Query psy13265
Match_columns 245
No_of_seqs 114 out of 1114
Neff 9.5
Searched_HMMs 46136
Date Sat Aug 17 00:21:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0140|consensus 100.0 1.8E-54 3.8E-59 346.3 22.9 243 1-243 118-407 (408)
2 KOG0139|consensus 100.0 2.6E-51 5.7E-56 332.8 17.7 223 1-227 128-397 (398)
3 KOG0141|consensus 100.0 7.1E-48 1.5E-52 308.6 23.6 238 3-241 136-420 (421)
4 PRK12341 putative acyl-CoA deh 100.0 5.2E-46 1.1E-50 323.1 29.3 238 2-241 95-379 (381)
5 TIGR03203 pimD_small pimeloyl- 100.0 2.9E-46 6.4E-51 323.9 26.0 232 3-236 97-374 (378)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.3E-45 2.8E-50 321.2 29.1 234 2-241 104-383 (386)
7 cd01157 MCAD Medium chain acyl 100.0 1.4E-45 3E-50 320.2 28.7 240 2-241 92-378 (378)
8 PRK03354 crotonobetainyl-CoA d 100.0 1.6E-45 3.5E-50 319.9 28.9 239 2-243 96-380 (380)
9 cd01160 LCAD Long chain acyl-C 100.0 6E-45 1.3E-49 315.7 28.6 235 2-238 90-371 (372)
10 cd01162 IBD Isobutyryl-CoA deh 100.0 9.1E-45 2E-49 314.8 28.8 235 3-241 93-375 (375)
11 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 7.6E-45 1.7E-49 314.9 28.2 232 3-237 93-370 (372)
12 PLN02519 isovaleryl-CoA dehydr 100.0 9.8E-45 2.1E-49 317.2 28.9 237 2-241 120-403 (404)
13 cd01156 IVD Isovaleryl-CoA deh 100.0 1.8E-44 4E-49 313.0 29.3 236 2-240 94-376 (376)
14 PLN02526 acyl-coenzyme A oxida 100.0 1.2E-44 2.6E-49 317.3 27.9 234 2-241 120-399 (412)
15 cd01154 AidB Proteins involved 100.0 1.2E-44 2.6E-49 317.5 26.1 234 2-239 122-417 (418)
16 cd01161 VLCAD Very long chain 100.0 7.1E-44 1.5E-48 312.4 28.7 241 2-242 116-408 (409)
17 PLN02636 acyl-coenzyme A oxida 100.0 4.9E-44 1.1E-48 327.0 27.4 242 2-243 151-488 (686)
18 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.1E-43 4.5E-48 308.1 28.7 237 2-239 103-393 (394)
19 PTZ00461 isovaleryl-CoA dehydr 100.0 1.6E-43 3.4E-48 310.2 27.9 233 2-242 129-409 (410)
20 COG1960 CaiA Acyl-CoA dehydrog 100.0 2E-43 4.3E-48 308.2 27.6 240 2-243 103-391 (393)
21 cd01158 SCAD_SBCAD Short chain 100.0 3.4E-43 7.3E-48 304.8 28.3 236 2-240 91-373 (373)
22 PTZ00460 acyl-CoA dehydrogenas 100.0 2.4E-43 5.2E-48 320.6 28.1 239 2-243 105-434 (646)
23 PRK11561 isovaleryl CoA dehydr 100.0 4.2E-43 9.1E-48 312.1 27.6 230 2-240 143-441 (538)
24 PRK09463 fadE acyl-CoA dehydro 100.0 6.3E-43 1.4E-47 320.8 29.4 233 2-234 171-466 (777)
25 cd00567 ACAD Acyl-CoA dehydrog 100.0 1E-42 2.2E-47 296.6 28.2 233 2-236 47-327 (327)
26 PLN02312 acyl-CoA oxidase 100.0 8E-43 1.7E-47 318.4 28.0 239 2-243 163-490 (680)
27 TIGR03204 pimC_large pimeloyl- 100.0 5.1E-42 1.1E-46 299.1 28.4 237 2-240 99-394 (395)
28 PLN02876 acyl-CoA dehydrogenas 100.0 3.9E-42 8.5E-47 323.3 29.6 238 2-241 528-819 (822)
29 cd01152 ACAD_fadE6_17_26 Putat 100.0 3.4E-42 7.3E-47 299.2 25.9 237 2-240 95-380 (380)
30 PRK13026 acyl-CoA dehydrogenas 100.0 6.3E-42 1.4E-46 313.3 27.6 230 2-234 170-465 (774)
31 PTZ00456 acyl-CoA dehydrogenas 100.0 6.4E-42 1.4E-46 310.5 27.2 236 2-239 159-479 (622)
32 cd01153 ACAD_fadE5 Putative ac 100.0 1.9E-41 4.2E-46 296.7 26.5 235 2-238 95-406 (407)
33 KOG0137|consensus 100.0 1.2E-41 2.5E-46 293.0 22.9 240 3-242 171-462 (634)
34 PLN02443 acyl-coenzyme A oxida 100.0 1.1E-40 2.4E-45 303.7 28.0 239 2-243 109-443 (664)
35 cd01150 AXO Peroxisomal acyl-C 100.0 9.7E-41 2.1E-45 303.5 25.4 240 2-244 112-448 (610)
36 KOG0138|consensus 100.0 2.5E-39 5.4E-44 258.9 21.2 235 2-242 146-428 (432)
37 KOG1469|consensus 100.0 8.4E-40 1.8E-44 258.1 16.2 240 3-243 92-385 (392)
38 cd01163 DszC Dibenzothiophene 100.0 5.9E-38 1.3E-42 272.4 23.0 228 2-239 82-372 (377)
39 PTZ00457 acyl-CoA dehydrogenas 100.0 8.8E-35 1.9E-39 257.4 24.1 209 2-231 112-362 (520)
40 cd01159 NcnH Naphthocyclinone 100.0 1.4E-34 3.1E-39 250.5 17.9 219 4-240 84-370 (370)
41 KOG0135|consensus 99.9 2.5E-26 5.4E-31 197.1 17.4 239 2-244 135-468 (661)
42 KOG0136|consensus 99.9 1.6E-24 3.4E-29 189.7 17.4 239 2-243 121-451 (670)
43 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.7E-22 3.7E-27 153.1 16.4 133 107-239 18-150 (150)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.9 2.1E-21 4.5E-26 171.7 19.0 193 10-205 127-390 (477)
45 PF08028 Acyl-CoA_dh_2: Acyl-C 99.8 1.2E-18 2.6E-23 129.7 13.2 121 107-227 3-133 (134)
46 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 5.8E-17 1.3E-21 100.0 6.5 52 27-78 1-52 (52)
47 COG2368 Aromatic ring hydroxyl 99.4 3.4E-11 7.4E-16 103.8 17.6 193 10-205 131-398 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.2 8.8E-10 1.9E-14 98.0 18.2 185 10-201 136-398 (519)
49 PF11794 HpaB_N: 4-hydroxyphen 98.4 1.3E-06 2.7E-11 71.7 8.4 95 10-106 123-224 (264)
50 PF03241 HpaB: 4-hydroxyphenyl 96.8 0.062 1.3E-06 42.8 13.4 71 135-205 43-118 (205)
51 PTZ00457 acyl-CoA dehydrogenas 94.1 1.5 3.2E-05 40.1 12.7 70 132-201 429-499 (520)
52 KOG0137|consensus 89.1 10 0.00023 34.8 12.0 71 131-201 532-603 (634)
53 PRK09463 fadE acyl-CoA dehydro 60.7 1.6E+02 0.0035 28.6 11.6 100 133-239 560-661 (777)
54 PF05428 CRF-BP: Corticotropin 28.3 27 0.00058 29.3 0.8 10 51-60 114-123 (311)
55 PHA02095 hypothetical protein 22.5 54 0.0012 21.2 1.2 14 49-62 25-38 (84)
56 PF15631 Imm-NTF2-2: NTF2 fold 20.1 1.6E+02 0.0034 18.8 3.0 18 43-60 23-40 (66)
57 PF13051 DUF3912: Protein of u 20.0 1.7E+02 0.0037 17.9 3.0 26 53-78 2-27 (68)
No 1
>KOG0140|consensus
Probab=100.00 E-value=1.8e-54 Score=346.25 Aligned_cols=243 Identities=74% Similarity=1.159 Sum_probs=236.3
Q ss_pred ChhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPD 80 (245)
Q Consensus 1 ~~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~ 80 (245)
+||..+|+++||++||+++....++.+.++|||++|||+..+.|+|++.+|.|+|||.|.|+||+.+|+|++|++|++++
T Consensus 118 ~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~~ 197 (408)
T KOG0140|consen 118 WPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDPD 197 (408)
T ss_pred hhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCCC
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHH
Q psy13265 81 PKCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVG 113 (245)
Q Consensus 81 ~~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG 113 (245)
.++|..+++..|+|+.++||++...- ++++++|
T Consensus 198 pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG 277 (408)
T KOG0140|consen 198 PKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALG 277 (408)
T ss_pred CCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhH
Confidence 88889999999999999999987654 8999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy13265 114 LAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193 (245)
Q Consensus 114 ~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~ 193 (245)
.+++++|++.+|+..|++||.+++++|.+|+.|+||+..++.+|.+.++++.++|++.......+++|.++++.|.+++.
T Consensus 278 ~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an~~at 357 (408)
T KOG0140|consen 278 LAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTANQAAT 357 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHhh
Q psy13265 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243 (245)
Q Consensus 194 ~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~ 243 (245)
.++|++||.||.+++|.|+++||++...+.+|++++++..|+|.+|.+++
T Consensus 358 ~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 358 NAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred HHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999876
No 2
>KOG0139|consensus
Probab=100.00 E-value=2.6e-51 Score=332.79 Aligned_cols=223 Identities=44% Similarity=0.735 Sum_probs=211.7
Q ss_pred ChhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPD 80 (245)
Q Consensus 1 ~~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~ 80 (245)
++|..|||++||+.|+|. ..++.+++|++|||+.|||.....|+|+++|+.|++||.|.|+||+.+|++++|++.+++.
T Consensus 128 ~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~ 206 (398)
T KOG0139|consen 128 PLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPS 206 (398)
T ss_pred hHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChh
Confidence 467889999999976665 5677899999999999999999999999999999999999999999999999999999766
Q ss_pred CCCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHH
Q psy13265 81 PKCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVG 113 (245)
Q Consensus 81 ~~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG 113 (245)
.+++++++|+||+++||+.+... ++++.+|
T Consensus 207 ---~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~Aqmlg 283 (398)
T KOG0139|consen 207 ---KGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLG 283 (398)
T ss_pred ---hccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhh
Confidence 38999999999999999977544 8899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy13265 114 LAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193 (245)
Q Consensus 114 ~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~ 193 (245)
.++.++|.++.|+++|.+||+++.|+|.+|++||++.+.++++|+++|+++..-+.+.+...+++|+|.++++.+..+.+
T Consensus 284 laQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~ 363 (398)
T KOG0139|consen 284 LAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTH 363 (398)
T ss_pred hhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCChHHHHHHhhccccccCChH
Q psy13265 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA 227 (245)
Q Consensus 194 ~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~ 227 (245)
+|++..||.||.+++|.+|+|||++...+.+|++
T Consensus 364 qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGts 397 (398)
T KOG0139|consen 364 QCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTS 397 (398)
T ss_pred HHHHHHhcccccccccHHHHhhhceeeeeecCCC
Confidence 9999999999999999999999999999999975
No 3
>KOG0141|consensus
Probab=100.00 E-value=7.1e-48 Score=308.63 Aligned_cols=238 Identities=43% Similarity=0.661 Sum_probs=227.5
Q ss_pred hhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCCC
Q psy13265 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPK 82 (245)
Q Consensus 3 l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~~ 82 (245)
|.+.|++|||++|||.+.+|+-++++++|||+.|||+.++.++|++++++|+|||.|.|+||++.||..+|.|+++...-
T Consensus 136 lvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVyAkTd~~a~ 215 (421)
T KOG0141|consen 136 LVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSAV 215 (421)
T ss_pred HHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEEEecCCCCC
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999986542
Q ss_pred CCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHHH
Q psy13265 83 CPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGLA 115 (245)
Q Consensus 83 ~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~~ 115 (245)
+...|+++|+|++..||.+..+- ++...+|++
T Consensus 216 -~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglm 294 (421)
T KOG0141|consen 216 -PPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLM 294 (421)
T ss_pred -CCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHH
Confidence 46789999999999999876554 789999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy13265 116 QRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDA 195 (245)
Q Consensus 116 ~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~ 195 (245)
+.++|.+..|+++|++||+++..+|.+|..+++|.+.|.++|+++|.++...|++..+..+...++.|++|.+-+++-.+
T Consensus 295 qa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~il~aaE~~tqVald~ 374 (421)
T KOG0141|consen 295 QAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVILYAAEKATQVALDA 374 (421)
T ss_pred HHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhhhhHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 196 VQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 196 ~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
++++||.||..++|..|++||++...+..|++++.+..|+|.+...
