BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13266
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C44|A Chain A, Sterol Carrier Protein 2 (Scp2) From Rabbit
Length = 123
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
FK + +FK +E + ++ + V+ G++AF+V++GPGGK W+++ GKG + N
Sbjct: 7 FKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSD 66
Query: 218 DKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAG 270
K + T + D D++ L++GK++PQ AFFQ KLKI GNMGLAMKL LQ Q G
Sbjct: 67 KKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPG 119
>pdb|1QND|A Chain A, Sterol Carrier Protein-2, Nmr, 20 Structures
Length = 123
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
FK + +FK +E + ++ + V+ G++AF+V++GPGGK W+++ GKG + N
Sbjct: 7 FKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSD 66
Query: 218 DKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAG 270
K + T + D D + L++GK++PQ AFFQ KLKI GNMGLAMKL LQ Q G
Sbjct: 67 KKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPG 119
>pdb|2C0L|B Chain B, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 122
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
FK + +FK +E + ++ + V+ G++AF+V++GPGGK W+++ GKG + N
Sbjct: 6 FKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSD 65
Query: 218 DKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAG 270
K + T + D D + L++GK++PQ AFFQ KLKI GNMGLAMKL LQ Q G
Sbjct: 66 KKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPG 118
>pdb|1IKT|A Chain A, Liganded Sterol Carrier Protein Type 2 (Scp-2) Like Domain
Of Human Multifunctional Enzyme Type 2 (Mfe-2)
Length = 120
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 163 MFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGTDK--P 220
+F+ + + D +V+ V+ + + G G +W I+ +G GK+ Y G K
Sbjct: 11 VFEEIGRRLKDIGPEVVKKVNAVFEWHITKG-GNIGAKWTIDLKSGSGKV-YQGPAKGAA 68
Query: 221 EVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQK 267
+ T I++D D ++++ GKLDPQKAFF +LK +GN+ L+ KL + K
Sbjct: 69 DTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQMILK 115
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 18/90 (20%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A ++ E T ++ DID+ E+++ F+A L LG+ D +
Sbjct: 298 AIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGI-------DL-----------NK 339
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLR 94
VNP GG I+ GHPLG TG Q A + +L+
Sbjct: 340 VNPRGGAIALGHPLGCTGARQVATILRELK 369
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 18/90 (20%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A ++ E T ++ DID+ E+++ F+A L LG+ D +
Sbjct: 295 AIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGI-------DL-----------NK 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLR 94
VNP GG I+ GHPLG TG Q A + +L+
Sbjct: 337 VNPRGGAIALGHPLGCTGARQVATILRELK 366
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 11 EKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGG 70
+K + SD+D+ E+++ F++ E L L P VNP GG
Sbjct: 324 QKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPP------------------EKVNPLGG 365
Query: 71 LISKGHPLGATGLAQCAELCWQLRGEAGKR 100
++ GHPLG TG Q L +L+ GKR
Sbjct: 366 AVALGHPLGCTGARQVITLLNELK-RRGKR 394
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E H+ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + E+ + SD+ +IEL++ F+A L L +D
Sbjct: 301 ATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLS----MED------------QR 344
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
+NP+GG I+ GHPLGA+G L ++R +R+V + +G G A +V
Sbjct: 345 LNPNGGAIALGHPLGASGARILTTLVHEMR----RRKVQFGLATMCIGVGQGIAVVV 397
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 292 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 333
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 334 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 389
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E H+ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ G+P+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGNPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 292 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 333
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 334 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 389
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E + F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + +K + +DID+IE ++ F+A L L IDS
Sbjct: 299 ATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQ----------IDSSK-------- 340
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVA 122
+N +GG I+ GHP+GA+G L ++++ KR+V L G G + +V+
Sbjct: 341 LNVNGGAIALGHPIGASGARILVTLIYEMQ----KRKVETGLATLCIGGGQGISMVVS 394
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 19 DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHPL 78
DID+ E+++ F++ + LGL P +N +GG ++ GHPL
Sbjct: 334 DIDLFEINEAFASQFVYCRNKLGLDP------------------EKINVNGGAMAIGHPL 375
Query: 79 GATGLAQCAELCWQLR 94
GATG A L +++
Sbjct: 376 GATGARCVATLLHEMK 391
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 19 DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHPL 78
