFDS 797
Score = 56 (24.8 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 243 GADELACSYMKESGCTGESTLLTQLCNYESQTPSGCFPDMSELLKYFENAFDHKEASSAG 302
G + A ++ K S +S LL +L Q PS +S ++ +F FD KEA +
Sbjct: 500 GFYKAASAFSKNSYSCFKSALLRRLIQ---QLPS-----ISSIIDHFLGMFDQKEAENNN 551
Query: 303 NIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR 333
+ +D +D + +E ++ E+ +R
Sbjct: 552 KVDMFKDIDN-FD-LSEEPNDVDYELAQEIR 580
Score = 51 (23.0 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACS 250
TP Q+ +K + +L +VG + F DA I ++ L S
Sbjct: 104 TPLEQQYLELKKNYQETILAIEVGYKFRFFGKDAKIASEVLGIS 147
Score = 40 (19.1 bits), Expect = 9.6e-11, Sum P(4) = 9.6e-11
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 317 VMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEV 359
V ++K + +Q + ++C G +I +K + + L +
Sbjct: 326 VQQDVKLALENLQDFFSSKCIMSGSKIIELHMEKVKSLHSLSI 368
Score = 37 (18.1 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
Identities = 7/40 (17%), Positives = 21/40 (52%)
Query: 16 ESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKS 55
E++ +S + + + ++++P+ R++ + VKS
Sbjct: 43 ENNVGSSKNSYQEDEGSSSIDENAPLISIKRKRRIRTVKS 82
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 165 (63.1 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 390 RGTGTNDGCVIARVTLEKFL----QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDK 445
RGT T DG IA+ +E FL ++G +FATHYH + L E+ Y +++
Sbjct: 720 RGTSTYDGYSIAKAVVE-FLHNRGKVGIRALFATHYHQLTA-LEEKLKRVKNYHIAVKE- 776
Query: 446 RNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
DG + +VFL K+VPG +S+G +VA LAG+PE V++ + ++E R N+
Sbjct: 777 --DGHE-LVFLRKIVPGATDRSYGIHVARLAGVPEKVIERANEILKELE-RENV 826
Score = 81 (33.6 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP M Q++ K D ++FF++G FYE F DA A EL
Sbjct: 6 TPAMRQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKEL 46
Score = 46 (21.3 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 276 SGCFPDMSELLKYFEN------AFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEI- 328
SG P++ EL N AF KE +G K G +K + ++ + ++
Sbjct: 449 SGYSPELDELRDISSNSKQWIAAFQQKERERSGIKSLKVGYNKVFGYYIEVTHANSSQVP 508
Query: 329 QTYLRTQ 335
+ Y+R Q
Sbjct: 509 EDYIRKQ 515
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 155 (59.6 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 40/108 (37%), Positives = 58/108 (53%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCL---TVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IA+ +E L T+FATHYH + P V Y + + R
Sbjct: 696 RGTSTYDGLAIAQAVVEYIHSQPSLHAKTLFATHYHELVELANYLPRVK-NYNIAVSEDR 754
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
+ +VFL+++VPG KS+G +VA+LAG+P V+K V ++E
Sbjct: 755 GE----VVFLHRIVPGGVDKSYGIHVAKLAGLPGWVIKRAYEVLTELE 798
Score = 84 (34.6 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP Q+ IK + ++FF++G FYE F DA I A EL
Sbjct: 5 TPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAAREL 45
Score = 52 (23.4 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 27/114 (23%), Positives = 51/114 (44%)
Query: 280 PDMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYL-RTQCAH 338
P+M +++ N D G +I ++G + E MD++ S+ + +T+L + +
Sbjct: 398 PEMLDIVNEAIND-DPPSTLGEGKVI-RSGFNPE----MDKLCSLAGDARTFLSQMEARE 451
Query: 339 FGCTVIYSE--AQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECR 390
T I S + Y +EV + + N+ R T N E ++TPE +
Sbjct: 452 REQTGIKSLKLGYNRVFGYYIEVSNANLADIPQNYIRKQTLV-NAERFITPELK 504
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 181 (68.8 bits), Expect = 3.3e-12, Sum P(4) = 3.3e-12
Identities = 48/149 (32%), Positives = 81/149 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLRE-EPNVAFEYMSYI----E 443
RGT T+DG IA TLE F++ + LT+F THY V + V +M ++ E
Sbjct: 967 RGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYSQQVGNYHMGFLVNEDE 1026
Query: 444 DKRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K++ G D+++FLY++ GI +S+G NVA+LA +P +++K + + ++E N
Sbjct: 1027 SKQDAGEEDQVPDSVIFLYQITRGIAARSYGLNVAKLADVPGEILKKAASKSKELEGLVN 1086
Query: 499 LRQLFIHKFASLVKSGEKVDVEELQKALE 527
+++ + F L D ++LQK E
Sbjct: 1087 MKRKKLKCFTKLWTVN---DAKDLQKWTE 1112
Score = 60 (26.2 bits), Expect = 3.3e-12, Sum P(4) = 3.3e-12
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP Q+ +K Q D +L + G Y F DA I A EL
Sbjct: 218 TPLELQYLEMKQQQKDAILCVECGYKYRFFGEDAEIAAREL 258
Score = 47 (21.6 bits), Expect = 3.3e-12, Sum P(4) = 3.3e-12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 30 KSPAKS-EDDSPVTKRPRRKSAKRVKS-AIQS-DSEPDDMLQ 68
+S K+ E D PV K+ R+ K +S ++ S +SEP L+
Sbjct: 75 RSKKKALESDGPVKKKARKVQEKEEESDSLMSGNSEPKKHLR 116
Score = 46 (21.3 bits), Expect = 4.1e-12, Sum P(4) = 4.1e-12
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 11 KKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQS 59
KK ES P K +K + + E DS ++ K R ++ ++S
Sbjct: 77 KKKALESDGPVKKKARKVQEK--EEESDSLMSGNSEPKKHLRTRTVLKS 123
Score = 45 (20.9 bits), Expect = 3.3e-12, Sum P(4) = 3.3e-12
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 319 DEIKSIEKEIQTYLR 333
DEI+ + K+IQT+L+
Sbjct: 705 DEIQDVTKKIQTHLQ 719
Score = 44 (20.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 296 KEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQ 335
K S G + KA +E +E D + S E + +LRT+
Sbjct: 79 KALESDGPVKKKARKVQEKEEESDSLMSGNSEPKKHLRTR 118
Score = 41 (19.5 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 333 RTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNV 381
RT+ + + Y E +++QK +L V Y + +A ++ N+
Sbjct: 212 RTKSIYTPLELQYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNI 260
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 183 (69.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 49/163 (30%), Positives = 85/163 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEY-MSYI--ED- 444
RGT T+DG IA TLE F++ + LT+F THY V + P Y M ++ ED
Sbjct: 97 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDG 156
Query: 445 -KRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K++ G D++ FLY++ GI +S+G NVA+LA +P ++++ + ++E N
Sbjct: 157 SKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREILQKAAHKSKELEGLVN 216
Query: 499 LRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLE 541
LR+ + F L + D+ LE ++ ++ +++
Sbjct: 217 LRRKRLEYFIDLWTTHSVKDLHTRAAELE-IQEIQTSPHNEMK 258
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 183 (69.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 49/163 (30%), Positives = 85/163 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEY-MSYI--ED- 444
RGT T+DG IA TLE F++ + LT+F THY V + P Y M ++ ED
Sbjct: 98 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDG 157
Query: 445 -KRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K++ G D++ FLY++ GI +S+G NVA+LA +P ++++ + ++E N
Sbjct: 158 SKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREILQKAAHKSKELEGLVN 217
Query: 499 LRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLE 541
LR+ + F L + D+ LE ++ ++ +++
Sbjct: 218 LRRKRLEYFIDLWTTHSVKDLHTRAAELE-IQEIQTSPHNEMK 259
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 153 (58.9 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 37/111 (33%), Positives = 62/111 (55%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGTGT DG IA +E+ + +FATHYH +++ R N+ M +E+
Sbjct: 697 RGTGTYDGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMK-VEEWNGK 755
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
+VFL++++PG KS+G +VA+LAG P+ V+ + +++A +L
