BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13265
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 339 bits (869), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 170/291 (58%), Positives = 202/291 (69%), Gaps = 47/291 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
MP++IAGN+ Q+KKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 106 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG ANWYF+LAR++PDPK PA+KAFTGFIVE DTPG+ GRK
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 225
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 226 VFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFG 285
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
+ HQA++FMLA+MA+ +E +R+++ +AA EVD GRRNT Y T
Sbjct: 286 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 345
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
DAVQ+ GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R I+K KN
Sbjct: 346 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKYKN 396
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 338 bits (868), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/291 (58%), Positives = 202/291 (69%), Gaps = 47/291 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
MP++IAGN+ Q+KKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 131 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 190
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG ANWYF+LAR++PDPK PA+KAFTGFIVE DTPG+ GRK
Sbjct: 191 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 250
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 251 VFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFG 310
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
+ HQA++FMLA+MA+ +E +R+++ +AA EVD GRRNT Y T
Sbjct: 311 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 370
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
DAVQ+ GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R I+K KN
Sbjct: 371 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKYKN 421
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 337 bits (864), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 170/291 (58%), Positives = 200/291 (68%), Gaps = 47/291 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+P++I GN QQKKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 106 VPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG ANWYF+LAR++PDPK PASKAFTGFIVE DTPG+ GRK
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGI 225
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 226 VFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFG 285
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
+A HQ ++F+LADMA+ +E +RL++ +AA E+D GRRNT Y T
Sbjct: 286 KLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLAT 345
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
DAVQVFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R I + KN
Sbjct: 346 DAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYKN 396
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 336 bits (861), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 169/291 (58%), Positives = 201/291 (69%), Gaps = 47/291 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
MP++IAGN+ Q+KKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 106 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG ANWYF+LAR++PDPK PA+KAFTGFIVE DTPG+ GRK
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 225
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 226 VFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFG 285
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
+ HQA++FMLA+MA+ +E +R+++ +AA EVD GRRNT Y T
Sbjct: 286 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 345
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
DAVQ+ GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV+R I+K KN
Sbjct: 346 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKYKN 396
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 335 bits (858), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/290 (58%), Positives = 199/290 (68%), Gaps = 47/290 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+P++I GN QQKKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 96 VPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 155
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG ANWYF+LAR++PDPK PASKAFTGFIVE DTPG+ GRK
Sbjct: 156 WITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGI 215
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 216 VFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFG 275
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
+A HQ ++F+LADMA+ +E +RL++ +AA E+D GRRNT Y T
Sbjct: 276 KLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLAT 335
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243
DAVQVFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R I + K
Sbjct: 336 DAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK 385
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 154/285 (54%), Gaps = 50/285 (17%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMW 61
PV++AG E Q++++L L E+P +AA+ ++EPG GSD +KT+A+++GD ++LNG KMW
Sbjct: 96 PVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMW 155
Query: 62 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTP-------GRK-------- 106
I+NGG A W V A NP+ + K +VER TPG G++
Sbjct: 156 ISNGGEAEWVVVFATVNPELR---HKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELV 212
Query: 107 --------------------------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
VAAG+VG+A+R LDEA KYA ER+AFG
Sbjct: 213 FEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGE 272
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD 194
PIA QA+ F L DM IGIE +R+ AA D G +
Sbjct: 273 PIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQ 332
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
A+Q+ GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 333 AIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 151/287 (52%), Gaps = 51/287 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
M +++ G+E +K+ L + +A+Y ++E AGSD ++T+AV GD+WILNG K
Sbjct: 109 MGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKC 168
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG + WY V+A T+PD + + F+V +D G T G K