DID+ E+++ F++ + LGL P +N +GG ++ GHPL
Sbjct: 317 DIDLFEINEAFASQFVYCRNKLGLDP------------------EKINVNGGAMAIGHPL 358
Query: 79 GATGLAQCAELCWQLR 94
GATG A L +++
Sbjct: 359 GATGARCVATLLHEMK 374
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ G+P+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGNPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ G+P+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGNPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 11 EKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGG 70
+K + SDIDV E ++ F+A L + LGL + ID +N +GG
Sbjct: 293 KKAGLSASDIDVFEXNEAFAAQILPCIKDLGL------XEQIDEK---------INLNGG 337
Query: 71 LISKGHPLGATG 82
I+ GHPLG +G
Sbjct: 338 AIALGHPLGCSG 349
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ G P+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGL--ATLXIGGGMGV-AMCIESL 392
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 18/64 (28%)
Query: 19 DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHPL 78
D+D+ E+++ F+A + LGL P VN GG I+ GHPL
Sbjct: 314 DVDIFEINEAFAAVSAAIVKELGLNP------------------EKVNIEGGAIALGHPL 355
Query: 79 GATG 82
GA+G
Sbjct: 356 GASG 359
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ G P+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGL--ATLXIGGGMGV-AMCIESL 392
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ G P+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ G P+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 22/117 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A ++ ++ + DID+ EL++ F++ L + L +
Sbjct: 310 ATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIP------------------DEK 351
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
+N +GG I+ GHPLGATG A + + E +R A + L G+G A I+
Sbjct: 352 LNVNGGAIAMGHPLGATG----AMITGTMVDELERRNARRALITLCIGGGMGVATII 404
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + E + DID++E ++ F+A + L + +
Sbjct: 300 ATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNI------------------DMNK 341
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
VN +GG I+ GHP+G +G L ++++ +R L G+G IV
Sbjct: 342 VNVNGGAIAIGHPIGCSGARILTTLLYEMK----RRDAKTGLATLCIGGGMGTTLIV 394
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + ++ + +DID IEL++ F+A L PV K +D
Sbjct: 290 ATQKALKRAGLNMADIDFIELNEAFAAQAL---------PVLKDLKVLDKM------NEK 334
Query: 65 VNPSGGLISKGHPLGATG 82
VN GG I+ GHP G +G
Sbjct: 335 VNLHGGAIALGHPFGCSG 352
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 19 DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHPL 78
DID+ E+++ F++ + + L + P +N +GG ++ GHPL
Sbjct: 337 DIDLFEINEAFASQFVYCQKKLEIDP------------------QKINVNGGAMAIGHPL 378
Query: 79 GATGLAQCAELCWQLR 94
GATG A L +++
Sbjct: 379 GATGARCVATLLHEMK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
AA + + +K DI + E+++ FS L + L + P
Sbjct: 311 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDP------------------QK 352
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLR-GEAGKRQVPN 104
VN +GG +S GHP+G +G L L+ GE G + N
Sbjct: 353 VNINGGAVSLGHPIGMSGARIVGHLTHALKQGEYGLASICN 393
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 28/123 (22%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
AA + + +K DI + E+++ FS L + L + P
Sbjct: 300 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDP------------------QK 341
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLR-GEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG +S GHP+G +G L L+ GE G + N G GGA + +
Sbjct: 342 VNINGGAVSLGHPIGMSGARIVGHLTHALKQGEYGLASICN---------GGGGASAMLI 392
Query: 124 YRL 126
+L
Sbjct: 393 QKL 395
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
AA + + +K DI + E+++ FS L + L + P
Sbjct: 300 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDP------------------QK 341
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLR-GEAGKRQVPN 104
VN +GG +S GHP+G +G L L+ GE G + N
Sbjct: 342 VNINGGAVSLGHPIGMSGARIVGHLTHALKQGEYGLASICN 382
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E + F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E + F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDP------------------SI 336
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
VN +GG I+ GHP+GA+G L ++++ ++ + A L + +G+ CI +L
Sbjct: 337 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL--ATLCIGGGMGV-AMCIESL 392
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 26/114 (22%)
Query: 11 EKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGG 70
EK D D++E+++ F+A L + L L + VN +G
Sbjct: 303 EKVDWSLEDADLLEINEAFAAQYLAVEKELDL------------------DREKVNVNGS 344
Query: 71 LISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVALY 124
+ GHP+G TG L +L+ ++ + +L +GG VAL+
Sbjct: 345 GVGLGHPIGCTGARITVSLIHELKRRGLEKGIA--------SLCVGGGIGVALF 390
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,944,239
Number of Sequences: 62578
Number of extensions: 406547
Number of successful extensions: 941
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 42
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)