RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13266
(280 letters)
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 268 bits (687), Expect = 2e-88
Identities = 97/125 (77%), Positives = 109/125 (87%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYG 60
MT+AAA ++YE+ I P DIDV+ELHDCFSANEL+TYEALGLCP G+A+ FID G NTYG
Sbjct: 265 MTRAAAQQVYEQAGIGPEDIDVVELHDCFSANELLTYEALGLCPEGEAEKFIDDGDNTYG 324
Query: 61 GKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACI 120
G+ VVNPSGGL+SKGHPLGATGLAQCAEL WQLRG AG RQV ARLALQHNLGLGGAC+
Sbjct: 325 GRWVVNPSGGLLSKGHPLGATGLAQCAELTWQLRGTAGARQVEGARLALQHNLGLGGACV 384
Query: 121 VALYR 125
V LY+
Sbjct: 385 VTLYQ 389
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 198 bits (506), Expect = 1e-61
Identities = 64/124 (51%), Positives = 75/124 (60%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYG 60
+ AA R Y+ I P DIDV EL+DCF+ EL+ E LG C G+ + G G
Sbjct: 252 AARLAARRAYKMAGITPDDIDVAELYDCFTIAELLALEDLGFCEKGEGGKLVREGDTAIG 311
Query: 61 GKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACI 120
G VN SGGL+SKGHPLGATGLAQ E QLRGEAG RQVP AR+ L HN+G G+
Sbjct: 312 GDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGEAGARQVPGARVGLAHNIGGTGSAA 371
Query: 121 VALY 124
V
Sbjct: 372 VVTI 375
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 175 bits (444), Expect = 2e-52
Identities = 63/124 (50%), Positives = 80/124 (64%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYG 60
AA + EK + D+D+IE HD F+AN T EALGLCP G+ +D G NTYG
Sbjct: 270 GPIEAARKALEKAGLGIGDLDLIEAHDAFAANACATNEALGLCPEGQGGALVDRGDNTYG 329
Query: 61 GKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACI 120
GK ++NP+GG I+ GHP+GA+G A CAELC++L+GEAGKRQ A LAL G GGA +
Sbjct: 330 GKSIINPNGGAIAIGHPIGASGAAICAELCFELKGEAGKRQGAGAGLALLCIGGGGGAAM 389
Query: 121 VALY 124
Sbjct: 390 CIES 393
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 150 bits (380), Expect = 9e-43
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 2 TKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGG 61
AA++ Y+ I+P DIDV E+HDCF+ E++ YE LG G+ G GG
Sbjct: 260 AVVAAEKAYKMAGIEPKDIDVAEVHDCFTIAEILAYEDLGFAKKGEGGKLAREGQTYIGG 319
Query: 62 KHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEA--GKRQVPNARLALQHNL-GLGGA 118
VNPSGGL +KGHP+GATG++Q E+ WQLRGEA G++QV A L HN+ G G
Sbjct: 320 DIPVNPSGGLKAKGHPVGATGVSQAVEIVWQLRGEAEKGRQQVIGAGYGLTHNVGGTGHT 379
Query: 119 CIVALYRL 126
+V +
Sbjct: 380 AVVHILSR 387
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 120 bits (302), Expect = 1e-31
Identities = 55/123 (44%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 2 TKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGG 61
+ A R + + D+ +E HDCF+ ELI YEA+GL P G+ I G G
Sbjct: 262 PRRAWQRALAQAGVTLDDLSFVETHDCFTIAELIEYEAMGLAPPGQGARAIREGWTAKDG 321
Query: 62 KHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
K VNPSGGL +KGHP+GATG++ QL GEAG Q+P A+LA N+G G A V
Sbjct: 322 KLPVNPSGGLKAKGHPIGATGVSMHVLAAMQLTGEAGGMQIPGAKLAGVFNMG-GAA--V 378
Query: 122 ALY 124
A Y
Sbjct: 379 ANY 381
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 120 bits (302), Expect = 2e-31
Identities = 45/126 (35%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 2 TKAAADRLYEKTQIKPS--DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTY 59
AA R Y + PS D V +HD + L+ E LGL G+A + G
Sbjct: 267 APLAAIRAYAMAGVDPSIMDGPVAAVHDALTIAGLLALEDLGLAEKGEAFAAVALGVTKI 326
Query: 60 GGKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGAC 119
G VNPSGG I+ GHP+GATG EL QLRG V R +G GG