Sbjct: 169 WITNGGKSTWYTVMAVTDPDK---GANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTEL 225
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+ A AVG+AQ LD A Y ERK FG
Sbjct: 226 YFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFG 285
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXX-XXXXXXXXX 192
P++ +Q V FMLADMA+ IEA+RL AAA + G + +
Sbjct: 286 RPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVT 345
Query: 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
TDAVQ+FGG G+ D+PVE++MRDAKI QIYEGT QIQR+++SRA++
Sbjct: 346 TDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALL 392
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 142/279 (50%), Gaps = 55/279 (19%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G+EAQ+++YL L + A+C+TEP AGSD ++ +A + ++LNG K WIT+ G
Sbjct: 100 GSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAG 159
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
A+ Y V+ART K + F+VE+ TPGL+ GR
Sbjct: 160 HAHLYVVMARTE--------KGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVF 211
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
VAA AVG+A+ + A YA ER+ FG + H
Sbjct: 212 VPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEH 271
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVF 199
QA+AF +ADM + I A+R ++AA + D G R TL +AVQV
Sbjct: 272 QAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVL 331
Query: 200 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GG G++ DY VE+ RDAK+ +IYEGT++IQRL+++R +
Sbjct: 332 GGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIAREL 370
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 146/286 (51%), Gaps = 51/286 (17%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKM 60
P+ G EAQ++K+L LVE + A+ +TEP AG+D +G +T A K D + LNG K+
Sbjct: 100 PIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKI 159
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
+ITNGG A+ Y V A T+ K + T FI+E TPG T G+K
Sbjct: 160 FITNGGAADIYIVFAMTD---KSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMEL 216
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAA A+G+A+ L +A +Y+ +R FG
Sbjct: 217 VFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFG 276
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
P+ Q+++F LADM + IEA+R KAA + G+ T+ T
Sbjct: 277 KPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTT 336
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
+AVQ+FGG G++ +YPV + MRDAKI QIYEGT ++Q ++ A++
Sbjct: 337 EAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 141/284 (49%), Gaps = 52/284 (18%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMW 61
P+++ G E Q+K++L ++ + AY ++EP AGSD ++ A +++NG K W
Sbjct: 107 PLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSW 166
Query: 62 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK--------------- 106
IT+GG A++Y + ART S+ + F+V D PGL+ G+
Sbjct: 167 ITHGGKADFYTLFARTGE-----GSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAF 221
Query: 107 --------------------------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
+AA A GLAQ LDEA YA ER AFG
Sbjct: 222 YDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGR 281
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD 194
I HQ + F+LADMA + +R T++ AA D GR + TD
Sbjct: 282 KIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTD 341
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
AVQVFGG G+ DY VE+ MR+AKI QI+EGT QIQRL+++R +
Sbjct: 342 AVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGL 385
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 48/283 (16%)
Query: 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWI 62
+V GNEAQ++KYL +L+ + A ++EP AGSDV +K KA KKG+ +ILNG K WI
Sbjct: 108 LVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWI 167
Query: 63 TNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK---------------- 106
TNG A+ V A+T+ PAS+ T FIVE+ PG + +K
Sbjct: 168 TNGPDADVLIVYAKTDL-AAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIF 226
Query: 107 -------------------------------VAAGAVGLAQRCLDEATKYALERKAFGVP 135
+A G +GL Q LD Y R+AFG
Sbjct: 227 EDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQK 286
Query: 136 IAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTDA 195
I Q + +ADM + A R A D G D
Sbjct: 287 IGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDG 346
Query: 196 VQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
+Q FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++ RA
Sbjct: 347 IQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 389
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 50/290 (17%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMW 61
P++ G+ Q+++++ + + ++EPG GSD T A ++GD W+LNG K W
Sbjct: 102 PILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAW 161
Query: 62 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK--------------- 106
ITN A+ V A T+ + +K + F+V TPGLT G+K
Sbjct: 162 ITNSWEASATVVFASTD---RSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLI 218
Query: 107 --------------------------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
+A+ A+G+AQ LD A KYA R AFG
Sbjct: 219 FEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGA 278
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD 194
P+ Q + F LADMA+ +E++RL +AA D + T
Sbjct: 279 PLTKLQNIQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQ 338
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
A+Q+ GG G+ ++ P E+ RDA+I +IYEGT++IQRL+++ ++ ++
Sbjct: 339 AIQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 388
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 141/305 (46%), Gaps = 70/305 (22%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQ 58
+P+V G E Q++KYL +L +AAYC+TEPG+GSD KT+A + G +ILNG
Sbjct: 119 LPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGV 178
Query: 59 KMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPG-------------- 104
K WI+N G A+ + V A+ + + FT F+VERDTPGL+ G
Sbjct: 179 KQWISNAGFAHLFTVFAKVD-------GEHFTAFLVERDTPGLSFGPEEKKMGIKASSTR 231
Query: 105 ---------------------------------RKVAAGAVGLAQRCLDEATKYALERKA 131
K+ AGAVG A+R L+ + +YA +R
Sbjct: 232 QVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQ 291
Query: 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVD---LGRRN-----------TLYX 177
