Query psy13264
Match_columns 112
No_of_seqs 106 out of 220
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:20:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k8p_A Sclerostin; WNT signall 98.2 7.9E-06 2.7E-10 61.4 8.3 79 32-111 53-138 (189)
2 1hcn_B Human chorionic gonadot 96.4 0.0037 1.3E-07 45.2 4.7 76 31-109 5-83 (145)
3 4ay9_B Follitropin subunit bet 93.2 0.13 4.5E-06 35.5 4.7 74 33-109 1-77 (111)
4 1agq_A GDNF, glial cell-derive 80.4 0.63 2.2E-05 33.1 1.5 74 31-109 38-125 (135)
5 2ask_A Artemin; glial cell der 75.7 1.3 4.6E-05 30.3 1.9 73 32-109 13-102 (113)
6 3evs_B Growth/differentiation 65.5 11 0.00038 25.4 4.8 75 28-102 9-100 (117)
7 1zkz_A Growth/differentiation 64.4 14 0.00047 24.6 5.0 71 32-102 5-92 (110)
8 2qcq_A Bone morphogenetic prot 56.1 39 0.0013 22.3 6.2 71 32-102 5-93 (110)
9 2r52_A BMP-6, bone morphogenet 53.2 32 0.0011 24.0 5.5 78 31-108 38-132 (143)
10 2arp_A Inhibin beta A chain; c 52.9 28 0.00097 23.2 5.1 79 31-109 7-106 (116)
11 3hh2_A Growth/differentiation 50.0 7.5 0.00026 25.9 1.7 77 32-109 12-99 (109)
12 2h62_A BMP-2, BMP-2A, bone mor 45.9 17 0.00057 24.4 3.0 71 31-102 10-97 (114)
13 1lxi_A Bone morphogenetic prot 38.8 34 0.0012 23.7 3.8 78 31-108 34-128 (139)
14 2tgi_A Transforming growth fac 33.4 25 0.00086 23.4 2.3 67 31-97 11-91 (112)
15 3rjr_A Transforming growth fac 22.9 42 0.0015 26.7 2.2 66 32-97 263-342 (363)
No 1
>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A
Probab=98.17 E-value=7.9e-06 Score=61.36 Aligned_cols=79 Identities=23% Similarity=0.433 Sum_probs=59.4
Q ss_pred CCCceEeeeEEEEecCCCe-eccEecceeeCccCceeee---ccccccccCcc--ccCCCCCceEEEEEEEeCCCCCC-c
Q psy13264 32 SDDCQVTPVIHVLQYPGCV-PKPIPSFACTGRCSSYLQV---SGSKIWTMERS--CLCCQESGEREASVSLFCPKAKE-G 104 (112)
Q Consensus 32 ~~~Ck~~~~~~~I~~~GC~-~~~V~~~~C~G~C~S~S~Y---S~~~~~~~~~s--CsCCqe~~t~~~~V~L~CpdGs~-~ 104 (112)
.-.|.-..++.+|+.+.|+ .++|....|.|.|...... .+... -+..+ =.||.+.++..+.|.|.|+||++ .