Sbjct: 756 ----VVFLHEIIPGSTNKSYGIHVAKLAGFPQSVLDRAEDLMSKLKANEDL 802
Score = 91 (37.1 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAV 241
K TP M Q+ +KSQ + +LF+++G FYELF DA+
Sbjct: 6 KITPIMQQYMMLKSQYKEYLLFYRLGDFYELFFDDAI 42
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 183 (69.5 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 52/157 (33%), Positives = 85/157 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEY-MSYI----E 443
RGT T+DG IA TLE F++ + LT+F THY V + P Y M ++ E
Sbjct: 933 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDE 992
Query: 444 DKRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K++ G D++ FLY++ GI +S+G NVA+LA +P +V++ + ++E +
Sbjct: 993 SKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVS 1052
Query: 499 LRQLFIHKFASL-----VKS----GEKVDVEELQKAL 526
LR+ + F L VK +K+++EE+Q +L
Sbjct: 1053 LRRKRLECFTDLWMTHSVKDLHTWADKLEMEEIQTSL 1089
Score = 62 (26.9 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP Q+ +K Q+ D VL + G Y F DA I A EL
Sbjct: 188 TPLELQYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 228
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 152 (58.6 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG IA E+ ++ GC +FATH+ + + P V + + E+ +N
Sbjct: 672 RGTSTQDGVSIAWAISEELIKRGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKN-- 729
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
++F +K+V G+ +S+G VA++AGIP+ V+
Sbjct: 730 ---VIFTHKVVDGVADRSYGIEVAKIAGIPDRVI 760
Score = 88 (36.0 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVI 242
K TP M Q+ IK Q D +L F++G FYE F DA I
Sbjct: 2 KVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKI 39
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 154 (59.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 37/108 (34%), Positives = 60/108 (55%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA +E + C T+FATHYH + + P + + + + K
Sbjct: 744 RGTATFDGLSIAWAAIEHLHESNRCRTLFATHYHELTALSAKLPRM---FNATVRVKEWQ 800
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
G +VFL++++PG +S+G VA+LAG+P V+ +V ++EA+
Sbjct: 801 G--NVVFLHEVLPGSADRSYGIQVAKLAGLPPAVITRAKSVLAKLEAQ 846
Score = 87 (35.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 189 PDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
PD P E + TP M Q+ IK+ + +LF+++G FYELF DA I + L
Sbjct: 12 PDETPAP---QAEAAARVTPMMEQYLEIKAAHQGLLLFYRMGDFYELFFEDAEIASKTL 67
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 180 (68.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 73/270 (27%), Positives = 121/270 (44%)
Query: 282 MSELLKYFENAFDHKEASSAGNII--PKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHF 339
+ E +Y N D E S II P G Y + + I +I +I +Y+ + A
Sbjct: 871 LGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI-TIMAQIGSYVPAEEATI 929
Query: 340 GCTV-IYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPEC-RGTGTNDG 397
G I++ Y + S + + + + K + + E RGT T+DG
Sbjct: 930 GIVDGIFTRMGAADNIY--KGQSTFMEELTDTAE-IIRKATSQSLVILDELGRGTSTHDG 986
Query: 398 CVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEY-MSYI----EDKRNDGI- 450
IA TLE F++ + LT+F THY V + + Y M ++ E K + G
Sbjct: 987 IAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAA 1046
Query: 451 ----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHK 506
D + FLY++ GI +S+G NVA+LA +P +++K + ++E N ++ +
Sbjct: 1047 EQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKY 1106
Query: 507 FASLVKSGEKVDVEELQKALESVKSFESQT 536
FA L + ++LQK E E+QT
Sbjct: 1107 FAKLWTMH---NAQDLQKWTEEFNMEETQT 1133
Score = 61 (26.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP Q+ +K Q+ D VL + G Y F DA I A EL
Sbjct: 230 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 270
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 179 (68.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 48/157 (30%), Positives = 84/157 (53%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARR----LREEPNVAFEYM-SYIE 443
RGT T+DG IA TLE F++ + LT+F THY V L+E N ++ + E
Sbjct: 902 RGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYLQEVGNYHMGFLVNEDE 961
Query: 444 DKRNDGI----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
+K + G D + FLY++ GI +S+G NVA+LA +P +++K + + ++E N+
Sbjct: 962 NKEDPGEEPVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAASKSKELEGLVNM 1021
Query: 500 RQLFIHKFASLVKSGEKVDVEEL--QKALESVKSFES 534
++ + F L + D+++ + +E + F S
Sbjct: 1022 KRKRLKCFTKLWMISDGKDLQKWTDEFEMEEISDFSS 1058
Score = 61 (26.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 186 PKHPDYNPKTLYVPPEFLKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGAD 245
PK + K++Y P E Q+ +K Q D +L + G Y F DA I A
Sbjct: 141 PKPSNKRTKSIYTPLEL---------QYIELKQQQKDAILCVECGYKYRFFGEDAEIAAR 191
Query: 246 EL 247
EL
Sbjct: 192 EL 193
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 333 RTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNV 381
RT+ + + Y E +++QK +L V Y + +A ++ N+
Sbjct: 147 RTKSIYTPLELQYIELKQQQKDAILCVECGYKYRFFGEDAEIAARELNI 195
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 186 (70.5 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 49/147 (33%), Positives = 77/147 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEY-MSYIEDKRN 447
RGT T+DG IA TLE F+ + LT+F THY SV P Y M+++ +K
Sbjct: 439 RGTSTHDGIAIAYATLEHFITDVESLTLFVTHYPSVCELENVYPGKVGNYHMAFLVNKEE 498
Query: 448 ----------DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH 497
+ + + FLY++ G+ +S+G NVA+LA IPE+++K + ++E
Sbjct: 499 SAEQKGSEEEENPEFVTFLYQITKGVTARSYGLNVAKLADIPEEILKKAAHKSKELERLV 558
Query: 498 NLRQLFIHKFASLVKSGEKVDVEELQK 524
N+++ + FA K D +ELQK
Sbjct: 559 NVKRKKLKSFAEAWKIN---DFQELQK 582
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 136 (52.9 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 38/106 (35%), Positives = 54/106 (50%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA TLE C +FATHYH + V E ++ + K +
Sbjct: 713 RGTATYDGLSIAWATLEHLHATNRCRALFATHYHELTALAATLDGV--ENLT-VAVKEWE 769
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
G ++FL+++ G +S+G VA+LAG+P VV V Q+E
Sbjct: 770 G--EVIFLHEVRKGAADRSYGVQVAQLAGLPPSVVARARVVLDQLE 813
Score = 102 (41.0 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGE 260
TP M Q+ IK D +LF+++G FYE+F DAV A+ L + K GE
Sbjct: 5 TPMMAQYLEIKEAYADALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHEGE 58
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 141 (54.7 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT NDG IA +E + + ATHYH + + N+ F + IE+ + +
Sbjct: 698 RGTAINDGLSIALAAIEHIHDVTKSRAICATHYHELPKLSSHFENIRF-FCLRIEEWKGE 756
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVK 484
+VFL++L+PGI +S+G +VA LAG P+ ++
Sbjct: 757 ----VVFLHELIPGISSRSYGIHVAGLAGFPKGALE 788
Score = 95 (38.5 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP + Q+ +K Q +C+L +++G FYELF DAVI + L
Sbjct: 8 TPVLRQYRALKEQYGECLLLYRLGDFYELFFEDAVIASKTL 48
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 148 (57.2 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 390 RGTGTNDGCVIARVTLEKF--LQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRN 447
RGT T DG IA LE L + T+FATHYH L E + + Y+E
Sbjct: 688 RGTSTYDGMSIAWSILEYLSSLSVRPKTIFATHYHE----LTELSRLGGIFNLYLETLEK 743
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
+ D ++FL K+ G KSFG VA++AG+PE +VK + +E++
Sbjct: 744 E--DRVLFLRKVKVGKAKKSFGIYVAKIAGVPEPIVKRAAELLTDLESK 790
Score = 88 (36.0 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMK 253
