RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13265
(245 letters)
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 113 bits (284), Expect = 6e-32
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 20/164 (12%)
Query: 101 LTPGR-KVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQAVAFMLADMAIG 152
+ R + A A R + AT+Y+ R+ FG + ++ L +
Sbjct: 9 MVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLAS 68
Query: 153 IEASRLTWMKAAAEVDL------------GRRNTLYASVAKALAADVANKCATDAVQVFG 200
A R + K+L + ++ G
Sbjct: 69 AYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCG 128
Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
G+G+ + +L YEG + +L V+R +++
Sbjct: 129 GHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQ 172
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 107 bits (268), Expect = 4e-30
Identities = 72/141 (51%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
L R VAAG+VG+A+R LDEA KYA ER+AFG PIA QA+ F L DM IGIE +R+
Sbjct: 10 TLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARM 69
Query: 159 TWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAK 218
AA D G + +++AKA A+++A + A A+Q+ GG G+ ++PVEKL+RD K
Sbjct: 70 YTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVK 129
Query: 219 IYQIYEGTAQIQRLIVSRAII 239
+ QIYEGT +IQRLI++R I+
Sbjct: 130 LNQIYEGTNEIQRLIIARHIL 150
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 106 bits (266), Expect = 8e-30
Identities = 63/141 (44%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
L GR VAA A+G+A+ L +A +Y+ +R FG P+ Q+++F LADM + IEA+R
Sbjct: 10 TLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARN 69
Query: 159 TWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAK 218
KAA + G+ T+ A++AK +A+DVA + T+AVQ+FGG G++ +YPV + MRDAK
Sbjct: 70 LVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAK 129
Query: 219 IYQIYEGTAQIQRLIVSRAII 239
I QIYEGT ++Q ++ A++
Sbjct: 130 ITQIYEGTNEVQLMVTGGALL 150
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 107 bits (267), Expect = 7e-29
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+V GNEAQ++KYL +L+ + A ++EP AGSDV +K KA KKG+ +ILNG K
Sbjct: 101 NQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKF 160
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK 106
WIT G ++ PAS+ T FIVE+ PG + +K
Sbjct: 161 WIT-NGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKK 205
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 103 bits (257), Expect = 2e-28
Identities = 66/142 (46%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
L GR +AA AVGL Q LD A YA R+AFG PIA + V+F LA+ A +EA+RL
Sbjct: 10 VLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARL 69
Query: 159 TWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAK 218
++KAA D GR TL A+ AK A++ A K +A+Q+ GG G+ DYPVE+ RDA+
Sbjct: 70 LYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDAR 129
Query: 219 IYQIYEGTAQIQRLIVSRAIIE 240
+ +I EGT++I +L+++R ++E
Sbjct: 130 LTRIGEGTSEILKLVIARRLLE 151
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 102 bits (253), Expect = 7e-28
Identities = 57/145 (39%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
L GR +A+ A+G+AQ LD A KYA R AFG P+ Q + F LADMA+ +E++RL
Sbjct: 9 TLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARL 68
Query: 159 TWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAK 218
+AA D + T +++AK A++ A + A+Q+ GG G+ ++ P E+ RDA+
Sbjct: 69 LTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDAR 128
Query: 219 IYQIYEGTAQIQRLIVSRAIIEKAK 243
I +IYEGT++IQRL+++ ++ +
Sbjct: 129 ITEIYEGTSEIQRLVIAGHLLRSYR 153
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 100 bits (249), Expect = 7e-27
Identities = 19/158 (12%), Positives = 39/158 (24%), Gaps = 19/158 (12%)
Query: 107 VAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQAVAFMLADMAIGIEASRLT 159
+ A + A +Y+ R+ I Q + L + A
Sbjct: 8 LVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFV 67
Query: 160 WMKAAAEVDL------------GRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSD 207
+ KA AN + GG+G++
Sbjct: 68 GRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHS 127
Query: 208 YPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS 245
+ + +EG + L +R +++
Sbjct: 128 SGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQV 165
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 99.3 bits (246), Expect = 5e-26
Identities = 81/106 (76%), Positives = 94/106 (88%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+P++I GN QQKKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 96 VPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 155
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK 106
WITNGG ANWYF+LAR++PDPK PASKAFTGFIVE DTPG+ GRK
Sbjct: 156 WITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRK 201
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 95.4 bits (236), Expect = 3e-25
