Query psy13264
Match_columns 112
No_of_seqs 106 out of 220
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 00:19:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03045 DAN: DAN domain; Int 99.8 1.7E-19 3.7E-24 128.5 9.2 77 28-104 23-102 (121)
2 smart00041 CT C-terminal cysti 99.8 1.5E-19 3.3E-24 120.4 7.2 71 38-111 2-72 (82)
3 PF00007 Cys_knot: Cystine-kno 99.4 8.3E-14 1.8E-18 96.2 3.1 78 34-112 3-81 (105)
4 PF05463 Sclerostin: Sclerosti 97.1 0.0013 2.7E-08 50.9 5.9 81 31-111 64-150 (198)
5 smart00068 GHB Glycoprotein ho 92.4 1.2 2.5E-05 31.6 7.6 74 33-109 3-79 (107)
6 cd00069 GHB Glycoprotein hormo 92.3 0.83 1.8E-05 32.0 6.7 72 35-109 1-75 (102)
7 PF00019 TGF_beta: Transformin 71.7 2.7 5.9E-05 28.3 1.7 52 51-102 25-88 (105)
8 smart00204 TGFB Transforming g 48.3 28 0.00061 23.6 3.4 53 51-103 22-86 (102)
9 PF10956 DUF2756: Protein of u 44.4 9.8 0.00021 26.8 0.6 18 8-25 4-21 (104)
10 PF02495 7kD_coat: 7kD viral c 39.5 30 0.00064 21.3 2.2 20 31-50 23-42 (59)
11 PHA02661 vascular endothelial 38.6 56 0.0012 24.2 3.9 56 27-96 40-102 (146)
12 PF07172 GRP: Glycine rich pro 31.5 19 0.0004 24.7 0.4 18 8-25 6-23 (95)
13 PLN00213 predicted protein; Pr 30.7 12 0.00026 27.0 -0.7 22 1-22 1-22 (118)
14 PRK13240 pbsY photosystem II p 27.9 31 0.00067 20.4 0.8 14 8-21 3-16 (40)
15 PF10645 Carb_bind: Carbohydra 27.6 19 0.00041 22.4 -0.1 20 51-70 24-43 (52)
16 CHL00196 psbY photosystem II p 25.6 39 0.00084 19.5 0.9 14 8-21 3-16 (36)
17 KOG3900|consensus 24.1 45 0.00098 27.6 1.4 75 33-108 311-402 (413)
18 PF15240 Pro-rich: Proline-ric 21.7 46 0.001 25.5 1.0 15 11-25 2-16 (179)
19 PF07754 DUF1610: Domain of un 21.2 61 0.0013 17.0 1.1 16 85-100 6-21 (24)
20 PTZ00459 mucin-associated surf 21.1 44 0.00095 27.0 0.8 14 9-23 8-21 (291)
21 PF15117 UPF0697: Uncharacteri 20.8 65 0.0014 22.3 1.5 22 4-25 18-39 (99)
22 PF06298 PsbY: Photosystem II 20.7 56 0.0012 18.9 1.0 14 8-21 3-16 (36)
No 1
>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular. Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].
Probab=99.81 E-value=1.7e-19 Score=128.50 Aligned_cols=77 Identities=32% Similarity=0.556 Sum_probs=68.3
Q ss_pred cccCCCCceEeeeEEEEecCCCeeccEecceeeCccCceeeeccc--c-ccccCccccCCCCCceEEEEEEEeCCCCCCc
Q psy13264 28 TAASSDDCQVTPVIHVLQYPGCVPKPIPSFACTGRCSSYLQVSGS--K-IWTMERSCLCCQESGEREASVSLFCPKAKEG 104 (112)
Q Consensus 28 ~~~~~~~Ck~~~~~~~I~~~GC~~~~V~~~~C~G~C~S~S~YS~~--~-~~~~~~sCsCCqe~~t~~~~V~L~CpdGs~~ 104 (112)
....++||++++++|+|+++||.+++|.|++|+|+|+||++.+.. + ....+++|+||+|.++++..|+|+||++...