TP M Q+ IK D +LFF++G FYE+F DA I + L + K
Sbjct: 22 TPMMKQFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTK 68
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 129 (50.5 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 38/108 (35%), Positives = 53/108 (49%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG---CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IA+ +E L T+FATHY + +V + + + K
Sbjct: 701 RGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVE-NFHAMV--KE 757
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
N G +F+Y++V G KSFG +VA+LAG P VV + Q E
Sbjct: 758 NSGQP--IFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803
Score = 108 (43.1 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
K TP M QW K Q DC+L F++G+FYE F DA+I A L
Sbjct: 4 KLTPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNL 46
Score = 42 (19.8 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 312 KEYDEVMDEIKSIEKEIQTYLRTQ 335
+E + DE+ S+E ++QT L T+
Sbjct: 506 QELQQFQDEVFSVEDKLQT-LETK 528
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 183 (69.5 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 49/163 (30%), Positives = 85/163 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEY-MSYI--ED- 444
RGT T+DG IA TLE F++ + LT+F THY V + P Y M ++ ED
Sbjct: 937 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDG 996
Query: 445 -KRNDGI-----DTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHN 498
K++ G D++ FLY++ GI +S+G NVA+LA +P ++++ + ++E N
Sbjct: 997 SKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREILQKAAHKSKELEGLVN 1056
Query: 499 LRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLE 541
LR+ + F L + D+ LE ++ ++ +++
Sbjct: 1057 LRRKRLEYFIDLWTTHSVKDLHTRAAELE-IQEIQTSPHNEMK 1098
Score = 57 (25.1 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADEL 247
TP Q+ +K + D VL + G Y F DA I A EL
Sbjct: 188 TPLELQYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAAREL 228
Score = 39 (18.8 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 7 ESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQS 59
E +K + P + K KK + + E+ S + P K R + +S
Sbjct: 49 EGDSRKRSLGNGEPTNKKAKKVPEE--EGENTSVASHNPEPKKCLRPRIVSKS 99
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 120 (47.3 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 390 RGTGTNDGCVIARVTLEKFL----QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDK 445
RGT T DG IA E +L + T+FATHYH + E V +
Sbjct: 704 RGTSTFDGVSIAWAVAE-YLHDTERCAAKTLFATHYHELT-----ELAVTRNRVKNCNVA 757
Query: 446 RNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
+ D ++FL K+V G S+G VA LAG+P++V++ + +E
Sbjct: 758 VKEWNDQVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 93 (37.8 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAV 241
+ + TP M Q+ IK+ + D +LFF++G FYE+F DAV
Sbjct: 1 MSELTPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAV 39
Score = 65 (27.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 304 IIPKAGVDKE-YDEVMDEIKSIEKEIQTYL-RTQCAHFGCTVIYSEAQKKQKK--YVLEV 359
++ + G+ + Y +DE++SI +E + ++ R + T I S + K Y +EV
Sbjct: 423 VLREGGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYNKVFGYYIEV 482
Query: 360 PSKYASKAKSNHQRVATKKKNVENYVTPECR 390
S ++ R T N E ++TPE +
Sbjct: 483 TKSNLSAIPDDYIRRQTLA-NAERFITPELK 512
Score = 39 (18.8 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 175 PDHILDADRRSPKHPDY 191
P ++DA+ SPK +Y
Sbjct: 111 PGLVIDAESLSPKENNY 127
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 120 (47.3 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 390 RGTGTNDGCVIARVTLEKFL----QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDK 445
RGT T DG IA E +L + T+FATHYH + E V +
Sbjct: 704 RGTSTFDGVSIAWAVAE-YLHDTERCAAKTLFATHYHELT-----ELAVTRNRVKNCNVA 757
Query: 446 RNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
+ D ++FL K+V G S+G VA LAG+P++V++ + +E
Sbjct: 758 VKEWNDQVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 93 (37.8 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAV 241
+ + TP M Q+ IK+ + D +LFF++G FYE+F DAV
Sbjct: 1 MSELTPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAV 39
Score = 65 (27.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 304 IIPKAGVDKE-YDEVMDEIKSIEKEIQTYL-RTQCAHFGCTVIYSEAQKKQKK--YVLEV 359
++ + G+ + Y +DE++SI +E + ++ R + T I S + K Y +EV
Sbjct: 423 VLREGGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYNKVFGYYIEV 482
Query: 360 PSKYASKAKSNHQRVATKKKNVENYVTPECR 390
S ++ R T N E ++TPE +
Sbjct: 483 TKSNLSAIPDDYIRRQTLA-NAERFITPELK 512
Score = 39 (18.8 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 175 PDHILDADRRSPKHPDY 191
P ++DA+ SPK +Y
Sbjct: 111 PGLVIDAESLSPKENNY 127
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 155 (59.6 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 40/103 (38%), Positives = 59/103 (57%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRN 447
RGT T DG IA+ LE +L + C T+FATHY+ + + P + Y IE KR
Sbjct: 699 RGTSTLDGISIAQAVLE-YLHDSVNCKTIFATHYNELCDLESKLPRMKC-YS--IEVKR- 753
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVA 490
D ++ +YK+VPG S+G + A L+GIPE +++ T +A
Sbjct: 754 -WRDEVLLMYKIVPGRGDNSYGIHTAMLSGIPEAIIRRATEIA 795
Score = 77 (32.2 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 208 PCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDA 240
P M ++ ++ Q D V+F++VG FYE+F DA
Sbjct: 7 PAMKRYLEVRCQYPDAVVFYRVGDFYEMFFEDA 39
Score = 40 (19.1 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 313 EYDEVMDEIKSIEKEIQT-YL--RTQCAHFGC--TVIYSEAQKKQKKYVLEVPSKY 363
++D +E++ +Q ++ R+ C C + Y+ A + + LE P +Y
Sbjct: 207 QFDYAANELRGFYNVLQLGFMDARSPCEIVACGALIAYARATQMGELKRLEFPKRY 262
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 95 (38.5 bits), Expect = 4.2e-10, Sum P(6) = 4.2e-10
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
D + I FLY L PG+ +S+G NVA LA IP V++ + ++E
Sbjct: 1057 DEEEEITFLYDLAPGVAHRSYGLNVARLARIPRKVLEVAARKSSELE 1103
Score = 89 (36.4 bits), Expect = 4.2e-10, Sum P(6) = 4.2e-10
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVA 425
RGT T+DG IA LE ++ +GCL +F THY +A
Sbjct: 965 RGTSTHDGRAIAGAVLEYVVRDVGCLMLFVTHYQDLA 1001
Score = 64 (27.6 bits), Expect = 4.2e-10, Sum P(6) = 4.2e-10
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELA 248
K TP Q+ IK ++ D +L +VG + F DA I A EL+
Sbjct: 185 KLTPMELQFLEIKRKHMDTLLIVEVGYKFRFFGEDARIAARELS 228
Score = 61 (26.5 bits), Expect = 4.2e-10, Sum P(6) = 4.2e-10
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 5 SKESPEKK-GDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEP 63
S++ PE + DSE P +K ++ S P+ + D + S+ R + + S P
Sbjct: 51 SRKRPEPQTDDSEDDVPRDAK-RRRSNGPSAATDTEDAVASLKLSSSSRTERYALNSSRP 109
Query: 64 DDMLQDNGSEDEYV 77
QD ++E V
Sbjct: 110 S---QDEQEKEEDV 120
Score = 53 (23.7 bits), Expect = 2.3e-09, Sum P(6) = 2.3e-09
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 9 PEKKGDSESS--TPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDM 66
P+KK S SS TP ++ + S S+ P + + ++ R + Q+D DD+
Sbjct: 8 PDKKQASISSFFTPRNTS-PLVNLSQNASKKPPPAESKSSKSTSSRKRPEPQTDDSEDDV 66
Query: 67 LQD 69
+D
Sbjct: 67 PRD 69
Score = 51 (23.0 bits), Expect = 3.4e-09, Sum P(6) = 3.4e-09
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 5 SKESPEKKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKS 49
SK+ P +S+SS SS+ K+ SEDD P + RR +
Sbjct: 35 SKKPPP--AESKSSKSTSSR-KRPEPQTDDSEDDVPRDAKRRRSN 76
Score = 46 (21.3 bits), Expect = 4.2e-10, Sum P(6) = 4.2e-10