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 101 LTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLT 159
L R +A G +G ++ CL A +YAL+R FGVP+A +Q + LADM I
Sbjct: 8 LNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHA 67
Query: 160 WMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKI 219
++ D + S+ K A A A + GGNG + +Y V + + +
Sbjct: 68 CLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEA 127
Query: 220 YQIYEGTAQIQRLIVSRAI 238
YEGT I LI+ RAI
Sbjct: 128 VNTYEGTHDIHALILGRAI 146
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 93.5 bits (231), Expect = 1e-24
Identities = 100/145 (68%), Positives = 120/145 (82%), Gaps = 1/145 (0%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
R VAAGAVGLAQR LDEATKYALERK FG +A HQ ++F+LADMA+ +E +RL
Sbjct: 10 TFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARL 69
Query: 159 TWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAK 218
++ +AA E+D GRRNT YAS+AKA AAD+AN+ ATDAVQVFGGNGFN++YPVEKLMRDAK
Sbjct: 70 SYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAK 129
Query: 219 IYQIYEGTAQIQRLIVSRAIIEKAK 243
IYQIYEGTAQIQR+I++R I + K
Sbjct: 130 IYQIYEGTAQIQRIIIAREHIGRYK 154
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 93.2 bits (230), Expect = 2e-24
Identities = 47/144 (32%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
GL GR +A+ ++G A + + RK FG P+A++Q + F LADMA + A+RL
Sbjct: 10 GLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARL 69
Query: 159 TWMKA-AAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDA 217
A A + + S+AK A D A+Q+ GG G+ DY V++ +RD+
Sbjct: 70 MVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDS 129
Query: 218 KIYQIYEGTAQIQRLIVSRAIIEK 241
+++QI EG+ ++ R+++SR+++++
Sbjct: 130 RVHQILEGSNEVMRILISRSLLQE 153
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 88.6 bits (218), Expect = 1e-22
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
GL R +A G +GL Q LD Y R+AFG I Q + +ADM + A R
Sbjct: 9 GLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQ 68
Query: 159 TWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAK 218
A D G + +A+ A + A D +Q FGGNG+ +D+P+ + +RDAK
Sbjct: 69 YVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAK 128
Query: 219 IYQIYEGTAQIQRLIVSRAI 238
+Y+I GT++++RL++ RA
Sbjct: 129 LYEIGAGTSEVRRLVIGRAF 148
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 83.2 bits (204), Expect = 1e-20
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 100 GLTPGR-KVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRL 158
L GR VA G VG+ + C A +A R+ FG P+ HQ VA +AD+ + +
Sbjct: 9 SLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAAR 68
Query: 159 TWMKAAAEVD-LGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDA 217
A+ D +AK +AA+ A A A QV G + VE+ RDA
Sbjct: 69 VCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDA 128
Query: 218 KIYQIYEGTAQIQRLIVSRAII 239
K+ +I EG++++ R+++++ +
Sbjct: 129 KLMEIIEGSSEMCRVMLAQHAL 150
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 82.3 bits (202), Expect = 3e-20
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 107 VAAGAVGLAQRCLDEATKYALERKAFGV-PIAAHQAVAFMLADMAIGIEASRLTWMKAAA 165
V A A+G A+ +EA +A G I HQ+VA L D I +E SRL KA
Sbjct: 20 VGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVT 79
Query: 166 EVDLG----RRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQ 221
++ + A K DVA +C DA++ G + D +L+ + Y
Sbjct: 80 TLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYP 139
Query: 222 IYEGT------AQIQRLIVSR 236
+++G Q+QR++
Sbjct: 140 LFDGGNIGLRRRQMQRVMALE 160
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 83.0 bits (204), Expect = 8e-20
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+ GNE Q+ K+ L A+YC+TEPG+GSD + T A K+GD +ILNG K
Sbjct: 100 WMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKA 159
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK 106
+I+ G ++ Y V+ RT P K + +VE+ TPGL+ G+K
Sbjct: 160 FISGAGESDIYVVMCRTGG----PGPKGISCIVVEKGTPGLSFGKK 201
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 83.5 bits (206), Expect = 1e-19
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 14/137 (10%)
Query: 9 EAQQKKYLGRLVEEPIVAAYCVTEPGAGSDV-------NGVKTKAVKK-GDEWILNGQKM 60
+YL + E ++ +T+P + + + V+K D ++ G K
Sbjct: 128 HKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKA 187
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLD 120
T ++ + ++ F D GL R ++
Sbjct: 188 HQTGSINSHEHIIMPTIAMTEADK--DYAVSFACPSDADGLFMIYGRQ----SCDTRKME 241
Query: 121 EATKYALERKAFGVPIA 137
E L K FG A
Sbjct: 242 EGADIDLGNKQFGGQEA 258
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 79.3 bits (194), Expect = 2e-18
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
PV++AG E Q++++L L E+P +AA+ ++EPG GSD +KT+A+++GD ++LNG KM
Sbjct: 95 TPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKM 154