T Consensus 23 ~~~~~~~Ck~~p~~Q~I~~~GC~s~~I~N~~C~GqC~S~~iP~~~~~~~~~~~~~~C~~C~P~~~~~~~V~L~C~~~~~~ 102 (121)
T PF03045_consen 23 QPLKRDWCKTVPFTQVISHPGCESVTIQNNFCFGQCSSFYIPSSVPSDPGSQPFQSCSCCQPSRFRWVTVTLRCPGGSPP 102 (121)
T ss_pred cccccCccEEEeeEEEECcCCceEEEEEeeeeEEEcceEEeeCCcccccccccCcccCccCCCeeEEEEEEEECcCCCCC
Confidence 456789999999999999999999999999999999999998731 2 2224899999999999999999999999966
No 2
>smart00041 CT C-terminal cystine knot-like domain (CTCK). The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.
Probab=99.80 E-value=1.5e-19 Score=120.35 Aligned_cols=71 Identities=28% Similarity=0.624 Sum_probs=65.5
Q ss_pred eeeEEEEecCCCeeccEecceeeCccCceeeeccccccccCccccCCCCCceEEEEEEEeCCCCCCcceeEEEc
Q psy13264 38 TPVIHVLQYPGCVPKPIPSFACTGRCSSYLQVSGSKIWTMERSCLCCQESGEREASVSLFCPKAKEGEKKFRKV 111 (112)
Q Consensus 38 ~~~~~~I~~~GC~~~~V~~~~C~G~C~S~S~YS~~~~~~~~~sCsCCqe~~t~~~~V~L~CpdGs~~~~~Y~~V 111 (112)
+++.|+|+++||++..|.+++|+|+|+|+++|+ . +.++++|+||+|.+++++.|+|+||||+...++|..|
T Consensus 2 ~~~~q~i~~~gC~s~~v~~~~C~G~C~s~~~~~-~--~~~~~~c~CC~p~~~~~~~v~l~C~dg~~~~~~v~~i 72 (82)
T smart00041 2 SPVRQTITYNGCTSVTVKNAFCEGKCGSASSYS-I--QDVQHSCSCCQPHKTKTRQVRLRCPDGSTVKKTVMHI 72 (82)
T ss_pred cceEEEEEeCCceEeEEEcCcEEeECCCeeEcC-c--cccccCCCccCCceeEEEEEEEECCCCCEEEEEEEEE
Confidence 578999999999966699999999999999999 5 5788999999999999999999999999888888876
No 3
>PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins. It is believed to be involved in disulphide-linked dimerisation. ; PDB: 1QFW_B 1HRP_B 1HCN_B 1XWD_B 1FL7_B.