T Consensus 375 iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 375 IQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred HhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998754
No 4
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-46 Score=323.15 Aligned_cols=238 Identities=33% Similarity=0.421 Sum_probs=219.8
Q ss_pred hhhhcCCHHHHHHHhhhh-hcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRL-VEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPD 80 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~-~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~ 80 (245)
+|+.+|+++||++||+++ .+|+.++++++|||+.|||...+.+++++++|||+|||+|+|+|++.+||+++|+++++++
T Consensus 95 ~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~~~ 174 (381)
T PRK12341 95 SMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQP 174 (381)
T ss_pred HHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcCCC
Confidence 467799999999999999 5999899999999999999999999999999999999999999999999999999997654
Q ss_pred CCCCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHHH
Q psy13265 81 PKCPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVGL 114 (245)
Q Consensus 81 ~~~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG~ 114 (245)
+ ....++++|+||++.|||++.+. +++.++|+
T Consensus 175 ~--~~~~~~~~~lV~~~~~gv~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~ 252 (381)
T PRK12341 175 K--DPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGF 252 (381)
T ss_pred C--CCCCceEEEEEeCCCCceeecccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 13457899999999999987543 67889999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13265 115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194 (245)
Q Consensus 115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 194 (245)
++++++.+++|++.|+++|+|+.++|.+|++++++.+.++++++++++++...+++.+......++|.++++.+.++++.
T Consensus 253 a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~ 332 (381)
T PRK12341 253 AECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEVIDD 332 (381)
T ss_pred HHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888876665567899999999999999999
Q ss_pred HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
+++++||.||.+++|++|+|||+++..+++|++++++..|++.+++.
T Consensus 333 ~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 333 AIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred HHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998864
No 5
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.9e-46 Score=323.91 Aligned_cols=232 Identities=26% Similarity=0.362 Sum_probs=214.4
Q ss_pred hhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCCC
Q psy13265 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPK 82 (245)
Q Consensus 3 l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~~ 82 (245)
|..+|+++||++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.|+|++..||+++|++++++++
T Consensus 97 l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~~~~- 175 (378)
T TIGR03203 97 LRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTKGAR- 175 (378)
T ss_pred HHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEecCCCC-
Confidence 5568999999999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCeEEEEEeCCCCCcccchh--------------------------------------------hhhhhHHHHHHH
Q psy13265 83 CPASKAFTGFIVERDTPGLTPGRK--------------------------------------------VAAGAVGLAQRC 118 (245)
Q Consensus 83 ~~~~~~~~~f~V~~~~~Gv~~~~~--------------------------------------------~~~~~lG~~~~a 118 (245)
++++++++|+||++.|||++.+. +++.++|+++++
T Consensus 176 -~~~~g~~~flV~~~~~Gv~~~~~~~~~g~~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~a 254 (378)
T TIGR03203 176 -RDRTGIGVFLVPAGAKGVTIKGYPTQDGLHAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDES 254 (378)
T ss_pred -CCCCceEEEEEECCCCCceeccccccCCCceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24568999999999999987552 578899999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHHHHHHHHH
Q psy13265 119 LDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR--RNTLYASVAKALAADVANKCATDAV 196 (245)
Q Consensus 119 l~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~--~~~~~~~~~K~~~~~~~~~~~~~~~ 196 (245)
++.+++|++.|++||+|+.++|.+|+++++|.+.++++++++++++...+... +....++++|.++++.+.++++.++
T Consensus 255 l~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a~~va~~ai 334 (378)
T TIGR03203 255 LKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQSI 334 (378)
T ss_pred HHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776432 3345789999999999999999999
Q ss_pred HhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHH
Q psy13265 197 QVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 236 (245)
Q Consensus 197 ~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~ 236 (245)
+++||.||.+++|++++|||++...+.+|++++++..|+.
T Consensus 335 qi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 335 QLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.3e-45 Score=321.21 Aligned_cols=234 Identities=36% Similarity=0.577 Sum_probs=219.3
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|..+++++||++|++++++|++++++++|||+.|||+.++.+++++++|||+|||+|.|+|++..||+++|+++++++
T Consensus 104 ~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~~~- 182 (386)
T cd01151 104 PIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDET- 182 (386)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEECCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVGLA 115 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG~~ 115 (245)
.++++|+||++.|||++.+. +++.++|++
T Consensus 183 -----~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~~~aa~~lG~a 257 (386)
T cd01151 183 -----GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARYGIAWGALGAA 257 (386)
T ss_pred -----CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999988665 667889999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy13265 116 QRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDA 195 (245)
Q Consensus 116 ~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~ 195 (245)
+++++.+++|+++|++||+++.++|.+|++++++..+++++++++++++...+.+........++|.++++.+.++++.+
T Consensus 258 ~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~~~a~~~~~~a 337 (386)
T cd01151 258 EDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTA 337 (386)
T ss_pred HHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988765555678999999999999999999
Q ss_pred HHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 196 VQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 196 ~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
++++||.||.+++|++|+|||+++..+++|++++++..|++.+|+.
T Consensus 338 ~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 338 REMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred HHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999874
No 7
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.4e-45 Score=320.24 Aligned_cols=240 Identities=78% Similarity=1.229 Sum_probs=220.0
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+++.+++++||++||+++.+|+.++++++|||+.|+|...+.+++++++|||+|||+|+|+|++.+||+++|++++++++
T Consensus 92 ~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~ 171 (378)
T cd01157 92 PVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 171 (378)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEeCCcc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999986543
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGL 114 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~ 114 (245)
+.+.+.++++|+||++.|||++.+. +++.++|+
T Consensus 172 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~ 251 (378)
T cd01157 172 KCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGL 251 (378)
T ss_pred cCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHH
Confidence 2123467899999999999987654 57789999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13265 115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194 (245)
Q Consensus 115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 194 (245)
++++++.+++|++.|++||+++.++|.+|++++++..+++++++++++++...+.+........++|.++++.+.++++.
T Consensus 252 a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~~~~~~ 331 (378)
T cd01157 252 AQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATD 331 (378)
T ss_pred HHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888776544556789999999999999999
Q ss_pred HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
+++++||.||.+++|++|+|||++...+++|++++++..|++.++++
T Consensus 332 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 332 AVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred HHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998763
No 8
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-45 Score=319.94 Aligned_cols=239 Identities=27% Similarity=0.422 Sum_probs=220.4
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|..+++++||++||+++++|+.++++++|||+.|||..++.|++++++|||+|||+|+|+|++.+|||++|+++++.++
T Consensus 96 ~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~~~~~ 175 (380)
T PRK03354 96 TFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASP 175 (380)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999975332
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVGLA 115 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG~~ 115 (245)
+..++++|+||++.|||++.+. +++.++|++
T Consensus 176 ---~~~~~~~~lv~~~~~gv~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a 252 (380)
T PRK03354 176 ---DKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTA 252 (380)
T ss_pred ---CCCceeEEEEECCCCceEeccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999977543 567889999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy13265 116 QRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDA 195 (245)
Q Consensus 116 ~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~ 195 (245)
+++++.+++|++.|++||+++.++|.+|+++++|...++++++++++++...++.........++|.++++.+.++++.+
T Consensus 253 ~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~~ 332 (380)
T PRK03354 253 MCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSA 332 (380)
T ss_pred HHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888765555678999999999999999999
Q ss_pred HHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHhh
Q psy13265 196 VQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243 (245)
Q Consensus 196 ~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~ 243 (245)
++++|+.||.+++|++|+|||+++..+++|++++++..|++.+++.++
T Consensus 333 ~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 380 (380)
T PRK03354 333 MQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR 380 (380)
T ss_pred HHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999987764
No 9
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=6e-45 Score=315.65 Aligned_cols=235 Identities=38% Similarity=0.613 Sum_probs=218.1
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
++..+++++||++||+++.+|+.++++++|||+.|||...+.+++++++|||+|||+|+|+|++.+||+++|++++++++
T Consensus 90 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~~ 169 (372)
T cd01160 90 YITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEA 169 (372)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeCCCC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999987543
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGL 114 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~ 114 (245)
+.+.++++|+||++.||+++.+. +++.++|+
T Consensus 170 --~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~ 247 (372)
T cd01160 170 --RGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAA 247 (372)
T ss_pred --CCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 24567899999999999998664 57789999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13265 115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194 (245)
Q Consensus 115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 194 (245)
++++++.+++|++.|++||+++.++|.+|++++++..++++++++++.++...+.+......+.++|.++++.+.++++.
T Consensus 248 a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~ 327 (372)
T cd01160 248 AEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAYE 327 (372)
T ss_pred HHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888876555567899999999999999999
Q ss_pred HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHH
Q psy13265 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238 (245)
Q Consensus 195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~ 238 (245)
+++++||.||.+++|++|+|||+++..+++|++++++.+|++.+
T Consensus 328 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 328 CVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999875
No 10
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=9.1e-45 Score=314.77 Aligned_cols=235 Identities=42% Similarity=0.705 Sum_probs=217.5
Q ss_pred hhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCCC
Q psy13265 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPK 82 (245)
Q Consensus 3 l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~~ 82 (245)
+..+|+++||++|++++.+|+.++++++|||+.|+|...+.+++++++|||+|||+|+|+|++.+||+++|+++++++
T Consensus 93 l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~~~~-- 170 (375)
T cd01162 93 IDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGE-- 170 (375)
T ss_pred HHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEecCC--
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred CCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHHH
Q psy13265 83 CPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGLA 115 (245)
Q Consensus 83 ~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~~ 115 (245)
...++++|+||++.|||++.+. +++.++|++
T Consensus 171 --~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a 248 (375)
T cd01162 171 --GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAA 248 (375)
T ss_pred --CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356889999999999988654 468899999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHH
Q psy13265 116 QRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN-TLYASVAKALAADVANKCATD 194 (245)
Q Consensus 116 ~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~-~~~~~~~K~~~~~~~~~~~~~ 194 (245)
+++++.+++|+++|++||+|+.++|.+|++++++...+++++++++++++.++.+.+. .....++|+++++.+.++++.
T Consensus 249 ~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~ 328 (375)
T cd01162 249 QAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDVANQ 328 (375)
T ss_pred HHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876433 345788999999999999999
Q ss_pred HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
+++++||.||.+++|++|+|||+++..+++|++++++..|++.++++
T Consensus 329 ~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 329 ALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR 375 (375)
T ss_pred HHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998764
No 11
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=7.6e-45 Score=314.95 Aligned_cols=232 Identities=31% Similarity=0.489 Sum_probs=213.1
Q ss_pred hhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCCC
Q psy13265 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPK 82 (245)
Q Consensus 3 l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~~ 82 (245)
+..+|+++||++||+++.+|+.++++++|||+.|||..++.+++++++|||+|||+|+|+|++.+||+++|++++++++
T Consensus 93 l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~~~~- 171 (372)
T TIGR03207 93 LAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEA- 171 (372)
T ss_pred HHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcCCCC-
Confidence 5568999999999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHHHHH
Q psy13265 83 CPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVGLAQ 116 (245)
Q Consensus 83 ~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG~~~ 116 (245)
....++++|+||++.|||++.+. +++.++|+++
T Consensus 172 -~~~~~~~~~lVp~~~~gv~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~ 250 (372)
T TIGR03207 172 -EGARGISAFLVPMDLPGITRNRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVAR 250 (372)
T ss_pred -CCCCceEEEEEcCCCCCeecCcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13457889999999999976432 4677899999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy13265 117 RCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAV 196 (245)
Q Consensus 117 ~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~ 196 (245)
++++.+.+|+++|++||+|+.++|.+|+++++|.+.++++++++++++..++.+.+......++|.++++.+.++++.++
T Consensus 251 ~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~ 330 (372)
T TIGR03207 251 AALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDVIHQCL 330 (372)
T ss_pred HHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887655556788999999999999999999
Q ss_pred HhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHH
Q psy13265 197 QVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 237 (245)
Q Consensus 197 ~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~ 237 (245)
+++||.||.++ |++|+|||+++..+++|++++++..|++.
T Consensus 331 ~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 331 LTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999 99999999999999999999999999873
No 12
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=9.8e-45 Score=317.24 Aligned_cols=237 Identities=38% Similarity=0.633 Sum_probs=220.5
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|..+++++||++|||++.+|+.++++++|||+.|+|...+.+++++++|||+|||+|+|+|++.+||+++|++++++++
T Consensus 120 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~~~~~ 199 (404)
T PLN02519 120 QLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAA 199 (404)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEeCCCC
Confidence 46778999999999999999999999999999999999899999999999999999999999999999999999986532
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGL 114 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~ 114 (245)
.+.++++|+||++.|||++.+. +++.++|+
T Consensus 200 ---~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~ 276 (404)
T PLN02519 200 ---GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGL 276 (404)
T ss_pred ---CCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999988654 57789999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13265 115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194 (245)
Q Consensus 115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 194 (245)
++++++.+++|++.|.++|+|+.++|.+|.+++++.+.++++++++++++..++.+.........+|.++++.+.++++.
T Consensus 277 a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~ 356 (404)
T PLN02519 277 MQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQ 356 (404)
T ss_pred HHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876655567888999999999999999
Q ss_pred HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
+++++||.||.+++|++|+|||++++.+++|++++++..|++.+|++
T Consensus 357 a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 357 AIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred HHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999998864
No 13
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.8e-44 Score=313.00 Aligned_cols=236 Identities=42% Similarity=0.674 Sum_probs=219.1
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|+.+++++||++|++++.+|++++++++|||+.|+|...+.+++++++|||+|||+|+|+|++.+||+++|++++++++
T Consensus 94 ~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~ 173 (376)
T cd01156 94 QIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSA 173 (376)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEeCCCC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGL 114 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~ 114 (245)
.+.++++|+||++.|||++.+. +++.++|+
T Consensus 174 ---~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~ 250 (376)
T cd01156 174 ---GAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGI 250 (376)
T ss_pred ---CCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHH
Confidence 3457899999999999988654 57789999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13265 115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194 (245)
Q Consensus 115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 194 (245)
++++++.+++|+++|++||+|+.++|.+|++++++..+++++++++++++..++++.........+|.++++.+.++++.