T Consensus 53 ~~~Crg~r~r~Yisdg~CrS~kpVk~lvCsG~C~p~~~lpn~i~~~K-~wr~s~~~~cCvp~rsRrrRIqm~C~DGtt~r 131 (189)
T 2k8p_A 53 EYSCRELHFTRYVTDGPCRSAKPVTELVCSGQCGPARLLPNAIGRGK-WWRPSGPDFRCIPDRYRAQRVQLLCPGGEAPR 131 (189)
T ss_dssp CSSSCEEEEEECCCCSSCEESSCEEEEEECCCCCCCCCCSSCCCSSC-CCSCCCCCCCCEECCEEEEEEEEECCTTSCCE
T ss_pred ccccccceeeEEEecCceeEccccccceEeccccCcccccccccccc-ccccCCCcccccCCceeeEEEEEEcCCCCeee
Confidence 4569999999999999999 7999999999999864442 10111 01112 24999999999999999999997 4
Q ss_pred ceeEEEc
Q psy13264 105 EKKFRKV 111 (112)
Q Consensus 105 ~~~Y~~V 111 (112)
.+..+.|
T Consensus 132 t~ki~vV 138 (189)
T 2k8p_A 132 ARKVRLV 138 (189)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4544433
No 2
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=96.43 E-value=0.0037 Score=45.21 Aligned_cols=76 Identities=16% Similarity=0.361 Sum_probs=57.8
Q ss_pred CCCCceEeeeEEEEecCCCe-eccEecceeeCccCcee-eeccccccccCccccCCCCCceEEEEEEE-eCCCCCCccee
Q psy13264 31 SSDDCQVTPVIHVLQYPGCV-PKPIPSFACTGRCSSYL-QVSGSKIWTMERSCLCCQESGEREASVSL-FCPKAKEGEKK 107 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC~-~~~V~~~~C~G~C~S~S-~YS~~~~~~~~~sCsCCqe~~t~~~~V~L-~CpdGs~~~~~ 107 (112)
....|..+.++-.+..+||. -..|+.+.|.|.|.|.. .|- .......| .+|.=.+.+.++|.| .|+.|-.+-++
T Consensus 5 ~~~~C~l~n~Ti~vEke~C~~c~~InTtiC~GyC~T~dpv~~-~p~~~~~Q--~vCTy~e~~y~tv~LpgC~~gvdp~~t 81 (145)
T 1hcn_B 5 LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQ-GVLPALPQ--VVCNYRDVRFESIRLPGCPRGVNPVVS 81 (145)
T ss_dssp SSBBSEEEEEEEEECCTTCSCCEEEEEEEEEEEEEECCCCBT-TCSSCCCC--EEEEEEEEEEEEEECTTCCSSCCCEEE
T ss_pred ccCCCeEeeeEEEEeeCCCCceEEEEeeeEcCEeecCCCCCc-CCCCCccC--CCcccCCEEEEEEEcCCCcCCCCccEE
Confidence 34579999999999999999 47899999999998876 232 11112222 577778888999999 59999877777
Q ss_pred EE
Q psy13264 108 FR 109 (112)
Q Consensus 108 Y~ 109 (112)
|.
T Consensus 82 YP 83 (145)
T 1hcn_B 82 YA 83 (145)
T ss_dssp EE
T ss_pred ec
Confidence 73
No 3
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=93.23 E-value=0.13 Score=35.53 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCceEeeeEEEEecCCCe-eccEecceeeCccCceee-eccccccccCccccCCCCCceEEEEEEEe-CCCCCCcceeEE
Q psy13264 33 DDCQVTPVIHVLQYPGCV-PKPIPSFACTGRCSSYLQ-VSGSKIWTMERSCLCCQESGEREASVSLF-CPKAKEGEKKFR 109 (112)
Q Consensus 33 ~~Ck~~~~~~~I~~~GC~-~~~V~~~~C~G~C~S~S~-YS~~~~~~~~~sCsCCqe~~t~~~~V~L~-CpdGs~~~~~Y~ 109 (112)
+.|....++-.+..+||. -..|+.+.|.|.|.+.-. |-.......++- |.=.+..-++|.|+ ||.|--+.|+|-
T Consensus 1 ~~C~~~n~ti~vEk~~C~~c~~i~TtiC~G~C~T~d~v~~~p~~~~~Q~V---Cty~~~~y~tv~LpgC~pgVdP~~tYP 77 (111)
T 4ay9_B 1 NSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKT---CTFKELVYETVRVPGCAHHADSLYTYP 77 (111)