Probab=99.42 E-value=8.3e-14 Score=96.16 Aligned_cols=78 Identities=24% Similarity=0.484 Sum_probs=66.6
Q ss_pred CceEeeeEEEEecCCCe-eccEecceeeCccCceeeeccccccccCccccCCCCCceEEEEEEEeCCCCCCcceeEEEcC
Q psy13264 34 DCQVTPVIHVLQYPGCV-PKPIPSFACTGRCSSYLQVSGSKIWTMERSCLCCQESGEREASVSLFCPKAKEGEKKFRKVM 112 (112)
Q Consensus 34 ~Ck~~~~~~~I~~~GC~-~~~V~~~~C~G~C~S~S~YS~~~~~~~~~sCsCCqe~~t~~~~V~L~CpdGs~~~~~Y~~V~ 112 (112)
.|+.+..+..+.++||. ..+|++++|+|.|.|++.|+ ...+.+.++|.||++..+.++.|.+.||+|..+.++|..++
T Consensus 3 ~C~~~~~ti~ve~~gC~s~~~v~~~~C~G~C~s~~~~~-~~~~~~~~~~~Cc~~~~~~~~~v~~~C~~G~~~~~~y~~a~ 81 (105)
T PF00007_consen 3 GCHLTNVTIKVEKSGCRSCKTVNTTYCSGYCESSEPYS-KDPRKFQSQCVCCYPERTYETVVLLGCPDGVDPTFTYPVAT 81 (105)
T ss_dssp BSEEEEEEEEEEECCCTEEEEEEEEEEEEEEEEE--SC-TTTTT----EEEEEEEEEEEEEEETTBTTCS-EEEEEEEEE
T ss_pred CCeEeeeEEEEEeCCCCCceEEEEEEEEEEecCCeEec-ccCCcCcccCcCCCcceEEEEEECCCCccCCcceEEeeEee
Confidence 58999999999999999 48999999999999999998 78889999999999999999999999999999999998863
No 4
>PF05463 Sclerostin: Sclerostin (SOST); InterPro: IPR008835 This family contains several mammalian sclerostin (SOST) proteins. SOST is thought to suppress bone formation. Mutations of the SOST gene lead to sclerosteosis, a progressive sclerosing bone dysplasia with an autosomal recessive mode of inheritance. Radiologically, it is characterised by a generalised hyperostosis and sclerosis leading to a markedly thickened and sclerotic skull, with mandible, ribs, clavicles and all long bones also being affected. Due to narrowing of the foramina of the cranial nerves, facial nerve palsy, hearing loss and atrophy of the optic nerves can occur. Sclerosteosis is clinically and radiologically very similar to van Buchem disease, mainly differentiated by hand malformations and a large stature in sclerosteosis patients [].; GO: 0005615 extracellular space; PDB: 2KD3_A 3SOV_Z 2K8P_A.
Probab=97.14 E-value=0.0013 Score=50.88 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=48.1
Q ss_pred CCCCceEeeeEEEEecCCCe-eccEecceeeCccCceeeec-cccccc-cCcccc---CCCCCceEEEEEEEeCCCCCCc
Q psy13264 31 SSDDCQVTPVIHVLQYPGCV-PKPIPSFACTGRCSSYLQVS-GSKIWT-MERSCL---CCQESGEREASVSLFCPKAKEG 104 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC~-~~~V~~~~C~G~C~S~S~YS-~~~~~~-~~~sCs---CCqe~~t~~~~V~L~CpdGs~~ 104 (112)
..-.|.-...+.+|+..-|+ .+||.-..|.|+|....++- -..... +-+... =|-+.++....|.|.||||++.
T Consensus 64 ~~~~CrELrstrYisdG~C~S~kPikelvCsGqClP~~llPn~Ig~~k~W~R~~~~e~RCv~d~~RtqrVqL~C~dG~tR 143 (198)
T PF05463_consen 64 SQVGCRELRSTRYISDGQCRSAKPIKELVCSGQCLPAHLLPNWIGRGKYWWRRSAQEWRCVPDHTRTQRVQLQCPDGTTR 143 (198)
T ss_dssp TTTSS-CEEEEE--EETTEEESS-EEEEEE----S-----TTSTTSSS-SSSSS------EEEEEEEEEEEEE-TTTSSE
T ss_pred ccCccceeeeeeeeecCcccccCchhhheeeccccccccCcccccccceecccCCCcccccCCcceeEEEEEECCCCCee
Confidence 44569999999999999999 79999999999998776631 011111 223332 3889999999999999999987
Q ss_pred ceeEEEc
Q psy13264 105 EKKFRKV 111 (112)
Q Consensus 105 ~~~Y~~V 111 (112)
.|+-+-|
T Consensus 144 TyKI~vV 150 (198)
T PF05463_consen 144 TYKIRVV 150 (198)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7766554
No 5
>smart00068 GHB Glycoprotein hormone beta chain homologues. Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.