Identities = 13/67 (19%), Positives = 31/67 (46%)
Query: 321 IKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKN 380
I ++E+++ + G V + +Y++EVP+ + ++ +++ KK
Sbjct: 686 IAAVEQDLDEHRSEAAKDLGKKVPVNYVTVAGIEYLIEVPNTDLKRVPASWAKISGTKK- 744
Query: 381 VENYVTP 387
V + TP
Sbjct: 745 VSRFHTP 751
Score = 46 (21.3 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 15 SESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKS 55
S+ PA SK K++ S + E + ++ + AKR +S
Sbjct: 35 SKKPPPAESKSSKSTSSRKRPEPQTDDSEDDVPRDAKRRRS 75
Score = 40 (19.1 bits), Expect = 4.2e-10, Sum P(6) = 4.2e-10
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 ELLKYFENAFDHKEASS 300
E L+ + NA DH E S
Sbjct: 508 ESLEVYRNATDHSEKGS 524
Score = 40 (19.1 bits), Expect = 3.7e-08, Sum P(6) = 3.7e-08
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 7 ESPEKKGDSESSTP---ASSKGKKTSK 30
E E + D E P A KG KT K
Sbjct: 159 EGEEGEDDEEEPAPKTTAKKKGAKTGK 185
Score = 40 (19.1 bits), Expect = 3.7e-08, Sum P(6) = 3.7e-08
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 17 SSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDM 66
SS+ + + S P++ E + R+K + + ++ PD M
Sbjct: 94 SSSSRTERYALNSSRPSQDEQEKEEDVAERKKKEELHRKFVKKLGHPDSM 143
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 163 (62.4 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 42/144 (29%), Positives = 82/144 (56%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-C-LTVFATHYHSVARRLREEPNVAFEYMSYIEDKRN 447
RGTGT+DG I+ ++ F ++ C L +F TH+ + + P + +M Y+E+++
Sbjct: 874 RGTGTHDGIAISYALIKYFSELSDCPLILFTTHFPMLGEI--KSPLIRNYHMDYVEEQKT 931
Query: 448 DGID--TIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIH 505
G D +++FLYKL G+ S+G NVA+LA + +D++ +++ ++ + ++ + +
Sbjct: 932 -GEDWMSVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELR-KESINEDALK 989
Query: 506 KFASL---VKSGEKVDVEELQKAL 526
F+SL +KS ++L K L
Sbjct: 990 LFSSLKRILKSDNITATDKLAKLL 1013
Score = 58 (25.5 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 28/91 (30%), Positives = 37/91 (40%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGESTLL 264
K TP Q +K + D VL +VG Y+ F DAV + L + ES
Sbjct: 131 KLTPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESN-- 188
Query: 265 TQLCNYESQTPSGCFPDMSELLKYFENAFDH 295
Q CN+ Q FPD+ L + E H
Sbjct: 189 PQDCNHR-QFAYCSFPDV-RLNVHLERLVHH 217
Score = 48 (22.0 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 304 IIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKY 363
+I K D E D V+ IK + ++IQ L + +YS + + V+ +PS Y
Sbjct: 354 LIHKQEYDLE-DHVVQAIKVMNEKIQ--LSPSLIRL-VSKLYSHMVEYNNEQVMLIPSIY 409
Query: 364 ASKAKSNH 371
+ A H
Sbjct: 410 SPFASKIH 417
Score = 43 (20.2 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 310 VDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYS-EAQKKQKK 354
+ +E + V ++K EI+ YL+ +F V Y E + Q K
Sbjct: 614 IQRESESVRSQLKEELAEIRKYLKRPYLNFRDEVDYLIEVKNSQIK 659
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 172 (65.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 47/127 (37%), Positives = 71/127 (55%)
Query: 390 RGTGTNDGCVIARVTLEKFLQI--GC-LTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGTGT+DG I+ L F+++ C L +F THY S+ +R P + +MSYIE+KR
Sbjct: 879 RGTGTHDGISISYALLRYFIELHNACPLILFITHYASLGS-IRS-PILGNYHMSYIEEKR 936
Query: 447 -NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV----KFGTTVAFQMEARHNLRQ 501
+ ++VFLYKL G S+G NVA+LA I ++ K T + +ME+ ++
Sbjct: 937 PGENWPSVVFLYKLKEGRAHNSYGLNVAKLADIQTGIINRAYKISTMLKQEMESNSSIAA 996
Query: 502 LFIHKFA 508
+ K A
Sbjct: 997 ICTIKHA 1003
Score = 53 (23.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 212 QWWTIKSQNFDCVLFFKVGKFYELFHMDAVI 242
Q+ +K Q+ D VL +VG Y+ F DAV+
Sbjct: 146 QFKDLKLQHMDKVLAVRVGYKYKFFAEDAVM 176
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 174 (66.3 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 49/133 (36%), Positives = 71/133 (53%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ--IGCLTVFATHYHSVARRLREEPN--VAFEYMSYIEDK 445
RGTGT DG +A L+ ++ L +F THY S+ +E PN V +M Y E K
Sbjct: 883 RGTGTIDGISLAYSILKYLIESEFKPLVLFITHYPSIHVLEQEYPNQLVVNYHMGYQEIK 942
Query: 446 RND-G-IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL- 502
N G I I+FLY L G+ S+G NVA+LAGI D++K V+ ++++ L++
Sbjct: 943 NNTPGEIPEIIFLYNLCRGVVNNSYGLNVAKLAGISHDIIKQAYRVSEKVKSDIELKEYW 1002
Query: 503 -FIHKFASLVKSG 514
F H +K G
Sbjct: 1003 KFAHSLNKALKEG 1015
Score = 50 (22.7 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 204 KKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAV 241
K+ TP Q + Q+ D +L ++G Y++F ++A+
Sbjct: 105 KRLTPLEKQILELTEQHQDKILLIQIGYKYKVFGINAL 142
Score = 45 (20.9 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 11 KKGDSESSTPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDSEPDDMLQD 69
K S +T SK + KS S +P+R KR+ + E + QD
Sbjct: 65 KDSTSTRTTTTKSKDVEKRKSTTSSGSSFSSESKPKRPKEKRLTPLEKQILELTEQHQD 123
Score = 40 (19.1 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 18 STPASSKGKKTSKSPAKSEDDSPVTKRPRRKSAK 51
ST ++ K +SKSP P T P S K
Sbjct: 22 STESTLTEKVSSKSPPLPPPPPPPTASPSLPSEK 55
Score = 39 (18.8 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 319 DEIKSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKK 378
D I+ + I Y + Q +I E + KYV + +Y + ++N + +K
Sbjct: 608 DSIELQYQNIAQY-QQQIEQEQLEIIRKELGNSKLKYVQKDGERYLIEIRNNQRDKLSKI 666
Query: 379 KNVENYV 385
+ ++Y+
Sbjct: 667 LDDKDYI 673
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 170 (64.9 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 41/111 (36%), Positives = 62/111 (55%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVA-FEYMSYIE---- 443
RGT T DG +A E +IGC +FATH+H + + PNV +++IE
Sbjct: 771 RGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLK 830
Query: 444 DKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
++++D D I LYK+ PGI +SFG +VAE+ PE +VK A +++
Sbjct: 831 EQKHDDED-ITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELD 880
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 113 (44.8 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYH---SVARRLREEPNVAFEYMSYIEDK 445
RGT T DG +A ++ +FATHY ++A L+ NV + + + E+K
Sbjct: 705 RGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQAVKNVHLDAVEH-EEK 763
Query: 446 RNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVK 484
I+FL+ L G KS+G VA+LAGIP V++
Sbjct: 764 -------IIFLHALREGPANKSYGLQVAQLAGIPRSVIQ 795
Score = 86 (35.3 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDA 240
+ TP M Q+ IK++ D ++F+++G FYELF+ DA
Sbjct: 16 QHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDA 51
Score = 64 (27.6 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 304 IIPKAGVDKE-YDEVMDEIKSIEKEIQTYL-RTQCAHFGCTVIYSE--AQKKQKKYVLEV 359
+I GV + YD +DE++++ +L + T I + + Y +E+
Sbjct: 426 VIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLEQQERERTKINTVKVGYNRIHGYYIEI 485
Query: 360 PSKYASKAKSNHQRVATKKKNVENYVTPECR 390
A +A + + R T K NVE Y+TPE +
Sbjct: 486 SRAQAKQAPTEYIRRQTLK-NVERYITPELK 515
Score = 38 (18.4 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 300 SAGNIIPKAGV 310
SAG+ IP AGV
Sbjct: 68 SAGHAIPMAGV 78
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 132 (51.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/109 (33%), Positives = 57/109 (52%)
Query: 390 RGTGTNDGCVIARVTLE---KFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG IA +E + + T+FATHYH + + + Y +++