Sbjct: 327 LGDLPVNPSGGAIALGHPIGATGARILVELARQLRGRGQ--VVAKRRGLATLCIGGGGQG 384
Query: 120 IVALYR 125
+ A+
Sbjct: 385 VAAVLE 390
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 117 bits (295), Expect = 2e-30
Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 2 TKAAADRLYEKTQIK-P-SDIDVIELHDCFSANELITYEALGLCPVGKA-KDFIDSGANT 58
T+ AA + Y + I P ++ + E+HDCFS EL+T E LGL G+A +D +D G
Sbjct: 268 TRIAARKAYREAGITDPREELSMAEVHDCFSITELVTMEDLGLSERGQAWRDVLD-GFFD 326
Query: 59 YGGKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLG 114
G GGL GHP+GA+GL E+ QL G AG+RQ+ N RLAL HNLG
Sbjct: 327 ADGGLPCQIDGGLKCFGHPIGASGLRMLYEMYLQLLGRAGERQLKNPRLALTHNLG 382
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 117 bits (294), Expect = 2e-30
Identities = 54/112 (48%), Positives = 69/112 (61%)
Query: 6 ADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVV 65
D Y + I P D+ + E++D +A EL YE LGLCP G+A+ + SGA T GG+ V
Sbjct: 279 LDAAYAEAGIGPEDLSLAEVYDLSTALELDWYEHLGLCPKGEAEALLRSGATTLGGRIPV 338
Query: 66 NPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGG 117
NPSGGL G + A +AQ EL WQLRG+AG RQV AR+ + N GL G
Sbjct: 339 NPSGGLACFGEAIPAQAIAQVCELTWQLRGQAGGRQVEGARVGITANQGLFG 390
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 116 bits (292), Expect = 4e-30
Identities = 53/114 (46%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Query: 2 TKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGG 61
T+ AA + Y ++ P+DI+V +HD F+ E++ YE LG GK FI+ G + GG
Sbjct: 259 TQLAARQAYNMAKVTPNDIEVATVHDAFTIAEIMGYEDLGFTEKGKGGKFIEEGQSEKGG 318
Query: 62 KHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNAR-LALQHNLG 114
K VN GGL +KGHPLGATGL+ E+ QLR EAGK Q P + + L HN+G
Sbjct: 319 KVGVNLFGGLKAKGHPLGATGLSMIYEITKQLRDEAGKLQQPLKKYIGLVHNVG 372
>gnl|CDD|235785 PRK06365, PRK06365, acetyl-CoA acetyltransferase; Provisional.
Length = 430
Score = 109 bits (275), Expect = 1e-27
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Query: 3 KAAADRLYEKTQIK-PS-DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYG 60
+ AA YE I P D+D+IELHD ++++E+ TYE LGLC G+ FI+SG
Sbjct: 296 RMAAKEAYEMAGITDPLNDLDLIELHDAYTSSEIQTYEDLGLCKYGEGGQFIESGKPELP 355
Query: 61 GKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKR------QVPNARLALQHN 112
GK VNPSGGL++ GH +GATG+ Q + WQL+G K QV NA+ L H+
Sbjct: 356 GKLPVNPSGGLLAAGHAVGATGIMQAVFMFWQLQGRIKKHFHDDYLQVKNAKRGLIHS 413
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 109 bits (275), Expect = 2e-27
Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 2 TKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGG 61
++AAA + +KPSD+ V E+HDCF+ EL+ YEALG+ G AKD I +GA G
Sbjct: 311 SRAAAQKALSMAGVKPSDLQVAEVHDCFTIAELLMYEALGIAEYGHAKDLIRNGATALEG 370
Query: 62 KHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGG 117
+ VN GGL+S GHP+GATG+ Q E+ Q++G+ G+ Q+ N AL L +GG
Sbjct: 371 RIPVNTGGGLLSFGHPVGATGVKQIMEVYRQMKGQCGEYQMKNI-PALGATLNMGG 425
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 103 bits (259), Expect = 2e-25
Identities = 39/113 (34%), Positives = 62/113 (54%)
Query: 2 TKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGG 61
+ A Y + + D+D E+HDCF+ +E + + +GL G++ I++G GG
Sbjct: 278 VRQAVLDAYRRAGVGLDDLDGFEVHDCFTPSEYLAIDHIGLTGPGESWKAIENGEIAIGG 337
Query: 62 KHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLG 114
+ +NPSGGLI GHP+GA+G+ + Q+ G AG QV A+ N+G
Sbjct: 338 RLPINPSGGLIGGGHPVGASGVRMLLDAAKQVTGTAGDYQVEGAKTFGTLNIG 390
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 96.4 bits (240), Expect = 1e-23