T Consensus 251 a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~~~a~~~~~~ 330 (376)
T cd01156 251 MQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVALD 330 (376)
T ss_pred HHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876655567788999999999999999
Q ss_pred HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHH
Q psy13265 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 240 (245)
Q Consensus 195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 240 (245)
+++++||.||.+++|++|+|||+++..+++|++++++..|++.+++
T Consensus 331 a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 331 AIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999998764
No 14
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.2e-44 Score=317.27 Aligned_cols=234 Identities=34% Similarity=0.504 Sum_probs=218.3
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|..+|+++||++||+++++|+.++++++|||+.|+|..++.+++++++|||+|||+|.|+|++..||+++|+++++++
T Consensus 120 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~- 198 (412)
T PLN02526 120 TIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTT- 198 (412)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCC-
Confidence 3667899999999999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVGLA 115 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG~~ 115 (245)
.++++|+||++.|||++.+. +++.++|++
T Consensus 199 -----~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a 273 (412)
T PLN02526 199 -----NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGIS 273 (412)
T ss_pred -----CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999988665 577889999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy13265 116 QRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDA 195 (245)
Q Consensus 116 ~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~ 195 (245)
+++++.+++|++.|++||+++.++|.+|++++++..+++++++++++++..++.+........++|.++++.+.++++.+
T Consensus 274 ~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a 353 (412)
T PLN02526 274 MGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALG 353 (412)
T ss_pred HHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888765445678899999999999999999
Q ss_pred HHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 196 VQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 196 ~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
++++||.||.+++|++|+|||++...+++|++++++..|++.+|+.
T Consensus 354 ~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 354 RELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999865
No 15
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.2e-44 Score=317.55 Aligned_cols=234 Identities=33% Similarity=0.522 Sum_probs=212.7
Q ss_pred hhhhcCCHHHHHHHhhhhhcCC----ceeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeecccCCCcccEEEEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEP----IVAAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWYFVLAR 76 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~----~~~~~~~tE~~~gsd~~~~~~~a~~~-~~g~~l~G~K~~~s~~~~ad~~lv~a~ 76 (245)
+|..||+++|| +||+++.+|+ +++++++|||+.|||+.++.|+|+++ +|+|+|||+|+|+|++ .||+++|+|+
T Consensus 122 ~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Ar 199 (418)
T cd01154 122 ALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLAR 199 (418)
T ss_pred HHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEE
Confidence 57789988865 6999999997 89999999999999999999999999 8899999999999999 9999999999
Q ss_pred eCCCCCCCCCCCeEEEEEeCCCC-----Ccccchh--------------------------------------------h
Q psy13265 77 TNPDPKCPASKAFTGFIVERDTP-----GLTPGRK--------------------------------------------V 107 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~f~V~~~~~-----Gv~~~~~--------------------------------------------~ 107 (245)
++++. +++.++++|+||++.| ||++.+. +
T Consensus 200 t~~~~--~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~~~~lG~~g~G~~~~~~~l~~~R~~~ 277 (418)
T cd01154 200 PEGAP--AGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISRLDN 277 (418)
T ss_pred CCCCC--CCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcCccccCCCCccHHHHHHHHHHHHHHH
Confidence 87543 3668999999999886 8888654 5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------hhHHHH
Q psy13265 108 AAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN--------TLYASV 179 (245)
Q Consensus 108 ~~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~--------~~~~~~ 179 (245)
++.++|+++++++.+++|+++|++||+++.++|.+|.+|+++.+.++++++++++++..++..... ....++
T Consensus 278 aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~~~~ 357 (418)
T cd01154 278 AVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPV 357 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999988753211 124678
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHH
Q psy13265 180 AKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239 (245)
Q Consensus 180 ~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 239 (245)
+|.++++.+.++++.+++++||.||.+++|++|+|||+++..+++|++++++..+.|.+-
T Consensus 358 aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 358 AKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999998763
No 16
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=7.1e-44 Score=312.37 Aligned_cols=241 Identities=36% Similarity=0.621 Sum_probs=218.8
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCeEEEeeeeecccCCCcccEEEEEEEeCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWYFVLARTNP 79 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~--~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~ 79 (245)
+++.+++++||++||+++.+|+.++++++|||+.|+|...+.++++++ ++||+|||+|+|+|++.+||+++|.++++.
T Consensus 116 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~ 195 (409)
T cd01161 116 GILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEV 195 (409)
T ss_pred HHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCC
Confidence 467789999999999999999999999999999999998999999984 557999999999999999999999999763
Q ss_pred CC-CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhh
Q psy13265 80 DP-KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGA 111 (245)
Q Consensus 80 ~~-~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~ 111 (245)
.+ ..+.+.++++|+||++.|||++.+. +++.+
T Consensus 196 ~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~ 275 (409)
T cd01161 196 KDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAAL 275 (409)
T ss_pred CCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHH
Confidence 11 0012467889999999999988664 57889
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHH
Q psy13265 112 VGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRR--NTLYASVAKALAADVAN 189 (245)
Q Consensus 112 lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~--~~~~~~~~K~~~~~~~~ 189 (245)
+|+++++++.+++|++.|++||+++.++|.+|++++++.++++++++++++++..++.... ....++++|.++++.+.
T Consensus 276 lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a~~~a~ 355 (409)
T cd01161 276 IGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAW 355 (409)
T ss_pred HHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887653 34578999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHh
Q psy13265 190 KCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKA 242 (245)
Q Consensus 190 ~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~ 242 (245)
++++.+++++||.||.+++|++|+|||+++..+++|++++++..|++.+|+++
T Consensus 356 ~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~~ 408 (409)
T cd01161 356 LVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQHA 408 (409)
T ss_pred HHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999999999999998764
No 17
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.9e-44 Score=327.05 Aligned_cols=242 Identities=24% Similarity=0.338 Sum_probs=213.9
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeecccCCCc-ccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNGGV-ANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~--~~g~~l~-----G~K~~~s~~~~-ad~~lv 73 (245)
+|..+||++||++|||++.+|+.++||++|||++|||+..++|+|+++ +|+|+|| |.|+|++++.. ||+++|
T Consensus 151 ~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV 230 (686)
T PLN02636 151 SVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATV 230 (686)
T ss_pred HHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEE
Confidence 577899999999999999999999999999999999999999999988 7899999 99999999976 999999
Q ss_pred EEEeCCCCC---CCCCCCeEEEEEeCC-------CCCcccchh-------------------------------------
Q psy13265 74 LARTNPDPK---CPASKAFTGFIVERD-------TPGLTPGRK------------------------------------- 106 (245)
Q Consensus 74 ~a~~~~~~~---~~~~~~~~~f~V~~~-------~~Gv~~~~~------------------------------------- 106 (245)
+|+++.+++ .+++.|+++|+||.+ .|||++.+.
T Consensus 231 ~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G 310 (686)
T PLN02636 231 FARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDG 310 (686)
T ss_pred EEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCC
Confidence 999863210 013679999999987 599988664
Q ss_pred --------------------------hhhhhHHHHHHHHHHHHHHHHHhhhcCCC------CcccHHHHHHHHHHHHHHH
Q psy13265 107 --------------------------VAAGAVGLAQRCLDEATKYALERKAFGVP------IAAHQAVAFMLADMAIGIE 154 (245)
Q Consensus 107 --------------------------~~~~~lG~~~~al~~~~~~~~~r~~~g~~------~~~~~~~q~~lae~~~~l~ 154 (245)
+++.++|+++++++++++|+..|++||.| +.++|.+|.+|+++.+.++
T Consensus 311 ~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~ 390 (686)
T PLN02636 311 KYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTY 390 (686)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999988 9999999999999999999
Q ss_pred HHH----HHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCC
Q psy13265 155 ASR----LTWMKAAAEVDLGR-----RNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEG 225 (245)
Q Consensus 155 ~~~----al~~~~~~~~~~~~-----~~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g 225 (245)
+++ .+++.+....+.+. +....++++|.++++.+.++++.|+++|||+||..+++++++|||.+...+.+|
T Consensus 391 a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG 470 (686)
T PLN02636 391 AFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEG 470 (686)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecC
Confidence 965 55555554443332 234468999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy13265 226 TAQIQRLIVSRAIIEKAK 243 (245)
Q Consensus 226 ~~~~~~~~i~~~~l~~~~ 243 (245)
++++++.+|++.+|+.+.
T Consensus 471 ~n~Vl~~~iAr~ll~~~~ 488 (686)
T PLN02636 471 DNTVLLQQVAADLLKQYK 488 (686)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999998754
No 18
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.1e-43 Score=308.06 Aligned_cols=237 Identities=30% Similarity=0.466 Sum_probs=214.7
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCC-CCCCCCCceeEEEEeCCeEEEeeeeecccCCCc--ccEEEEEEEeC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWYFVLARTN 78 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~-~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~--ad~~lv~a~~~ 78 (245)
+|..+++++||++||+++.+|+.++++++|||+ .|+|...+.+++++++|||+|||+|+|+|++.+ +|+++|+++++
T Consensus 103 ~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~ 182 (394)
T cd01155 103 VLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRTD 182 (394)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEeC
Confidence 366789999999999999999999999999997 678988899999999999999999999999965 78999999976
Q ss_pred CCCCCCCCCCeEEEEEeCCCCCcccchh-------------------------------------------------hhh
Q psy13265 79 PDPKCPASKAFTGFIVERDTPGLTPGRK-------------------------------------------------VAA 109 (245)
Q Consensus 79 ~~~~~~~~~~~~~f~V~~~~~Gv~~~~~-------------------------------------------------~~~ 109 (245)
+++. +.+.++++|+||++.||+++.+. .++
T Consensus 183 ~~~~-~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a 261 (394)
T cd01155 183 PDGA-PRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCM 261 (394)
T ss_pred CCcC-CCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHH
Confidence 4321 24467899999999999988543 357
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHH
Q psy13265 110 GAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRR--NTLYASVAKALAADV 187 (245)
Q Consensus 110 ~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~--~~~~~~~~K~~~~~~ 187 (245)
.++|+++++++.+++|++.|++||+|+.++|.+|++++++.+.++++++++++++..++.... .....+++|.++++.
T Consensus 262 ~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~~~aK~~~~~~ 341 (394)
T cd01155 262 RLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRM 341 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999998886432 345789999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHH
Q psy13265 188 ANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239 (245)
Q Consensus 188 ~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 239 (245)
+.++++.+++++||.||.+++|++|+|||+++..+++|++++++..|++.++
T Consensus 342 a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 342 ALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred HHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999875
No 19
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-43 Score=310.22 Aligned_cols=233 Identities=37% Similarity=0.605 Sum_probs=215.2
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCC-eEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVANWYFVLARTNPD 80 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~-g~~l~G~K~~~s~~~~ad~~lv~a~~~~~ 80 (245)
+++.+++++||++||+++.+|++++++++|||+.|||...+.|+++++++ ||+|||+|+|+|++..||+++|++++++
T Consensus 129 ~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~~~- 207 (410)
T PTZ00461 129 NFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKVDG- 207 (410)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEeCC-
Confidence 35668999999999999999999999999999999999999999998764 7999999999999999999999998642
Q ss_pred CCCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHH
Q psy13265 81 PKCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVG 113 (245)
Q Consensus 81 ~~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG 113 (245)
++++|+||++.|||++.+. +++.++|
T Consensus 208 -------~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G 280 (410)
T PTZ00461 208 -------KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVG 280 (410)
T ss_pred -------ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999988664 5788999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy13265 114 LAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193 (245)
Q Consensus 114 ~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~ 193 (245)
+++++++.+++|++.|++||+++.++|.+|++++++...+++++++++.++..++..........++|.++++.+.++++
T Consensus 281 ~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~v~~ 360 (410)
T PTZ00461 281 IAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVAD 360 (410)
T ss_pred HHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988876554455778899999999999999
Q ss_pred HHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHh
Q psy13265 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKA 242 (245)
Q Consensus 194 ~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~ 242 (245)
.+++++||.||.+++|++|+|||++...+.+|++++++..|++.+++..
T Consensus 361 ~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~~ 409 (410)
T PTZ00461 361 SAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKGL 409 (410)
T ss_pred HHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999887753
No 20
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2e-43 Score=308.24 Aligned_cols=240 Identities=46% Similarity=0.780 Sum_probs=220.9
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCce-eEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVK-TKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPD 80 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~-~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~ 80 (245)
++..+|+++||++|||++..|++++|+++|||++|||..... |++++.+|+|+|||+|+|+|++++||+++|+++++++
T Consensus 103 ~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~ 182 (393)
T COG1960 103 TILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPA 182 (393)
T ss_pred HHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEcCCc
Confidence 345689999999999999999999999999999999998877 7777767779999999999999999999999999865
Q ss_pred CCCCCCCCeEEEEEeCC-CCCcccchh-----------------------------------------------hhhhhH
Q psy13265 81 PKCPASKAFTGFIVERD-TPGLTPGRK-----------------------------------------------VAAGAV 112 (245)
Q Consensus 81 ~~~~~~~~~~~f~V~~~-~~Gv~~~~~-----------------------------------------------~~~~~l 112 (245)
+ +.++++++|+||++ .||+++.+. +++.++
T Consensus 183 ~--~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~ 260 (393)
T COG1960 183 P--GKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQAL 260 (393)
T ss_pred c--cccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHH
Confidence 4 47889999999999 599988432 567899
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q psy13265 113 GLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCA 192 (245)
Q Consensus 113 G~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~ 192 (245)
|+++++++.+++|++.|++|++++.++|.+|.+++++..+++++++++++++...+........+.++|.++++.+.+++
T Consensus 261 G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK~~a~~~~~~~~ 340 (393)
T COG1960 261 GIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFATEAALEVA 340 (393)
T ss_pred HHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888765444789999999999999999
Q ss_pred HHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHhh
Q psy13265 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243 (245)
Q Consensus 193 ~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~ 243 (245)
+.+++++||.||..++|++|+|||++...+++|++++++..+++.+++...