FG PI + L +MA I A+ + +D LG++ +
Sbjct: 292 FGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEA 351
Query: 178 XXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 237
+ VQ+ GG G++ +YP+E+ RDA+I +I+EGT +I RL++
Sbjct: 352 SIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGM 411
Query: 238 IIEKA 242
++ +A
Sbjct: 412 LLRRA 416
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 50/291 (17%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMW 61
P++ G++ Q++ ++ + + ++EPG GSD T A +GD W+LNG K W
Sbjct: 98 PILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAW 157
Query: 62 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK--------------- 106
ITN A+ V A T+ + +K+ + F+V TPGLT G+K
Sbjct: 158 ITNAWEASAAVVFASTD---RALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLI 214
Query: 107 --------------------------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
+A+ A+G+AQ LD A YA R AFG
Sbjct: 215 FEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGA 274
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD 194
P+ Q + F LADMA+ +E++RL +AA D +
Sbjct: 275 PLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQ 334
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS 245
A+Q+ GG G+ ++ P E+ RDA+I +IYEGT++IQRL+++ ++ +++
Sbjct: 335 AIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRSA 385
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 145/287 (50%), Gaps = 50/287 (17%)
Query: 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWI 62
+++AG+EAQ++ +L +L + A+ +TEPG+GSD +KTKA K W LNG K +I
Sbjct: 100 ILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFI 159
Query: 63 TNGGVANWYFVLARTNPDPKCPASK--AFTGFIVERDTPGLTPGRK-------------- 106
T G VA Y V+ART+P P P K + F R GL GRK
Sbjct: 160 TQGSVAGVYVVMARTDP-PPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQL 218
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+AA AVGL Q LD A YA R+AFG
Sbjct: 219 ILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFG 278
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
PIA + V+F LA+ A +EA+RL ++KAA D GR TL
Sbjct: 279 RPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACD 338
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 240
+A+Q+ GG G+ DYPVE+ RDA++ +I EGT++I +L+++R ++E
Sbjct: 339 EAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 125/279 (44%), Gaps = 51/279 (18%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G E Q+ YL +L E V ++C++E GAGSD +KT+A K+GD ++LNG KMWI++
Sbjct: 126 GTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAE 184
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
A + V+A +P K T F+V+RDTPGL G+
Sbjct: 185 HAGLFLVMANVDP---TIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVK 241
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
+AA +GLAQ C D Y ER FG +
Sbjct: 242 VPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDF 301
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVF 199
Q + +A +A +EA+RL AA ++ G+ + ++
Sbjct: 302 QGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWM 361
Query: 200 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GG G+ DYPVEK RDAKI IYEG + IQ +++ I
Sbjct: 362 GGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHI 400
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 137/283 (48%), Gaps = 52/283 (18%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
GNE Q+ K+ L A+YC+TEPG+GSD + T A K+GD +ILNG K +I+ G
Sbjct: 115 GNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAG 174
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
++ Y V+ RT P K + +VE+ TPGL+ G+K
Sbjct: 175 ESDIYVVMCRTGG----PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCA 230
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
+A+ ++G A + + RK FG P+A++
Sbjct: 231 VPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASN 290
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD-AVQV 198
Q + F LADMA + A+RL AA + R++ + + A+Q+
Sbjct: 291 QYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQM 350
Query: 199 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241
GG G+ DY V++ +RD++++QI EG+ ++ R+++SR+++++
Sbjct: 351 HGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 132/281 (46%), Gaps = 51/281 (18%)
Query: 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWI 62
++ G+EA +KKY+ +L + + +TEP AGSDV + + A KGD W+LNG K WI
Sbjct: 101 ILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWI 160
Query: 63 TNGGVANWYFVLARTNPDPKCPASKAFTGFIVE-RDTPGLT------------------- 102
+N A+ A T+ K S+ + F++E R+ PG+
Sbjct: 161 SNAAQADVLIYYAYTD---KAAGSRGLSAFVIEPRNFPGIKTSNLEKLGSHASPTGELFL 217
Query: 103 -------------PGR--------------KVAAGAVGLAQRCLDEATKYALERKAFGVP 135
PG AAG VGLAQ CLD A KY ER+ FG P
Sbjct: 218 DNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKP 277
Query: 136 IAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNT-LYXXXXXXXXXXXXXXXXTD 194
I Q M+A MA+ +EA+RL KAAA D GR N L
Sbjct: 278 IGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANY 337
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVS 235
A+++ G G++++YPV + RDA Y + EG+A I ++I++
Sbjct: 338 AMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIA 378
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 138/311 (44%), Gaps = 77/311 (24%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQ 58
+P+V+ GNE Q+KKYL L +AAY +TEPG+GSD G KT A +G ++LNG+
Sbjct: 124 LPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGE 183
Query: 59 KMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPG------------------ 100
K WITN A+ + V A+ + + F+ FIVE+D G
Sbjct: 184 KQWITNSAFADVFIVYAKID-------GEHFSAFIVEKDYAGVSTSPEEKKXGIKCSSTR 236
Query: 101 ----------------------------LTPGR-KVAAGAVGLAQRCLDEATKYALERKA 131
L GR K+ G VG A+R ++ + +YA +R+
Sbjct: 237 TLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQ 296
Query: 132 FGVPIAAHQAVAFMLADMA-------------IGIEASRLTWMKAAAEVDLGR------- 171
F PIA + LA+ A +G+ SR + + + EV G+
Sbjct: 297 FKQPIARFPLIQEKLANXAAKTYAAESSVYRTVGLFESRXSTL-SEEEVKDGKAVAASIA 355
Query: 172 RNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 231
+ + VQ+ GG GF ++Y +E+ RD++I +I+EGT +I R
Sbjct: 356 EYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINR 415
Query: 232 LIVSRAIIEKA 242
LIV + KA
Sbjct: 416 LIVPGTFLRKA 426