Probab=92.43 E-value=1.2 Score=31.56 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=52.0
Q ss_pred CCceEeeeEEEEecCCCe-eccEecceeeCccCceee-eccccccccCccccCCCCCceEEEEEEEe-CCCCCCcceeEE
Q psy13264 33 DDCQVTPVIHVLQYPGCV-PKPIPSFACTGRCSSYLQ-VSGSKIWTMERSCLCCQESGEREASVSLF-CPKAKEGEKKFR 109 (112)
Q Consensus 33 ~~Ck~~~~~~~I~~~GC~-~~~V~~~~C~G~C~S~S~-YS~~~~~~~~~sCsCCqe~~t~~~~V~L~-CpdGs~~~~~Y~ 109 (112)
..|....++-.+..+||- -..|+.+.|.|.|.+.-. |-+......++-|+- .+.+-++|.|+ ||-|--+.++|-
T Consensus 3 ~~C~~~n~ti~vEk~~C~~c~~i~TTiC~G~C~T~dpv~~~~~~~~~Q~vCtY---~d~~Y~tv~lpgCp~gvdp~~tYP 79 (107)
T smart00068 3 PGCRPTNATIAVEKEECPVCITINTTICAGYCYTRDPVYKSPLPPLPQRVCTY---RELRYETVRLPGCPPGVDPVVTYP 79 (107)
T ss_pred CCceeEeEEEEEeeCCCCceeEEEeEeECccccccCccccCCCCCcccCCccC---CceEEEEEECCCccCCCCCcEEee
Confidence 459999999899999999 479999999999987522 321223344555543 45566666664 888877777773
No 6
>cd00069 GHB Glycoprotein hormone beta chain homologues. Gonadotropins; reproductive hormones consisting of two glycosylated chains (alpha and beta) of similar topology with Cysteine-knot motifs.
Probab=92.34 E-value=0.83 Score=32.04 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=50.0
Q ss_pred ceEeeeEEEEecCCCe-eccEecceeeCccCcee-eeccccccccCccccCCCCCceEEEEEEEe-CCCCCCcceeEE
Q psy13264 35 CQVTPVIHVLQYPGCV-PKPIPSFACTGRCSSYL-QVSGSKIWTMERSCLCCQESGEREASVSLF-CPKAKEGEKKFR 109 (112)
Q Consensus 35 Ck~~~~~~~I~~~GC~-~~~V~~~~C~G~C~S~S-~YS~~~~~~~~~sCsCCqe~~t~~~~V~L~-CpdGs~~~~~Y~ 109 (112)
|+...++-.+..+||- -..|+.+.|.|.|.+.- .|-+......++-|+ =.+.+-++|.|+ ||-|--+.++|-
T Consensus 1 C~~~n~ti~vEk~~C~~c~~i~TTiC~G~C~T~dpv~~~~~~~~~Q~vCt---Y~~~~Y~tv~lpgCp~gvdp~~tYP 75 (102)
T cd00069 1 CRPTNITIAVEKEECPVCVTINTTICAGYCYTKDPVYKSPLSPLPQRVCT---YRELSYETVRLPGCPPGVDPGVTYP 75 (102)
T ss_pred CcceeEEEEEeeCCCCceEEEEeeeEccCcccccccccccCCCcccCccc---CCcEEEEEEECCCCcCCCCCCEEee
Confidence 5666777778888998 47899999999998863 232123344555554 355666677774 888887778874
No 7
>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....
Probab=71.74 E-value=2.7 Score=28.34 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=33.6
Q ss_pred eccEecceeeCccCceee-ecc-cc----------ccccCccccCCCCCceEEEEEEEeCCCCC
Q psy13264 51 PKPIPSFACTGRCSSYLQ-VSG-SK----------IWTMERSCLCCQESGEREASVSLFCPKAK 102 (112)
Q Consensus 51 ~~~V~~~~C~G~C~S~S~-YS~-~~----------~~~~~~sCsCCqe~~t~~~~V~L~CpdGs 102 (112)
++..+..+|.|.|..... +.. .. .......=.||.|++.+...+-..=.++.