T ss_dssp CCEEEEEEEEEEEEGGGTEEEEEEEEEEEEEEEEECCSSCCTTCCCCCCE---EEEEEEEEEEEEECCCTTSCCEEEEEE
T ss_pred CCcceEeEEEEEEcCCCCcccEEEEeeEccCcccCCccccCcCCCccCCC---cccCCEEEEEEECCCccCCCCCCEEee
Confidence 368999999999999998 578999999999987532 321222333444 44456667777775 998887777774
No 4
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*
Probab=80.45 E-value=0.63 Score=33.07 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=46.0
Q ss_pred CCCCceEeeeEEEEecCCCe---eccEecceeeCccCceeeeccccc-ccc---------CccccCCCCCceE-EEEEEE
Q psy13264 31 SSDDCQVTPVIHVLQYPGCV---PKPIPSFACTGRCSSYLQVSGSKI-WTM---------ERSCLCCQESGER-EASVSL 96 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC~---~~~V~~~~C~G~C~S~S~YS~~~~-~~~---------~~sCsCCqe~~t~-~~~V~L 96 (112)
....|..+.+.-..+.-|=- ++.+...||+|.|.....-. +-. +.+ .....||.|++.+ ..++ |
T Consensus 38 ~~~~C~l~~L~V~f~dLGwg~~spe~y~a~yC~G~C~~~~TNH-AivL~~L~~~~~l~p~~vp~PCCvPt~~s~~IS~-L 115 (135)
T 1agq_A 38 KNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMY-DKILKNLSRSRRLTSDKVGQACCRPVAFDDDLSF-L 115 (135)
T ss_dssp -CTTSEEEEEEEEGGGGCSSCCCCCEEEEEEEESCCCSCCSHH-HHHHHHHHHHC------CCCCCEEEEEECCCEEE-E
T ss_pred CCCCceeEEEEEEHHHhCCCccCcCeeEeeeeeeeCCCCCccH-HHHHHHHHhhcccCCCCCCCCCccCeecCCCceE-E
Confidence 46679998887666555552 46788999999998754311 111 111 2337999999998 6554 4
Q ss_pred eCCCCCCcceeEE
Q psy13264 97 FCPKAKEGEKKFR 109 (112)
Q Consensus 97 ~CpdGs~~~~~Y~ 109 (112)
|+...-+.|.
T Consensus 116 ---D~~~v~k~~~ 125 (135)
T 1agq_A 116 ---DDSLVYHILR 125 (135)
T ss_dssp ---CTTSCEEEEC
T ss_pred ---cCCcceeecC
Confidence 5554434443
No 5
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=75.70 E-value=1.3 Score=30.29 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=44.9
Q ss_pred CCCceEeeeEEEEecCCCe---eccEecceeeCccCceeeeccccc-cc-------------cCccccCCCCCceEEEEE
Q psy13264 32 SDDCQVTPVIHVLQYPGCV---PKPIPSFACTGRCSSYLQVSGSKI-WT-------------MERSCLCCQESGEREASV 94 (112)
Q Consensus 32 ~~~Ck~~~~~~~I~~~GC~---~~~V~~~~C~G~C~S~S~YS~~~~-~~-------------~~~sCsCCqe~~t~~~~V 94 (112)
...|..+.+.-..+.-|=- ++.+...||+|.|.....-. +-. +. -...=.||.|++.+..++
T Consensus 13 ~~~C~l~~l~V~f~dLGw~~~ap~~y~a~yC~G~C~~~~tnH-a~vl~~l~~~~~~~~p~~~~~~~~PCCvPt~~~~iS~ 91 (113)
T 2ask_A 13 ARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPH-DLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSF 91 (113)
T ss_dssp CCBSEEEEEEEEGGGGSSSCCCCCEEEEEEEECBCGGGCCHH-HHHHHHHHHHTCSCCCSSSCCCSSCEEEEEEEEEEEE
T ss_pred CCCceeEEEEEEHHHcCCCccCcCeeeeeeeeeeCCCCCCcH-HHHHHHHHHhccccCcccCCCCCCCCccCceecceEE
Confidence 4568888877655544442 46788899999997643211 100 00 123478999999997666
Q ss_pred EEeCCCCCCcceeEE
Q psy13264 95 SLFCPKAKEGEKKFR 109 (112)
Q Consensus 95 ~L~CpdGs~~~~~Y~ 109 (112)
| |+...-..|.
