RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13265
(245 letters)
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 401 bits (1032), Expect = e-141
Identities = 179/291 (61%), Positives = 214/291 (73%), Gaps = 47/291 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
MP++IAGN+ Q+KKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 106 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG ANWYF+LAR++PDPK PA+KAFTGFIVE DTPG+ GRK
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 225
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 226 VFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFG 285
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
+ HQA++FMLA+MA+ +E +R+++ +AA EVD GRRNT YAS+AKA A D+AN+ AT
Sbjct: 286 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 345
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
DAVQ+ GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV+R I+K KN
Sbjct: 346 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKYKN 396
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 384 bits (989), Expect = e-135
Identities = 116/286 (40%), Positives = 165/286 (57%), Gaps = 50/286 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
PV++AG E Q++++L L E+P +AA+ ++EPG GSD +KT+A+++GD ++LNG KM
Sbjct: 95 TPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKM 154
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WI+NGG A W V A NP+ + K +VER TPG +
Sbjct: 155 WISNGGEAEWVVVFATVNPELR---HKGVVALVVERGTPGFKAIKIHGKMGQRASGTYEL 211
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAAG+VG+A+R LDEA KYA ER+AFG
Sbjct: 212 VFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFG 271
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
PIA QA+ F L DM IGIE +R+ AA D G + +++AKA A+++A + A
Sbjct: 272 EPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAAN 331
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
A+Q+ GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 332 QAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 360 bits (926), Expect = e-125
Identities = 114/287 (39%), Positives = 160/287 (55%), Gaps = 51/287 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
M +++ G+E +K+ L + +A+Y ++E AGSD ++T+AV GD+WILNG K
Sbjct: 109 MGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKC 168
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNGG + WY V+A T+PD + + F+V +D G T G K
Sbjct: 169 WITNGGKSTWYTVMAVTDPDKG---ANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTEL 225
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+ A AVG+AQ LD A Y ERK FG
Sbjct: 226 YFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFG 285
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN-TLYASVAKALAADVANKCA 192
P++ +Q V FMLADMA+ IEA+RL AAA + G + ++ +K A+DVA +
Sbjct: 286 RPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVT 345
Query: 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
TDAVQ+FGG G+ D+PVE++MRDAKI QIYEGT QIQR+++SRA++
Sbjct: 346 TDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALL 392
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 332 bits (853), Expect = e-115
Identities = 68/288 (23%), Positives = 112/288 (38%), Gaps = 57/288 (19%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
V G+ Q+ +L L + AA +E AGSD++ ++T+ GD +++G K+
Sbjct: 83 WTVQRLGDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKV 141
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
W T A+ V +V DTPG+ R
Sbjct: 142 WTTAAAYADHLVVFGLQEDGSG-------AVVVVPADTPGVRVERVPKPSGCRAAGHADL 194
Query: 107 ----------------------------------VAAGAVGLAQRCLDEATKYALERKAF 132
VA G VG+ + C A +A R+ F
Sbjct: 195 HLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQF 254
Query: 133 GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN-TLYASVAKALAADVANKC 191
G P+ HQ VA +AD+ + + A+ D G +AK +AA+ A
Sbjct: 255 GRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAG 314
Query: 192 ATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
A A QV G + VE+ RDAK+ +I EG++++ R+++++ +
Sbjct: 315 AATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 362
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 333 bits (855), Expect = e-114
Identities = 71/328 (21%), Positives = 121/328 (36%), Gaps = 83/328 (25%)
Query: 1 MPVVIAGNEAQQKKYLGRLV--EEPIVAAYCVTEPGAGSDVN-----GVKTKAVKKGDEW 53
MPV++ + + Q+K+L + E +A+ +EP ++ G++T A K G+EW
Sbjct: 102 MPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEW 161
Query: 54 ILNGQKMWITNGGV-----ANWYFVLARTNPDPKCPA------SKAFTGFIVERDTP--- 99
+++G+K+W +N G A+ V+ R + DP P + +V R+T
Sbjct: 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 221
Query: 100 ---GLTPGRK------------------------------------------------VA 108
+ V
Sbjct: 222 KKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVG 281
Query: 109 AGAVGLAQRCLDEATKYALERKAFGV-PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEV 167
A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA +
Sbjct: 282 AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTL 341
Query: 168 DLG----RRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIY 223
+ + A K DVA +C DA++ G + D +L+ + Y ++
Sbjct: 342 EDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLF 401
Query: 224 EGT------AQIQRLIVSRAIIEKAKNS 245
+G Q+QR++ A
Sbjct: 402 DGGNIGLRRRQMQRVMALEDYEPWAATY 429
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 329 bits (846), Expect = e-113
Identities = 89/292 (30%), Positives = 146/292 (50%), Gaps = 50/292 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
P++ G++ Q++ ++ + + ++EPG GSD T A +GD W+LNG K
Sbjct: 97 GPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKA 156
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITN A+ V A T+ + +K+ + F+V TPGLT G+K
Sbjct: 157 WITNAWEASAAVVFASTDRALQ---NKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANL 213
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+A+ A+G+AQ LD A YA R AFG
Sbjct: 214 IFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFG 273
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
P+ Q + F LADMA+ +E++RL +AA D + A++AK A++ A +