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 17/123 (13%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYG 60
AA + E + PSDID +E H + ALGL P G
Sbjct: 146 GLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGV------------- 192
Query: 61 GKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGK--RQVPNARLALQHNLGLGGA 118
S LI GHPLGA GLA EL L E + P L L LG A
Sbjct: 193 --RSPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPTPREPRTVLLLGFGLGGTNA 250
Query: 119 CIV 121
+V
Sbjct: 251 AVV 253
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 94.3 bits (235), Expect = 3e-22
Identities = 51/119 (42%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 2 TKAAAD---RLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANT 58
AAA+ R + + P+DIDV+EL+D F+ N ++ E LG C G+ F++ G
Sbjct: 253 VTAAAESGPRAFAMAGLTPADIDVVELYDAFTINTILFLEDLGFCAKGEGGAFVEGGRIA 312
Query: 59 YGGKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGG 117
GG+ VN +GG +S HP G GL E QLRGEAG+RQV A +AL H G GG
Sbjct: 313 PGGRLPVNTNGGGLSCVHP-GMYGLFLLIEAVRQLRGEAGERQVAGAEVALAH--GNGG 368
>gnl|CDD|181378 PRK08313, PRK08313, acetyl-CoA acetyltransferase; Provisional.
Length = 386
Score = 86.7 bits (215), Expect = 2e-19
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 4 AAADRLYEKTQIKP--SDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGG 61
AAA L++ I +IDV E++ FS E + E LG P G+ ++G GG
Sbjct: 260 AAAA-LWKAAGITDPRDEIDVAEIYVPFSWFEPMWLENLGFAPEGEGWKLTEAGETAIGG 318
Query: 62 KHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
+ VNPSGG++S +P+GA+G+ + AE Q+ G+AG+ QV AR AL H G GG+
Sbjct: 319 RLPVNPSGGVLS-SNPIGASGMIRFAEAALQVMGKAGEHQVDGARKALGHAYG-GGSQFF 376
Query: 122 ALYRLG 127
+++ +G
Sbjct: 377 SMWVVG 382
>gnl|CDD|216855 pfam02036, SCP2, SCP-2 sterol transfer family. This domain is
involved in binding sterols. It is found in the SCP2
protein, as well as the C terminus of the enzyme
estradiol 17 beta-dehydrogenase EC:1.1.1.62. The UNC-24
protein contains an SPFH domain pfam01145.
Length = 100
Score = 76.9 bits (190), Expect = 5e-18
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 164 FKLLESAMNDDDDNLVEGFRG-VYAFEVRNGPGGKSGRWIINTSTGKGKITYNGTDKPEV 222
L + ++ G V F++ + ++ G G + + +V
Sbjct: 1 LNQLLERDPAAKE-ALKKLAGKVIRFDLTDLGLS----LYLDFKDGGGDVGSGDEGEADV 55
Query: 223 TFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQK 267
T + D++ L +GKLDP AF Q KLKI+G++ LA KL+ L K
Sbjct: 56 TLSASLSDLLALATGKLDPTTAFMQGKLKIEGDIELAQKLSNLLK 100
>gnl|CDD|180379 PRK06065, PRK06065, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 78.3 bits (193), Expect = 2e-16
Identities = 34/85 (40%), Positives = 45/85 (52%)
Query: 19 DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHPL 78
+IDV E +D F EL E L L G+A + G G +PSGGL+ G+P+
Sbjct: 283 EIDVAEPYDPFDYKELHHLEGLQLAKRGEAPKLLKEGVFDIDGDIPSSPSGGLLGVGNPI 342
Query: 79 GATGLAQCAELCWQLRGEAGKRQVP 103
A GL + + WQL+G AGK QV
Sbjct: 343 AAAGLMKVISIYWQLKGTAGKMQVK 367
>gnl|CDD|180380 PRK06066, PRK06066, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 76.7 bits (189), Expect = 5e-16
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 2 TKAAADRLYEKTQI-KPS-DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTY 59
+ AAD Y+ I P ++D E+ D +S EL EAL L + + G
Sbjct: 258 MRIAADMAYKMAGIESPRKEVDAAEVDDRYSYKELQHIEALRLSEEPEKDSLLREGNFDP 317
Query: 60 GGKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQH 111
G+ VNPSGG ++KG PL A+GL+ + LRGEAG RQ A A+
Sbjct: 318 QGELPVNPSGGHLAKGVPLEASGLSLLLDAVEYLRGEAGARQ-GKAERAVVA 368
>gnl|CDD|181147 PRK07855, PRK07855, lipid-transfer protein; Provisional.