Sbjct: 691 RGTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIK-NYNVSVKEVD 749
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
N ++FL KL G SFG +VA++AG+P+ +VK T+ Q+E+
Sbjct: 750 NK----VIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLES 794
Score = 82 (33.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 210 MGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGES 261
M Q+ +K+++ D V+ F+ G FYE + DA++ ++ L + K + G++
Sbjct: 2 MKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKT 53
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 163 (62.4 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 53/173 (30%), Positives = 80/173 (46%)
Query: 373 RVATKKKNVENYVTPEC-RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLRE 430
R AT K V + E RGT T +GC IA E + C T+FATH+H + +
Sbjct: 735 RTATDKSLV---IIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAET 791
Query: 431 EPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVA 490
V +M+ + D D LY++ G+ KSFG VA LA PE VV+ V
Sbjct: 792 LSTVKNCHMAAVADA-----DDFTLLYQVRSGVMEKSFGIQVARLANFPEHVVQNAQEVY 846
Query: 491 FQMEARHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDL 543
+ E H +Q K +K +E++Q A++ + + + ++EDL
Sbjct: 847 NEFEDEHVDKQ----------KKEDKALLEKIQVAIQQLSTAGNNVDINVEDL 889
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 173 (66.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVA-FEYMSYIEDKRN 447
RGT T DG +A E + IGC +FATH+H + + PNV ++++E+K +
Sbjct: 766 RGTSTYDGFGLAWSISEHIAKNIGCFALFATHFHELTALADDCPNVTNLHVVAHVEEKSH 825
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
D I LYK+ PGI +SFG +VAE+ P +VK A +++
Sbjct: 826 KS-DDITLLYKVEPGISDQSFGIHVAEVVQFPSKIVKMAKRKATELD 871
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 239 DAVIGADELACSYMKESGCTGESTLLTQLCNYESQTPSGCF-P-DMSEL 285
D V+ AD + + G+ST + Q+ GCF P D +E+
Sbjct: 668 DVVLEADSSGFAIITGPNMGGKSTYIRQVGVICLLAQIGCFVPCDAAEI 716
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 149 (57.5 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +IG +FATH+H + + P V +++ + +
Sbjct: 752 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE--- 808
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
+T+ LY++ G+C +SFG +VAELA P V++ A ++E N+
Sbjct: 809 --ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNI 857
Score = 59 (25.8 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 224 VLFFKVGKFYELFHMDAVIGADEL-----ACSYMKESGC-TGESTLLTQLCNYES 272
V F G FY H DA++ A E+ Y+ +G T ES +L+++ N+ES
Sbjct: 34 VRLFDRGDFYTAHHEDALLAAREVFKTQGVIKYLGPAGTKTLESVVLSKM-NFES 87
Score = 43 (20.2 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D S+ + E D + + ++ K D E+ + + +EK++Q+ L + G
Sbjct: 446 DFSKFQEMIETTLDMDQVENHEFLV-KPSFDPNLSELREIMDDLEKKMQSTLISAARDLG 504
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 141 (54.7 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGC-LTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E C +FATH+H + + P V +++ + +D
Sbjct: 680 RGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALT---SD 736
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
DT+ LY++ G+C +SFG +VAELA P+ V++ A ++E
Sbjct: 737 --DTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESAREKALELE 780
Score = 66 (28.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D S+ L+ E D + + ++ KA D E+ +++ +E+ +QT L++ G
Sbjct: 374 DFSKFLEMIETTLDMDKVENHEFLV-KASFDPNLTELREKMNELEESMQTLLKSAAKELG 432
Query: 341 CTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNV 381
EA K K LE S++ +H R+ K++ V
Sbjct: 433 L-----EAGKSIK---LESNSQFG-----HHFRITCKEEKV 460
Score = 40 (19.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 345 YSEAQKKQKKYVLEVPSKYASKAKSNHQRVA 375
Y EAQ K ++ + S YA ++ + +A
Sbjct: 498 YEEAQDAIVKEIINIASGYAEPIQTMNDVIA 528
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 141 (54.7 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGC-LTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E C +FATH+H + + P V +++ + +D
Sbjct: 685 RGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALT---SD 741
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
DT+ LY++ G+C +SFG +VAELA P+ V++ A ++E
Sbjct: 742 --DTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESAREKALELE 785
Score = 66 (28.3 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D S+ L+ E D + + ++ KA D E+ +++ +E+ +QT L++ G
Sbjct: 379 DFSKFLEMIETTLDMDKVENHEFLV-KASFDPNLTELREKMNELEESMQTLLKSAAKELG 437
Query: 341 CTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNV 381
EA K K LE S++ +H R+ K++ V
Sbjct: 438 L-----EAGKSIK---LESNSQFG-----HHFRITCKEEKV 465
Score = 40 (19.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 345 YSEAQKKQKKYVLEVPSKYASKAKSNHQRVA 375
Y EAQ K ++ + S YA ++ + +A
Sbjct: 503 YEEAQDAIVKEIINIASGYAEPIQTMNDVIA 533
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 157 (60.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 41/119 (34%), Positives = 60/119 (50%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVA-FEYMSYI----- 442
RGT T DG +A E + +IGC +FATH+H + + PNV ++I
Sbjct: 742 RGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPNVKNLHVTAHISGTDT 801
Query: 443 -------EDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
ED++ + LYK+ PGIC +SFG +VAEL P+ VV+ A ++E
Sbjct: 802 DTDVITDEDEKAKKKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELE 860
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 149 (57.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +IG +FATH+H + + P V +++ + +
Sbjct: 752 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE--- 808
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
+T+ LY++ G+C +SFG +VAELA P V++ A ++E N+
Sbjct: 809 --ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNI 857
Score = 55 (24.4 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 224 VLFFKVGKFYELFHMDAVIGADEL-----ACSYMKESGC-TGESTLLTQLCNYES 272
V F G FY DA++ A E+ YM +G T ES +L+++ N+ES
Sbjct: 34 VRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMGPAGAKTLESVVLSKM-NFES 87
Score = 43 (20.2 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D S+ + E D + + ++ K D E+ + + +EK++Q+ L + G
Sbjct: 446 DFSKFQEMIETTLDMDQVENHEFLV-KPSFDPNLSELREIMDDLEKKMQSTLVSAARDLG 504
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 156 (60.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 36/108 (33%), Positives = 55/108 (50%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVA-FEYMSYIEDKRN 447
RGT T DG +A E + QIGC +FATHYH + + E V +Y+ D +
Sbjct: 804 RGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMTKLSEEITTVKNLHVTAYVGDSES 863
Query: 448 DGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
+ LY + G +SFG +VA+LA P +++ + A ++EA
Sbjct: 864 KDV---ALLYNVCEGASDRSFGIHVAKLAHFPPKIIEMASNKAAELEA 908
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 129 (50.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 36/111 (32%), Positives = 52/111 (46%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMS-------- 440
RGT DG +A +L L + C +FATH+H+V L+E+ V + S
Sbjct: 1066 RGTTPEDGTAVAFASLHHLLTVNKCRGLFATHFHAVGDMLKEQGLVVEDGASSAGASWGV 1125
Query: 441 --YIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTV 489
Y D D V+++KL G+ +S VA LAG+PE +K V
Sbjct: 1126 AMYCTDVEEDESGGFVYVHKLRKGMNRQSHALKVARLAGLPEPAIKIAQQV 1176
Score = 64 (27.6 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 219 QNFD-CVLFFKVGKFYELF--HMDAVIGADELACSYMKESG 256
Q FD CVL +VG FYE++ H + V L S K SG
Sbjct: 274 QKFDNCVLLTRVGGFYEMYFEHAEEVGPLLNLKVSQKKTSG 314