Sbjct: 274 APLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISH 333
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS 245
A+Q+ GG G+ ++ P E+ RDA+I +IYEGT++IQRL+++ ++ +++
Sbjct: 334 QAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRSA 385
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 327 bits (840), Expect = e-112
Identities = 107/286 (37%), Positives = 149/286 (52%), Gaps = 52/286 (18%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
P+++ G E Q+K++L ++ + AY ++EP AGSD ++ A +++NG K
Sbjct: 106 HPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKS 165
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WIT+GG A++Y + ART + + F+V D PGL+ G+
Sbjct: 166 WITHGGKADFYTLFARTGEGSR-----GVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSA 220
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+AA A GLAQ LDEA YA ER AFG
Sbjct: 221 FYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFG 280
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
I HQ + F+LADMA + +R T++ AA D GR + AS+AK A D A K T
Sbjct: 281 RKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTT 340
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
DAVQVFGG G+ DY VE+ MR+AKI QI+EGT QIQRL+++R +
Sbjct: 341 DAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT 386
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 326 bits (838), Expect = e-112
Identities = 106/287 (36%), Positives = 157/287 (54%), Gaps = 51/287 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQK 59
P+ G EAQ++K+L LVE + A+ +TEP AG+D +G +T A K D + LNG K
Sbjct: 99 NPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSK 158
Query: 60 MWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK------------- 106
++ITNGG A+ Y V A T+ + T FI+E TPG T G+K
Sbjct: 159 IFITNGGAADIYIVFAMTDKSKG---NHGITAFILEDGTPGFTYGKKEDKMGIHTSQTME 215
Query: 107 ----------------------------------VAAGAVGLAQRCLDEATKYALERKAF 132
VAA A+G+A+ L +A +Y+ +R F
Sbjct: 216 LVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQF 275
Query: 133 GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCA 192
G P+ Q+++F LADM + IEA+R KAA + G+ T+ A++AK +A+DVA +
Sbjct: 276 GKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVT 335
Query: 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
T+AVQ+FGG G++ +YPV + MRDAKI QIYEGT ++Q ++ A++
Sbjct: 336 TEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 325 bits (836), Expect = e-112
Identities = 106/287 (36%), Positives = 152/287 (52%), Gaps = 48/287 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+++AG+EAQ++ +L +L + A+ +TEPG+GSD +KTKA K W LNG K
Sbjct: 98 GHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQ 157
Query: 61 WITNGGVANWYFVLARTNPDPKCPA-SKAFTGFIVERDTPGLTPGRK------------- 106
+IT G VA Y V+ART+P P + + F R GL GRK
Sbjct: 158 FITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQ 217
Query: 107 ----------------------------------VAAGAVGLAQRCLDEATKYALERKAF 132
+AA AVGL Q LD A YA R+AF
Sbjct: 218 LILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAF 277
Query: 133 GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCA 192
G PIA + V+F LA+ A +EA+RL ++KAA D GR TL A+ AK A++ A K
Sbjct: 278 GRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKAC 337
Query: 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
+A+Q+ GG G+ DYPVE+ RDA++ +I EGT++I +L+++R ++
Sbjct: 338 DEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLL 384
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 325 bits (835), Expect = e-111
Identities = 67/319 (21%), Positives = 114/319 (35%), Gaps = 75/319 (23%)
Query: 1 MPVVIAGNEAQQKKYLGRLV--EEPIVAAYCVTEPGAGSDVN-----GVKTKAVKKGDEW 53
P+ +A Q ++L + E +A+ +EPG ++ G +T A +GDEW
Sbjct: 104 TPINLAAGP-QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEW 162
Query: 54 ILNGQKMWITNGGVANW--------YFVLARTNPDPKCPASKAFTGFIV------ERDTP 99
++NG+KMW TN ++ A T + +V
Sbjct: 163 VINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEG 222
Query: 100 GLTPGRK-----------------------------------------------VAAGAV 112
R V A V
Sbjct: 223 SFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGV 282
Query: 113 GLAQRCLDEATKYALERKAFG-VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGR 171
GL + D A K+A E G VP+ QA A +L+ + I EA+R KAA ++ G
Sbjct: 283 GLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGP 342
Query: 172 RN----TLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGT- 226
+ A AK ++ A K TD + G + ++ P L+ A + I++G
Sbjct: 343 GDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGN 402
Query: 227 AQIQRLIVSRAIIEKAKNS 245
I+R + + +++ ++
Sbjct: 403 VGIRRRHLQQLMLKPTYDA 421
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 320 bits (823), Expect = e-110
Identities = 104/286 (36%), Positives = 152/286 (53%), Gaps = 55/286 (19%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
++ G+EAQ+++YL L + A+C+TEP AGSD ++ +A + ++LNG K
Sbjct: 94 YMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKS 153
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WIT+ G A+ Y V+ART K + F+VE+ TPGL+ GR
Sbjct: 154 WITSAGHAHLYVVMART--------EKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEV 205
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
VAA AVG+A+ + A YA ER+ FG
Sbjct: 206 RLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFG 265
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
+ HQA+AF +ADM + I A+R ++AA + D G R TL AS AK A+ A +
Sbjct: 266 KKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTR 325
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
+AVQV GG G++ DY VE+ RDAK+ +IYEGT++IQRL+++R +
Sbjct: 326 EAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELY 371
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 317 bits (816), Expect = e-108
Identities = 92/286 (32%), Positives = 137/286 (47%), Gaps = 51/286 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+ G E Q+ YL +L E + ++C++E GAGSD +KT+A K+GD ++LNG KM
Sbjct: 120 TLIRKHGTEEQKATYLPQLTTEKV-GSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKM 178
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WI++ A + V+A +P K T F+V+RDTPGL G+
Sbjct: 179 WISSAEHAGLFLVMANVDPTIG---YKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPL 235
