RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13264
(112 letters)
>gnl|CDD|217336 pfam03045, DAN, DAN domain. This domain contains 9 conserved
cysteines and is extracellular. Therefore the cysteines
may form disulphide bridges. This family of proteins has
been termed the DAN family after the first member to be
reported. This family includes DAN, Cerberus and
Gremlin. The gremlin protein is an antagonist of bone
morphogenetic protein signaling. It is postulated that
all members of this family antagonise different TGF beta
pfam00019 ligands. Recent work shows that the DAN
protein is not an efficient antagonist of BMP-2/4 class
signals, we found that DAN was able to interact with
GDF-5 in a frog embryo assay, suggesting that DAN may
regulate signaling by the GDF-5/6/7 class of BMPs in
vivo.
Length = 121
Score = 34.3 bits (79), Expect = 0.003
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 32 SDDCQVTPVIHVLQYPGCVPKPIPSFACTGRCSSYL---QVSGSKIWTMERSCLCCQESG 88
D C+ P + + GC P + + C G+C+S+ + +SC C +
Sbjct: 26 KDWCKTQPFTQTITHEGCEPVTVQNRFCFGQCNSFYIPRYIPQETESGDFQSCSSCMPAK 85
Query: 89 EREASVSLFCPKAKEGEKKFRKVM 112
V+L CP K + +KV+
Sbjct: 86 FTTVHVTLNCPGRKP-VTRIKKVL 108
>gnl|CDD|214482 smart00041, CT, C-terminal cystine knot-like domain (CTCK). The
structures of transforming growth factor-beta
(TGFbeta), nerve growth factor (NGF), platelet-derived
growth factor (PDGF) and gonadotropin all form 2 highly
twisted antiparallel pairs of beta-strands and contain
three disulphide bonds. The domain is non-globular and
little is conserved among these presumed homologues
except for their cysteine residues. CT domains are
predicted to form homodimers.
Length = 82
Score = 30.8 bits (70), Expect = 0.038
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 37 VTPVIHVLQYPGCVPKPIPSFACTGRCSSYLQVSGSKIWTMERSCLCCQESGEREASVSL 96
+PV + Y GC + + C G+C S S I ++ SC CCQ + V L
Sbjct: 1 KSPVRQTITYNGCTSVTVKNAFCEGKCGSASSYS---IQDVQHSCSCCQPHKTKTRQVRL 57
Query: 97 FCP 99
CP
Sbjct: 58 RCP 60
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 28.8 bits (65), Expect = 0.53
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 57 FACTGRCSSYLQVSGSKIWTM--ERSCLCCQESGER 90
F TG+ +SG+KI T E+S + QE GER
Sbjct: 157 FDETGK------ISGAKITTYLLEKSRVVSQEPGER 186
>gnl|CDD|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase.
Length = 637
Score = 27.0 bits (60), Expect = 2.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 91 EASVSLFCPKAKEGEKKFRKVM 112
+A + CP KEG++ F VM
Sbjct: 173 KALFNRLCPANKEGKRSFAAVM 194
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 26.3 bits (58), Expect = 5.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 9 RVVCVLLPLCVLIRSNSSVTAASSDDCQVTPVIHVLQYPGCVPK 52
R V +LP LI+S A + CQ P + +L PG +PK
Sbjct: 503 RSVQKILPPQALIKSIRQAVA---EACQEAPSVVLLLNPGALPK 543
>gnl|CDD|184994 PRK15034, PRK15034, nitrate/nitrite transport protein NarU;
Provisional.
Length = 462
Score = 25.6 bits (56), Expect = 6.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 5 NLYIRVVCVLLPLCV 19
NL+I V C+LL CV
Sbjct: 35 NLWISVSCLLLAFCV 49
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA;
Provisional.
Length = 318
Score = 25.4 bits (56), Expect = 7.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 72 SKIWTMERSCLCCQESGERE 91
++I T+ C+CC S E E
Sbjct: 55 TQIKTLTNGCICCSRSNELE 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.424
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,065,753
Number of extensions: 380398
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 7
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)