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 122/279 (43%), Gaps = 48/279 (17%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G E Q++K+L + V ++ A +TEPGAGSD+ + T AVK GD +I+NGQK +ITNG
Sbjct: 106 GTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGI 165
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
A+ V +T+P K P + + +VERDTPG T GRK
Sbjct: 166 HADLIVVACKTDPQAK-PPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAK 224
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
VA A A+ +Y +R AFG ++
Sbjct: 225 VPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEF 284
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVF 199
Q V F LA+MA I R + E G++ +A+Q+
Sbjct: 285 QTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLH 344
Query: 200 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GG G+ +Y + + RD + IY GT ++ + I++R +
Sbjct: 345 GGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 113/278 (40%), Gaps = 54/278 (19%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G++ Q+ ++L + + + +TEP GSD G++T+A + GD+WIL G KMWITNG
Sbjct: 127 GSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGS 186
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT------------------------ 102
VA+ V ART+ + GF+V DTPG T
Sbjct: 187 VADVAVVWARTD--------EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVR 238
Query: 103 -------PGRK---------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 140
PG + GA+G A+ CL+ A YA R+ F PI Q
Sbjct: 239 LPDSARLPGATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQ 298
Query: 141 AVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFG 200
LADM + L + + D G A V G
Sbjct: 299 LTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLG 358
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
+G +YPV + + + YEGT+++ LI+ +A+
Sbjct: 359 ASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 131/294 (44%), Gaps = 53/294 (18%)
Query: 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKM 60
+++ G +AQ++KYL +L VAA+C+TEP +GSD ++T AV G + LNG K+
Sbjct: 141 ILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKL 200
Query: 61 WITNGGVANWYFVLARTN-PDPKCPASKA-FTGFIVERDTPGLT---PGRK--------- 106
WI+NGG+A+ + V A+T DP A K T F+VER G+T P +K
Sbjct: 201 WISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTA 260
Query: 107 -----------------------------------VAAGAVGLAQRCLDEATKYALERKA 131
+AA G + + +A +A R
Sbjct: 261 EVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQ 320
Query: 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXX 191
FG I + LA M + + +A +D G +
Sbjct: 321 FGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWK 380
Query: 192 XTD-AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVS-RAIIEKAK 243
TD +Q+ GG GF + VE+++RD +I++I+EGT I RL V+ + ++K K
Sbjct: 381 VTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGK 434
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 131/294 (44%), Gaps = 53/294 (18%)
Query: 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKM 60
+++ G +AQ++KYL +L VAA+C+TEP +GSD ++T AV G + LNG K+
Sbjct: 121 ILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKL 180
Query: 61 WITNGGVANWYFVLARTN-PDPKCPASKA-FTGFIVERDTPGLT---PGRK--------- 106
WI+NGG+A+ + V A+T DP A K T F+VER G+T P +K
Sbjct: 181 WISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTA 240
Query: 107 -----------------------------------VAAGAVGLAQRCLDEATKYALERKA 131
+AA G + + +A +A R
Sbjct: 241 EVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQ 300
Query: 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXX 191
FG I + LA M + + +A +D G +
Sbjct: 301 FGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWK 360
Query: 192 XTD-AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVS-RAIIEKAK 243
TD +Q+ GG GF + VE+++RD +I++I+EGT I RL V+ + ++K K
Sbjct: 361 VTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGK 414
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 131/293 (44%), Gaps = 70/293 (23%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+P+ G++AQ++KYL +L + + +TEP GSD + T+A K + L+G KM
Sbjct: 113 VPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM 172
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT------------------ 102
WITN +A+ + V A+ + D + GFI+E+ GL+
Sbjct: 173 WITNSPIADVFVVWAKLDEDGR----DEIRGFILEKGCKGLSAPAIHGKVGLRASITGEI 228
Query: 103 -------------PGRK---------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
P K +A GA+G A+ C A +Y L+RK FG
Sbjct: 229 VLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGR 288
Query: 135 PIAAHQAVAFMLADM----AIGIEAS-RLTWMK----AAAEV-DLGRRNTLYXXXXXXXX 184
P+AA+Q + LADM +G++ RL MK AA E+ + +RN+
Sbjct: 289 PLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARL 348
Query: 185 XXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 237
A + GGNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 349 ----------ARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 391
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 131/293 (44%), Gaps = 70/293 (23%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+P+ G++AQ++KYL +L + + +TEP GSD + T+A K + L+G KM
Sbjct: 110 VPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM 169
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT------------------ 102
WITN +A+ + V A+ + D + GFI+E+ GL+
Sbjct: 170 WITNSPIADVFVVWAKLDEDGR----DEIRGFILEKGCKGLSAPAIHGKVGLRASITGEI 225
Query: 103 -------------PGRK---------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
P K +A GA+G A+ C A +Y L+RK FG
Sbjct: 226 VLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGR 285
Query: 135 PIAAHQAVAFMLADM----AIGIEAS-RLTWMK----AAAEV-DLGRRNTLYXXXXXXXX 184
P+AA+Q + LADM +G++ RL MK AA E+ + +RN+
Sbjct: 286 PLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARL 345
Query: 185 XXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 237
A + GGNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 346 ----------ARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 388
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 131/293 (44%), Gaps = 70/293 (23%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+P+ G++AQ++KYL +L + + +TEP GSD + T+A K + L+G KM
Sbjct: 109 VPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM 168
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT------------------ 102
WITN +A+ + V A+ + D + GFI+E+ GL+
Sbjct: 169 WITNSPIADVFVVWAKLDEDGR----DEIRGFILEKGCKGLSAPAIHGKVGLRASITGEI 224