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+AA +GLAQ C D Y ER FG
Sbjct: 236 TFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFG 295
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
+ Q + +A +A +EA+RL AA ++ G+ AS+AK A+++A + +
Sbjct: 296 KRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTS 355
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 239
++ GG G+ DYPVEK RDAKI IYEG + IQ +++ I
Sbjct: 356 KCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHID 401
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 313 bits (805), Expect = e-107
Identities = 95/287 (33%), Positives = 138/287 (48%), Gaps = 48/287 (16%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+V GNEAQ++KYL +L+ + A ++EP AGSDV +K KA KKG+ +ILNG K
Sbjct: 106 NQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKF 165
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
WITNG A+ V A+T+ PAS+ T FIVE+ PG + +K
Sbjct: 166 WITNGPDADVLIVYAKTDLA-AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCEL 224
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+A G +GL Q LD Y R+AFG
Sbjct: 225 IFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFG 284
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
I Q + +ADM + A R A D G + +A+ A + A
Sbjct: 285 QKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVAL 344
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 240
D +Q FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++ RA
Sbjct: 345 DGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNA 391
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 313 bits (805), Expect = e-107
Identities = 96/291 (32%), Positives = 141/291 (48%), Gaps = 51/291 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
++ G+EA +KKY+ +L + + +TEP AGSDV + + A KGD W+LNG K
Sbjct: 99 YTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKT 158
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVE-RDTPGLTPGRK------------- 106
WI+N A+ A T+ S+ + F++E R+ PG+
Sbjct: 159 WISNAAQADVLIYYAYTDKAAG---SRGLSAFVIEPRNFPGIKTSNLEKLGSHASPTGEL 215
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
AAG VGLAQ CLD A KY ER+ FG
Sbjct: 216 FLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFG 275
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN-TLYASVAKALAADVANKCA 192
PI Q M+A MA+ +EA+RL KAAA D GR N L ++AK A + +KCA
Sbjct: 276 KPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCA 335
Query: 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243
A+++ G G++++YPV + RDA Y + EG+A I ++I++ + K
Sbjct: 336 NYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLGVRK 386
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 310 bits (797), Expect = e-106
Identities = 84/289 (29%), Positives = 140/289 (48%), Gaps = 52/289 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+ GNE Q+ K+ L A+YC+TEPG+GSD + T A K+GD +ILNG K
Sbjct: 109 WMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKA 168
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
+I+ G ++ Y V+ RT K + +VE+ TPGL+ G+K
Sbjct: 169 FISGAGESDIYVVMCRTGGP----GPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAV 224
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
+A+ ++G A + + RK FG
Sbjct: 225 IFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFG 284
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEV-DLGRRNTLYASVAKALAADVANKCA 192
P+A++Q + F LADMA + A+RL AA + + + S+AK A D
Sbjct: 285 EPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAIC 344
Query: 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241
A+Q+ GG G+ DY V++ +RD++++QI EG+ ++ R+++SR+++++
Sbjct: 345 NQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 306 bits (785), Expect = e-102
Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 70/305 (22%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQ 58
+P+V G E Q++KYL +L +AAYC+TEPG+GSD KT+A + G +ILNG
Sbjct: 119 LPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGV 178
Query: 59 KMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK------------ 106
K WI+N G A+ + V A+ + + FT F+VERDTPGL+ G +
Sbjct: 179 KQWISNAGFAHLFTVFAKVDG-------EHFTAFLVERDTPGLSFGPEEKKMGIKASSTR 231
Query: 107 -----------------------------------VAAGAVGLAQRCLDEATKYALERKA 131
+ AGAVG A+R L+ + +YA +R
Sbjct: 232 QVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQ 291
Query: 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN--------------TLYA 177
FG PI + L +MA I A+ + +D + A
Sbjct: 292 FGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEA 351
Query: 178 SVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 237
S+ K L ++V + + VQ+ GG G++ +YP+E+ RDA+I +I+EGT +I RL++
Sbjct: 352 SIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGM 411
Query: 238 IIEKA 242
++ +A
Sbjct: 412 LLRRA 416
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 301 bits (772), Expect = 1e-99
Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 75/310 (24%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQ 58
+P+V+ GNE Q+KKYL L +AAY +TEPG+GSD G KT A +G ++LNG+
Sbjct: 124 LPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGE 183
Query: 59 KMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK------------ 106
K WITN A+ + V A+ + + F+ FIVE+D G++ +
Sbjct: 184 KQWITNSAFADVFIVYAKIDG-------EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTR 236
Query: 107 -----------------------------------VAAGAVGLAQRCLDEATKYALERKA 131
+ G VG A+R ++ + +YA +R+
Sbjct: 237 TLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQ 296
Query: 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN------------------ 173
F PIA + LA+MA A+ + + +
Sbjct: 297 FKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAE 356
Query: 174 -TLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 232
+ S+ K ++V + + VQ+ GG GF ++Y +E++ RD++I +I+EGT +I RL
Sbjct: 357 YAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRL 416
Query: 233 IVSRAIIEKA 242
IV + KA
Sbjct: 417 IVPGTFLRKA 426
Score = 33.5 bits (77), Expect = 0.055
Identities = 17/163 (10%), Positives = 50/163 (30%), Gaps = 7/163 (4%)