T Consensus 92 -L---d~~v~~k~~~ 102 (113)
T 2ask_A 92 -M---DVNSTWRTVD 102 (113)
T ss_dssp -E---CTTSCEEEEE
T ss_pred -E---cCceeeeecC
Confidence 3 6654444444
No 6
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A
Probab=65.49 E-value=11 Score=25.37 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=45.5
Q ss_pred cccCCCCceEeeeEEEEecCCCe-----eccEecceeeCccCceee--eccc-c---------ccccCccccCCCCCceE
Q psy13264 28 TAASSDDCQVTPVIHVLQYPGCV-----PKPIPSFACTGRCSSYLQ--VSGS-K---------IWTMERSCLCCQESGER 90 (112)
Q Consensus 28 ~~~~~~~Ck~~~~~~~I~~~GC~-----~~~V~~~~C~G~C~S~S~--YS~~-~---------~~~~~~sCsCCqe~~t~ 90 (112)
+-..+..|..+++....+.-|-. ++..+..+|.|.|...-. +++. . .+.-...-.||.|++.+
T Consensus 9 ~~~~~~~C~r~~l~V~F~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHa~iq~l~~~~~p~~~~~pCCvPt~l~ 88 (117)
T 3evs_B 9 SKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPESTPPTCCVPTRLS 88 (117)
T ss_dssp -----CBSEEECCEEETGGGTGGGTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHCTTTCCCCCEEEEEEE
T ss_pred CCCCCCCcEEEEEEEEHHHCCCcceeeCCCcccceeeeeECCCCcccccCCchHHHHHHHHHhcCCCCCCCCCEeceeec
Confidence 33446678888877665555662 578899999999986422 1100 0 01112457899999999
Q ss_pred EEEEEEeCCCCC
Q psy13264 91 EASVSLFCPKAK 102 (112)
Q Consensus 91 ~~~V~L~CpdGs 102 (112)
..++--.=.+++
T Consensus 89 ~ls~ly~d~~~~ 100 (117)
T 3evs_B 89 PISILFIDSANN 100 (117)
T ss_dssp EEEEEEECTTSC
T ss_pred cEEEEEEeCCCC
Confidence 988765534444
No 7
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=64.37 E-value=14 Score=24.60 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=46.6
Q ss_pred CCCceEeeeEEEEecCCC----e-eccEecceeeCccCceee--eccc-c---------ccccCccccCCCCCceEEEEE
Q psy13264 32 SDDCQVTPVIHVLQYPGC----V-PKPIPSFACTGRCSSYLQ--VSGS-K---------IWTMERSCLCCQESGEREASV 94 (112)
Q Consensus 32 ~~~Ck~~~~~~~I~~~GC----~-~~~V~~~~C~G~C~S~S~--YS~~-~---------~~~~~~sCsCCqe~~t~~~~V 94 (112)
...|..+.+..-.+.=|- . ++..+..+|.|.|+.... +++. . .+.-...-.||.|++.+..++
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~~~~~~~~~tnHaivq~l~~~~~~~~~~~pCCvPt~l~~ls~ 84 (110)
T 1zkz_A 5 GSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLSPISV 84 (110)
T ss_dssp CCBSEEEEEEEETTTTTCTTTEEECSEEEEEEEESBCCSSCCTTSCCCHHHHHHHHHHHHSTTTSCCCCEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcccccCCCchHHHHHHHHhcCCCCCCCCcccceeEccEEE
Confidence 567888887766655566 2 678899999999987522 1100 0 011123478999999998887
Q ss_pred EEeCCCCC
Q psy13264 95 SLFCPKAK 102 (112)
Q Consensus 95 ~L~CpdGs 102 (112)
--.=.+|+
T Consensus 85 ly~d~~~~ 92 (110)
T 1zkz_A 85 LYKDDMGV 92 (110)
T ss_dssp EEECTTCC
T ss_pred EEEeCCCC
Confidence 66655554
No 8
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=56.14 E-value=39 Score=22.29 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=45.1
Q ss_pred CCCceEeeeEEEEecCCC----e-eccEecceeeCccCceee--ecc-ccc------c----ccCccccCCCCCceEEEE
