RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13263
(577 letters)
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 234
Score = 75.6 bits (185), Expect = 4e-16
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 388 ECRGTGTNDGCVIARVTLEKFLQIG-CLTVFATHYHSVARRLREEPNVAFEYMSYIEDKR 446
RGT T DG +A E LT+FATHY + + + VA ++ +E
Sbjct: 129 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH-- 186
Query: 447 NDGIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEA 495
DTI F++ + G KS+G VA LAG+P++V+K ++E+
Sbjct: 187 ---GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 232
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 68.8 bits (168), Expect = 7e-15
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 203 LKKQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESGCTGE 260
TP M Q+ +K+Q+ + +LF+++G FY LF+ DA + L S K GE
Sbjct: 6 FDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGE 63
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 224
Score = 70.2 bits (171), Expect = 3e-14
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 389 CRGTGTNDGCVIARVTLEKFLQIGCLTVFATHYHSVARRLREEPNVAFEYMSYIEDKRND 448
RGT + DG IA E + T+FATHY + P + +++ E+
Sbjct: 124 GRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL--GLPRLKNLHVAAREE---- 177
Query: 449 GIDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTTVAFQMEAR 496
+VF ++++PG KS+G VA +AG+P++VV + M AR
Sbjct: 178 -AGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAAR 224
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I
{Thermus aquaticus [TaxId: 271]}
Length = 120
Score = 63.1 bits (153), Expect = 9e-13
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 205 KQTPCMGQWWTIKSQNFDCVLFFKVGKFYELFHMDAVIGADELACSYMKESG 256
P + Q+ ++ Q D +L F+VG FYE F DA A L ++
Sbjct: 12 PLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTS 63
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III
{Thermus aquaticus [TaxId: 271]}
Length = 275
Score = 44.5 bits (104), Expect = 2e-05
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 5/117 (4%)
Query: 276 SGCFPDMSELLKYFENAFDHKEASSA--GNIIPKAGVDKEYDEVMDEIKSIEKEIQTYLR 333
PD+S L + E A G +I + G D + D + +
Sbjct: 103 EVGLPDLSPLKEELEAALVEDPPLKVSEGGLI-REGYDPDLDALRAAHREGVAYFLELEE 161
Query: 334 TQCAHFGCTVIYSEAQKKQKKYVLEVPSKYASKAKSNHQRVATKKKNVENYVTPECR 390
+ G + Y LEV Y + ++ V T K+ + Y PE +
Sbjct: 162 RERERTGIPTLKVGYNAVFGYY-LEVTRPYYERVPKEYRPVQT-LKDRQRYTLPEMK 216
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 28.2 bits (62), Expect = 2.4
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 12/130 (9%)
Query: 450 IDTIVFLYKLVPGICPKSFGFNVAELAGIPEDVVKFGTT--VAFQMEARHNLRQLFIHKF 507
++ + G ++ LAG P +V +EA +
Sbjct: 46 VEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGE 105
Query: 508 ASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDLPGGVAGAGTEWWPSPSNDPCSASP 567
+ ES+ K P G +P +
Sbjct: 106 GKVYIGSGV----------ESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQAL 155
Query: 568 PCEETMPPVA 577
E+M A
Sbjct: 156 YGTESMGETA 165
>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId:
9913]}
Length = 76
Score = 26.4 bits (58), Expect = 2.4
Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 493 MEARHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDL 543
M++ ++ F FA+ ++ EEL+ ++++ + L+++
Sbjct: 1 MKSPEEIKGAF-EVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEM 50
>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (61), Expect = 2.5
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 491 FQMEARHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDL 543
F + + L F A + G ++D +ELQ+ L +LE
Sbjct: 1 FPGQTQDPLYGYF-AAVAG--QDG-QIDADELQRCLTQSGIAGGYKPFNLETC 49
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
Thermophilus [TaxId: 271]}
Length = 387
Score = 27.7 bits (61), Expect = 4.7
Identities = 29/174 (16%), Positives = 51/174 (29%), Gaps = 20/174 (11%)
Query: 304 IIPKAGVDKEYDEVMDEIKSIEKEIQTYLRTQCAHFGCTV-IYSEAQKKQKKYVLEVPSK 362
+IP+ +E D+++ K E T T ++S+ K + P
Sbjct: 57 LIPRGTPPQERDQIVRRFKKALDE------TGLKVPMVTANLFSDPAFKDGAFTSPDPWV 110
Query: 363 YASKAKSNHQRV-ATKKKNVENYVTPECRGTGTNDGCVIARVTLEKFLQIGCLTVFATHY 421
A + + + + + E YV R + AR + L A +
Sbjct: 111 RAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWV--REALNFMAAYA 168
Query: 422 HSVARRLREEPNVAFEYMSYIEDKR---NDGIDTIVFLYKLVPGICPKSFGFNV 472
R A E + F++ L P+ FG N
Sbjct: 169 EDQGYGYR----FALEPKPNEPRGDIYFATVGSMLAFIHTL---DRPERFGLNP 215
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 385
Score = 27.0 bits (60), Expect = 6.6
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 468 FGFNVAELAGIPEDVVKFGTTVAFQMEARHNLRQLFIHKFASLVKSGEKVDVEELQKALE 527
+ N A GI +V FG + ARH+ R F+ + A+ E+++ L+ A+
Sbjct: 278 YTINPALTHGIAHEVGMFGALGS----ARHHCRLTFLSQAAAANGVAERLN---LRSAIA 330
Query: 528 SVKSFESQTKKDL 540
VK + K D+
Sbjct: 331 VVKGCRTVQKADM 343
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent
DNA ligase {Thermus filiformis [TaxId: 276]}
Length = 314
Score = 26.8 bits (58), Expect = 7.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 311 DKEYDEVMDEIKSIEKE 327
D EYD ++ E+K +E+
Sbjct: 34 DAEYDRLLRELKELEER 50
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 26.5 bits (57), Expect = 9.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 311 DKEYDEVMDEIKSIEKE 327
D YD + E+ IE E
Sbjct: 35 DYVYDRLYKELVDIETE 51
>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId:
9823]}
Length = 78
Score = 24.8 bits (54), Expect = 9.9
Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 494 EARHNLRQLFIHKFASLVKSGEKVDVEELQKALESVKSFESQTKKDLEDL 543
++ L+ +F K+A+ ++ EEL++ +++ + + L+DL
Sbjct: 4 KSPAELKSIF-EKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDL 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.375
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,115,564
Number of extensions: 99649
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 20
Length of query: 577
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 487
Effective length of database: 1,171,896
Effective search space: 570713352
Effective search space used: 570713352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.2 bits)