Query: 84 PASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVA 143
A K ++ + V A++ A ++ +G + Q +
Sbjct: 436 KAQKLQEELMMMMPEEVGDEPLALQKYLVNNAKKIGLMVAGLAAQK--YGKALDKEQEIL 493
Query: 144 FMLADMAIGIEASRLTWMKA--AAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGG 201
+AD+ + A ++ A + +N + + N+ A +
Sbjct: 494 VNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEAHAKETL-- 551
Query: 202 NGFNSDYPVEKLMRDAKIYQIYEGTAQI-QRLIVSRAIIEKAK 243
+ + ++ + + I ++ ++ I+E +
Sbjct: 552 IAVENGDMLRMMLSSLRKLTRHTPLNVIPKKREIAAKILEDER 594
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 301 bits (772), Expect = 1e-99
Identities = 79/294 (26%), Positives = 130/294 (44%), Gaps = 52/294 (17%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQ 58
+++ G +AQ++KYL +L VAA+C+TEP +GSD ++T AV G + LNG
Sbjct: 139 KGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGS 198
Query: 59 KMWITNGGVANWYFVLARTNPD--PKCPASKAFTGFIVERDTPGLTPGRK---------- 106
K+WI+NGG+A+ + V A+T + T F+VER G+T G
Sbjct: 199 KLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASN 258
Query: 107 -------------------------------------VAAGAVGLAQRCLDEATKYALER 129
+AA G + + +A +A R
Sbjct: 259 TAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNR 318
Query: 130 KAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN-TLYASVAKALAADVA 188
FG I + LA M + + +A +D G + + A+++K ++ A
Sbjct: 319 TQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAA 378
Query: 189 NKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKA 242
K + +Q+ GG GF + VE+++RD +I++I+EGT I RL V+
Sbjct: 379 WKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 432
Score = 30.0 bits (68), Expect = 0.85
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 109 AGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVD 168
A + L + I Q + LAD AI + A + +A+ +
Sbjct: 485 GELAVRALEQFATVVEAKLIK--HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLS 542
Query: 169 LGRRNTLYASVAKALA 184
G A K L
Sbjct: 543 EGHPT---AQHEKMLC 555
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 281 bits (722), Expect = 1e-94
Identities = 86/279 (30%), Positives = 131/279 (46%), Gaps = 48/279 (17%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G E Q++K+L + V ++ A +TEPGAGSD+ + T AVK GD +I+NGQK +ITNG
Sbjct: 106 GTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGI 165
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
A+ V +T+P K P + + +VERDTPG T GRK
Sbjct: 166 HADLIVVACKTDPQAK-PPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAK 224
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
VA A A+ +Y +R AFG ++
Sbjct: 225 VPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEF 284
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVF 199
Q V F LA+MA I R + E G++ S+AK ++A + A +A+Q+
Sbjct: 285 QTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLH 344
Query: 200 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GG G+ +Y + + RD + IY GT ++ + I++R +
Sbjct: 345 GGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 279 bits (716), Expect = 2e-93
Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 51/279 (18%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G++A ++Y+ + ++ + VTEPGAGSDV ++T+AV++GD +++NG K +IT+G
Sbjct: 127 GSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGV 186
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
A++ RT P + ++++++PG R+
Sbjct: 187 RADFVTTAVRTGG----PGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVR 242
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
+A A A R LD A +A ER+ FG P+
Sbjct: 243 VPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGR 302
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVF 199
Q + LA+MA ++ + G S+AK A + +AVQ+F
Sbjct: 303 QIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIF 362
Query: 200 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GG G+ + +E+ RD +I I GT +I ++++ I
Sbjct: 363 GGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 278 bits (714), Expect = 3e-93
Identities = 75/280 (26%), Positives = 116/280 (41%), Gaps = 52/280 (18%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G++ Y+ + + A +TEPG GSDV ++T+A GD +++NG K +IT+G
Sbjct: 124 GDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGV 183
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
A++ ART P + + +V++ TPG RK
Sbjct: 184 RADYVVTAARTGG----PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVR 239
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
+A A AQRCLD ++ R FG P+ +
Sbjct: 240 VPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISR 299
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRN-TLYASVAKALAADVANKCATDAVQV 198
QAV LA MA I+ +R+ G N AK A + A AVQ+
Sbjct: 300 QAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQL 359
Query: 199 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
FGG G+ ++ VE+ RD +I I GT +I + ++ +
Sbjct: 360 FGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 276 bits (709), Expect = 4e-92
Identities = 51/307 (16%), Positives = 95/307 (30%), Gaps = 70/307 (22%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+ ++ + L + +VA V G V T W+L+G+K
Sbjct: 111 TLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKT 170
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
++ V + + ART+ +V RDTPG T
Sbjct: 171 LVSMAPVGTHFVINARTDGTDG---PPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDI 227
Query: 107 -----------------------------------VAAGAVGLAQRCLDEATKYALERKA 131
V VG+AQ D A R
Sbjct: 228 VFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPE 287
Query: 132 FGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDL------------GRRNTLYASV 179
A ++A++ + A R T A D GR+ +
Sbjct: 288 PP-----QAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQC 342
Query: 180 AKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL-IVSRAI 238
AK +A + +D + + GG + + +P+ +L+RD + + + A + + +S
Sbjct: 343 AKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQA 402
Query: 239 IEKAKNS 245
+ +++
Sbjct: 403 LGIERDN 409
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 266 bits (682), Expect = 2e-88