Q psy13264 32 SDDCQVTPVIHVLQYPGC----V-PKPIPSFACTGRCSSYLQ--VSG-SKI------W----TMERSCLCCQESGEREAS 93 (112)
Q Consensus 32 ~~~Ck~~~~~~~I~~~GC----~-~~~V~~~~C~G~C~S~S~--YS~-~~~------~----~~~~sCsCCqe~~t~~~~ 93 (112)
+..|..+.+..-.+.=|- . ++..+..+|.|.|+.... +++ ..+ + .-...-.||.|++.+..+
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~pl~~~~~~tnHa~vq~l~~~~~~~~~~~~pCCvPt~l~~ls 84 (110)
T 2qcq_A 5 PRNCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKMSSLS 84 (110)
T ss_dssp CSBSEEECCEEETTTTTCTTTEEECSEEECCEEECBCCSSCCGGGCCCHHHHHHHHHHHTCCSTTCCCCCEEECSEEEEE
T ss_pred CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcccccCCChhHHHHHHHHhccCCCCCCCCcCCCeeEccEE
Confidence 456888777766655566 2 688899999999986321 110 010 0 011246899999999887
Q ss_pred EEEeCCCCC
Q psy13264 94 VSLFCPKAK 102 (112)
Q Consensus 94 V~L~CpdGs 102 (112)
+--.=.+|+
T Consensus 85 ~ly~d~~~~ 93 (110)
T 2qcq_A 85 ILFFDENKN 93 (110)
T ss_dssp EEEECTTCC
T ss_pred EEEEeCCCC
Confidence 766544554
No 9
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}
Probab=53.23 E-value=32 Score=24.02 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=49.7
Q ss_pred CCCCceEeeeEEEEecCCC----e-eccEecceeeCccCceee--eccc-c---------ccccCccccCCCCCceEEEE
Q psy13264 31 SSDDCQVTPVIHVLQYPGC----V-PKPIPSFACTGRCSSYLQ--VSGS-K---------IWTMERSCLCCQESGEREAS 93 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC----~-~~~V~~~~C~G~C~S~S~--YS~~-~---------~~~~~~sCsCCqe~~t~~~~ 93 (112)
....|..+++..-.+.=|- . ++..+..+|.|.|..... ++.. . .+.-...-.||.|++.+..+
T Consensus 38 ~~~~C~r~~l~VdF~dlGW~dWIiaP~gy~A~yC~G~C~~pl~~~~~~tnHaivq~l~~~~~p~~~~~pCCvPt~l~~is 117 (143)
T 2r52_A 38 LKTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAIS 117 (143)
T ss_dssp -CCBSEEECCEEETTTTTCGGGEEECSEEECCEEESBCCSSCCTTTTBCHHHHHHHHHHHTCTTTSCCCCEEEEEEEEEE
T ss_pred CCCCceEEEEEEEHhHCCCceeEEcCCceeeeeeeeECCCccccccCCCchHHHHHHHHhcCCCCCCCCCCcceeeccEE
Confidence 3556999888777666677 2 678889999999986421 1100 0 01112346899999999998
Q ss_pred EEEeCCCCCCcceeE
Q psy13264 94 VSLFCPKAKEGEKKF 108 (112)
Q Consensus 94 V~L~CpdGs~~~~~Y 108 (112)
+-..=.+|+..-..|
T Consensus 118 ~Ly~d~~~~v~~k~~ 132 (143)
T 2r52_A 118 VLYFDDNSNVILKKY 132 (143)
T ss_dssp EEEECTTCCEEEEEE
T ss_pred EEEEECCCCEEEEEc
Confidence 876655555333333
No 10
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=52.89 E-value=28 Score=23.15 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=47.2
Q ss_pred CCCCceEeeeEEEEecCCC---e--eccEecceeeCccCceee-eccc-c-----------ccc---cCccccCCCCCce
Q psy13264 31 SSDDCQVTPVIHVLQYPGC---V--PKPIPSFACTGRCSSYLQ-VSGS-K-----------IWT---MERSCLCCQESGE 89 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC---~--~~~V~~~~C~G~C~S~S~-YS~~-~-----------~~~---~~~sCsCCqe~~t 89 (112)
....|..+.+..-.+.=|- . ++..+..+|.|.|+.... +++. . .+. -...-.||.|++.