Query: 103 -------------PGRK---------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
P K +A GA+G A+ C A +Y L+RK FG
Sbjct: 225 VLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGR 284
Query: 135 PIAAHQAVAFMLADM----AIGIEAS-RLTWMK----AAAEV-DLGRRNTLYXXXXXXXX 184
P+AA+Q + LADM +G++ RL MK AA E+ + +RN+
Sbjct: 285 PLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARL 344
Query: 185 XXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 237
A + GGNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 345 ----------ARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 387
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 126/295 (42%), Gaps = 75/295 (25%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQK 59
P+ G+E Q++KYL +L + ++ + +TEP +GSD + ++T+A + LNG K
Sbjct: 107 PIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK 166
Query: 60 MWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT----------------- 102
WITN +A+ + V AR GF++E+ GL+
Sbjct: 167 TWITNSPMADLFVVWARCE-------DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGM 219
Query: 103 --------------PGRK---------------VAAGAVGLAQRCLDEATKYALERKAFG 133
PG +A G +G ++ CL A +YAL+R FG
Sbjct: 220 IIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFG 279
Query: 134 VPIAAHQAVAFMLADM----AIGIEAS----RLTWM-KAAAE-VDLGRRNTLYXXXXXXX 183
VP+A +Q + LADM +G+ A RL KAA E V L +RN
Sbjct: 280 VPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNC-------- 331
Query: 184 XXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
A + GGNG + +Y V + + + YEGT I LI+ RAI
Sbjct: 332 --GKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 384
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 126/295 (42%), Gaps = 75/295 (25%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQK 59
P+ G+E Q++KYL +L + ++ + +TEP +GSD + ++T+A + LNG K
Sbjct: 105 PIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK 164
Query: 60 MWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT----------------- 102
WITN +A+ + V AR GF++E+ GL+
Sbjct: 165 TWITNSPMADLFVVWARCE-------DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGM 217
Query: 103 --------------PGRK---------------VAAGAVGLAQRCLDEATKYALERKAFG 133
PG +A G +G ++ CL A +YAL+R FG
Sbjct: 218 IIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFG 277
Query: 134 VPIAAHQAVAFMLADM----AIGIEAS----RLTWM-KAAAE-VDLGRRNTLYXXXXXXX 183
VP+A +Q + LADM +G+ A RL KAA E V L +RN
Sbjct: 278 VPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNC-------- 329
Query: 184 XXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
A + GGNG + +Y V + + + YEGT I LI+ RAI
Sbjct: 330 --GKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 382
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 110/284 (38%), Gaps = 52/284 (18%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+ + + G+EAQ++KYL L + VA + +TEP GSD +G+ T A K W +NGQK
Sbjct: 145 LTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKR 204
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGL------------------- 101
WI N A+ + AR + GFIV++D PGL
Sbjct: 205 WIGNSTFADLLIIFARNT------TTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDI 258
Query: 102 ------------TPGRK---------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
PG VA +G++ D +Y ERK FG
Sbjct: 259 LLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGA 318
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD 194
P+AA Q L M ++A L + + G+ +
Sbjct: 319 PLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASL 378
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
++ GGNG +D+ V K D + YEGT I L+ R +
Sbjct: 379 GRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 422
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 110/284 (38%), Gaps = 52/284 (18%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+ + + G+EAQ++KYL L + VA + +TEP GSD +G+ T A K W +NGQK
Sbjct: 145 LTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKR 204
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGL------------------- 101
WI N A+ + AR + GFIV++D PGL
Sbjct: 205 WIGNSTFADLLIIFARNT------TTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDI 258
Query: 102 ------------TPGRK---------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
PG VA +G++ D +Y ERK FG
Sbjct: 259 LLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGA 318
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD 194
P+AA Q L M ++A L + + G+ +
Sbjct: 319 PLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASL 378
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
++ GGNG +D+ V K D + YEGT I L+ R +
Sbjct: 379 GRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 422
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 75/295 (25%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQK 59
P+ G+E Q++KYL +L + ++ + +TEP +GSD + ++T+A + LNG K
Sbjct: 107 PIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK 166
Query: 60 MWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT----------------- 102
WITN +A+ + V AR GF++E+ GL+
Sbjct: 167 TWITNSPMADLFVVWARCE-------DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGM 219
Query: 103 --------------PGRK---------------VAAGAVGLAQRCLDEATKYALERKAFG 133
PG +A G +G ++ CL A +YAL+R FG
Sbjct: 220 IIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFG 279
Query: 134 VPIAAHQAVAFMLADM----AIGIEAS----RLTWM-KAAAE-VDLGRRNTLYXXXXXXX 183
VP+A +Q + LADM +G+ A RL KAA E V L +RN
Sbjct: 280 VPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNC-------- 331
Query: 184 XXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
A + GGNG + +Y V + + + Y+GT I LI+ RAI
Sbjct: 332 --GKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYDGTHDIHALILGRAI 384
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 114/284 (40%), Gaps = 54/284 (19%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNG-VKTKAVKKGDEWILNGQKM 60
P+ G+E Q++++L +L +V + +TEP GSD G +KT+A ++GD W+LNG KM
Sbjct: 103 PIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKM 162
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPG-------------------- 100
WITNG +A+ + A+ GF+V DTPG
Sbjct: 163 WITNGNLAHLAVIWAKDE-------GGEVLGFLVPTDTPGFQAREVKRKMSLRASVTSEL 215
Query: 101 -------------------------LTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGV 134