Identities = 77/278 (27%), Positives = 120/278 (43%), Gaps = 50/278 (17%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G++AQ++KYL +L + + +TEP GSD + T+A K + L+G KMWITN
Sbjct: 116 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSP 175
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
+A+ + V A+ + D + GFI+E+ GL+
Sbjct: 176 IADVFVVWAKLDEDGR----DEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAF 231
Query: 107 --------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 140
+A GA+G A+ C A +Y L+RK FG P+AA+Q
Sbjct: 232 VPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQ 291
Query: 141 AVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFG 200
+ LADM I ++ D G S+ K + A A A + G
Sbjct: 292 LIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLG 351
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 352 GNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQ 389
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 259 bits (665), Expect = 2e-85
Identities = 79/278 (28%), Positives = 114/278 (41%), Gaps = 52/278 (18%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G+EAQ++KYL L + VA + +TEP GSD +G+ T A K W +NGQK WI N
Sbjct: 151 GSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNST 210
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
A+ + AR GFIV++D PGL +
Sbjct: 211 FADLLIIFARNTTT------NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVF 264
Query: 107 --------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 140
VA +G++ D +Y ERK FG P+AA Q
Sbjct: 265 VPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQ 324
Query: 141 AVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFG 200
L M ++A L + + G+ AS+ KA + A + A+ ++ G
Sbjct: 325 LNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLG 384
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GNG +D+ V K D + YEGT I L+ R +
Sbjct: 385 GNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 422
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 257 bits (659), Expect = 6e-85
Identities = 68/278 (24%), Positives = 112/278 (40%), Gaps = 54/278 (19%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G+E Q+ ++L RL + + +TEP GS+ G++T+A + G +WILNG KMWITNG
Sbjct: 122 GSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGN 181
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
+A+ V A+T+ GF+V DTPG T
Sbjct: 182 LADVATVWAQTD--------DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVR 233
Query: 107 --------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 140
+ GA+G A+ L+ Y R+ F P++ +Q
Sbjct: 234 LPASAQLPLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQ 293
Query: 141 AVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFG 200
LA+M + + L + D S+ K A A + + G
Sbjct: 294 LTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLG 353
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
G+G +Y + + + YEGT+++ L + +A+
Sbjct: 354 GSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKAL 391
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 255 bits (653), Expect = 3e-84
Identities = 77/279 (27%), Positives = 116/279 (41%), Gaps = 54/279 (19%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNG-VKTKAVKKGDEWILNGQKMWITNG 65
G+E Q++++L +L +V + +TEP GSD G +KT+A ++GD W+LNG KMWITNG
Sbjct: 108 GSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNG 167
Query: 66 GVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK------------------- 106
+A+ + A+ GF+V DTPG
Sbjct: 168 NLAHLAVIWAKDEG-------GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEV 220
Query: 107 ---------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 139
+A GA+G + +EA +A R FG P+A
Sbjct: 221 RVPESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKK 280
Query: 140 QAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVF 199
Q V LA+M L + A D G+ S+AK A + A A +
Sbjct: 281 QLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDIL 340
Query: 200 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GG+G +Y + M + + YEGT + L++ R I
Sbjct: 341 GGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREI 379
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 254 bits (650), Expect = 1e-83
Identities = 78/278 (28%), Positives = 117/278 (42%), Gaps = 54/278 (19%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 66
G++ Q+ ++L + + + +TEP GSD G++T+A + GD+WIL G KMWITNG
Sbjct: 127 GSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGS 186
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------------- 106
VA+ V ART+ + GF+V DTPG T
Sbjct: 187 VADVAVVWARTD--------EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVR 238
Query: 107 --------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 140
+ GA+G A+ CL+ A YA R+ F PI Q
Sbjct: 239 LPDSARLPGATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQ 298
Query: 141 AVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFG 200
LADM + L + + D G S+ K A + A A V G
Sbjct: 299 LTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLG 358
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
+G +YPV + + + YEGT+++ LI+ +A+
Sbjct: 359 ASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 252 bits (645), Expect = 5e-83
Identities = 56/292 (19%), Positives = 92/292 (31%), Gaps = 78/292 (26%)
Query: 6 AGNEAQQKKYLGRLVE-EPIVAAYCVTEPGAGSDVNGVKTKAVKKG-DEWILNGQKMWIT 63
A ++ L + E E V GA D GV T+ G W+L+G+K+ ++
Sbjct: 110 PPVRAMAERLLRAMAEGEAAVC-------GALKDAPGVVTELHSDGAGGWLLSGRKVLVS 162
Query: 64 NGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK----------------- 106
+A +FV A+ D S +V RD PGLT
Sbjct: 163 MAPIATHFFVHAQRRDDDG---SVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFD 219
Query: 107 --------------------------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
+ G+AQ D A + R
Sbjct: 220 RCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGE-- 277
Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDL------------GRRNTLYASVAKA 182
P A + ++A + + A R T A D GRR AK
Sbjct: 278 PRAGAR---ALVAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMMTPFQYAKM 334
Query: 183 LAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 234
++A D + + GG + + +P+ +L RD + + + + +