T Consensus 341 ~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~~ 391 (393)
T COG1960 341 DEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLPA 391 (393)
T ss_pred HHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999998754
No 21
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=3.4e-43 Score=304.77 Aligned_cols=236 Identities=52% Similarity=0.834 Sum_probs=219.3
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+++.+++++|+++|++++.+|+.++++++|||+.|+|...+++++++++|||+|||+|.|+|++.+||+++|+++.+++.
T Consensus 91 ~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~~~~~ 170 (373)
T cd01158 91 PIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSK 170 (373)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCC
Confidence 35779999999999999999999999999999999998889999999999999999999999999999999999875432
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGL 114 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~ 114 (245)
+..++++|+||++.|||++.+. +++.++|+
T Consensus 171 ---~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~ 247 (373)
T cd01158 171 ---GYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGI 247 (373)
T ss_pred ---CCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999998764 56789999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13265 115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194 (245)
Q Consensus 115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 194 (245)
++++++.+++|+++|++||.++.++|.+|++++++...+++++++++.++..++.+.+......++|.++++.+.++++.
T Consensus 248 a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~ 327 (373)
T cd01158 248 AQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMRVTTD 327 (373)
T ss_pred HHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876655567899999999999999999
Q ss_pred HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHH
Q psy13265 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 240 (245)
Q Consensus 195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 240 (245)
+++++|+.||.+++|++|+|||+++..+++|++++++..|++.+|+
T Consensus 328 ~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 328 AVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999875
No 22
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-43 Score=320.63 Aligned_cols=239 Identities=23% Similarity=0.302 Sum_probs=215.2
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeecccC-CCcccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITN-GGVANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~--~~g~~l~-----G~K~~~s~-~~~ad~~lv 73 (245)
+|..+||++||++|||++.+|+.++|+++|||++|||+.+++|+|+.+ +|+|+|| |+|+|+++ +..||+++|
T Consensus 105 ~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV 184 (646)
T PTZ00460 105 AFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALV 184 (646)
T ss_pred HHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEE
Confidence 566799999999999999999999999999999999999999999985 6789998 99999997 688999999
Q ss_pred EEEeCCCCCCCCCCCeEEEEEeCC-------CCCcccchh----------------------------------------
Q psy13265 74 LARTNPDPKCPASKAFTGFIVERD-------TPGLTPGRK---------------------------------------- 106 (245)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~f~V~~~-------~~Gv~~~~~---------------------------------------- 106 (245)
+|++..++ ++.|+++|+||.+ .|||++.+.
T Consensus 185 ~Arl~~~~---~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~ 261 (646)
T PTZ00460 185 YAKLIVNG---KNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVE 261 (646)
T ss_pred EEEECcCC---CCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccc
Confidence 99987543 4578999999943 499988654
Q ss_pred ------------------hhhhhHHHHHHHHHHHHHHHHHhhhcCC------CCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13265 107 ------------------VAAGAVGLAQRCLDEATKYALERKAFGV------PIAAHQAVAFMLADMAIGIEASRLTWMK 162 (245)
Q Consensus 107 ------------------~~~~~lG~~~~al~~~~~~~~~r~~~g~------~~~~~~~~q~~lae~~~~l~~~~al~~~ 162 (245)
+++.++|+++++++.+++|++.|++||. |++++|.+|++|+++.+.+++++.++++
T Consensus 262 ~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~ 341 (646)
T PTZ00460 262 RQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLK 341 (646)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445779999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHHhcC------CC------chhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHH
Q psy13265 163 AAAEVDLG------RR------NTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ 230 (245)
Q Consensus 163 ~~~~~~~~------~~------~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~ 230 (245)
+...++.. .+ ....++++|.++++.+.++++.|+++|||+||..+++++++|||++...+.+|+++++
T Consensus 342 a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl 421 (646)
T PTZ00460 342 IKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIM 421 (646)
T ss_pred HHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHH
Confidence 88877642 11 1346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy13265 231 RLIVSRAIIEKAK 243 (245)
Q Consensus 231 ~~~i~~~~l~~~~ 243 (245)
+.++++.+++.++
T Consensus 422 ~~~iar~ll~~~~ 434 (646)
T PTZ00460 422 YLQLARYLLKQLQ 434 (646)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 23
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-43 Score=312.09 Aligned_cols=230 Identities=25% Similarity=0.374 Sum_probs=209.7
Q ss_pred hhhhcCCHHHHHHHhhhhhcCC-------------ceeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeecccCCCc
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEP-------------IVAAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGV 67 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~-------------~~~~~~~tE~~~gsd~~~~~~~a~~~-~~g~~l~G~K~~~s~~~~ 67 (245)
+++.+++++||++|||++.+|+ +++++++|||+.|||+..+.|+|+++ +|+|+|||.|+|+| ++.
T Consensus 143 ~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~ 221 (538)
T PRK11561 143 PLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQ 221 (538)
T ss_pred HHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chh
Confidence 5678899999999999999997 56799999999999999999999994 67899999999999 689
Q ss_pred ccEEEEEEEeCCCCCCCCCCCeEEEEEeCCCC-----Ccccchh------------------------------------
Q psy13265 68 ANWYFVLARTNPDPKCPASKAFTGFIVERDTP-----GLTPGRK------------------------------------ 106 (245)
Q Consensus 68 ad~~lv~a~~~~~~~~~~~~~~~~f~V~~~~~-----Gv~~~~~------------------------------------ 106 (245)
||+++|+|+++ .++++|+||++.| ||++...
T Consensus 222 AD~~lVlArt~--------~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~~~llG~~g~G~~~i~~ 293 (538)
T PRK11561 222 SDAHLVLAQAK--------GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAIGWLLGEEGEGIRLILK 293 (538)
T ss_pred hCEEEEEEEEC--------CceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCHHHHHCCCCCchHHHHHH
Confidence 99999999985 2689999999988 6877543
Q ss_pred --------hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch----
Q psy13265 107 --------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNT---- 174 (245)
Q Consensus 107 --------~~~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~---- 174 (245)
.+..++|+++++++.+++|++.|++||++++++|.+|+.|++|...++++++++++++..++...+..
T Consensus 294 ~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~ 373 (538)
T PRK11561 294 MGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALW 373 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999998754211
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHH
Q psy13265 175 --LYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 240 (245)
Q Consensus 175 --~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 240 (245)
....++|.++++.+.++++.+|+++||.||.+++|++|+|||++...+++|++++++..+.|.+.+
T Consensus 374 ~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 374 ARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 235689999999999999999999999999999999999999999999999999999999998865
No 24
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-43 Score=320.79 Aligned_cols=233 Identities=24% Similarity=0.339 Sum_probs=208.4
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEE-----EEeCC---eEEEeeeeecccCCCcccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKA-----VKKGD---EWILNGQKMWITNGGVANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a-----~~~~~---g~~l~G~K~~~s~~~~ad~~lv 73 (245)
+|..||+++||++|||++++|+.++|+++|||+.|||...+.+++ +++++ ||+|||+|.|+|+++.||+++|
T Consensus 171 lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V 250 (777)
T PRK09463 171 LLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGL 250 (777)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEE
Confidence 467899999999999999999999999999999999998877543 34555 6999999999999999999999
Q ss_pred EEEe-CCCC--CCCCCCCeEEEEEeCCCCCcccchh--------------------------------------------
Q psy13265 74 LART-NPDP--KCPASKAFTGFIVERDTPGLTPGRK-------------------------------------------- 106 (245)
Q Consensus 74 ~a~~-~~~~--~~~~~~~~~~f~V~~~~~Gv~~~~~-------------------------------------------- 106 (245)
++++ +++. +...+.++++|+||++.|||++.+.
T Consensus 251 ~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~ 330 (777)
T PRK09463 251 AFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVPFQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLS 330 (777)
T ss_pred EEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcccccceEEeeeeecCHHHhcccccccChHHHHHHHHHH
Confidence 9985 3321 0013578999999999999988553
Q ss_pred ------hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q psy13265 107 ------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVA 180 (245)
Q Consensus 107 ------~~~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~ 180 (245)
+++.++|+++++++.+++|++.|++||+|++++|.+|+.+++|...+++++++.+.++..+|.+......++++
T Consensus 331 ~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~A 410 (777)
T PRK09463 331 VGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIA 410 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999988888888776666789999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCC--ChHHHHHHhhccccccCChHHHHHHHH
Q psy13265 181 KALAADVANKCATDAVQVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIV 234 (245)
Q Consensus 181 K~~~~~~~~~~~~~~~~~~G~~~~~~~--~~l~r~~rd~~~~~~~~g~~~~~~~~i 234 (245)
|+++++.+.++++.+|+++||.||+++ +|++|+|||++...+.+|+|++++..|
T Consensus 411 K~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 411 KYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 999999999999999999999999987 999999999999999999999999987
No 25
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1e-42 Score=296.56 Aligned_cols=233 Identities=47% Similarity=0.760 Sum_probs=216.7
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|+.+|+++||++||+.+.+|++++++++|||++|+|...+.+++++++|||+|||+|+|+|++..|||++|++++++++
T Consensus 47 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~ 126 (327)
T cd00567 47 LLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEG 126 (327)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999986542
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGL 114 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~ 114 (245)
++..++.+|+||++.|||++.+. +++.++|+
T Consensus 127 --~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~ 204 (327)
T cd00567 127 --PGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGA 204 (327)
T ss_pred --CCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 24467889999999999998775 67889999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHH
Q psy13265 115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRR-NTLYASVAKALAADVANKCAT 193 (245)
Q Consensus 115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~-~~~~~~~~K~~~~~~~~~~~~ 193 (245)
++++++.+++|++.|.+||.++.++|.+|++++++...+++++++++.++..++.... ......++|.++++.+.++++
T Consensus 205 a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~ 284 (327)
T cd00567 205 ARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREVAD 284 (327)
T ss_pred HHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987654 456789999999999999999
Q ss_pred HHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHH
Q psy13265 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 236 (245)
Q Consensus 194 ~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~ 236 (245)
.+++++||.||.+++|++|+|||+++..+.+|++++++..|++
T Consensus 285 ~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 285 LAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999987763
No 26
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=8e-43 Score=318.44 Aligned_cols=239 Identities=21% Similarity=0.306 Sum_probs=215.4
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeecccCC-CcccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNG-GVANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~--~~g~~l~-----G~K~~~s~~-~~ad~~lv 73 (245)
+|..+||++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |.|+|++++ ..||+++|
T Consensus 163 ~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV 242 (680)
T PLN02312 163 AIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIV 242 (680)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEE
Confidence 567799999999999999999999999999999999999999999987 5789999 799999998 78999999
Q ss_pred EEEeCCCCCCCCCCCeEEEEEe---CC---CCCcccchh-----------------------------------------
Q psy13265 74 LARTNPDPKCPASKAFTGFIVE---RD---TPGLTPGRK----------------------------------------- 106 (245)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~f~V~---~~---~~Gv~~~~~----------------------------------------- 106 (245)
+|++..++ ++.|+++|+|| ++ .|||++.+.
T Consensus 243 ~Arl~~~~---~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~ 319 (680)
T PLN02312 243 FSQLHING---KNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVS 319 (680)
T ss_pred EEEECCCC---CCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceec
Confidence 99987543 46789999998 33 799998664
Q ss_pred ----------------------hhhhhHHHHHHHHHHHHHHHHHhhhcCC----C---CcccHHHHHHHHHHHHHHHHHH
Q psy13265 107 ----------------------VAAGAVGLAQRCLDEATKYALERKAFGV----P---IAAHQAVAFMLADMAIGIEASR 157 (245)
Q Consensus 107 ----------------------~~~~~lG~~~~al~~~~~~~~~r~~~g~----~---~~~~~~~q~~lae~~~~l~~~~ 157 (245)
+++.++|+++++++.+++|++.|++||. + +.++|.+|.+|+++.+.++++.
T Consensus 320 ~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~ 399 (680)
T PLN02312 320 AIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMS 399 (680)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999985 4 9999999999999999999998
Q ss_pred HHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHH
Q psy13265 158 LTWMKAAAEVDLGR-----RNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 232 (245)
Q Consensus 158 al~~~~~~~~~~~~-----~~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~ 232 (245)
.....+...++... +....++++|.++++.+.++++.|+++|||+||..+++++++|||++...+.+|++++++.