LT R +A GA+G + +EA +A R FG
Sbjct: 216 VLEEVRVPESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGE 275
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXTD 194
P+A Q V LA+M L + A D G+
Sbjct: 276 PLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARM 335
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
A + GG+G +Y + M + + YEGT + L++ R I
Sbjct: 336 ARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREI 379
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 74/297 (24%)
Query: 1 MPVVIA-GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQK 59
+P + A G++A ++Y+ + ++ + VTEPGAGSDV ++T+AV++GD +++NG K
Sbjct: 120 LPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAK 179
Query: 60 MWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK------------- 106
+IT+G A++ RT P + ++++++PG R+
Sbjct: 180 TFITSGVRADFVTTAVRTGG----PGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAE 235
Query: 107 ----------------------------------VAAGAVGLAQRCLDEATKYALERKAF 132
+A A A R LD A +A ER+ F
Sbjct: 236 LSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETF 295
Query: 133 GVPIAAHQAVAFMLADMAIGIEASRLTWMKA-----------AAEVDLGRRNTLYXXXXX 181
G P+ Q + LA+MA ++ + T+ +A AEV + + +Y
Sbjct: 296 GRPLTGRQIIRHKLAEMARQVDVA-CTYTRAVMQRWLAGEDVVAEVSMAKNTAVY----- 349
Query: 182 XXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
+AVQ+FGG G+ + +E+ RD +I I GT +I ++++ I
Sbjct: 350 -----ACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 121/288 (42%), Gaps = 55/288 (19%)
Query: 1 MPVVIA-GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQK 59
+P +IA G++ Y+ + + A +TEPG GSDV ++T+A GD +++NG K
Sbjct: 117 VPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAK 176
Query: 60 MWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKV------------ 107
+IT+G A++ ART P + + +V++ TPG RK+
Sbjct: 177 TYITSGVRADYVVTAARTGG----PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAE 232
Query: 108 ----------------------------AAGAVGL-------AQRCLDEATKYALERKAF 132
A VGL AQRCLD ++ R F
Sbjct: 233 LSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTF 292
Query: 133 GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXX- 191
G P+ + QAV LA MA I+ +R+ + + E L L
Sbjct: 293 GRPLISRQAVQNTLAGMARRIDVARV-YTRHVVERQLAGETNLIAEVCFAKNTAVEAGEW 351
Query: 192 -XTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
AVQ+FGG G+ ++ VE+ RD +I I GT +I + ++ +
Sbjct: 352 VANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 121/291 (41%), Gaps = 52/291 (17%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNG 65
G++ Q++ +L L+E I +A+C+TEP A SD + AV +GDE ++NG+K W T
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGV 184
Query: 66 GVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT----------------------- 102
G + ++ DP + +V DTPG+T
Sbjct: 185 GHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD 244
Query: 103 -------------------------PGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPI 136
PGR A +GLA+ L+ A + L+R AFG P+
Sbjct: 245 NVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPL 304
Query: 137 AAHQAVAFMLADMAIGIEASRLTWMKAAAEVD-LGRRNTLYXXXXXXXXXXXXXXXXTD- 194
+AD I I +RL + AA +D +G L D
Sbjct: 305 VNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDM 364
Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS 245
A+Q+ GG G ++D+P+ +A+ ++ +G ++ R +V+R + K N
Sbjct: 365 AIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKYAND 415
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 74/292 (25%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G+E Q+ ++L RL + + +TEP GS+ G++T+A + G +WILNG KMWITNG
Sbjct: 122 GSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGN 181
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPG---RKVAA-------------- 109
+A+ V A+T+ GF+V DTPG T RK++
Sbjct: 182 LADVATVWAQTD--------DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVR 233
Query: 110 -----------------------------GAVGLAQRCLDEATKYALERKAFGVPIAAHQ 140
GA+G A+ L+ Y R+ F P++ +Q
Sbjct: 234 LPASAQLPLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQ 293
Query: 141 AVAFMLADMAIGIE-----ASRLTWMKAA-----AEVDLGRRNTLYXXXXXXXXXXXXXX 190
LA+M + + A L +K A ++ LG+ N +
Sbjct: 294 LTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIAR------- 346
Query: 191 XXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKA 242
+ + GG+G +Y + + + YEGT+++ L + +A+ KA
Sbjct: 347 ---ECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGKA 395
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 112/281 (39%), Gaps = 56/281 (19%)
Query: 5 IAGNEAQQKKYLGRLVEEPIVAAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWIT 63
+ G+E Q+K++L L++ I + +C+TEP A SD ++ + D +++NG+K W +
Sbjct: 129 LYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSS 188
Query: 64 NGG--VANWYFVLARTNPDPKCPASKAFTGFIVERDTPG--------------------- 100
G VL RT + K + +V +TPG
Sbjct: 189 GAGNPKCKIAIVLGRTQ-NTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHF 247
Query: 101 ----------------------------LTPGR-KVAAGAVGLAQRCLDEATKYALERKA 131
L PGR VGLA+R L + A +R A
Sbjct: 248 EIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIA 307
Query: 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVD-LGRRNTLYXXXXXXXXXXXXXX 190
F + AH+ VA +A+ I IE RL +KAA +D LG
Sbjct: 308 FKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVS 367
Query: 191 XXTD-AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ 230
D A+QV GG G + DYP+ + ++ ++ +G ++
Sbjct: 368 KIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVH 408
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 105/272 (38%), Gaps = 43/272 (15%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G+ Q+ +L L + AA +E AGSD++ ++T+ GD +++G K+W T
Sbjct: 89 GDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAA 147
Query: 67 VANWYFVLA-------------------RTNPDPKCPASKAFTGFIVERD---------- 97
A+ V R PK +A + D
Sbjct: 148 YADHLVVFGLQEDGSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVL 207
Query: 98 -----------TPGLTPGRK-VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFM 145
L GRK VA G VG+ + C A +A R+ FG P+ HQ VA
Sbjct: 208 AGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGH 267
Query: 146 LADMAIGIEASRLTWMKAAAEVDLGRRNTL-YXXXXXXXXXXXXXXXXTDAVQVFGGNGF 204
+AD+ + + A+ D G + A QV G
Sbjct: 268 IADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGA 327