Length = 386
Score = 74.2 bits (183), Expect = 4e-15
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A +L+ ++ + P+DID L+D F+ L+ E LG C G+AKDFI GA GG+
Sbjct: 271 VARQLWAQSGLGPADIDTAILYDHFTPFVLMQLEELGFCGRGEAKDFIADGALELGGRLP 330
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLAL 109
+N GG + + + G G+ AE QLRG + QVP L
Sbjct: 331 INTHGGQLGEAYIHGMNGI---AEAVRQLRGTS-VNQVPGVENVL 371
>gnl|CDD|236164 PRK08142, PRK08142, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 64.3 bits (157), Expect = 9e-12
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 8 RLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYG-GKHVVN 66
+ + + P+DI ++D F+ L+ E LG C G+ F+ G G GK N
Sbjct: 263 AAFAEAGVTPADIKYASIYDSFTITVLMQLEDLGFCKKGEGGKFVADGNLISGVGKLPFN 322
Query: 67 PSGGLISKGHPLGATGLAQCAELCWQLRGEAG-KRQVPNARLALQHNLGLGGA 118
GG + HP G+ + E QLRGEA QVPN LAL H G GG
Sbjct: 323 TDGGGLCNNHPANRGGMTKVIEAVRQLRGEAHPAVQVPNCDLALAH--GTGGL 373
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 59.8 bits (146), Expect = 3e-10
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + ++ + DID+IE+++ F+A L + LGL K
Sbjct: 290 AIPKALKRAGLTLDDIDLIEINEAFAAQALACLKELGL-DPEK----------------- 331
Query: 65 VNPSGGLISKGHPLGATG 82
VN +GG I+ GHPLGA+G
Sbjct: 332 VNVNGGAIALGHPLGASG 349
>gnl|CDD|181173 PRK07937, PRK07937, lipid-transfer protein; Provisional.
Length = 352
Score = 55.5 bits (134), Expect = 7e-09
Identities = 40/115 (34%), Positives = 50/115 (43%), Gaps = 25/115 (21%)
Query: 2 TKAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGG 61
T AA+ T +DV ELH F+ ELI EALGL G
Sbjct: 252 TALAAEAA---TGGDAGGVDVAELHAPFTHQELILREALGL-----------------GD 291
Query: 62 KHVVNPSGGLISKGHPLGATGLAQCAELCWQ-LRGEAGKRQVPNARL--ALQHNL 113
K VNPSGG ++ +P+ A GL + E G A R + +A ALQ NL
Sbjct: 292 KTKVNPSGGALA-ANPMFAAGLERIGEAARHIWDGSAR-RALAHATSGPALQQNL 344
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 54.0 bits (130), Expect = 3e-08
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A +L + + DVIEL++ F+A L LGL D A
Sbjct: 301 ATQKLLARAGLSIDQFDVIELNEAFAAQALAVLRELGLA---------DDDAR------- 344
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKR 100
VNP+GG I+ GHPLGA+G QL G+
Sbjct: 345 VNPNGGAIALGHPLGASGARLVLTALRQLERSGGRY 380
>gnl|CDD|145779 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 123
Score = 50.7 bits (122), Expect = 3e-08
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 31/116 (26%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + +K + +DID+ E+++ F+A L + LG+ P
Sbjct: 27 AIPKALKKAGLTVNDIDLFEINEAFAAQALAVAKDLGIDP------------------EK 68
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACI 120
VN +GG I+ GHPLGA+G L +L+ GK GL CI
Sbjct: 69 VNVNGGAIALGHPLGASGARILVTLLHELKRRGGK-------------YGLATLCI 111
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 52.3 bits (126), Expect = 8e-08
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A +L + + DVIEL++ F+A L LGL D A