T Consensus 25 P~~~~~~~C~G~C~~~~~~~~~~~~ha~~~~~~~~~~~~~~~~pCC~P~~~~~l~il~~~~~~~ 88 (105)
T PF00019_consen 25 PEGYNANYCSGSCPFPLSNHNNHSNHAILQSLMHSLNPRSVPQPCCVPTKYSPLSILYLDEDGN 88 (105)
T ss_dssp SSEEEEEEEESBSCSSSSCGCHHHHHHHHHHHHHHHSTTTSTS-EEEEEEEEEEEEEEEETTSE
T ss_pred cCccccccccceecccccccccccccccccccccccccccccCCcEeeeeeceEEEEEEECCCc
Confidence 678999999999986432 110 00 01134677899999999998855544444
No 8
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=48.31 E-value=28 Score=23.62 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=35.2
Q ss_pred eccEecceeeCccCceee--ecc-cc---------ccccCccccCCCCCceEEEEEEEeCCCCCC
Q psy13264 51 PKPIPSFACTGRCSSYLQ--VSG-SK---------IWTMERSCLCCQESGEREASVSLFCPKAKE 103 (112)
Q Consensus 51 ~~~V~~~~C~G~C~S~S~--YS~-~~---------~~~~~~sCsCCqe~~t~~~~V~L~CpdGs~ 103 (112)
++..+..+|.|.|+.... ++. .. ...-...-.||.|++.+..++.-.=.+|+.
T Consensus 22 P~~y~a~yC~G~C~~~~~~~~~~~~Ha~i~~~~~~~~~~~~~~pCC~P~~~~~l~~ly~~~~~~i 86 (102)
T smart00204 22 PKGYNAYYCEGECPFPLSTSLNATNHAIVQTLVHLLGPNPVPKPCCVPTKLSPLSMLYYDDDGNV 86 (102)
T ss_pred CCceeeeEEeeeCCCCcccccCCcchhhhhhhHHhcCCCCCCCCCccCceEecEEEEEEeCCCcE
Confidence 577889999999986532 110 00 011124568999999999988877666653
No 9
>PF10956 DUF2756: Protein of unknown function (DUF2756); InterPro: IPR020158 This entry contains proteins with no known function.
Probab=44.39 E-value=9.8 Score=26.82 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.9
Q ss_pred eehhhhhhhhhhhhhcCC
Q psy13264 8 IRVVCVLLPLCVLIRSNS 25 (112)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (112)
|.+++.+|||+++|+..+
T Consensus 4 ll~laalLPl~~~Aqp~n 21 (104)
T PF10956_consen 4 LLILAALLPLAAMAQPLN 21 (104)
T ss_pred HHHHHHHccHHHHHhHhh
Confidence 456888999999998865
No 10
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=39.49 E-value=30 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.2
Q ss_pred CCCCceEeeeEEEEecCCCe
Q psy13264 31 SSDDCQVTPVIHVLQYPGCV 50 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC~ 50 (112)
.++.|.+.-.-.-++..||.