Query: 205 NSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 236
+ VE+ RDAK+ +I EG++++ R+++++
Sbjct: 328 REGHVVERAYRDAKLMEIIEGSSEMCRVMLAQ 359
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 120/324 (37%), Gaps = 99/324 (30%)
Query: 1 MPVVIAGNEAQQKKYLGRLVE---EPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDE 52
MPV++ + + Q+K+L + EP+ A+ +EP ++ G++T A K G+E
Sbjct: 102 MPVILCDSPSLQEKFLKPFISGEGEPL-ASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160
Query: 53 WILNGQKMWITNGG-----VANWYFVLARTNPDPKCP----------------------- 84
W+++G+K+W +N G A+ V+ R + DP P
Sbjct: 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIAN 220
Query: 85 ----------------------ASKAFTGFIVERDTPGLTPGRK---------------V 107
FT F V + TPG K V
Sbjct: 221 NKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 280
Query: 108 AAGAVGLAQRCLDEATKYALERKAFGVP-IAAHQAVAFMLADMAIGIEASRLTWMKAAA- 165
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 281 GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTT 340
Query: 166 ----------EVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMR 215
++++ + +Y DA++ G + D +L+
Sbjct: 341 LEDEALEWKVKLEMAMQTKIY-------TTDVAVECVIDAMKAVGMKSYAKDMSFPRLLN 393
Query: 216 DAKIYQIYEG------TAQIQRLI 233
+ Y ++EG Q+QR++
Sbjct: 394 EVMCYPLFEGGNIGLRRRQMQRVM 417
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 120/324 (37%), Gaps = 99/324 (30%)
Query: 1 MPVVIAGNEAQQKKYLGRLVE---EPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDE 52
MPV++ + + Q+K+L + EP+ A+ +EP ++ G++T A K G+E
Sbjct: 102 MPVILCDSPSLQEKFLKPFISGEGEPL-ASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160
Query: 53 WILNGQKMWITNGG-----VANWYFVLARTNPDPKCP----------------------- 84
W+++G+K+W +N G A+ V+ R + DP P
Sbjct: 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIAN 220
Query: 85 ----------------------ASKAFTGFIVERDTPGLTPGRK---------------V 107
FT F V + TPG K V
Sbjct: 221 NKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 280
Query: 108 AAGAVGLAQRCLDEATKYALERKAFGVP-IAAHQAVAFMLADMAIGIEASRLTWMKAAA- 165
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 281 GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTT 340
Query: 166 ----------EVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMR 215
++++ + +Y DA++ G + D +L+
Sbjct: 341 LEDEALEWKVKLEMAMQTKIY-------TTDVAVECVIDAMKAVGMKSYAKDMSFPRLLN 393
Query: 216 DAKIYQIYEG------TAQIQRLI 233
+ Y +++G Q+QR++
Sbjct: 394 EVMCYPLFDGGNIGLRRRQMQRVM 417
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 120/324 (37%), Gaps = 99/324 (30%)
Query: 1 MPVVIAGNEAQQKKYLGRLVE---EPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDE 52
MPV++ + + Q+K+L + EP+ A+ +EP ++ G++T A K G+E
Sbjct: 101 MPVILCDSPSLQEKFLKPFISGEGEPL-ASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 159
Query: 53 WILNGQKMWITNGG-----VANWYFVLARTNPDPKCP----------------------- 84
W+++G+K+W +N G A+ V+ R + DP P
Sbjct: 160 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIAN 219
Query: 85 ----------------------ASKAFTGFIVERDTPGLTPGRK---------------V 107
FT F V + TPG K V
Sbjct: 220 NKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 279
Query: 108 AAGAVGLAQRCLDEATKYALERKAFGVP-IAAHQAVAFMLADMAIGIEASRLTWMKAAA- 165
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 280 GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTT 339
Query: 166 ----------EVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMR 215
++++ + +Y DA++ G + D +L+
Sbjct: 340 LEDEALEWKVKLEMAMQTKIY-------TTDVAVECVIDAMKAVGMKSYAKDMSFPRLLN 392
Query: 216 DAKIYQIYEG------TAQIQRLI 233
+ Y +++G Q+QR++
Sbjct: 393 EVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 120/324 (37%), Gaps = 99/324 (30%)
Query: 1 MPVVIAGNEAQQKKYLGRLVE---EPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDE 52
MPV++ + + Q+K+L + EP+ A+ +EP ++ G++T A K G+E
Sbjct: 102 MPVILCDSPSLQEKFLKPFISGEGEPL-ASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160
Query: 53 WILNGQKMWITNGG-----VANWYFVLARTNPDPKCP----------------------- 84
W+++G+K+W +N G A+ V+ R + DP P
Sbjct: 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIAN 220
Query: 85 ----------------------ASKAFTGFIVERDTPGLTPGRK---------------V 107
FT F V + TPG K V
Sbjct: 221 NKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 280
Query: 108 AAGAVGLAQRCLDEATKYALERKAFGVP-IAAHQAVAFMLADMAIGIEASRLTWMKAAA- 165
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 281 GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTT 340
Query: 166 ----------EVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMR 215
++++ + +Y DA++ G + D +L+
Sbjct: 341 LEDEALEWKVKLEMAMQTKIY-------TTDVAVECVIDAMKAVGMKSYAKDMSFPRLLN 393
Query: 216 DAKIYQIYEG------TAQIQRLI 233
+ Y +++G Q+QR++
Sbjct: 394 EVMCYPLFDGGNIGLKRRQMQRVM 417
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 120/324 (37%), Gaps = 99/324 (30%)
Query: 1 MPVVIAGNEAQQKKYLGRLVE---EPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDE 52
MPV++ + + Q+K+L + EP+ A+ +EP ++ G++T A K G+E
Sbjct: 101 MPVILCDSPSLQEKFLKPFISGEGEPL-ASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 159
Query: 53 WILNGQKMWITNGG-----VANWYFVLARTNPDPKCP----------------------- 84
W+++G+K+W +N G A+ V+ R + DP P
Sbjct: 160 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIAN 219
Query: 85 ----------------------ASKAFTGFIVERDTPGLTPGRK---------------V 107
FT F V + TPG K V
Sbjct: 220 NKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMAAALV 279
Query: 108 AAGAVGLAQRCLDEATKYALERKAFGVP-IAAHQAVAFMLADMAIGIEASRLTWMKAAA- 165
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 280 GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTT 339
Query: 166 ----------EVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMR 215
++++ + +Y DA++ G + D +L+
Sbjct: 340 LEDEALEWKVKLEMAMQTKIY-------TTDVAVECVIDAMKAVGMKSYAKDMSFPRLLN 392
Query: 216 DAKIYQIYEG------TAQIQRLI 233
+ Y +++G Q+QR++
Sbjct: 393 EVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 110/293 (37%), Gaps = 83/293 (28%)
Query: 11 QQKKYLGRLV--EEPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDEWILNGQKMWIT 63
Q ++L + E +A+ +EPG ++ G +T A +GDEW++NG+KMW T
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWAT 172
Query: 64 NGGVANWYF-------VLARTNPDP----KCPASKAFTGFIVERD--------------- 97
N A W F V+ R P + P +K + D
Sbjct: 173 N--CAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHV 230