Score = 57 (25.1 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 12 KGDSESSTPASSKG------KKTSKSPAKSEDDSPVTKRPRRKSAK-RVKSAIQSDSEPD 64
K D S+TP + K+ ++ A E + P T+R R K+ R+K Q PD
Sbjct: 188 KLDDSSTTPVAMLDEALLPVKEATEEAADVEQNEPSTQRKRDKTRTVRLKEIPQGALLPD 247
Query: 65 DMLQDNGSEDE 75
+ ED+
Sbjct: 248 ESFPPRQQEDQ 258
Score = 38 (18.4 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 3 LDSKESPEKKGDSESSTPASSKGKKTSKS 31
L KE+ E+ D E + P++ + + +++
Sbjct: 205 LPVKEATEEAADVEQNEPSTQRKRDKTRT 233
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 149 (57.5 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +IG +FATH+H + + P V +++ + +
Sbjct: 268 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE--- 324
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
+T+ LY++ G+C +SFG +VAELA P V++ A ++E N+
Sbjct: 325 --ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNI 373
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 157 (60.3 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 44/148 (29%), Positives = 68/148 (45%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +Q+ T+FATH+H + + V+ + +
Sbjct: 749 RGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELTALAQANSEVSGNTVGVANFHVSA 808
Query: 449 GIDT----IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFI 504
IDT + LYK+ PG C +SFG +VAE A PE VV A ++E + + I
Sbjct: 809 HIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELED-FSPSSMII 867
Query: 505 HKFASLVKSGEKVDVEELQKALESVKSF 532
+ S + + D +E+ + E F
Sbjct: 868 NNEESGKRKSREDDPDEVSRGAERAHKF 895
Score = 40 (19.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 313 EYDEVMDEIKSIEKEI 328
+Y V+D+ +S +KE+
Sbjct: 559 QYQSVVDDYRSCQKEL 574
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 149 (57.5 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +IG +FATH+H + + P V +++ + +
Sbjct: 402 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE--- 458
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
+T+ LY++ G+C +SFG +VAELA P V++ A ++E N+
Sbjct: 459 --ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNI 507
Score = 43 (20.2 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D S+ + E D + + ++ K D E+ + + +EK++Q+ L + G
Sbjct: 96 DFSKFQEMIETTLDMDQVENHEFLV-KPSFDPNLSELREIMDDLEKKMQSTLISAARDLG 154
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 148 (57.2 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 38/125 (30%), Positives = 65/125 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGC--LTVFATHYHSVARR--LREEPNVAFEYMSYIE-D 444
+GT T DG + T+ F C + +TH + L + ++ MS + D
Sbjct: 654 KGTLTEDGIGLLGGTISHFTDYDCPPKVLLSTHLTQIFTESYLPQSEHIKCYTMSVLNPD 713
Query: 445 KRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFI 504
++ D D ++FLY+LVPG SFG + A+LAG+P +VV+ TV + ++ +R++
Sbjct: 714 EQTDNED-VIFLYRLVPGQALLSFGLHCAQLAGVPSEVVQRAVTVLGDIHSKRPIRRMVW 772
Query: 505 HKFAS 509
K A+
Sbjct: 773 EKLAA 777
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 146 (56.5 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +IG +FATH+H + + P V +++ + +
Sbjct: 752 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE--- 808
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
+T+ LY++ G+C +SFG +VAELA P+ V++ A ++E
Sbjct: 809 --ETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELE 852
Score = 48 (22.0 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 224 VLFFKVGKFYELFHMDAVIGADEL-----ACSYMKESGCTG-ESTLLTQLCNYES 272
V F G FY DA++ A E+ YM +G +S +L+++ N+ES
Sbjct: 34 VRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKM-NFES 87
Score = 44 (20.5 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D S+ + E D + + ++ K D E+ + + +EK++Q+ L + G
Sbjct: 446 DFSKFQEMIETTLDMDQVENHEFLV-KPSFDPNLSELREIMNDLEKKMQSTLISAARDLG 504
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 146 (56.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E +IG +FATH+H + + P V +++ + +
Sbjct: 752 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE--- 808
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
+T+ LY++ G+C +SFG +VAELA P+ V++ A ++E
Sbjct: 809 --ETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELE 852
Score = 48 (22.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 224 VLFFKVGKFYELFHMDAVIGADEL-----ACSYMKESGCTG-ESTLLTQLCNYES 272
V F G FY DA++ A E+ YM +G +S +L+++ N+ES
Sbjct: 34 VRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKM-NFES 87
Score = 44 (20.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
D S+ + E D + + ++ K D E+ + + +EK++Q+ L + G
Sbjct: 446 DFSKFQEMIETTLDMDQVENHEFLV-KPSFDPNLSELREIMNDLEKKMQSTLISAARDLG 504
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 143 (55.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT T DG +A E+ ++ C VFATH+H +++ L E+ + E ++ + ++ N+
Sbjct: 719 RGTSTYDGFGLAWAISEELIKRKCFAVFATHFHELSQ-LSEKYD-GVENLNLMAEQTNED 776
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
I T++ YK+ PGI SFG +VAE +PE +V
Sbjct: 777 I-TLI--YKVGPGISNTSFGISVAEKLHMPEKIV 807
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 32/129 (24%), Positives = 54/129 (41%)
Query: 270 YESQT----PSGCFPDMSELLKYFENAFDHKEASSAG----NIIPKAGVDKEYDEVMDEI 321
Y S+T SG ++ L + F+ FD ++ SS+ + K GV D ++
Sbjct: 99 YHSKTFQLISSGTAGNLDSLSEEFDIDFDFRDGSSSSIAAIKLGNKVGVCVIADSIVHLS 158
Query: 322 KSIEKEIQTYLRTQCAHFGCTVIYSEAQKKQKKY--VLE-----VPSKYASKAKSNHQRV 374
+ + E+ + L + G + A KK+ +LE V S S K N Q +
Sbjct: 159 EFEDNELYSNLESLLIQLGVKEVVIPANVDNKKFFQMLEKLNDLVVSAAKSFPKDNEQDI 218
Query: 375 ATKKKNVEN 383
+ K + EN
Sbjct: 219 S-KLLDTEN 226
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 148 (57.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 40/126 (31%), Positives = 68/126 (53%)
Query: 379 KNVEN---YVTPEC-RGTGTNDGCVIARVTLEKFL--QIGCLTVFATHYHSVARRLREEP 432
KN +N + E RGT T +G I+ ++ K++ I C +FATH+H ++ +
Sbjct: 410 KNADNNSLIIVDELGRGTSTYEGLGISW-SIGKYILDNIKCFCLFATHFHEMSNIAYQCE 468
Query: 433 NVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQ 492
V ++ I D++N I FLY++ G KS+G NVAE+A +P+DV++ +
Sbjct: 469 GVINRHIETIIDQKNK---KICFLYEIKDGASNKSYGVNVAEIAKLPKDVIQKAYEKVEE 525
Query: 493 MEARHN 498
+E+ N
Sbjct: 526 LESAEN 531
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 283 SELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTY 331
S+ L E D KE + D E +++ +E ++ K+I+ +
Sbjct: 110 SKFLDMIEMTIDLKEIEENKVYLISKHFDSELEQIYNEKSALMKKIKNH 158
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 144 (55.7 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A + +IG +FATH+H + + P V +++ + +
Sbjct: 752 RGTSTYDGFGLAWAISDYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE--- 808
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNL 499
+T+ LY++ G+C +SFG +VAELA P V+ A ++E N+
Sbjct: 809 --ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIACAKQKALELEEFQNI 857
Score = 49 (22.3 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 224 VLFFKVGKFYELFHMDAVIGADEL-----ACSYMKESGC-TGESTLLTQLCNYES 272
V F G FY DA++ A E+ YM +G T +S +L+++ N+ES
Sbjct: 34 VRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGSKTLQSVVLSKM-NFES 87
Score = 43 (20.2 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYL 332
D S+ + E D + + ++ K D E+ + + +EK++Q+ L
Sbjct: 446 DFSKFQEMIETTLDMDQVENHEFLV-KPSFDPNLSELREVMDGLEKKMQSTL 496
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 143 (55.4 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 34/106 (32%), Positives = 55/106 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E IG +FATH+H + + P V +++ + +