T Consensus 7 ~~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~p~~~~~~tn~a~~~~~i~~~~~~~~~p~~~~~pCCvPt~l 86 (116)
T 2arp_A 7 KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKL 86 (116)
T ss_dssp --CCSEEECCEEEHHHHTCTTTEEECSEEECCEEESCCCC---------CCHHHHHHHHTTSTTCSSCCCCCCCEEEEEE
T ss_pred CCCCceeEEEEEEhhhcCCcccEECCCceEeEEEeeeCCCCccccCCcchHHHHHHHHhhhccccCCCCCCCCccccccC
Confidence 4567888887766555566 2 688999999999986432 1100 0 011 1234789999999
Q ss_pred EEEEEEEeCCCCCCcceeEE
Q psy13264 90 REASVSLFCPKAKEGEKKFR 109 (112)
Q Consensus 90 ~~~~V~L~CpdGs~~~~~Y~ 109 (112)
+..++--.=.+|+..-.+|.
T Consensus 87 ~~ls~ly~d~~~~v~~~~~~ 106 (116)
T 2arp_A 87 RPMSMLYYDDGQNIIKKDIQ 106 (116)
T ss_dssp EEEEEEEECTTCCEEEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEcC
Confidence 98887766555553334443
No 11
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=49.96 E-value=7.5 Score=25.94 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=46.4
Q ss_pred CCCceEeeeEEEEecCCCe----eccEecceeeCccCceeeecccc-------ccccCccccCCCCCceEEEEEEEeCCC
Q psy13264 32 SDDCQVTPVIHVLQYPGCV----PKPIPSFACTGRCSSYLQVSGSK-------IWTMERSCLCCQESGEREASVSLFCPK 100 (112)
Q Consensus 32 ~~~Ck~~~~~~~I~~~GC~----~~~V~~~~C~G~C~S~S~YS~~~-------~~~~~~sCsCCqe~~t~~~~V~L~Cpd 100 (112)
+..|..+.+.--.+.=|-. ++..+..+|.|.|+.....+ .. .+.-...-.||.|++.+..++--.=.+
T Consensus 12 ~~~C~r~~l~V~F~dlGWdWIiaP~~y~a~yC~G~C~~p~~~~-~~h~~l~~~~~p~~~~~pCCvPt~l~~ls~ly~d~~ 90 (109)
T 3hh2_A 12 ESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGECEFVFLQK-YPHTHLVHQANPRGSAGPCCTPTKMSPINMLYFNGK 90 (109)
T ss_dssp CCBSEEECCEEEHHHHTCTTEEECSEEECCEEECBCCTTTTCC-CHHHHHHHHHCCTTCCCCCEEEEEEEEEEEEEECTT
T ss_pred CCCcEEEEEEEeHHHcCCCeEeCCCcccceeecccCCCccccc-CchhhhhhhcCcccCCCceEeeeeeccEEEEEEeCC
Confidence 3568887766533322331 57788999999997642211 10 011124578999999999888777555
Q ss_pred CCCcceeEE
Q psy13264 101 AKEGEKKFR 109 (112)
Q Consensus 101 Gs~~~~~Y~ 109 (112)
|+..-.+|.