Sbjct: 335 TVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDY 386
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 243 bits (622), Expect = 1e-79
Identities = 76/280 (27%), Positives = 118/280 (42%), Gaps = 55/280 (19%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDE--WILNGQKMWITN 64
G+E Q++KYL +L + ++ + +TEP +GSD + ++T+A + LNG K WITN
Sbjct: 110 GSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITN 169
Query: 65 GGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK------------------ 106
+A+ + V AR GF++E+ GL+ R
Sbjct: 170 SPMADLFVVWARCED-------GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDG 222
Query: 107 ----------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPIAA 138
+A G +G ++ CL A +YAL+R FGVP+A
Sbjct: 223 VEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLAR 282
Query: 139 HQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQV 198
+Q + LADM I ++ D + S+ K A A A +
Sbjct: 283 NQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDM 342
Query: 199 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
GGNG + +Y V + + + YEGT I LI+ RAI
Sbjct: 343 LGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 382
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 173 bits (442), Expect = 3e-52
Identities = 69/292 (23%), Positives = 119/292 (40%), Gaps = 56/292 (19%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNG 65
G+E Q+K++L L++ I + +C+TEP A SD ++ + D +++NG+K W +
Sbjct: 131 GSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGA 190
Query: 66 GVANWYF--VLARTNPDPKCPASKAFTGFIVERDTPGLT--------------------- 102
G VL RT K + +V +TPG+
Sbjct: 191 GNPKCKIAIVLGRTQNTSL-SRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 103 ---------------PGR--KVAAG------------AVGLAQRCLDEATKYALERKAFG 133
GR +++ G VGLA+R L + A +R AF
Sbjct: 250 HFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFK 309
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDL--GRRNTLYASVAKALAADVANKC 191
+ AH+ VA +A+ I IE RL +KAA +D ++ K A +K
Sbjct: 310 KKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKI 369
Query: 192 ATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243
A+QV GG G + DYP+ + ++ ++ +G ++ ++ +
Sbjct: 370 VDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQA 421
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 142 bits (359), Expect = 2e-39
Identities = 55/292 (18%), Positives = 99/292 (33%), Gaps = 69/292 (23%)
Query: 7 GNEAQQKKYLGRLV----EEPIVAAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMW 61
+Y L+ + ++ +TE GSDV T+A + D + L G K +
Sbjct: 157 TTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWF 216
Query: 62 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTP-----GLTPGR----------- 105
+ ++ + VLA+T + + F V R P + R
Sbjct: 217 FSVP-QSDAHLVLAQT--------AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNA 267
Query: 106 ---------------------------------KVAAGAVGLAQRCLDEATKYALERKAF 132
A G+ + +R A +A +R F
Sbjct: 268 SCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVF 327
Query: 133 GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNT------LYASVAKALAAD 186
G P+ + +L+ MA+ +E + A D L+ AK +
Sbjct: 328 GNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICK 387
Query: 187 VANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 238
+A++V GG G+ + + +L R+ + I+EG+ I L V R +
Sbjct: 388 RGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVL 439
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 118 bits (296), Expect = 6e-31
Identities = 37/299 (12%), Positives = 74/299 (24%), Gaps = 76/299 (25%)
Query: 13 KKYLGRLVEEPIVAAYCVTEPGAG-----SDVNGVKTKAVKK-GDEWILNGQKMWITNGG 66
+L L E+ + +P + + V+K D I+NG K T
Sbjct: 136 HNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIA 195
Query: 67 VANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT--------PGRKVAAG-------- 110
++ + P + + +TPG+T
Sbjct: 196 FGDYMHIGCLYRPGIP---GEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDEL 252
Query: 111 ------------------------AVGLAQRCLDE------ATKYALERKAFGVPIAAHQ 140
A QR D + G+ I +
Sbjct: 253 DSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVGLAILITE 312
Query: 141 --------AVAFMLADMAIGIEASRLTWMKAAAEVDLGRR-----NTLYASVAKALAADV 187
V+ +A + A + + + + N L +A
Sbjct: 313 HIGTSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNPLIYDFGRAHFLQN 372
Query: 188 ANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYE------GTAQIQRLIVSRAIIE 240
+ + + G + P E D++ Q + +R+ + R I +
Sbjct: 373 QMSVMYELLDLAGRSSLM--IPSEGQWDDSQSGQWFVKLNNGPKGNPRERVQIGRVIRD 429
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 104 bits (262), Expect = 2e-26
Identities = 34/274 (12%), Positives = 71/274 (25%), Gaps = 66/274 (24%)
Query: 31 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAF- 89
S K + ILNG W + A + V
Sbjct: 139 DPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGV 198
Query: 90 ---TGFIVERD--------------------------------TPGLTPGRK-------- 106
+ + + + G + G
Sbjct: 199 IPRSDYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIF 258
Query: 107 -----------VAAGAVGLAQRCLDEATKYALERK--AFGVPIAAHQAVAFMLADMAIGI 153
+A ++G+A+R ++ + R G + +A+ +
Sbjct: 259 YTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQV 318
Query: 154 EASRLTWMKAAAEVDLGRRNTLYASV--------AKALAADVANKCATDAVQVFGGNGFN 205
A+R K + + N Y + +A A + + + G F
Sbjct: 319 AAARALLEKTWEDHRIHGLNHQYPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFM 378
Query: 206 SDYPVEKLMRDAKIYQIYEGTAQ-IQRLIVSRAI 238
+ +++L RDA + + T + I+ R +
Sbjct: 379 DNSELQRLFRDAHMTGAHAYTDYDVCAQILGREL 412
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 105 bits (263), Expect = 3e-26
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 20/164 (12%)
Query: 101 LTPGR-KVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQAVAFMLADMAIG 152
+ R + A + A +Y+ R+ I Q + L +
Sbjct: 278 MVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLAT 337
Query: 153 IEASRLTW----------MKAAAEVDLGRRNTLYA--SVAKALAADVANKCATDAVQVFG 200
A ++ + DL L+A + KA AN + G
Sbjct: 338 AYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACG 397
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
G+G++ + + +EG + L +R +++