Sbjct: 752 RGTSTYDGFGLAWAISEYIATNIGAFCMFATHFHELTALASQIPTVNNLHVTALTTE--- 808
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
+T+ LY++ G+C +SFG +VAELA P V++ A ++E
Sbjct: 809 --ETLTMLYQVKTGVCDQSFGIHVAELANFPRHVIECAKQKALELE 852
Score = 47 (21.6 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 227 FKVGKFYELFHMDAVIGADEL-----ACSYMKESGCTGESTLLTQLCNYES 272
F G FY DA++ A E+ YM +G T++ N+ES
Sbjct: 37 FDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKTLQTVVLSKMNFES 87
Score = 42 (19.8 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 281 DMSELLKYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYL 332
D S+ + E D + + ++ K D E+ + + +EK++Q+ L
Sbjct: 446 DFSKFQEKIETTLDMDQVENHEFLV-KPSFDPNLSELREVMDGLEKKMQSTL 496
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 143 (55.4 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 49/211 (23%), Positives = 86/211 (40%)
Query: 337 AHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPE--CRGTGT 394
A C + K Y V K + + + + R + + V + CRGT T
Sbjct: 796 AESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTET 855
Query: 395 NDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDTIV 454
G IA +E GCL + +TH H + N+ ++ M E+ T
Sbjct: 856 AKGTCIAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNITYKAMG-AENVEGQTKPT-- 912
Query: 455 FLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFASLVKSG 514
+KL G+C +S F A+ G+PE V++ + + A+ ++ K ++ S
Sbjct: 913 --WKLTDGVCRESLAFETAKREGVPESVIQRAEALYLSVYAKDASAEVV--KPDQIITSS 968
Query: 515 EKVDVEELQKALESVKSFESQTKKDLEDLPG 545
D +++QK + S +S E K + + G
Sbjct: 969 NN-D-QQIQKPVSSERSLEKDLAKAIVKICG 997
Score = 48 (22.0 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 224 VLFFKVGKFYELFHMDAVI 242
VL +VG+FYE +DA I
Sbjct: 139 VLLCRVGEFYEAIGIDACI 157
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 126 (49.4 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 36/95 (37%), Positives = 50/95 (52%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT +DG IA L+ I T+FATH H + + NV Y + + R+D
Sbjct: 830 RGTTASDGIAIAYGCLKYLSTINHSRTLFATHAHQLTNLTKSFKNVEC-YCTNLSIDRDD 888
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
T F YKL G+ +S G VAE+AGIP++V+
Sbjct: 889 --HTFSFDYKLKKGVNYQSHGLKVAEMAGIPKNVL 921
Score = 64 (27.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 183 RRSPKHPDYNPKTLYV----PP-EFLK---KQT-PCMGQWWTIKSQNF-DCVLFFKVGKF 232
R S K P K + PP +F++ K T P + + + + + F DCVL KVG F
Sbjct: 27 RNSSKSPKVGQKPILQGALGPPLDFIRPKEKVTLPPLLKEVSFQQKKFADCVLLTKVGNF 86
Query: 233 YELFHMDA 240
YE++ A
Sbjct: 87 YEMYFEQA 94
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 140 (54.3 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 40/125 (32%), Positives = 61/125 (48%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG--CLTVFATHYHSVARR--LREEPNVAFEYMSYIE-D 444
+GT T DG + T+ F V TH + L + F MS + D
Sbjct: 651 KGTLTEDGIGLLGGTISHFATCAEPPRVVVCTHLTELLNESCLPVSEKIKFYTMSVLRPD 710
Query: 445 KRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFI 504
+ ++ IVFLY+L+PG S+G + A LAG+PE+VVK V E+ +N+ +L +
Sbjct: 711 TESANMEEIVFLYRLIPGQTLLSYGLHCALLAGVPEEVVKRAAIVLDAFESNNNVDKLSL 770
Query: 505 HKFAS 509
K +S
Sbjct: 771 DKISS 775
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 147 (56.8 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA + L +I CL++FATH+H + + L E+P M ++ + N+
Sbjct: 722 RGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGK-LAEQPGAVALQMG-VQIENNE 779
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
I LYK+ G+ SFG VA++ GI E+V+
Sbjct: 780 ----IHMLYKVFEGVAQCSFGLQVAKMVGIDENVI 810
Score = 43 (20.2 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 216 IKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGESTLLT 265
+KS++ + + F G+++ ++ DA +A + K C TL T
Sbjct: 17 LKSKSPNTIAIFSRGEYFSVYGDDATF----VATNIFKSDVCVKTFTLST 62
Score = 38 (18.4 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 16/97 (16%), Positives = 42/97 (43%)
Query: 287 KYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYS 346
++F+ FD+++ + I + E E+ ++++ +E+ + + A F C +
Sbjct: 430 EFFD--FDYEKENK--EIRVRVDFVPEIQEISEKLEQMERVAEKLRKKYSAKFECDNLKL 485
Query: 347 EAQKKQKKYV-LEVPSKYASKAKSNHQRVATKKKNVE 382
+ + Y + + + + + K H TK V+
Sbjct: 486 DKNSQYGFYFRVTLKEEKSIRKKDVHILETTKGSGVK 522
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 147 (56.8 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG IA + L +I CL++FATH+H + + L E+P M ++ + N+
Sbjct: 722 RGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGK-LAEQPGAVALQMG-VQIENNE 779
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVV 483
I LYK+ G+ SFG VA++ GI E+V+
Sbjct: 780 ----IHMLYKVFEGVAQCSFGLQVAKMVGIDENVI 810
Score = 43 (20.2 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 216 IKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGESTLLT 265
+KS++ + + F G+++ ++ DA +A + K C TL T
Sbjct: 17 LKSKSPNTIAIFSRGEYFSVYGDDATF----VATNIFKSDVCVKTFTLST 62
Score = 38 (18.4 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 16/97 (16%), Positives = 42/97 (43%)
Query: 287 KYFENAFDHKEASSAGNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTVIYS 346
++F+ FD+++ + I + E E+ ++++ +E+ + + A F C +
Sbjct: 430 EFFD--FDYEKENK--EIRVRVDFVPEIQEISEKLEQMERVAEKLRKKYSAKFECDNLKL 485
Query: 347 EAQKKQKKYV-LEVPSKYASKAKSNHQRVATKKKNVE 382
+ + Y + + + + + K H TK V+
Sbjct: 486 DKNSQYGFYFRVTLKEEKSIRKKDVHILETTKGSGVK 522
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 137 (53.3 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 49/169 (28%), Positives = 78/169 (46%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPN-------VAF--EYM 439
RGT T DG +A E + +I C +FATH+H + P VAF +
Sbjct: 748 RGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNLHVVAFIGDGT 807
Query: 440 SYIEDKRNDGIDT---IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
+ E+ + T + LY++ PGIC +SFG +VAEL PE VV A ++E
Sbjct: 808 TANEEDEKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAEELEDF 867
Query: 497 HNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDLPG 545
+ A++ +K EE+++ +K+ + K +E+ PG
Sbjct: 868 TSADSAGNAASATI----DKYSQEEVEEGSALLKALLVKWKSAIEE-PG 911
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 136 (52.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 34/106 (32%), Positives = 55/106 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T DG +A E ++ +FATH+H + ++ P V +++ + D
Sbjct: 752 RGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLHVTALT---TD 808
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQME 494
T+ LYK+ G+C +SFG +VAELA P+ V+ A ++E
Sbjct: 809 S--TLTMLYKVKKGVCDQSFGIHVAELASFPKHVIANAREKALELE 852
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 137 (53.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 49/169 (28%), Positives = 78/169 (46%)
Query: 390 RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLREEPN-------VAF--EYM 439
RGT T DG +A E + +I C +FATH+H + P VAF +
Sbjct: 748 RGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNLHVVAFIGDGT 807
Query: 440 SYIEDKRNDGIDT---IVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
+ E+ + T + LY++ PGIC +SFG +VAEL PE VV A ++E
Sbjct: 808 TANEEDEKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAEELEDF 867
Query: 497 HNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDLPG 545
+ A++ +K EE+++ +K+ + K +E+ PG
Sbjct: 868 TSADSAGNAASATI----DKYSQEEVEEGSALLKALLVKWKSAIEE-PG 911