T Consensus 91 ~~v~~~~~~ 99 (109)
T 3hh2_A 91 EQIIYGKIP 99 (109)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEEEcC
Confidence 653333443
No 12
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=45.95 E-value=17 Score=24.39 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=44.3
Q ss_pred CCCCceEeeeEEEEecCCC---e--eccEecceeeCccCceee--ecc-cc---------ccccCccccCCCCCceEEEE
Q psy13264 31 SSDDCQVTPVIHVLQYPGC---V--PKPIPSFACTGRCSSYLQ--VSG-SK---------IWTMERSCLCCQESGEREAS 93 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC---~--~~~V~~~~C~G~C~S~S~--YS~-~~---------~~~~~~sCsCCqe~~t~~~~ 93 (112)
....|..+++..-.+.=|- . ++..+..+|.|.|..... +++ .. .+. ...-.||.|++.+..+
T Consensus 10 ~~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHaivq~l~~~~~~-~~~~pCCvPt~l~~is 88 (114)
T 2h62_A 10 LKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNS-KIPKACCVPTELSAIS 88 (114)
T ss_dssp -CCBSEEECCEEEHHHHTCTTTEEECSEEECCEEECBCCSSCCTTSEECHHHHHHHHHHHHCT-TSCCCCEEEEEEEEEE
T ss_pred CCCCceeEEEEEEeeecCCcccEEcCCceEeEeeeeECCCCcccccCCchHHHHHHHHHhcCC-CCCCCcccceeeccEE
Confidence 3567888877655444344 1 678899999999986421 110 00 111 2456899999999988
Q ss_pred EEEeCCCCC
Q psy13264 94 VSLFCPKAK 102 (112)
Q Consensus 94 V~L~CpdGs 102 (112)
+--.=.+++
T Consensus 89 ~ly~d~~~~ 97 (114)
T 2h62_A 89 MLYLDENEK 97 (114)
T ss_dssp EEEECTTSC
T ss_pred EEEEeCCCC
Confidence 766533343
No 13
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A
Probab=38.77 E-value=34 Score=23.71 Aligned_cols=78 Identities=19% Similarity=0.361 Sum_probs=47.4
Q ss_pred CCCCceEeeeEEEEecCCC----e-eccEecceeeCccCceee--eccc-c---------ccccCccccCCCCCceEEEE
Q psy13264 31 SSDDCQVTPVIHVLQYPGC----V-PKPIPSFACTGRCSSYLQ--VSGS-K---------IWTMERSCLCCQESGEREAS 93 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~~~GC----~-~~~V~~~~C~G~C~S~S~--YS~~-~---------~~~~~~sCsCCqe~~t~~~~ 93 (112)
....|..+++..-.+.=|- . ++..+..+|.|.|+..-. ++.. . .+.-...-.||.|++.+..+
T Consensus 34 ~~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~pl~~~~~~tnHaivq~l~~~~~p~~~~~pCCvPt~l~~is 113 (139)
T 1lxi_A 34 QRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAIS 113 (139)
T ss_dssp --CBSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHCTTTCCCCCEEEEEEEEEE
T ss_pred CCCcceeEEEEEEhhhCCCceeEECCCceeeeeeeeECCCCcccccCCCchHHHHHHHHhcCCCCCCCCCCcCeeeccEE
Confidence 3456988887766554466 2 678899999999986421 1100 0 01112346899999999888
Q ss_pred EEEeCCCCCCcceeE
Q psy13264 94 VSLFCPKAKEGEKKF 108 (112)