T Consensus 23 ~~~~C~I~ItGeSv~I~gC~ 42 (59)
T PF02495_consen 23 SSPSCVIVITGESVTISGCE 42 (59)
T ss_pred CCCCcEEEEeCcEEEEECCC
Confidence 36779988888888888996
No 11
>PHA02661 vascular endothelial growth factor like protein; Provisional
Probab=38.65 E-value=56 Score=24.21 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=33.7
Q ss_pred ccccCCCCceEeeeEEEEecCC-----Ce--eccEecceeeCccCceeeeccccccccCccccCCCCCceEEEEEEE
Q psy13264 27 VTAASSDDCQVTPVIHVLQYPG-----CV--PKPIPSFACTGRCSSYLQVSGSKIWTMERSCLCCQESGEREASVSL 96 (112)
Q Consensus 27 ~~~~~~~~Ck~~~~~~~I~~~G-----C~--~~~V~~~~C~G~C~S~S~YS~~~~~~~~~sCsCCqe~~t~~~~V~L 96 (112)
+++..++.|+.+.....|..+- =. +.=|.+.+|.|=|++-.. =|+|++++.+++.+
T Consensus 40 ~ev~~~s~CkPRetvV~I~~E~p~~~n~~y~PsCV~V~RCgGCCnde~l--------------~C~PT~t~nVtm~v 102 (146)
T PHA02661 40 LDTSDKSSCQPRDTVVQLSDEYPGNTNDRYNPRCVTVRRCGGCCNDESQ--------------ICTPTETSNVTVTV 102 (146)
T ss_pred HHHhhccCceeeeEEEECccccCccccceEccCcEEeccccCCCCCCCC--------------eEEeeeEEEEEEEE
Confidence 4677888898776665444310 00 122567889999975332 15666666666665
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.52 E-value=19 Score=24.67 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=9.6
Q ss_pred eehhhhhhhhhhhhhcCC
Q psy13264 8 IRVVCVLLPLCVLIRSNS 25 (112)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (112)
++||+++|-.+||+.|..
T Consensus 6 ~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344555555555665544
No 13
>PLN00213 predicted protein; Provisional
Probab=30.73 E-value=12 Score=26.98 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.9
Q ss_pred Cceeceeeehhhhhhhhhhhhh
Q psy13264 1 MSIENLYIRVVCVLLPLCVLIR 22 (112)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (112)
|||.|++..|..+|..+.|=||
T Consensus 1 m~iknV~~ll~v~cIvvsVna~ 22 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSVNAQ 22 (118)
T ss_pred CchHHHHHHHHHHHHHheeccC
Confidence 8999999888888888888777
No 14
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=27.94 E-value=31 Score=20.36 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.4
Q ss_pred eehhhhhhhhhhhh
Q psy13264 8 IRVVCVLLPLCVLI 21 (112)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (112)
+|++.|++|+++-+
T Consensus 3 ~RlliVl~Pil~A~ 16 (40)
T PRK13240 3 LRLLIVLAPILAAA 16 (40)
T ss_pred hhHHHHHHHHHHHH
Confidence 68999999987654
No 15
>PF10645 Carb_bind: Carbohydrate binding; InterPro: IPR018909 This is a carbohydrate binding domain which has been shown in Schizosaccharomyces pombe (Fission yeast) to be required for septum localisation [].
Probab=27.64 E-value=19 Score=22.43 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.3
Q ss_pred eccEecceeeCccCceeeec
Q psy13264 51 PKPIPSFACTGRCSSYLQVS 70 (112)
Q Consensus 51 ~~~V~~~~C~G~C~S~S~YS 70 (112)
...+....|-|.|.+.++|+
T Consensus 24 ~~g~~l~~C~gaCY~~~~Y~ 43 (52)
T PF10645_consen 24 TNGVPLSYCGGACYSPSQYS 43 (52)
T ss_pred ECCccccccccccCCHHHce
Confidence 45677889999999999997
No 16
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=25.56 E-value=39 Score=19.55 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=11.2
Q ss_pred eehhhhhhhhhhhh
Q psy13264 8 IRVVCVLLPLCVLI 21 (112)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (112)
.|++.|++|++.-+
T Consensus 3 ~RlliVl~Pil~A~ 16 (36)
T CHL00196 3 TRLLVIAAPVLAAA 16 (36)