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 138 (53.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 40/137 (29%), Positives = 69/137 (50%)
Query: 390 RGTGTNDGCVIARVTLEKFLQ-IGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT T +G I+ L I CL +FATH+H ++ E+ + A +++ K ++
Sbjct: 678 RGTSTYEGFGISWSVANYLLNNIKCLCLFATHFHEISNL--EDEHAAVSN-NHVSAKIDE 734
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFA 508
I FLY++ G KS+G +VA++A +P+ V+ + ++E+ N H F
Sbjct: 735 AKKKISFLYEIKKGFADKSYGVHVAQIAKLPQKVIDKSFEKSKELESIENK-----HYFK 789
Query: 509 SLVKSGEKVDVEELQKA 525
+ +KS + E KA
Sbjct: 790 NKLKSNNDNNSIEYDKA 806
Score = 42 (19.8 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 18/94 (19%), Positives = 38/94 (40%)
Query: 282 MSELLKYFENAFDHKEASSAGNIIPKA-GVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG 340
+ +L K ++ H +S ++ KA V Y E +++ I +I +
Sbjct: 481 LRDLCKQYQYVL-HSYNTSQEHLANKAIEVASSYWEPFNKLSKIISQIDIFCSFAYVISQ 539
Query: 341 CTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRV 374
C Y +Q VLE+ + ++N+ ++
Sbjct: 540 CISTYVRPIVEQNGKVLEIKNSRHPLVEANYLQI 573
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 129 (50.5 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 33/99 (33%), Positives = 48/99 (48%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDK--- 445
RGT +G IA TL LQ+ C T+FATH+ +L N+ + + Y +
Sbjct: 816 RGTSGKEGLAIAYATLLSLLQVNKCRTLFATHFGKELEQLLVANNIDQKNIRYFRTRVLE 875
Query: 446 RNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVK 484
D V + L PGI +S +VA +AG PE+ +K
Sbjct: 876 NGDNEKGFVIDHTLEPGISERSHALDVARMAGFPENALK 914
Score = 52 (23.4 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 207 TPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDA 240
+P + + N CV +VG FYEL+ A
Sbjct: 50 SPLLASMKRLIDSNPGCVSLIQVGSFYELYFEQA 83
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 130 (50.8 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 66/264 (25%), Positives = 102/264 (38%)
Query: 288 YFENAFDHKEASSAGNII--PKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFG-CTVI 344
+ EN D + II P G Y ++ + I +I ++ AH C I
Sbjct: 348 FIENDIDIDRKETRFQIITGPNMGGKSTYLRMIG-LCVIMAQIGMFIPCSEAHISICDKI 406
Query: 345 YSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECRGTGTNDGCVIARVT 404
++E S + S+ K + + KN + RGT T DG IA
Sbjct: 407 MCRIGAGDN--IVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWAI 464
Query: 405 LEKF-LQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDGIDT-IVFLYKLVPG 462
E + IGC VFATH+H + E V ++E D ID +V YK+ G
Sbjct: 465 SEYLAIDIGCYCVFATHFHEITGL---EKRVTGVINKHVEA---DIIDKQLVLKYKINNG 518
Query: 463 ICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARH--NLR--QLFIHKFASLVKSGEKVD 518
+S VAE A P +VV+ A +++ + R +LF +K L ++
Sbjct: 519 STDQSLAIYVAEWADFPHEVVESAKRKAKELDLDQPDSKRKIELFTNKIPLLDDEIPQIT 578
Query: 519 VEELQKALESVKSFESQTKKDLED 542
E++ + F K D
Sbjct: 579 SEDILNGKSIISQFIHDYKSTPSD 602
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 129 (50.5 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEP--NVAFEYMSYIEDKR 446
RGT +G IA TL+ L+ C T+FATH+ +++ + E + + +
Sbjct: 854 RGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQELKQIIDNKCSKGMSEKVKFYQSGI 913
Query: 447 ND-GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVK 484
D G + + +KL PGIC KS VAELAG P + +K
Sbjct: 914 TDLGGNNFCYNHKLKPGICTKSDAIRVAELAGFPMEALK 952
Score = 50 (22.7 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 222 DCVLFFKVGKFYELFHMDAVIGADELACS 250
D V+ ++G FYEL+ A+ A EL S
Sbjct: 95 DHVVLTQMGSFYELYFEQAIRYAPELNIS 123
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 131 (51.2 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 52/172 (30%), Positives = 82/172 (47%)
Query: 373 RVATKKKNVENYVTPEC-RGTGTNDGCVIARVTLEKFL-QIGCLTVFATHYHSVARRLRE 430
+VATK + + E RGT T DG +A E QIG +FATH+H +
Sbjct: 775 KVATKNSLI---IIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDL 831
Query: 431 EPNVAFEYMSYIEDKRNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVA 490
P V ++S +N+ T LYK+ G C +SFG +VA LA P V++ A
Sbjct: 832 LPMVKNLHVS--ASTQNN---TFTLLYKVEQGPCDQSFGIHVAILANFPSQVIENAKQKA 886
Query: 491 FQMEA--RHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDL 540
++E+ + L+Q +KF K + +++K+L V S ++ D+
Sbjct: 887 KELESFESNTLKQNH-NKFLEEFKE-INFNSNDVEKSLSLVNSLLNKYSIDI 936
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 131 (51.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 35/114 (30%), Positives = 52/114 (45%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRNDG 449
RGT DG IA E IGC T+F THY + PN+ + +D + G
Sbjct: 879 RGTSNMDGSSIAWSISEHLSMIGCYTLFVTHYQQLLNLATFYPNIRVYHFQVSKDD-SSG 937
Query: 450 IDTIVFLYKLVPGICP-KSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQL 502
+ + Y G+ S+G AELAGI V++ T+ +E++ N Q+
Sbjct: 938 LK---YNYLFSEGVSSIDSYGVETAELAGIDSKVIQSAKTIRNLLESKSNNNQI 988
>UNIPROTKB|B1ALG5 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR001487 GO:GO:0008285 GO:GO:0071564
GO:GO:0071565 Gene3D:1.20.920.10 SUPFAM:SSF47370 ChiTaRS:SMARCA2
EMBL:AL359076 EMBL:AL138755 UniGene:Hs.298990 HGNC:HGNC:11098
GO:GO:0035887 IPI:IPI00647028 SMR:B1ALG5 Ensembl:ENST00000382182
HOGENOM:HOG000049058 Uniprot:B1ALG5
Length = 119
Score = 102 (41.0 bits), Expect = 0.00014, P = 0.00014
Identities = 30/76 (39%), Positives = 38/76 (50%)
Query: 4 DSKESPEKKGDSESSTPASS-KGK-KTSKSPAKSEDDSPVTKRPRRKSAKRVKSAIQSDS 61
+S E E++ + ES + A S K K K +K K D KRP R AK V S SD
Sbjct: 44 ESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDE 103
Query: 62 EPDDMLQDNGS--EDE 75
E D+ Q GS +DE
Sbjct: 104 EQDEREQSEGSGTDDE 119
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 129 (50.5 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 40/159 (25%), Positives = 67/159 (42%)
Query: 389 CRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
CRGT T G IA +E+ +GC+ + +TH H + N F+ M +
Sbjct: 847 CRGTETAKGTCIAGSIIERLDNVGCIGIISTHLHGIFDLPLSLHNTDFKAMG------TE 900
Query: 449 GIDTIVF-LYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKF 507
ID + +KL+ GIC +S F A G+P+ +++ + M +H
Sbjct: 901 IIDRCIQPTWKLMDGICRESLAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAVHHE 960
Query: 508 ASLVKSGEKVDVEE---LQKALESVKSFESQTKKDLEDL 543
S+ S VE+ L+ LE +K++E +
Sbjct: 961 ISIANSTVNSLVEKPNYLRNGLELQSGSFGLLRKEIESV 999
Score = 44 (20.5 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 224 VLFFKVGKFYELFHMDAVI 242
VL +VG FYE DA I
Sbjct: 139 VLLCRVGDFYEAVGFDACI 157
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 123 (48.4 bits), Expect = 0.00047, P = 0.00047
Identities = 33/105 (31%), Positives = 57/105 (54%)
Query: 390 RGTGTNDGCVIARVTLEKFLQIG--CLTVF-ATHYHSVARRLREEPNVAF-EYMSYIEDK 445
+GT T DG + L+ ++ G C VF +T++HS+ + L P+ EY++ +
Sbjct: 632 KGTNTLDGLALLAAVLKYWINQGTQCPQVFVSTNFHSLMQ-LELLPDTPLLEYLAM--ET 688
Query: 446 RNDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVA 490
DG D +VF Y++ G+ S N+A LAG+P +++ G V+
Sbjct: 689 HQDG-DELVFFYQIKQGVSTVSHAANIAALAGMPAKIIERGVEVS 732
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 577 533 0.00093 119 3 11 23 0.47 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 112
No. of states in DFA: 621 (66 KB)
Total size of DFA: 323 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.51u 0.13s 59.64t Elapsed: 00:00:04
Total cpu time: 59.54u 0.13s 59.67t Elapsed: 00:00:04
Start: Thu Aug 15 16:04:40 2013 End: Thu Aug 15 16:04:44 2013
WARNINGS ISSUED: 1