Sbjct: 302 ATRKLLARLGLTIDQFDVIELNEAFAAQGLAVLRQLGLA---------DDDAR------- 345
Query: 65 VNPSGGLISKGHPLGATG 82
VNP+GG I+ GHPLG +G
Sbjct: 346 VNPNGGAIALGHPLGMSG 363
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 50.7 bits (122), Expect = 3e-07
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 22/117 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + +K + SDID+ E+++ F+A L + LGL K
Sbjct: 291 AIPKALKKAGLSISDIDLFEINEAFAAQVLACIKELGLDL---EK--------------- 332
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
VN +GG I+ GHPLGA+G L +L+ G+ + + G G A I+
Sbjct: 333 VNVNGGAIALGHPLGASGARIVTTLLHELKRRGGRYGL----ATICIGGGQGIAVIL 385
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 50.8 bits (122), Expect = 3e-07
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 18/97 (18%)
Query: 3 KAAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGK 62
A ++ +K D+D IEL++ F+A L LGL P +K
Sbjct: 300 IEAIPAALKQAGLKQDDLDWIELNEAFAAQSLAVIRDLGLDP---SK------------- 343
Query: 63 HVVNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGK 99
VNP GG I+ GHPLGATG + A + LR K
Sbjct: 344 --VNPLGGAIALGHPLGATGAIRTATVVHGLRRTNLK 378
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 50.3 bits (121), Expect = 3e-07
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + E+ + +D+DVIE ++ F+A LGL P AK
Sbjct: 297 ATQKALERAGLTVADLDVIEANEAFAAQACAVTRELGLDP---AK--------------- 338
Query: 65 VNPSGGLISKGHPLGATG 82
VNP+G IS GHP+GATG
Sbjct: 339 VNPNGSGISLGHPVGATG 356
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 48.6 bits (116), Expect = 1e-06
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A +L + + DVIEL++ F++ L LGL D A
Sbjct: 301 ATQKLLARLGMTLDQFDVIELNEAFASQGLAVLRELGLA---------DDDAR------- 344
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKR 100
VNP+GG I+ GHPLGA+G +QL G+
Sbjct: 345 VNPNGGAIALGHPLGASGARLVTTALYQLERTGGRF 380
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 45.3 bits (108), Expect = 1e-05
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + K + DID+ EL++ F++ L +AL + P K
Sbjct: 305 ATRKALAKAGLTVDDIDLFELNEAFASVVLRFMQALDI-PHDK----------------- 346
Query: 65 VNPSGGLISKGHPLGATG 82
VN +GG I+ GHPLGATG
Sbjct: 347 VNVNGGAIAMGHPLGATG 364
>gnl|CDD|225794 COG3255, COG3255, Putative sterol carrier protein [Lipid
metabolism].
Length = 134
Score = 43.2 bits (102), Expect = 2e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 216 GTDKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKL 262
D P+ T + + +D+I+GKL+P AF KLK++G M AMKL
Sbjct: 68 APDPPDFTLGASLDNWLDIITGKLNPTSAFMTGKLKVEGGMLSAMKL 114
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 43.9 bits (104), Expect = 4e-05
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + EK + DID+ E+++ F+ L + LGL P
Sbjct: 297 ASKKALEKAGLSVKDIDLWEINEAFAVVVLYAIKELGLDP------------------ET 338
Query: 65 VNPSGGLISKGHPLGATG 82
VN GG I+ GHPLGATG
Sbjct: 339 VNIKGGAIAIGHPLGATG 356
>gnl|CDD|225696 COG3154, COG3154, Putative lipid carrier protein [Lipid
metabolism].