T Consensus 400 ~~a~~l~~~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~ 479 (680)
T PLN02312 400 FAANDLKMIYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQ 479 (680)
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHH
Confidence 88877777665432 2345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy13265 233 IVSRAIIEKAK 243 (245)
Q Consensus 233 ~i~~~~l~~~~ 243 (245)
++||.+++.++
T Consensus 480 ~iAr~ll~~~~ 490 (680)
T PLN02312 480 QVSKALLAEYV 490 (680)
T ss_pred HHHHHHHHHHH
Confidence 99999998664
No 27
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=5.1e-42 Score=299.12 Aligned_cols=237 Identities=28% Similarity=0.455 Sum_probs=209.1
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|..+|+++||++|||++++|+.++++++|||+.|||...+.|+++++++||+|||+|.|+|++..||+++|.+++++++
T Consensus 99 ~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~~~~ 178 (395)
T TIGR03204 99 VIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTA 178 (395)
T ss_pred HHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEeCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999976432
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-------------------------------------------hhhhhHHHHHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK-------------------------------------------VAAGAVGLAQRC 118 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-------------------------------------------~~~~~lG~~~~a 118 (245)
+++.++++|+||.+.|||++.+. ++...+|+++++
T Consensus 179 --~~~~g~~~flV~~~~~Gv~~~~~~~~~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa~g~a~~~ 256 (395)
T TIGR03204 179 --KKQMGISFILVDMKSKGITVRPIQTIDGGVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIARVGVSKER 256 (395)
T ss_pred --CCCCCeEEEEEeCCCCCeEecChhhccCCCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13467899999999999887532 223458999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-CchhHHHHHHHHHHHHHHHHHHHHH
Q psy13265 119 LDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVD-LGR-RNTLYASVAKALAADVANKCATDAV 196 (245)
Q Consensus 119 l~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~-~~~-~~~~~~~~~K~~~~~~~~~~~~~~~ 196 (245)
++.+++|++.|++||+|+.++|.+|+++++|..+++++|+++++++.... .+. .....++++|.++++.+.++++.++
T Consensus 257 l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~~~~~~~~~~a~ 336 (395)
T TIGR03204 257 IRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGSEIQQATTELLM 336 (395)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975432 222 2345799999999999999999999
Q ss_pred Hh----------hCCCCCCCC----ChHHHHHHhhccccccCChHHHHHHHHHHHHHH
Q psy13265 197 QV----------FGGNGFNSD----YPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 240 (245)
Q Consensus 197 ~~----------~G~~~~~~~----~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 240 (245)
++ +||.||.++ ++++++|||.+...+.+|++++++..|++.+|+
T Consensus 337 q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 337 EVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred HhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 85 778899865 469999999999999999999999999998864
No 28
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=3.9e-42 Score=323.25 Aligned_cols=238 Identities=28% Similarity=0.412 Sum_probs=217.8
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCC-CCCCCCCceeEEEEeCCeEEEeeeeecccCC--CcccEEEEEEEeC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNG--GVANWYFVLARTN 78 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~-~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~--~~ad~~lv~a~~~ 78 (245)
+|+.+|+++||++||+++++|++++++++|||+ .|||..++.|++++++|||+|||+|+|+|++ ..||+++|+++++
T Consensus 528 ~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~ 607 (822)
T PLN02876 528 VLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTD 607 (822)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecC
Confidence 467799999999999999999999999999997 7899999999999999999999999999999 5699999999986
Q ss_pred CCCCCCCCCCeEEEEEeCCCCCcccchh-------------------------------------------------hhh
Q psy13265 79 PDPKCPASKAFTGFIVERDTPGLTPGRK-------------------------------------------------VAA 109 (245)
Q Consensus 79 ~~~~~~~~~~~~~f~V~~~~~Gv~~~~~-------------------------------------------------~~~ 109 (245)
+++ +.+.++++|+||++.|||++.+. .++
T Consensus 608 ~~~--~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa 685 (822)
T PLN02876 608 FNA--PKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCM 685 (822)
T ss_pred CCC--CCCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHH
Confidence 432 24467899999999999988543 467
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHH
Q psy13265 110 GAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR--RNTLYASVAKALAADV 187 (245)
Q Consensus 110 ~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~--~~~~~~~~~K~~~~~~ 187 (245)
.++|+++++++.+++|+++|++||+++.++|.+|+++++|...++++++++++++..++... .....++++|.++++.
T Consensus 686 ~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~ 765 (822)
T PLN02876 686 RLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNM 765 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999888632 2345789999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265 188 ANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241 (245)
Q Consensus 188 ~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 241 (245)
+.++++.+++++||.||..+++++|+|||+++..+++|++++++..|++.+|++
T Consensus 766 a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 766 ALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred HHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999886
No 29
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.4e-42 Score=299.18 Aligned_cols=237 Identities=28% Similarity=0.478 Sum_probs=214.1
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
.|+.+|+++||++||+++.+|+.++++++|||+.|||..++.+++++++|||+|||+|.|+|++.+||+++|++++++++
T Consensus 95 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~~~~~ 174 (380)
T cd01152 95 TILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEA 174 (380)
T ss_pred HHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEEEEEeCCCc
Confidence 46779999999999999999999999999999999999899999999999999999999999999999999999976533
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh--------------------------------------hh---hhhHHHHHHHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK--------------------------------------VA---AGAVGLAQRCLD 120 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~--------------------------------------~~---~~~lG~~~~al~ 120 (245)
+++.++++|+||++.|||++.+. +. ....|++..+++
T Consensus 175 --~~~~~~~~~lVp~~~~Gv~~~~~~~~~g~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~~~~~~~~~ 252 (380)
T cd01152 175 --PKHRGISILLVDMDSPGVTVRPIRSINGGEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIGGSAATFFE 252 (380)
T ss_pred --cCcCCeEEEEEeCCCCceEeeehhhccCCCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccchhhhHHHH
Confidence 23457899999999999988665 00 112367888888
Q ss_pred HHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy13265 121 EATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFG 200 (245)
Q Consensus 121 ~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~G 200 (245)
.+++|+++|.++|+++.++|.+|+++++|.+++++++++++++++.++........++++|+++++.+.++++.+++++|
T Consensus 253 ~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~~~~~~a~~v~~~a~~i~G 332 (380)
T cd01152 253 LLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELAQELAELALELLG 332 (380)
T ss_pred HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999876555567899999999999999999999999
Q ss_pred CCCCCCC--------ChHHHHHHhhccccccCChHHHHHHHHHHHHHH
Q psy13265 201 GNGFNSD--------YPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 240 (245)
Q Consensus 201 ~~~~~~~--------~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 240 (245)
|.||.++ ++++|++||+++..+++|++++++..|++.+|+
T Consensus 333 g~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 333 TAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred ccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 9999988 699999999999999999999999999998874
No 30
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-42 Score=313.26 Aligned_cols=230 Identities=24% Similarity=0.340 Sum_probs=201.6
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEE-----EeCC---eEEEeeeeecccCCCcccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV-----KKGD---EWILNGQKMWITNGGVANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~-----~~~~---g~~l~G~K~~~s~~~~ad~~lv 73 (245)
+|+.||+++||++|||++++|+.++|+++|||++|||..+++++++ ++++ ||+|||+|.|+|+++.||+++|
T Consensus 170 lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v 249 (774)
T PRK13026 170 LLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGL 249 (774)
T ss_pred HHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEE
Confidence 4678999999999999999999999999999999999988886653 4666 6999999999999999999988
Q ss_pred EEEe-CCCC--CCCCCCCeEEEEEeCCCCCcccchh--------------------------------------------
Q psy13265 74 LART-NPDP--KCPASKAFTGFIVERDTPGLTPGRK-------------------------------------------- 106 (245)
Q Consensus 74 ~a~~-~~~~--~~~~~~~~~~f~V~~~~~Gv~~~~~-------------------------------------------- 106 (245)
.+++ ++++ +.+.+.++++|+||++.|||++.+.
T Consensus 250 ~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~ 329 (774)
T PRK13026 250 AFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFMNGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLS 329 (774)
T ss_pred EEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcccceEEEeeeEccHHHhcCCcccCChHHHHHHHHHH
Confidence 8764 4321 1124578999999999999988543
Q ss_pred ------hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCchhHH
Q psy13265 107 ------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAI---GIEASRLTWMKAAAEVDLGRRNTLYA 177 (245)
Q Consensus 107 ------~~~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~---~l~~~~al~~~~~~~~~~~~~~~~~~ 177 (245)
+++.++|+++++++.+++|++.|++||+|+.++|.+|+.+++|.. .+++++.+++.+. +.+......+
T Consensus 330 ~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~a 406 (774)
T PRK13026 330 AGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVT 406 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHH
Confidence 345678999999999999999999999999999999999999999 6889999888764 4444456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCC--ChHHHHHHhhccccccCChHHHHHHHH
Q psy13265 178 SVAKALAADVANKCATDAVQVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIV 234 (245)
Q Consensus 178 ~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~--~~l~r~~rd~~~~~~~~g~~~~~~~~i 234 (245)
+++|+++++.+.++++.+|+++||.||+++ ++++|+|||++...+.+|++++++..+
T Consensus 407 A~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ 465 (774)
T PRK13026 407 AIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLM 465 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 999999999999999999999999999997 899999999999999999999999743
No 31
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-42 Score=310.46 Aligned_cols=236 Identities=28% Similarity=0.431 Sum_probs=209.0
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCC-eEEEeeeeecccCCCcc----cEEEEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVA----NWYFVLAR 76 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~-g~~l~G~K~~~s~~~~a----d~~lv~a~ 76 (245)
+|..+|+++||++|||++.+|++++++++|||+.|||+..+.|++++++| +|+|||+|.|||++.++ ++++|+||
T Consensus 159 ~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr 238 (622)
T PTZ00456 159 TLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLAR 238 (622)
T ss_pred HHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEEE
Confidence 46779999999999999999999999999999999999999999999987 59999999999999874 58899999
Q ss_pred eCCCCCCCCCCCeEEEEEeCCCC----------Ccccchh----------------------------------------
Q psy13265 77 TNPDPKCPASKAFTGFIVERDTP----------GLTPGRK---------------------------------------- 106 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~f~V~~~~~----------Gv~~~~~---------------------------------------- 106 (245)
+++.+ ++.+++++|+||++.| ||++.+.
T Consensus 239 ~~~~~--~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~~~~llG~~~~Gl~~~~~~mn~ 316 (622)
T PTZ00456 239 LPNSL--PTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENSVGYLIGEPNAGMKQMFTFMNT 316 (622)
T ss_pred ecCCC--CCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeChhHhhcCCCChHHHHHHHHHHH
Confidence 87543 3568999999998753 4543221
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHhhhc------------CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13265 107 ----VAAGAVGLAQRCLDEATKYALERKAF------------GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLG 170 (245)
Q Consensus 107 ----~~~~~lG~~~~al~~~~~~~~~r~~~------------g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~ 170 (245)
+++.++|+++++++.+++|++.|++| +++++++|.+|+.|+++.+.++++|++++.++..++..
T Consensus 317 aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~ 396 (622)
T PTZ00456 317 ARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIH 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57889999999999999999999974 67899999999999999999999999999999988754
Q ss_pred C---C----------chhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHH-HHHHH
Q psy13265 171 R---R----------NTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR-LIVSR 236 (245)
Q Consensus 171 ~---~----------~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~-~~i~~ 236 (245)
. + ......++|.++++.+.++++.+++++||.||.+++|++|+|||++...+++|+++++. ..|+|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~r 476 (622)
T PTZ00456 397 AAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGR 476 (622)
T ss_pred ccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHH
Confidence 2 1 12347799999999999999999999999999999999999999999999999999997 58899
Q ss_pred HHH
Q psy13265 237 AII 239 (245)
Q Consensus 237 ~~l 239 (245)
.++
T Consensus 477 kll 479 (622)
T PTZ00456 477 KVL 479 (622)
T ss_pred Hhh
Confidence 887
No 32
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.9e-41 Score=296.71 Aligned_cols=235 Identities=37% Similarity=0.560 Sum_probs=208.4
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeecccCCCcc----cEEEEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVA----NWYFVLAR 76 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~-~~g~~l~G~K~~~s~~~~a----d~~lv~a~ 76 (245)
+|+.+++++||++|++++.+|+.++++++|||+.|||...+.++++++ +|||+|||+|+|+|++.+| ++++|+++
T Consensus 95 ~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~ 174 (407)
T cd01153 95 TLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLAR 174 (407)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEe
Confidence 467799999999999999999999999999999999999999999998 5689999999999999887 57888998
Q ss_pred eCCCCCCCCCCCeEEEEEeCCC-----CCcccchh--------------------------------------------h
Q psy13265 77 TNPDPKCPASKAFTGFIVERDT-----PGLTPGRK--------------------------------------------V 107 (245)
Q Consensus 77 ~~~~~~~~~~~~~~~f~V~~~~-----~Gv~~~~~--------------------------------------------~ 107 (245)
+++++ +++.++++|+||++. |||++.+. +
T Consensus 175 ~~~~~--~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp~lg~~~~g~~~~~~~l~~~r~~~ 252 (407)
T cd01153 175 SEGAP--PGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGELIGEEGMGLAQMFAMMNGARLGV 252 (407)
T ss_pred CCCCC--CCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEeeeCCCCccHHHHHHHHHHHHHHH
Confidence 75422 244578999999997 89998765 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCC--------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------
Q psy13265 108 AAGAVGLAQRCLDEATKYALERKAFGVP--------IAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN------ 173 (245)
Q Consensus 108 ~~~~lG~~~~al~~~~~~~~~r~~~g~~--------~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~------ 173 (245)
++.++|+++++++.+++|+++|++||+| +.++|.+|..++++.++++++++++++++..++.....