Sbjct: 398 GHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQ 441
Score = 87.6 bits (217), Expect = 5e-20
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNG-- 57
++ QQ+++ I Y TE G G+ + G++T A K E+ILN
Sbjct: 110 TLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT 169
Query: 58 ---QKMWITN-GGVANWYFVLARTNPDPKCPASKAFTGFIVE-RDTPGLTPGRKVAAGAV 112
K W G +N VLA+ +C F+V R+ P + G +
Sbjct: 170 VTSIKWWPGGLGKTSNHAIVLAQLITQGEC---YGLHAFVVPIREIGTHKPLPGITVGDI 226
Query: 113 G 113
G
Sbjct: 227 G 227
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 105 bits (262), Expect = 5e-26
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 20/164 (12%)
Query: 101 LTPGR-KVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQAVAFMLADMAIG 152
+ R + A A R + AT+Y+ R+ FG + ++ L +
Sbjct: 281 MVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLAS 340
Query: 153 IEASRLTW----------MKAAAEVDLGRRNTLYA--SVAKALAADVANKCATDAVQVFG 200
A R + A D +A + K+L + ++ G
Sbjct: 341 AYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCG 400
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
G+G+ + +L YEG + +L V+R +++
Sbjct: 401 GHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQ 444
Score = 88.4 bits (219), Expect = 3e-20
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITN 64
G E QQKK+L + I+ Y TE G GS+V G++T A K DE++++ +
Sbjct: 114 GTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASK 173
Query: 65 ------GGVANWYFVLARTNPDPKCPASKAFTGFIVE-RDTPGLTPGRKVAAGAVG 113
G V+ V AR + K GFIV+ R +P + G +G
Sbjct: 174 WWPGGLGKVSTHAVVYARLITNGKD---YGIHGFIVQLRSLEDHSPLPNITVGDIG 226
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 94.1 bits (233), Expect = 3e-22
Identities = 34/314 (10%), Positives = 68/314 (21%), Gaps = 80/314 (25%)
Query: 2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAG--------SDVNGVKTKAVKKGDEW 53
+ Y L ++ + + +T P D +
Sbjct: 116 ADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGI 175
Query: 54 ILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK------- 106
++ G +M T +A+ + + K F + TPGL +
Sbjct: 176 VVRGARMTAT-FPLADEVLIFPSILLQAG--SEKYALAFALPTSTPGLHFVCREALVGGD 232
Query: 107 ------------------------------VAAGAVGLAQRCLDEATKYALERKAFGVPI 136
G V L
Sbjct: 233 SPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALK 292
Query: 137 AAHQAVAFMLA--------------------DMAIGIEASRLTWMKAAAEVDLG-----R 171
A +A ++ + +EA R W +A E
Sbjct: 293 TAKTEAFLGVAALMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLV 352
Query: 172 RNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMR-----DAKIYQIYEGT 226
+ A+ L + + Q+ P EK + + +
Sbjct: 353 PDRGALDGARNLYPRLYPRIREILEQIGA--SGLITLPSEKDFKGPLGPFLEKFLQGAAL 410
Query: 227 AQIQRLIVSRAIIE 240
+R+ + R +
Sbjct: 411 EAKERVALFRLAWD 424
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 82.8 bits (205), Expect = 2e-18
Identities = 30/254 (11%), Positives = 63/254 (24%), Gaps = 65/254 (25%)
Query: 44 TKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAF-------------- 89
+ +NG W + A+W + D + +F
Sbjct: 124 GAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWN 183
Query: 90 ------TG----------------FIVERDTPGLTPGRK------------------VAA 109
TG + + PG + ++A
Sbjct: 184 VVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISA 243
Query: 110 GAVGLAQRCLDEATKYALERK---AFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAE 166
VG+A D ++ +R G +A+ + I+A+ A+
Sbjct: 244 PIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVAD 303
Query: 167 VD----LGRRNTLYASV----AKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAK 218
G + + A A + G + P+++ RDA
Sbjct: 304 EYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAH 363
Query: 219 IYQIYEGTAQIQRL 232
+++ +
Sbjct: 364 AGRVHAANDPERAY 377
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 81.4 bits (200), Expect = 6e-18
Identities = 34/287 (11%), Positives = 67/287 (23%), Gaps = 78/287 (27%)
Query: 13 KKYLGRLVEEPIVAAYCVTEPGAGSDVN-------GVKTKAVKK-GDEWILNGQKMWITN 64
+YL + E ++ +T+P + + + V+K D ++ G K T
Sbjct: 132 TEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTG 191
Query: 65 GGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLT---------PGRKVAAGAVGLA 115
++ + ++ A F D GL + + L
Sbjct: 192 SINSHEHIIMPTIAMTEA-DKDYAV-SFACPSDADGLFMIYGRQSCDTRKMEEGADIDLG 249
Query: 116 QRCLDEATKYALERKAFGVP----------------------------IAAHQAVAFMLA 147
+ + F +P V ++
Sbjct: 250 NKQFGGQEALVVFDNVF-IPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVI 308
Query: 148 DMA-----------------------IGIEASRLTWMKAAAEV-----DLGRRNTLYASV 179
A E + +AE + + L A+V
Sbjct: 309 GAAALAADYNGAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQIDLLLANV 368
Query: 180 AKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGT 226
K + A + GG P E + + T
Sbjct: 369 CKQNITRFPYEIVRLAEDIAGGLMV--TMPSEADFKSETVVGRDGET 413
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 4e-11
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 37/165 (22%)
Query: 84 PASKA-----FTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAF--GVPI 136
P + A F G++ V VG + L+ E + G I
Sbjct: 54 PTTPAELVGKFLGYVS----------SLVEPSKVGQFDQVLNLCLTE-FEN-CYLEGNDI 101
Query: 137 AAHQAVAFMLADMAIGIEASRLTWMKA--AAEVDLGRRNTLYASVA--KALAADVANKCA 192
H A +L + + ++ +K A + R ++ A +A+ A A
Sbjct: 102 --HALAAKLLQENDTTLVKTK-ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 193 TDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 237
+FGG G DY E+L RD +YQ Y + LI A
Sbjct: 159 -----IFGGQGNTDDY-FEEL-RD--LYQTYHVL--VGDLIKFSA 192
Score = 43.1 bits (101), Expect = 5e-05
Identities = 39/193 (20%), Positives = 64/193 (33%), Gaps = 67/193 (34%)
Query: 84 PA----SKAFTGFIVERDTPGLTPGRKVAAG-AVGLAQRCLDEATKY-ALERKAFGVPIA 137
PA KA + + GL P AG ++G E Y AL
Sbjct: 1734 PALTLMEKAAFEDLKSK---GLIPADATFAGHSLG-------E---YAAL---------- 1770
Query: 138 AHQAVAFMLADMAIGIEASR-LTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAV 196
A A + + + R +T A +LGR N Y +A VA + +A+
Sbjct: 1771 ASLADVMSIES-LVEVVFYRGMTMQVAVPRDELGRSN--YGMIA-INPGRVAASFSQEAL 1826
Query: 197 QVF--------GG-----NGFNSD---Y-------PVEKL---MRDAKIYQIYEGTAQIQ 230
Q G N +N + Y ++ + + K+ +I I