Q Consensus 94 V~L~CpdGs~~~~~Y 108 (112)
+-..=.+++..-..|
T Consensus 114 ~ly~d~~~~v~~~~~ 128 (139)
T 1lxi_A 114 VLYFDDSSNVILKKY 128 (139)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEeCCCCEEEEEc
Confidence 766645555333333
No 14
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A
Probab=33.40 E-value=25 Score=23.38 Aligned_cols=67 Identities=18% Similarity=0.377 Sum_probs=41.6
Q ss_pred CCCCceEeeeEEEEe-cCCCe----eccEecceeeCccCceeeecccc---------ccccCccccCCCCCceEEEEEEE
Q psy13264 31 SSDDCQVTPVIHVLQ-YPGCV----PKPIPSFACTGRCSSYLQVSGSK---------IWTMERSCLCCQESGEREASVSL 96 (112)
Q Consensus 31 ~~~~Ck~~~~~~~I~-~~GC~----~~~V~~~~C~G~C~S~S~YS~~~---------~~~~~~sCsCCqe~~t~~~~V~L 96 (112)
....|..+++..-.+ .-|-. ++..+..+|.|.|+......... .+.-...-.||.|++.+..++--
T Consensus 11 ~~~~C~r~~l~VdF~~dlGW~WIiaP~~y~A~yC~G~C~~p~~~~tnHa~vq~l~~~~~p~~~~~pCCvPt~l~~ls~ly 90 (112)
T 2tgi_A 11 VQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWSSDTQHSRVLSLYNTINPEASASPCCVSQDLEPLTILY 90 (112)
T ss_dssp CCSBSEEECCEEEHHHHHCCTTEEECSEEECCEEECBCCTTSSBCSHHHHHHHHHHHHCGGGCCCCCEEECSEEEEEEEE
T ss_pred CCCCceeEEEEEEhhhhcCCceEcCcCcEEEEEeeeECcCCccccchhhHHHHHHHhcCCCCCCCCceeceeeccEEEEE
Confidence 456788877665554 33553 46778999999998632110000 01112357899999999888754
Q ss_pred e
Q psy13264 97 F 97 (112)
Q Consensus 97 ~ 97 (112)
.
T Consensus 91 ~ 91 (112)
T 2tgi_A 91 Y 91 (112)
T ss_dssp E
T ss_pred E
Confidence 4
No 15
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}
Probab=22.89 E-value=42 Score=26.74 Aligned_cols=66 Identities=15% Similarity=0.300 Sum_probs=40.4
Q ss_pred CCCceEeeeEEEEe-cCCCe----eccEecceeeCccCceeeeccc---------cccccCccccCCCCCceEEEEEEEe
Q psy13264 32 SDDCQVTPVIHVLQ-YPGCV----PKPIPSFACTGRCSSYLQVSGS---------KIWTMERSCLCCQESGEREASVSLF 97 (112)
Q Consensus 32 ~~~Ck~~~~~~~I~-~~GC~----~~~V~~~~C~G~C~S~S~YS~~---------~~~~~~~sCsCCqe~~t~~~~V~L~ 97 (112)
+..|..+++..--+ .=|-. ++.....||.|.|+.....+.. ..+.-.....||.|++.+..++--.
T Consensus 263 ~~~Ccr~~~~VdF~~dlGW~WIiaP~gy~a~yC~G~C~~~~~~~t~ha~v~~l~~~~~p~~~~~pCCvPt~l~~ls~ly~ 342 (363)
T 3rjr_A 263 EKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLDTQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYY 342 (363)
T ss_dssp CCSSEEECCEEEHHHHHCCCSEEECSEEECCEEESCCCCTTTSCSCCHHHHHHTSSCCSSSSSSCCEEECSEEEEEEEEE
T ss_pred cCCccccceEEEeecccCcceecCCCcccceEeeeeCCCCccCCCchHHHHHHHHhcCCCcCCCCccccccccceEEEEE
Confidence 45788877665543 33553 4666789999999753210000 0111123578999999998887654
Done!