T ss_pred hhHHHHHHHHHHHH
Confidence 58899999987654
No 17
>KOG3900|consensus
Probab=24.13 E-value=45 Score=27.59 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=46.9
Q ss_pred CCceEeeeEEE---EecCCCe--eccEecceeeCccCcee-----eecccc----ccccC---ccccCCCCCceEEEEEE
Q psy13264 33 DDCQVTPVIHV---LQYPGCV--PKPIPSFACTGRCSSYL-----QVSGSK----IWTME---RSCLCCQESGEREASVS 95 (112)
Q Consensus 33 ~~Ck~~~~~~~---I~~~GC~--~~~V~~~~C~G~C~S~S-----~YS~~~----~~~~~---~sCsCCqe~~t~~~~V~ 95 (112)
..|..+++.-- |.=++-. ++.....||.|.|...- ... +. .+++. -.=.||-|++.+..+|=
T Consensus 311 ~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G~C~~p~~~~~~tnH-a~vq~l~~~~~p~~~p~pCCvPtklsplsvL 389 (413)
T KOG3900|consen 311 NRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSGTCPFPLADHAATNH-AIVQTLVHAVNPEPVPKPCCVPTKLSPLSVL 389 (413)
T ss_pred CceeccceEeehhhcCCcceEeCCCcccCceecCcCCCchhhcCCcch-HHHHHHHHhhCCCCCCCCccccCccCceEEE
Confidence 34887765522 4445576 78899999999998731 111 00 11111 12269999999998887
Q ss_pred EeCCCCCCcceeE
Q psy13264 96 LFCPKAKEGEKKF 108 (112)
Q Consensus 96 L~CpdGs~~~~~Y 108 (112)
-.=.+++..-.+|
T Consensus 390 y~d~~~~vv~k~y 402 (413)
T KOG3900|consen 390 YFDDNGNVVLKTY 402 (413)
T ss_pred EEeCCCcEEEEEe
Confidence 7766666444444
No 18
>PF15240 Pro-rich: Proline-rich
Probab=21.65 E-value=46 Score=25.54 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=10.8
Q ss_pred hhhhhhhhhhhhcCC
Q psy13264 11 VCVLLPLCVLIRSNS 25 (112)
Q Consensus 11 ~~~~~~~~~~~~~~~ 25 (112)
|+|||-.+|||-|-+
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 667777778877665
No 19
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.16 E-value=61 Score=17.00 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=10.3
Q ss_pred CCCceEEEEEEEeCCC
Q psy13264 85 QESGEREASVSLFCPK 100 (112)
Q Consensus 85 qe~~t~~~~V~L~Cpd 100 (112)
.+..-.++.|...||+
T Consensus 6 ~~i~~r~~~v~f~CPn 21 (24)
T PF07754_consen 6 RPIAPREQAVPFPCPN 21 (24)
T ss_pred CcccCcccCceEeCCC
Confidence 3444445578888887
No 20
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=21.08 E-value=44 Score=27.01 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=10.6
Q ss_pred ehhhhhhhhhhhhhc
Q psy13264 9 RVVCVLLPLCVLIRS 23 (112)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (112)
||||| |-||||-=-
T Consensus 8 RVLLV-CALCVLWCg 21 (291)
T PTZ00459 8 RVLLV-CALCVLWCG 21 (291)
T ss_pred hHHHH-HHHHHHhcC
Confidence 77887 678998654
No 21
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=20.83 E-value=65 Score=22.33 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.2
Q ss_pred eceeeehhhhhhhhhhhhhcCC
Q psy13264 4 ENLYIRVVCVLLPLCVLIRSNS 25 (112)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (112)
.|.|+++++|-+-|++-|+-|.
T Consensus 18 TNVYlivilvS~~l~~YarrNK 39 (99)
T PF15117_consen 18 TNVYLIVILVSFGLFMYARRNK 39 (99)
T ss_pred ccEEeehhHHhhHHHHhhhhcC
Confidence 4899999999999999988664
No 22
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=20.70 E-value=56 Score=18.86 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.9
Q ss_pred eehhhhhhhhhhhh
Q psy13264 8 IRVVCVLLPLCVLI 21 (112)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (112)
.|++.|++|++.-+
T Consensus 3 ~R~liVl~Pil~A~ 16 (36)
T PF06298_consen 3 WRLLIVLLPILPAA 16 (36)
T ss_pred chhHHHHHHHHHHH
Confidence 58899999987644
Done!