Query: 98 -TPGLTP------------------------GRKVAAGA------------VGLAQRCLD 120
TPG T G KVA GA VGL + D
Sbjct: 231 ATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFD 290
Query: 121 EATKYALERKAFG-VPIAAHQAVAFMLADMAIGIEASR-LTWMKAAAEVDLG------RR 172
A K+A E G VP+ QA A +L+ + I EA+R LTW KAA ++ G RR
Sbjct: 291 AALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTW-KAAHAMENGPGDYDARR 349
Query: 173 NTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEG 225
TD + G + ++ P L+ A + I++G
Sbjct: 350 E--LALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDG 400
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 119/324 (36%), Gaps = 99/324 (30%)
Query: 1 MPVVIAGNEAQQKKYLGRLVE---EPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDE 52
MPV++ + + Q+K+L + EP+ A+ +EP ++ G++T A K G+E
Sbjct: 101 MPVILCDSPSLQEKFLKPFISGEGEPL-ASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 159
Query: 53 WILNGQKMWITNGG-----VANWYFVLARTNPDPKCP----------------------- 84
W+++G+K+W +N G A+ V+ R + DP P
Sbjct: 160 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIAN 219
Query: 85 ----------------------ASKAFTGFIVERDTPGLTPGRK---------------V 107
FT F V + TPG K V
Sbjct: 220 NKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 279
Query: 108 AAGAVGLAQRCLDEATKYALERKAFGVP-IAAHQAVAFMLADMAIGIEASRLTWMKAAA- 165
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 280 GAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTT 339
Query: 166 ----------EVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMR 215
++++ + +Y DA++ G + D +L+
Sbjct: 340 LEDEALEWKVKLEMAMQTKIY-------TTDVAVECVIDAMKAVGMKSYAKDMSFPRLLN 392
Query: 216 DAKIYQIYEG------TAQIQRLI 233
+ Y ++ G Q+QR++
Sbjct: 393 EVMCYPLFNGGNIGLRRRQMQRVM 416
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 111/309 (35%), Gaps = 93/309 (30%)
Query: 2 PVVIAGNEAQQKKYLGRLVE---EPIVAAYCVTEPGAGSDV-----NGVKTKAVKKGDEW 53
PV++ + + Q+K+L + EP+ A+ +EP ++ G++T A K G+EW
Sbjct: 103 PVILCDSPSLQEKFLKPFISGEGEPL-ASLXHSEPNGTANWLQKGGPGLQTTARKVGNEW 161
Query: 54 ILNGQKMWITNGG-----VANWYFVLARTNPDPKCP------------------------ 84
+++G+K+W +N G A+ V+ R + DP P
Sbjct: 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 221
Query: 85 ---------------------ASKAFTGFIVERDTPGLTPGRK---------------VA 108
FT F V + TPG K V
Sbjct: 222 KKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAXSAALVG 281
Query: 109 AGAVGLAQRCLDEATKYALERKAFGVP-IAAHQAVAFMLADMAIGIEASRLTWMKAAA-- 165
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 282 AXAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTL 341
Query: 166 ---------EVDLGRRNTLYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRD 216
+++ + +Y DA + G + D +L+ +
Sbjct: 342 EDEALEWKVKLEXAXQTKIY-------TTDVAVECVIDAXKAVGXKSYAKDXSFPRLLNE 394
Query: 217 AKIYQIYEG 225
Y +++G
Sbjct: 395 VXCYPLFDG 403
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILN-----GQK 59
G E QQKK+L + I+ Y TE G GS+V G++T A K DE++++ K
Sbjct: 114 GTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASK 173
Query: 60 MWITN-GGVANWYFVLARTNPDPKCPASKAFTGFIVE-RDTPGLTPGRKVAAGAVG 113
W G V+ V AR + K GFIV+ R +P + G +G
Sbjct: 174 WWPGGLGKVSTHAVVYARLITNGK---DYGIHGFIVQLRSLEDHSPLPNITVGDIG 226
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 107 VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAE 166
A G+ + +R A +A +R FG P+ + +L+ MA+ +E + A
Sbjct: 302 CALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARA 361
Query: 167 VDLGRRNT--------LYXXXXXXXXXXXXXXXXTDAVQVFGGNGFNSDYPVEKLMRDAK 218
D RR L+ +A++V GG G+ + + +L R+
Sbjct: 362 WD--RRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMP 419
Query: 219 IYQIYEGTAQIQRLIVSRAIIEKA 242
+ I+EG+ I L V R + ++A
Sbjct: 420 VNSIWEGSGNIMCLDVLRVLNKQA 443
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWI-----LNGQK 59
G + QQ+K+L + I+ Y TE G GS+V G++T A + DE++ L K
Sbjct: 133 GTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 192
Query: 60 MWITN-GGVANWYFVLARTNPDPKCPASKAFTGFIVE-RDTPGLTPGRKVAAGAVGL 114
W G V+ V AR D K GFIV+ R P V G +G+
Sbjct: 193 WWPGGLGKVSTHAVVYARLITDGK---DYGVNGFIVQLRSLEDHKPLPGVTVGDIGM 246
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 26 AAYCVTEPGAGSDVNGVKTKAVKKG-DEWILNGQKMWITNGGVANWYFVLARTNPDPKCP 84
AA C GA D GV T+ G W+L+G+K+ ++ +A +FV A+ D
Sbjct: 128 AAVC----GALKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDD---D 180
Query: 85 ASKAFTGFIVERDTPGLT 102
S +V RD PGLT
Sbjct: 181 GSVFLAVPVVHRDAPGLT 198
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 11 QQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 70
++ + L + +VA V G V T W+L+G+K ++ V
Sbjct: 121 ERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTH 180
Query: 71 YFVLARTNPDPKCPASKAFTGFIVERDTPGLT 102
+ + ART+ P +V RDTPG T
Sbjct: 181 FVINARTDGTDGPP---RLASPVVTRDTPGFT 209
>pdb|3NG0|A Chain A, Crystal Structure Of Glutamine Synthetase From
Synechocystis Sp. Pcc 6803
Length = 473
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 22/59 (37%)
Query: 100 GLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
G PG K V D T+ L AFGVPI H +GI+ +L
Sbjct: 173 GYKPGYKQGYFPVAPTDTAQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKL 231
>pdb|1CQQ|A Chain A, Type 2 Rhinovirus 3c Protease With Ag7088 Inhibitor
Length = 180
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 10 AQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWIT 63
+ K+ G V + V +PG V+G+ TK + D + NG K+ IT
Sbjct: 20 TENGKFTGLGVYDRFVVVPTHADPGKEIQVDGITTKVIDSYDLYNKNGIKLEIT 73
>pdb|2XYA|A Chain A, Non-Covalent Inhibtors Of Rhinovirus 3c Protease
Length = 182
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 10 AQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWIT 63
+ K+ G V + V +PG V+G+ TK + D + NG K+ IT
Sbjct: 22 TENGKFTGLGVYDRFVVVPTHADPGKEIQVDGITTKVIDSYDLYNKNGIKLEIT 75
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 84 PASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDE-ATKYALERKAFGVP 135
P S A F E D R AAGA+ L + LD+ AT R FG P
Sbjct: 112 PCSAACPAFTYEPDRDATVVARLRAAGAIVLGKTNLDQFATGLVGTRSPFGAP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,826,121
Number of Sequences: 62578
Number of extensions: 263512
Number of successful extensions: 976
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 106
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)