T Consensus 253 aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~ 332 (407)
T cd01153 253 GTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGED 332 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhh
Confidence 7789999999999999999999999988 88899999999999999999999999999988764311
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHH-HHHHHH
Q psy13265 174 --------TLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL-IVSRAI 238 (245)
Q Consensus 174 --------~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~-~i~~~~ 238 (245)
.....++|.++++.+.++++.+++++||.||.+++|++|+|||+++..+++|++++++. .|++.+
T Consensus 333 ~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~~~ 406 (407)
T cd01153 333 RKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRKI 406 (407)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhccc
Confidence 22356899999999999999999999999999999999999999999999999998887 666543
No 33
>KOG0137|consensus
Probab=100.00 E-value=1.2e-41 Score=292.99 Aligned_cols=240 Identities=34% Similarity=0.583 Sum_probs=219.6
Q ss_pred hhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEE--eCCeEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVK--KGDEWILNGQKMWITNGGVANWYFVLARTNPD 80 (245)
Q Consensus 3 l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~--~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~ 80 (245)
|..||+++||++|||++++|+.+.+|++|||.+|||.....++++. +++.|+|||.|.|+|++..||+++|+|+++.+
T Consensus 171 l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~ 250 (634)
T KOG0137|consen 171 LLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVD 250 (634)
T ss_pred eeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccC
Confidence 5679999999999999999999999999999999999999999985 45679999999999999999999999998733
Q ss_pred CC-CCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhH
Q psy13265 81 PK-CPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAV 112 (245)
Q Consensus 81 ~~-~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~l 112 (245)
+. .....++++|+|+++..|++-.+. .++..+
T Consensus 251 ~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~ 330 (634)
T KOG0137|consen 251 PADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALL 330 (634)
T ss_pred CCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHH
Confidence 21 134678999999999999887666 788999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHHH
Q psy13265 113 GLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR--RNTLYASVAKALAADVANK 190 (245)
Q Consensus 113 G~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~--~~~~~~~~~K~~~~~~~~~ 190 (245)
|.++++++.+.+|+..|.++|.++.++..+|+.+++|...++++++++|-....+|+.. +...+.++.|+++.+.+..
T Consensus 331 G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~ 410 (634)
T KOG0137|consen 331 GLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWA 410 (634)
T ss_pred HHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999998888743 3356899999999999999
Q ss_pred HHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHh
Q psy13265 191 CATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKA 242 (245)
Q Consensus 191 ~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~ 242 (245)
+++++++++||+||+++.|++|++||++.+.+++|++++++..|+...+...
T Consensus 411 v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q~a 462 (634)
T KOG0137|consen 411 VVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQHA 462 (634)
T ss_pred HHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998777543
No 34
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.1e-40 Score=303.69 Aligned_cols=239 Identities=24% Similarity=0.296 Sum_probs=211.7
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeecccCC-CcccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNG-GVANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~--~~g~~l~-----G~K~~~s~~-~~ad~~lv 73 (245)
+|..+||++||++|||++.+|+.++|+++|||++|||+..++|+|+.+ +++|+|| |+|+|++++ ..||+++|
T Consensus 109 ~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV 188 (664)
T PLN02443 109 AIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV 188 (664)
T ss_pred HHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEE
Confidence 577899999999999999999999999999999999999999999988 6789998 999999997 68999999
Q ss_pred EEEeCCCCCCCCCCCeEEEEEeCC-------CCCcccchh----------------------------------------
Q psy13265 74 LARTNPDPKCPASKAFTGFIVERD-------TPGLTPGRK---------------------------------------- 106 (245)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~f~V~~~-------~~Gv~~~~~---------------------------------------- 106 (245)
+|++..++ ++.|+++|+||.+ .|||++.+.
T Consensus 189 ~Arl~~~~---~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G 265 (664)
T PLN02443 189 YARLITNG---KDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREG 265 (664)
T ss_pred EEEECCCC---CCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCC
Confidence 99986543 5678999999976 799987431
Q ss_pred ----------------------hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCc-------ccHHHHHHHHHHHHHHHHHH
Q psy13265 107 ----------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIA-------AHQAVAFMLADMAIGIEASR 157 (245)
Q Consensus 107 ----------------------~~~~~lG~~~~al~~~~~~~~~r~~~g~~~~-------~~~~~q~~lae~~~~l~~~~ 157 (245)
+++.++|+++++++++++|+..|++||.++. +++.+|.+++++.+.+++++
T Consensus 266 ~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r 345 (664)
T PLN02443 266 KYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFR 345 (664)
T ss_pred ceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2455789999999999999999999998876 55556999999999999999
Q ss_pred HHHHHHHHHHhc------CCC------chhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCC
Q psy13265 158 LTWMKAAAEVDL------GRR------NTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEG 225 (245)
Q Consensus 158 al~~~~~~~~~~------~~~------~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g 225 (245)
.+.+++...++. ..+ ....++++|.++++.+.++++.|+++|||+||+.++++++++||.....+.+|
T Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EG 425 (664)
T PLN02443 346 FVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEG 425 (664)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecC
Confidence 999988877653 111 11237899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy13265 226 TAQIQRLIVSRAIIEKAK 243 (245)
Q Consensus 226 ~~~~~~~~i~~~~l~~~~ 243 (245)
++++++.++++.+++.++
T Consensus 426 dn~Vl~~~iar~ll~~~~ 443 (664)
T PLN02443 426 DNVVLLLQVARFLMKTVS 443 (664)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
No 35
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=9.7e-41 Score=303.53 Aligned_cols=240 Identities=22% Similarity=0.286 Sum_probs=210.9
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeC--CeEEEe-----eeeecccCCCc-ccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKG--DEWILN-----GQKMWITNGGV-ANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~--~g~~l~-----G~K~~~s~~~~-ad~~lv 73 (245)
+|..+||++||++|||++.+|+.++|+++|||++|||+..++|+|+.++ ++|+|| |.|+|++++.. |++++|
T Consensus 112 ~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV 191 (610)
T cd01150 112 AIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVV 191 (610)
T ss_pred HHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEE
Confidence 5778999999999999999999999999999999999999999999988 899999 99999999865 999999
Q ss_pred EEEeCCCCCCCCCCCeEEEEEeCC-------CCCcccchh----------------------------------------
Q psy13265 74 LARTNPDPKCPASKAFTGFIVERD-------TPGLTPGRK---------------------------------------- 106 (245)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~f~V~~~-------~~Gv~~~~~---------------------------------------- 106 (245)
+|++..++ +..|+++|+||.+ .|||++.+.
T Consensus 192 ~Arl~~~g---~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~ 268 (610)
T cd01150 192 FAQLITPG---KNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYV 268 (610)
T ss_pred EEEeccCC---CCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCcee
Confidence 99986543 4578999999964 399988654
Q ss_pred -----------------------hhhhhHHHHHHHHHHHHHHHHHhhhcCCC-------CcccHHHHHHHHHHHHHHHHH
Q psy13265 107 -----------------------VAAGAVGLAQRCLDEATKYALERKAFGVP-------IAAHQAVAFMLADMAIGIEAS 156 (245)
Q Consensus 107 -----------------------~~~~~lG~~~~al~~~~~~~~~r~~~g~~-------~~~~~~~q~~lae~~~~l~~~ 156 (245)
+++.++|.++++++.+++|++.|++||.+ +.++|.+|.+|+++.+..++.
T Consensus 269 ~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~ 348 (610)
T cd01150 269 SPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAF 348 (610)
T ss_pred cCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999988 999999999999999999987
Q ss_pred HHHHHHHHH-------HHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccC
Q psy13265 157 RLTWMKAAA-------EVDLGR-----RNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYE 224 (245)
Q Consensus 157 ~al~~~~~~-------~~~~~~-----~~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~ 224 (245)
+........ ..+++. +....++++|.++++.+.++++.|+++|||+||..+++++++|||.+...+++
T Consensus 349 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~E 428 (610)
T cd01150 349 HFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYE 428 (610)
T ss_pred HHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhccceeeee
Confidence 754443332 223221 12346889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhc
Q psy13265 225 GTAQIQRLIVSRAIIEKAKN 244 (245)
Q Consensus 225 g~~~~~~~~i~~~~l~~~~~ 244 (245)
|++++++.++++.+++.+.+
T Consensus 429 G~n~vl~~~iar~ll~~~~~ 448 (610)
T cd01150 429 GDNTVLLQQTANYLLKKYAQ 448 (610)
T ss_pred cchHhHHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 36
>KOG0138|consensus
Probab=100.00 E-value=2.5e-39 Score=258.89 Aligned_cols=235 Identities=35% Similarity=0.560 Sum_probs=221.1
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCe--EEEeeeeecccCCCcccEEEEEEEeCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDE--WILNGQKMWITNGGVANWYFVLARTNP 79 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g--~~l~G~K~~~s~~~~ad~~lv~a~~~~ 79 (245)
||..||+++||++|||.+++|++++||++|||++|||+..++|+|+.+.++ |.|||.|.|+++++.||+++|+||...
T Consensus 146 ~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t 225 (432)
T KOG0138|consen 146 PIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCET 225 (432)
T ss_pred hHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEeccc
Confidence 788999999999999999999999999999999999999999999999887 999999999999999999999999874
Q ss_pred CCCCCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHH
Q psy13265 80 DPKCPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVG 113 (245)
Q Consensus 80 ~~~~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG 113 (245)
+ ..+.-|+|+++.+|++.-.. ++...+|
T Consensus 226 ~------n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lG 299 (432)
T KOG0138|consen 226 D------NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALG 299 (432)
T ss_pred C------CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCccccCCchhhhhhhhhheeehhch
Confidence 4 35788999999999755333 7888999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy13265 114 LAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193 (245)
Q Consensus 114 ~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~ 193 (245)
+++.+++.+.+|+..|++||.|++.+|.+|..+++|...+...-..+.+..+..|.+...+..+++.|.+.+--+.+++.
T Consensus 300 ase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr 379 (432)
T KOG0138|consen 300 ASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIAR 379 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred HHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHh
Q psy13265 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKA 242 (245)
Q Consensus 194 ~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~ 242 (245)
++.+..||.|...++...|.+-|+...-..+|+-+++...++|.+.+-.
T Consensus 380 ~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTGia 428 (432)
T KOG0138|consen 380 QARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIA 428 (432)
T ss_pred HHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999987654
No 37
>KOG1469|consensus
Probab=100.00 E-value=8.4e-40 Score=258.06 Aligned_cols=240 Identities=28% Similarity=0.443 Sum_probs=222.6
Q ss_pred hhhcCCHHHHHHHhhhhhcCCceeEEEecCCC-CCCCCCCceeEEEEeCCeEEEeeeeecccCCCc--ccEEEEEEEeCC
Q psy13265 3 VVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWYFVLARTNP 79 (245)
Q Consensus 3 l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~-~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~--ad~~lv~a~~~~ 79 (245)
|.+||++|||.+||.++.+|+...||++|||+ ..||..++++..+++++.|++||+|||+||+.+ +.+.+++.++++
T Consensus 92 l~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~ 171 (392)
T KOG1469|consen 92 LHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDN 171 (392)
T ss_pred hhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCC
Confidence 56799999999999999999999999999999 778999999999999999999999999999876 679999999886
Q ss_pred CCCCCCCCCeEEEEEeCCCCCcccchh-------------------------------------------------hhhh
Q psy13265 80 DPKCPASKAFTGFIVERDTPGLTPGRK-------------------------------------------------VAAG 110 (245)
Q Consensus 80 ~~~~~~~~~~~~f~V~~~~~Gv~~~~~-------------------------------------------------~~~~ 110 (245)
. +.+.+...++.+||+++|||+|.++ .+.-
T Consensus 172 ~-~~~rhkQqSmiLVpM~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMR 250 (392)
T KOG1469|consen 172 T-SASRHKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMR 250 (392)
T ss_pred C-ccchhhcccEEEEecCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHH
Confidence 5 2367889999999999999999887 5778
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHH
Q psy13265 111 AVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN--TLYASVAKALAADVA 188 (245)
Q Consensus 111 ~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~--~~~~~~~K~~~~~~~ 188 (245)
.+|.++++++...+.+.+|..||+++.++..+...|++....++.+|.++.+++..+|...+. ..++.|.|..+...+
T Consensus 251 liG~aERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma 330 (392)
T KOG1469|consen 251 LIGLAERALQLMKERALSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMA 330 (392)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999975543 346899999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHhh
Q psy13265 189 NKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243 (245)
Q Consensus 189 ~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~ 243 (245)
.++++++++.+||.|...+.|+.++|...+++.+..|+++++...|++..+...+
T Consensus 331 ~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~~~a 385 (392)
T KOG1469|consen 331 SKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELRDQA 385 (392)
T ss_pred HHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999998886544
No 38
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=5.9e-38 Score=272.37 Aligned_cols=228 Identities=23% Similarity=0.329 Sum_probs=196.9
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+|..+|+++||++|++++.+|+++ +.+++||++|+ .....+++++++|||+|||+|.|+|++.+|||++|++++++
T Consensus 82 ~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~-- 157 (377)
T cd01163 82 ALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE-- 157 (377)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC--
Confidence 466789999999999999999855 67999998775 56667778888899999999999999999999999998642
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVGLA 115 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG~~ 115 (245)
.+.++|+||++.|||++.++ +++.++|++
T Consensus 158 -----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~~~~l~~aa~~lG~a 232 (377)
T cd01163 158 -----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDRGTLLTAIYQLVLAAVLAGIA 232 (377)
T ss_pred -----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccccccccHHHHHHHHHHHHHHH
Confidence 24678999999999998764 567899999
Q ss_pred HHHHHHHHHHHHHhh-hcCC----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CchhHHH
Q psy13265 116 QRCLDEATKYALERK-AFGV----PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR------------RNTLYAS 178 (245)
Q Consensus 116 ~~al~~~~~~~~~r~-~~g~----~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~------------~~~~~~~ 178 (245)
+++++.+++|+++|+ .++. ++.++|.+|++++++.++++++++++++++..+++.. .....++
T Consensus 233 ~~al~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T cd01163 233 RAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVA 312 (377)
T ss_pred HHHHHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 999999999999995 6664 5789999999999999999999999999999887631 1123578
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHH
Q psy13265 179 VAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239 (245)
Q Consensus 179 ~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 239 (245)
++|.++++.+.++++.+++++|+.||.+++|++|+|||+++..+|.+.+...+ .++...+
T Consensus 313 ~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~~~~~-~~~~~~~ 372 (377)
T cd01163 313 AAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVIYKER-AVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHHHHHH-Hhchhhc
Confidence 99999999999999999999999999999999999999999999999875544 5555443
No 39
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.8e-35 Score=257.40 Aligned_cols=209 Identities=21% Similarity=0.280 Sum_probs=183.4
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWYFVLARTNPD 80 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~-~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~ 80 (245)
+|..+|+++||++|||++++|+.+++++++| +.|||+..+.|+++++ +|+|+|||+|.|+ ++..||+++|+|++++.
