RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13264
         (112 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.9 bits (74), Expect = 0.014
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 37/119 (31%)

Query: 18  C-VLIRS-NSSVT-AASSDDCQVTPVIHV-------------LQYPGCVPKPIPSFACTG 61
           C +L+ +    VT   S+       + H              L+Y  C P+ +P    T 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 62  -----------------RCSSYLQVSGSKIWTMERSCLCCQESGE-REA--SVSLFCPK 100
                               ++  V+  K+ T+  S L   E  E R+    +S+F P 
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PP 383


>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative
           splicing, glycoprotein, secreted, signaling protein; NMR
           {Homo sapiens} PDB: 2kd3_A
          Length = 189

 Score = 25.7 bits (55), Expect = 3.4
 Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 52  KPIPSFACTGRCSSY----LQVSGSKIWTMERSCLCCQESGEREASVSLFCP 99
           KP+    C+G+C         +   K W        C     R   V L CP
Sbjct: 74  KPVTELVCSGQCGPARLLPNAIGRGKWWRPSGPDFRCIPDRYRAQRVQLLCP 125


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 3.7
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 85  QESGEREASVSLFCPKA 101
           Q   + +AS+ L+   +
Sbjct: 20  QALKKLQASLKLYADDS 36


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,567,948
Number of extensions: 78073
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.2 bits)