Sbjct: 1827 QYVVERVGKRTGWLVEIVN-YNVENQQYVAAGDLRALDTVTNVLNFIKLQKI-----DII 1880
Query: 231 RLIVSRAIIEKAK 243
L S + +E+ +
Sbjct: 1881 ELQKSLS-LEEVE 1892
Score = 41.2 bits (96), Expect = 2e-04
Identities = 35/221 (15%), Positives = 65/221 (29%), Gaps = 70/221 (31%)
Query: 61 WITNGGVANWYFVLARTNPDP----KCPAS------KAFTGFIVERDTPGLTPG--RKVA 108
W+ N PD P S ++V G TPG R
Sbjct: 218 WLEN----------PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 109 AGAVGLAQRCL---------DEATKYALERKA----FGVPIAAHQAV------AFMLAD- 148
GA G +Q + + + RKA F + + ++A +L D
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 149 MAIGIEASRLTWM-------KAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGG 201
+ + M + + + + N+ + K + + N + V G
Sbjct: 328 LENNEGVP--SPMLSISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVN--GAKNL-VVSG 381
Query: 202 N-----GFNSDYPVEKLMRDAKIYQIYEGTAQI---QRLIV 234
G N + K + + Q ++I +R +
Sbjct: 382 PPQSLYGLNLT--LRKAKAPSGLDQ-----SRIPFSERKLK 415
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 59.0 bits (143), Expect = 2e-10
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 9/120 (7%)
Query: 107 VAAGAVGLAQRCLDEATKYALERKAF-GVPIAAHQAVAFMLADMAIGIEASRLTWMKAAA 165
+ A +G+ + L +R A G I V + + A I ASR++ ++ A
Sbjct: 258 ITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIETAD 317
Query: 166 EVD----LGRRNTLYASV----AKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDA 217
G+ T + AA A + A + GG + P+++ RDA
Sbjct: 318 RFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDA 377
Score = 37.0 bits (86), Expect = 0.003
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 44 TKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGL 101
A ++L G+ + + W F+ A A+ + I+ R +
Sbjct: 137 GVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDYQI 194
>1n13_B PVLARGDC, pyruvoyl-dependent arginine decarboxylase alpha chain;
pyruvoyl group, pyruvate, agmatine, lyase; 1.40A
{Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB:
1mt1_B 2qqd_B 2qqc_B
Length = 113
Score = 27.9 bits (62), Expect = 1.4
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 102 TPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADM 149
PG ++A A+ +A +E + A + V M
Sbjct: 32 VPGETISA-AISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIG 78
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 28.7 bits (64), Expect = 1.5
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 129 RKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVD 168
+K G + A + +L + A +VD
Sbjct: 114 KKETGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVD 153
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase;
HET: PE5; 1.93A {Bacillus subtilis}
Length = 527
Score = 28.6 bits (63), Expect = 2.0
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 68 ANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTP--GRKVAAGAV 112
A++ + T P +F ++D GL + G
Sbjct: 454 ADYRVMPFVTEPGAAISTRASFV---YQKDQTGLRKVSSTTIQGGVK 497
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 28.3 bits (64), Expect = 2.1
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 129 RKAFGVPIAAHQAVAFMLAD 148
+A +P+ H +
Sbjct: 67 VEALDLPVYLHPLDLPLYEG 86
>2gvi_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1
g.39.1.18
Length = 204
Score = 27.4 bits (60), Expect = 3.7
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 149 MAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGG 201
M +G A A L + + ++ + N C D Q G
Sbjct: 24 MPMGYRAGSY----ALKIAGLEKEKDHRTYLLSEMSPEDMNGCFNDGAQAATG 72
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Length = 410
Score = 27.6 bits (62), Expect = 4.2
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 23/57 (40%)
Query: 100 GLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQA--VAFMLA---DMAI 151
GL+ GRK+AA LA+ P+A H VA M +
Sbjct: 301 GLSEGRKIAA----LAE--------------THARPLAPHXTGPVALMAGLHLALHA 339
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa
GST, TRX domain, GSH binding, detoxification, APO form;
1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Length = 234
Score = 26.7 bits (59), Expect = 7.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 119 LDEATKYALERKAFGVP 135
L E T+ A AFG+P
Sbjct: 168 LKETTEAACRYGAFGLP 184
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase,
kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus}
SCOP: c.47.1.13
Length = 226
Score = 26.3 bits (58), Expect = 9.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 119 LDEATKYALERKAFGVP 135
L E T A + AFG+P
Sbjct: 168 LRETTGAACKYGAFGLP 184
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2;
HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB:
2oz3_A*
Length = 404
Score = 26.5 bits (59), Expect = 9.1
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 18/44 (40%)
Query: 100 GLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVA 143
G+T K++A LA A + H +
Sbjct: 299 GVTELLKISA----LAD--------------AHNALVVPHGSSV 324
>3u1x_A Putative glycosyl hydrolase; glycosyl hydrolysis, carbohydrate
metabolism,, structural GE joint center for structural
genomics, JCSG; HET: MSE PGE; 1.70A {Parabacteroides
distasonis}
Length = 236
Score = 26.3 bits (57), Expect = 9.4
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 14/74 (18%)
Query: 34 GAGSDVNGVKTKAVKKGDEW--------------ILNGQKMWITNGGVANWYFVLARTNP 79
G + +TK V EW LNG+K++ G +W
Sbjct: 143 GCNYAMYVPETKQVNPPGEWNSSMVLYKDGYVEHWLNGEKLFSFQEGSEDWKMRRYSGKW 202
Query: 80 DPKCPASKAFTGFI 93
+ + TG +
Sbjct: 203 EAFPDYGISTTGKL 216
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein
structure initiative (PSI) II, PSI-2, 9382A mandelate
racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Length = 393
Score = 26.5 bits (59), Expect = 9.6
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 18/44 (40%)
Query: 100 GLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVA 143
G+TP K+A+ LA+ G+ +A H A+
Sbjct: 294 GITPFLKIAS----LAE--------------HAGLMLAPHFAME 319
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,901,827
Number of extensions: 245434
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 148
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)