T Consensus 112 ~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~ 189 (520)
T PTZ00457 112 LLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQ 189 (520)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCc
Confidence 4567999999999999999999999999998 8999999999999986 5589999999965 89999999999997531
Q ss_pred ---C-CCCCCCCeEEEEEeCCCCCcccchh---------------------------------hhhhhHHHHHHHHHHHH
Q psy13265 81 ---P-KCPASKAFTGFIVERDTPGLTPGRK---------------------------------VAAGAVGLAQRCLDEAT 123 (245)
Q Consensus 81 ---~-~~~~~~~~~~f~V~~~~~Gv~~~~~---------------------------------~~~~~lG~~~~al~~~~ 123 (245)
+ +.....++++|+||++.|||++... +++..+|+++++++.++
T Consensus 190 ~~~~~g~~~~~git~FlV~~dapGVtv~~~eV~FddVP~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av 269 (520)
T PTZ00457 190 TAAEEGATEVSRNSFFICAKDAKGVSVNGDSVVFENTPAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELR 269 (520)
T ss_pred ccccccccCcCceEEEEEECCCCceEEecCEEEECCCCHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0001357999999999999987322 68899999999999999
Q ss_pred HHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHH---HHHHHHHHHHHHhh
Q psy13265 124 KYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR-RNTLYASVAKALAA---DVANKCATDAVQVF 199 (245)
Q Consensus 124 ~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~-~~~~~~~~~K~~~~---~~~~~~~~~~~~~~ 199 (245)
+|++ +|.+|+.+++|.+.++++|++++.++..+|.+. +...+++++|+|++ +.+.++++++++
T Consensus 270 ~ya~-----------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~-- 336 (520)
T PTZ00457 270 GSNA-----------EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP-- 336 (520)
T ss_pred HHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--
Confidence 9986 378999999999999999999999999999874 45778999999999 888888877766
Q ss_pred CCCCCCCCChHHHHHHhhccccccCChHHHHH
Q psy13265 200 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 231 (245)
Q Consensus 200 G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~ 231 (245)
+++|+||++||++.+.+.+|++++++
T Consensus 337 ------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 337 ------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred ------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 89999999999999999999999998
No 40
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.4e-34 Score=250.52 Aligned_cols=219 Identities=19% Similarity=0.207 Sum_probs=184.6
Q ss_pred hhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCCCC
Q psy13265 4 VIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKC 83 (245)
Q Consensus 4 ~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~~~ 83 (245)
..+++++|++.|++.. ++ .+ + | ..++.+++++++|||+|||+|.|+|++.++|+++|.+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~-~~-~~-~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~-- 148 (370)
T cd01159 84 AAFPPEAQEEVWGDGP-DT-LL-A--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDD-- 148 (370)
T ss_pred HhCCHHHHHHHhCCCC-Cc-eE-E--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCC--
Confidence 3468888988887642 11 11 1 1 1235678999999999999999999999999999999975432
Q ss_pred CCCCCeEEEEEeCCCCCcccchh--------------------------------------------------------h
Q psy13265 84 PASKAFTGFIVERDTPGLTPGRK--------------------------------------------------------V 107 (245)
Q Consensus 84 ~~~~~~~~f~V~~~~~Gv~~~~~--------------------------------------------------------~ 107 (245)
.+.++++|+||++ ||++.++ +
T Consensus 149 -~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 225 (370)
T cd01159 149 -GGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSF 225 (370)
T ss_pred -CCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHH
Confidence 4567899999976 6666553 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhc---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C--c---hhH
Q psy13265 108 AAGAVGLAQRCLDEATKYALERKAF---GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR---R--N---TLY 176 (245)
Q Consensus 108 ~~~~lG~~~~al~~~~~~~~~r~~~---g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~---~--~---~~~ 176 (245)
++.++|+++++++.+++|+++|.++ |++++++|.+|++++++.+.++++++++++++..+++.. . . ...
T Consensus 226 aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~ 305 (370)
T cd01159 226 AAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERAR 305 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4568999999999999999999976 678999999999999999999999999999999887531 1 1 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChH-HHHHHHHHHHHHH
Q psy13265 177 ASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA-QIQRLIVSRAIIE 240 (245)
Q Consensus 177 ~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~-~~~~~~i~~~~l~ 240 (245)
+.++|.++++.+.++++.+++++|+.||.+++|++|+|||+++..+|+|++ ++++..|+|.+|+
T Consensus 306 ~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 306 IRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 788999999999999999999999999999999999999999999999999 9999999999875
No 41
>KOG0135|consensus
Probab=99.95 E-value=2.5e-26 Score=197.12 Aligned_cols=239 Identities=23% Similarity=0.365 Sum_probs=209.3
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeecccCCC-cccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNGG-VANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~--~~g~~l~-----G~K~~~s~~~-~ad~~lv 73 (245)
++-.+||+.-++ |+..+-+-+..+||++||.++|||...++|+++-+ .+.|++| ..|.|+.+.. +|++.+|
T Consensus 135 AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavv 213 (661)
T KOG0135|consen 135 AVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVV 213 (661)
T ss_pred HHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEE
Confidence 345689988877 99999999999999999999999999999999977 7789999 6999999964 5899999
Q ss_pred EEEeCCCCCCCCCCCeEEEEEeCCC-------CCcccchh----------------------------------------
Q psy13265 74 LARTNPDPKCPASKAFTGFIVERDT-------PGLTPGRK---------------------------------------- 106 (245)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~f~V~~~~-------~Gv~~~~~---------------------------------------- 106 (245)
+++...++ ...|++.|+||.++ |||.|.|.
T Consensus 214 fa~L~~~g---~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~Yv 290 (661)
T KOG0135|consen 214 FAQLHVPG---QNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYV 290 (661)
T ss_pred EEEeeecC---ccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeee
Confidence 99976554 56899999999553 78999887
Q ss_pred -----------------------hhhhhHHHHHHHHHHHHHHHHHhhhcC-------CCCcccHHHHHHHHHHHHHHHHH
Q psy13265 107 -----------------------VAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQAVAFMLADMAIGIEAS 156 (245)
Q Consensus 107 -----------------------~~~~~lG~~~~al~~~~~~~~~r~~~g-------~~~~~~~~~q~~lae~~~~l~~~ 156 (245)
++..++|.++-++.++++|...|++|| .++.++|..|.+|-...+..++.
T Consensus 291 Ss~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~ 370 (661)
T KOG0135|consen 291 SSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYAL 370 (661)
T ss_pred ccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHH
Confidence 778899999999999999999999998 46889999999999988888888
Q ss_pred HHHHHHHHHHHhc----------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCCh
Q psy13265 157 RLTWMKAAAEVDL----------GRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGT 226 (245)
Q Consensus 157 ~al~~~~~~~~~~----------~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~ 226 (245)
..........+.+ ..+....++..|.+++....++.++|.+.|||+||...+.+..+--|--...+.+|+
T Consensus 371 ~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGD 450 (661)
T KOG0135|consen 371 SFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGD 450 (661)
T ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecC
Confidence 8777766666542 112233577889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy13265 227 AQIQRLIVSRAIIEKAKN 244 (245)
Q Consensus 227 ~~~~~~~i~~~~l~~~~~ 244 (245)
|.++.+++++.+|++++.
T Consensus 451 NnVLlQqvsn~LL~~y~~ 468 (661)
T KOG0135|consen 451 NNVLLQQVSNALLAQYVS 468 (661)
T ss_pred ceeHHHHHHHHHHHHHHH
Confidence 999999999999998863
No 42
>KOG0136|consensus
Probab=99.93 E-value=1.6e-24 Score=189.72 Aligned_cols=239 Identities=23% Similarity=0.270 Sum_probs=204.0
Q ss_pred hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeecccCCCc-ccEEEE
Q psy13265 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNGGV-ANWYFV 73 (245)
Q Consensus 2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~--~~g~~l~-----G~K~~~s~~~~-ad~~lv 73 (245)
+|...||+||.++||++-...++++|+|.||-++|+++..++|+|+-+ .+.|+|| ..|||..+.++ +++.+|
T Consensus 121 ~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV 200 (670)
T KOG0136|consen 121 TLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVV 200 (670)
T ss_pred HhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchhee
Confidence 566799999999999999999999999999999999999999999965 5679998 89999999766 789999
Q ss_pred EEEeCCCCCCCCCCCeEEEEEeCC-------CCCcccchh----------------------------------------
Q psy13265 74 LARTNPDPKCPASKAFTGFIVERD-------TPGLTPGRK---------------------------------------- 106 (245)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~f~V~~~-------~~Gv~~~~~---------------------------------------- 106 (245)
.|++-.++ +..|+..|+||.+ -|||.++|.
T Consensus 201 ~AqL~~~g---k~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv 277 (670)
T KOG0136|consen 201 VAQLITKG---KCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYV 277 (670)
T ss_pred eeeeeecc---cccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhheecCCCccc
Confidence 99987665 6789999999966 379999888
Q ss_pred ------------------hhhhhHHHHHHHHHHHHHHHHHhhhcC-------CCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy13265 107 ------------------VAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQAVAFMLADMAIGIEASRLTWM 161 (245)
Q Consensus 107 ------------------~~~~~lG~~~~al~~~~~~~~~r~~~g-------~~~~~~~~~q~~lae~~~~l~~~~al~~ 161 (245)
+..-..-+.-.|.-++++|...|+++. ..+.|++..|.+|=...++-++.+....
T Consensus 278 ~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~ 357 (670)
T KOG0136|consen 278 KPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGE 357 (670)
T ss_pred cCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHH
Confidence 334444556677788999999998664 4689999999999888888877777666
Q ss_pred HHHHHHh-------cCCC-----chhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHH
Q psy13265 162 KAAAEVD-------LGRR-----NTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQI 229 (245)
Q Consensus 162 ~~~~~~~-------~~~~-----~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~ 229 (245)
...+.+. ++.. ....+.-+|..++..+.+.+++|...|||+||+.-+.|..+|-+.-..-+.+|.|.+
T Consensus 358 ~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~V 437 (670)
T KOG0136|consen 358 ELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTV 437 (670)
T ss_pred HHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeecccee
Confidence 6555553 3321 123578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy13265 230 QRLIVSRAIIEKAK 243 (245)
Q Consensus 230 ~~~~i~~~~l~~~~ 243 (245)
+..++||.|++.+.
T Consensus 438 mlLQ~ARfLmKs~~ 451 (670)
T KOG0136|consen 438 LLLQVARFLVKSYA 451 (670)
T ss_pred ehHHHHHHHHHHHH
Confidence 99999999998764
No 43
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.90 E-value=1.7e-22 Score=153.13 Aligned_cols=133 Identities=43% Similarity=0.694 Sum_probs=129.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy13265 107 VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAAD 186 (245)
Q Consensus 107 ~~~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~ 186 (245)
+++.++|.++++++.+.+|++.|+++|+++.++|.++.+++++...++++++++++++..++.+.....+.+++|+++++
T Consensus 18 ~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~K~~~t~ 97 (150)
T PF00441_consen 18 IAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAGQNDPVEAAIAKYFATE 97 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhccccccccccccccccccccchhhhhccc
Confidence 56779999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHH
Q psy13265 187 VANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239 (245)
Q Consensus 187 ~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 239 (245)
.+.++++.+++++|+.||.+++|++++|||+++..+.+|++++++..|++.+|
T Consensus 98 ~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 98 LAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999986
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.88 E-value=2.1e-21 Score=171.68 Aligned_cols=193 Identities=18% Similarity=0.202 Sum_probs=159.9
Q ss_pred HHHHHHhhhhhcCCceeEEEecCCCCC-----CCCCCce--eEE-EEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 10 AQQKKYLGRLVEEPIVAAYCVTEPGAG-----SDVNGVK--TKA-VKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 10 ~~k~~~l~~~~~g~~~~~~~~tE~~~g-----sd~~~~~--~~a-~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+--++|+..+.+.++..+.+++.|... +...+.. ..+ +++++||+|||.|.|+|++ .||+++|+++++..+
T Consensus 127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~ 205 (477)
T TIGR02309 127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA 205 (477)
T ss_pred HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence 345789999999999999999999621 1112222 234 4668899999999999996 999999999876542
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh-------------------------------------------------------
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK------------------------------------------------------- 106 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~------------------------------------------------------- 106 (245)
+..+.+..+.|+||+++||+++...
T Consensus 206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~~ 285 (477)
T TIGR02309 206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATGA 285 (477)
T ss_pred ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHHH
Confidence 1001123789999999999987654
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CchhHHH
Q psy13265 107 ---VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR-----RNTLYAS 178 (245)
Q Consensus 107 ---~~~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~-----~~~~~~~ 178 (245)
.+..++|.+.+++|.++.+++. ..++.++.++|.+|+.|+|+.+.+++++++++++....+.+. +....++
T Consensus 286 ~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~~~as 364 (477)
T TIGR02309 286 VNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDRGALD 364 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCHHHHH
Confidence 3577899999999999999999 899999999999999999999999999999999999887733 3467899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy13265 179 VAKALAADVANKCATDAVQVFGGNGFN 205 (245)
Q Consensus 179 ~~K~~~~~~~~~~~~~~~~~~G~~~~~ 205 (245)
++|.++++...++. .+++++||.|+.