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK 106
WI+NGG A W V A NP+ + K +VER TPG +
Sbjct: 155 WISNGGEAEWVVVFATVNPELRH---KGVVALVVERGTPGFKAIKI 197
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 78.1 bits (191), Expect = 4e-18
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
+++AG+EAQ++ +L +L + A+ +TEPG+GSD +KTKA K W LNG K
Sbjct: 97 GHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQ 156
Query: 61 WITNGGVANWYFVLARTNPD-PKCPASKAFTGFIVERDTPGLTPGRK 106
+IT G VA Y V+ART+P + + F R GL GRK
Sbjct: 157 FITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRK 203
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 71.2 bits (173), Expect = 2e-15
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
P++ G+ Q+++++ + + ++EPG GSD T A ++GD W+LNG K
Sbjct: 98 GPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKA 157
Query: 61 WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK 106
WITN A+ V A T+ + K + F+V TPGLT G+K
Sbjct: 158 WITNSWEASATVVFASTDRSRQN---KGISAFLVPMPTPGLTLGKK 200
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 68.5 bits (166), Expect = 1e-14
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQK 59
P+ G EAQ++K+L LVE + A+ +TEP AG+D +G +T A K D + LNG K
Sbjct: 99 NPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSK 158
Query: 60 MWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK 106
++ITNGG A+ Y V A T+ T FI+E TPG T G+K
Sbjct: 159 IFITNGGAADIYIVFAMTDKSKGN---HGITAFILEDGTPGFTYGKK 202
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 60.9 bits (147), Expect = 1e-11
Identities = 33/115 (28%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDE-------WILNGQK 59
G E QQKK+L + I+ Y TE G GS+V G++T A K
Sbjct: 113 GTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASK 172
Query: 60 MWITNGG-VANWYFVLARTNPDPKCPASKAFTGFIVE-------RDTPGLTPGRK 106
W G V+ V AR + K GFIV+ P +T G
Sbjct: 173 WWPGGLGKVSTHAVVYARLITNGK---DYGIHGFIVQLRSLEDHSPLPNITVGDI 224
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 55.2 bits (132), Expect = 1e-09
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 18/115 (15%)
Query: 7 GNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQK 59
QQ+++ I Y TE G G+ + G++T A E+ILN K
Sbjct: 115 ATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIK 174
Query: 60 MWITNG-GVANWYFVLARTNPDPKCPASKAFTGFIV-------ERDTPGLTPGRK 106
W +N VLA+ +C F+V + PG+T G
Sbjct: 175 WWPGGLGKTSNHAIVLAQLITQGEC---YGLHAFVVPIREIGTHKPLPGITVGDI 226
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 53.3 bits (126), Expect = 5e-09
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 23 PIVAAYCVTEPGAGSDVNGVKTKAVKK-----GDEWILNGQKMWITNGGVA-----NWYF 72
+A+ +EP ++ ++ G+EW+++G+K+W +N G +
Sbjct: 125 EPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLAC 184
Query: 73 VLARTNPDPKCP------ASKAFTGFIVERDTPGLTPGRKVAAG 110
V+ R + DP P + +V R+T
Sbjct: 185 VVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQIL 228
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 45.8 bits (107), Expect = 1e-06
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 6 AGNEAQQKKYLGRLVEEPIVAAYCVTEPGA--GSDVNGVKTKAVKKGDEWILNGQKMWIT 63
G+E Q++KYL +L + ++ + +TEP + + + LNG K WIT
Sbjct: 109 YGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWIT 168
Query: 64 NGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK 106
N +A+ + V AR GF++E+ GL+ R
Sbjct: 169 NSPMADLFVVWARCEDGC-------IRGFLLEKGMRGLSAPRI 204
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 25.5 bits (54), Expect = 6.5
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 162 KAAAEVDLGRRNTLYASVAKALAADVA 188
+ A D +R LY + L +
Sbjct: 435 EVLATHDETQRQALYRDILTRLHDEAV 461
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA)
{Thermotoga maritima [TaxId: 2336]}
Length = 535
Score = 25.5 bits (54), Expect = 7.8
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 162 KAAAEVDLGRRNTLYASVAKALAADVA 188
+ D + + A +++ L D+
Sbjct: 457 ELNRSNDDAKIKEVVAKLSEILLKDLP 483
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage
Mu [TaxId: 10677]}
Length = 94
Score = 24.0 bits (52), Expect = 8.4
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 176 YASVAKALAADVANKCATDAVQVFGGNGFN--SDYPVEKLMRDAKIYQIYEG 225
V A + ++ + GG ++ L+RD +I+ + G
Sbjct: 19 RLGVDPAHSLEIVVAIC----KHLGGGQVYIPRGQALDSLIRDLRIWNDFNG 66
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
{Salmonella typhimurium [TaxId: 90371]}
Length = 517
Score = 25.4 bits (54), Expect = 9.3
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 162 KAAAEVDLGRRNTLYASVAKALAADVA 188
D +R+ LYA + L D A
Sbjct: 452 DTLKVADDTQRSELYAKAEQQLDKDSA 478
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 900,067
Number of extensions: 40627
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 29
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)