T Consensus 365 ~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 365 AARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 99999999999995 999999998886
No 45
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.80 E-value=1.2e-18 Score=129.72 Aligned_cols=121 Identities=26% Similarity=0.315 Sum_probs=105.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhh--cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCch----hH
Q psy13265 107 VAAGAVGLAQRCLDEATKYALERKA--FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVD----LGRRNT----LY 176 (245)
Q Consensus 107 ~~~~~lG~~~~al~~~~~~~~~r~~--~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~----~~~~~~----~~ 176 (245)
++++++|+++++++.++++++.|.. .+.++.++|.+|..++|+...+++++++++++++.++ .+.... ..
T Consensus 3 ~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 82 (134)
T PF08028_consen 3 FAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEERAR 82 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 5789999999999999999999886 6789999999999999999999999999999999954 444322 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChH
Q psy13265 177 ASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA 227 (245)
Q Consensus 177 ~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~ 227 (245)
..+.|.++.+.|.++++.+++.+|+.++.+++||+|+|||+++...|...+
T Consensus 83 ~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 83 LRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 677899999999999999999999999999999999999999999997654
No 46
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.69 E-value=5.8e-17 Score=100.02 Aligned_cols=52 Identities=48% Similarity=0.930 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeC
Q psy13265 27 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTN 78 (245)
Q Consensus 27 ~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~ 78 (245)
++++|||+.|+|+..+++++++++++|+|||+|+|+++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999974
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.39 E-value=3.4e-11 Score=103.85 Aligned_cols=193 Identities=17% Similarity=0.165 Sum_probs=136.1
Q ss_pred HHHHHHhhhhhcCCceeEEEecCCCCCCC-----CC--CceeEEE-EeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265 10 AQQKKYLGRLVEEPIVAAYCVTEPGAGSD-----VN--GVKTKAV-KKGDEWILNGQKMWITNGGVANWYFVLARTNPDP 81 (245)
Q Consensus 10 ~~k~~~l~~~~~g~~~~~~~~tE~~~gsd-----~~--~~~~~a~-~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~ 81 (245)
+--.+|++.+++.++..+.++|.|...-+ .. .+-..++ +.++|.+|+|.|..+|+++.+|..+|+.......
T Consensus 131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~ 210 (493)
T COG2368 131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE 210 (493)
T ss_pred HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence 34568999999999999999999952211 12 2334444 4578999999999999999999999984332221
Q ss_pred CCCCCCCeEEEEEeCCCCCcccchh----------------------------------------------hhhhhHHHH
Q psy13265 82 KCPASKAFTGFIVERDTPGLTPGRK----------------------------------------------VAAGAVGLA 115 (245)
Q Consensus 82 ~~~~~~~~~~f~V~~~~~Gv~~~~~----------------------------------------------~~~~~lG~~ 115 (245)
.+.+....|.||+|+|||++... +--+.-+.+
T Consensus 211 --~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~ 288 (493)
T COG2368 211 --DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYA 288 (493)
T ss_pred --CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHHHHH
Confidence 13456678999999999987555 001111111
Q ss_pred HHHH----------------HHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----Cch
Q psy13265 116 QRCL----------------DEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR-----RNT 174 (245)
Q Consensus 116 ~~al----------------~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~-----~~~ 174 (245)
...+ +..+-.+. ....-..+.++++||+.|+||....+.++++...++....... ++.
T Consensus 289 ~~~Fa~~~~~q~~~~k~~k~d~i~G~~~-~~~~~~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~Pn~ 367 (493)
T COG2368 289 VSGFARLHRQQAVGRKAVKLDFILGAAY-LIAETNGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLPNP 367 (493)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHH-HHHHhhCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceecCH
Confidence 1111 11111111 1111135778999999999999999999999999998776433 455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy13265 175 LYASVAKALAADVANKCATDAVQVFGGNGFN 205 (245)
Q Consensus 175 ~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~ 205 (245)
..+...|.+++..--++...+.++.||.-..
T Consensus 368 ~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~ 398 (493)
T COG2368 368 AYANVGRVYAPKAYPRIKEILQDISGGGIIT 398 (493)
T ss_pred HHHhhHHHhcccchHHHHHHHHHHhcCceee
Confidence 6799999999999999999999999975443
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.24 E-value=8.8e-10 Score=98.00 Aligned_cols=185 Identities=11% Similarity=0.047 Sum_probs=127.8
Q ss_pred HHHHHHhhhhhcCCceeEEEecCCCCCCC-----CCCceeEEE-EeCCeEEEeeeeecccCCCcccEEEEE-EEeCCCCC
Q psy13265 10 AQQKKYLGRLVEEPIVAAYCVTEPGAGSD-----VNGVKTKAV-KKGDEWILNGQKMWITNGGVANWYFVL-ARTNPDPK 82 (245)
Q Consensus 10 ~~k~~~l~~~~~g~~~~~~~~tE~~~gsd-----~~~~~~~a~-~~~~g~~l~G~K~~~s~~~~ad~~lv~-a~~~~~~~ 82 (245)
+--++|+..+++.++..+.+++.|...-. ..+.-..++ +.++|.+|+|.|...|+++.+|.++|+ .....-++
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 44678999999999999999999852111 122333444 557899999999999999999998884 44311111
Q ss_pred CCCCCCeEEEEEeCCCCCcccchh--------------------------------------------------------
Q psy13265 83 CPASKAFTGFIVERDTPGLTPGRK-------------------------------------------------------- 106 (245)
Q Consensus 83 ~~~~~~~~~f~V~~~~~Gv~~~~~-------------------------------------------------------- 106 (245)
+.+.-..|.||.++|||++...
T Consensus 216 --d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~ 293 (519)
T TIGR02310 216 --NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQY 293 (519)
T ss_pred --CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHh
Confidence 3345668999999999987622
Q ss_pred ------hh----hhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Q psy13265 107 ------VA----AGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR----- 171 (245)
Q Consensus 107 ------~~----~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~----- 171 (245)
++ .+.++-++-++-.+...+. -..+.++|+||+.|+|+...++.++++...+........
T Consensus 294 ~~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae-----~~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~ 368 (519)
T TIGR02310 294 GGFARLFPMQACTRLAVKLDFITGLLHKALQ-----CTGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQL 368 (519)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEe
Confidence 00 0111111111111111111 134668999999999999999999999998877654321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy13265 172 RNTLYASVAKALAADVANKCATDAVQVFGG 201 (245)
Q Consensus 172 ~~~~~~~~~K~~~~~~~~~~~~~~~~~~G~ 201 (245)
++.....+.|.+.++.--++.+.+.+++||
T Consensus 369 P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 369 PSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred eCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 345568999999999999999999866654
No 49
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.42 E-value=1.3e-06 Score=71.66 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=63.6
Q ss_pred HHHHHHhhhhhcCCceeEEEecCCCC--CCCC----CCceeEEE-EeCCeEEEeeeeecccCCCcccEEEEEEEeCCCCC
Q psy13265 10 AQQKKYLGRLVEEPIVAAYCVTEPGA--GSDV----NGVKTKAV-KKGDEWILNGQKMWITNGGVANWYFVLARTNPDPK 82 (245)
Q Consensus 10 ~~k~~~l~~~~~g~~~~~~~~tE~~~--gsd~----~~~~~~a~-~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~~ 82 (245)
+--++|+..+.+.++..+.+++.|.. +..+ ...-..++ +.++|.+|+|.|...|+++.+|.++|+......++
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 34578999999999999999999962 1111 11344444 56789999999999999999999999976543221
Q ss_pred CCCCCCeEEEEEeCCCCCcccchh
Q psy13265 83 CPASKAFTGFIVERDTPGLTPGRK 106 (245)
Q Consensus 83 ~~~~~~~~~f~V~~~~~Gv~~~~~ 106 (245)
+.+....|.||.+.||+++...
T Consensus 203 --d~dyAv~FavP~~tpGlk~i~R 224 (264)
T PF11794_consen 203 --DEDYAVAFAVPMNTPGLKIICR 224 (264)
T ss_dssp --CGGG-EEEEEETT-TTEEEEE-
T ss_pred --CCceEEEEEccCCCCCEEEEeC
Confidence 4456678999999999998654
No 50
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.83 E-value=0.062 Score=42.76 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=58.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy13265 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR-----RNTLYASVAKALAADVANKCATDAVQVFGGNGFN 205 (245)
Q Consensus 135 ~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~-----~~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~ 205 (245)
.+.++|+||+.|+|+...++.+++++..+........ ++.....++|.+.++.-.++++.+.+++||.-..
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~ 118 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLIT 118 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 4567999999999999999999999998887664321 4455789999999999999999999999986665
No 51
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=94.05 E-value=1.5 Score=40.06 Aligned_cols=70 Identities=16% Similarity=0.069 Sum_probs=59.2
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy13265 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN-TLYASVAKALAADVANKCATDAVQVFGG 201 (245)
Q Consensus 132 ~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~-~~~~~~~K~~~~~~~~~~~~~~~~~~G~ 201 (245)
.|+.+.+.|.+..+|+++...|+++.+.+-++......+.+. ..+..+++.||.+...++-..+-++...
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~ 499 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV 499 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999999999999998888776554 3457899999999999988888788765
No 52
>KOG0137|consensus
Probab=89.14 E-value=10 Score=34.76 Aligned_cols=71 Identities=21% Similarity=0.175 Sum_probs=63.2
Q ss_pred hcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy13265 131 AFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRR-NTLYASVAKALAADVANKCATDAVQVFGG 201 (245)
Q Consensus 131 ~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~-~~~~~~~~K~~~~~~~~~~~~~~~~~~G~ 201 (245)
..++.+.+.+.+-+++++....++++.+.+.++.+.+..+.+ .+.+...+.++|++...++...+..+.++
T Consensus 532 k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 532 KHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 457788899999999999999999999999999999987654 46789999999999999999999888877
No 53
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=60.70 E-value=1.6e+02 Score=28.65 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=62.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHH
Q psy13265 133 GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEK 212 (245)
Q Consensus 133 g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~r 212 (245)
|..+...+.+..+|+++.+.|+.+.+.+.++- +++.+ ..+...++.++.+...++-..+-.+... +.+.++..
T Consensus 560 g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~n---~p~~~~~~ 632 (777)
T PRK09463 560 GGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRP-EADLPLVHWAVQDALYQAEQALDGLLRN---FPNRVVAG 632 (777)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHH
Confidence 56677789999999999999999999887776 23332 2234555555555444444433344332 22334666
Q ss_pred HHHhhc--cccccCChHHHHHHHHHHHHH
Q psy13265 213 LMRDAK--IYQIYEGTAQIQRLIVSRAII 239 (245)
Q Consensus 213 ~~rd~~--~~~~~~g~~~~~~~~i~~~~l 239 (245)
++|-+. ......++++.+..++++.++
T Consensus 633 ~~~~~~~p~g~~~~~p~d~~~~~~~~~~~ 661 (777)
T PRK09463 633 LLRVLVFPLGRRYRAPSDKLDHQVAKLLQ 661 (777)
T ss_pred HHHHeeeCCCCCCCCCCHHHHHHHHHHHh
Confidence 666432 123445677778889998887
No 54
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=28.27 E-value=27 Score=29.34 Aligned_cols=10 Identities=60% Similarity=1.209 Sum_probs=8.8
Q ss_pred CeEEEeeeee
Q psy13265 51 DEWILNGQKM 60 (245)
Q Consensus 51 ~g~~l~G~K~ 60 (245)
|||+|||.|.
T Consensus 114 DGW~LnGe~F 123 (311)
T PF05428_consen 114 DGWELNGEKF 123 (311)
T ss_pred eceEECccCC
Confidence 7999999883
No 55
>PHA02095 hypothetical protein
Probab=22.49 E-value=54 Score=21.15 Aligned_cols=14 Identities=14% Similarity=0.231 Sum_probs=11.3
Q ss_pred eCCeEEEeeeeecc
Q psy13265 49 KGDEWILNGQKMWI 62 (245)
Q Consensus 49 ~~~g~~l~G~K~~~ 62 (245)
...+|+.||.|-|.
T Consensus 25 iq~~yv~ng~wefs 38 (84)
T PHA02095 25 IQNGYVENGSWEFS 38 (84)
T ss_pred eeeeEEecCcEEEE
Confidence 45689999999874
No 56
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=20.12 E-value=1.6e+02 Score=18.81 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=13.4
Q ss_pred eeEEEEeCCeEEEeeeee
Q psy13265 43 KTKAVKKGDEWILNGQKM 60 (245)
Q Consensus 43 ~~~a~~~~~g~~l~G~K~ 60 (245)
+-.++..++.|+++|+..
T Consensus 23 P~~v~~~~~~WiV~Gtl~ 40 (66)
T PF15631_consen 23 PYRVTLDGDSWIVEGTLP 40 (66)
T ss_pred CeEEecCCCeEEEEeecC
Confidence 455666777899999873
No 57
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=20.05 E-value=1.7e+02 Score=17.93 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=19.9
Q ss_pred EEEeeeeecccCCCcccEEEEEEEeC
Q psy13265 53 WILNGQKMWITNGGVANWYFVLARTN 78 (245)
Q Consensus 53 ~~l~G~K~~~s~~~~ad~~lv~a~~~ 78 (245)
|-+.|+|.|+-.+++-+-+-+.-+.+
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e 27 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNE 27 (68)
T ss_pred ccccccEeeeccCCccceeEEEecch
Confidence 55789999999999988666555443
Done!