Length = 168
Score = 42.4 bits (100), Expect = 5e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 200 RWIINTSTGKGKITYNGTDKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNM--G 257
RW + GK+ + + +V+F + D++ L GK DP FFQ +L I+G+ G
Sbjct: 63 RWFV--EPVNGKLVVSRKAQADVSFSGDLFDLLALAEGKQDPDTLFFQRRLVIEGDTELG 120
Query: 258 LAMK 261
LA+K
Sbjct: 121 LAVK 124
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 43.0 bits (101), Expect = 1e-04
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A +L+EK + +++D+ E+++ F+ + + GL P K
Sbjct: 300 AIRKLFEKNGWRAAEVDLFEINEAFAVVTMAAMKEHGL-PHEK----------------- 341
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVP 103
VN +GG + GHP+GA+G L LR GKR V
Sbjct: 342 VNVNGGACALGHPIGASGARILVTLIGALRARGGKRGVA 380
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 42.7 bits (101), Expect = 1e-04
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 4 AAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKH 63
A ++ + + DID+IEL++ F+A L + G + +
Sbjct: 302 PATEKALARAGLTLDDIDLIELNEAFAAQVLAVLKEWGFGADDEER-------------- 347
Query: 64 VVNPSGGLISKGHPLGATG 82
+N +G IS GHP+GATG
Sbjct: 348 -LNVNGSGISLGHPVGATG 365
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 42.4 bits (100), Expect = 1e-04
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 18/72 (25%)
Query: 11 EKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGG 70
EKT + DIDV+E+++ F+ L + G P AK VNP+GG
Sbjct: 291 EKTGLSIDDIDVVEINEAFAPVVLAWLKETGADP---AK---------------VNPNGG 332
Query: 71 LISKGHPLGATG 82
I+ GHPLGATG
Sbjct: 333 AIALGHPLGATG 344
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 42.1 bits (99), Expect = 2e-04
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 19/69 (27%)
Query: 18 SDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHP 77
DID+ E+++ F++ + + LGL P K VN +GG I+ GHP
Sbjct: 349 DDIDLFEINEAFASQFVYCCKKLGLDP---EK---------------VNVNGGAIALGHP 390
Query: 78 LGATGLAQC 86
LGATG A+C
Sbjct: 391 LGATG-ARC 398
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 41.7 bits (98), Expect = 3e-04
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 16/64 (25%)
Query: 19 DIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHPL 78
D+D+IE+++ F++ L + LG+ DF D VNP+GG I+ GHPL
Sbjct: 315 DMDIIEINEAFASQVLGCLKGLGV-------DFDDPR---------VNPNGGAIAVGHPL 358
Query: 79 GATG 82
GA+G
Sbjct: 359 GASG 362
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 40.1 bits (94), Expect = 8e-04
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + L EKT DID+ E+++ F+A L + E G+ P
Sbjct: 296 AINALLEKTGKTVEDIDLFEINEAFAAVALASTEIAGIDP------------------EK 337
Query: 65 VNPSGGLISKGHPLGATG 82
VN +GG ++ GHP+GA+G
Sbjct: 338 VNVNGGAVALGHPIGASG 355
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 39.9 bits (94), Expect = 0.001
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 18 SDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHP 77
SDIDV EL++ F+A L + LGL K VN +GG I+ GHP
Sbjct: 300 SDIDVFELNEAFAAQSLPCLKDLGLLDKMDEK---------------VNLNGGAIALGHP 344
Query: 78 LGATG 82
LG +G
Sbjct: 345 LGCSG 349
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 39.5 bits (92), Expect = 0.001
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 15/78 (19%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + ++ + SDIDV EL++ F+A L + LGL K
Sbjct: 285 ATQKALKRAGLSISDIDVFELNEAFAAQALPCLKDLGLLDKMDEK--------------- 329
Query: 65 VNPSGGLISKGHPLGATG 82
VN +GG I+ GHPLG +G
Sbjct: 330 VNLNGGAIALGHPLGCSG 347
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 39.4 bits (93), Expect = 0.001
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 18/72 (25%)
Query: 11 EKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGG 70
EK +D+D+IE+++ F+A L + LGL P VN +GG
Sbjct: 302 EKAGWSLADLDLIEINEAFAAQALAVEKELGLDP------------------EKVNVNGG 343
Query: 71 LISKGHPLGATG 82
I+ GHP+GA+G
Sbjct: 344 AIALGHPIGASG 355
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 37.8 bits (88), Expect = 0.004
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 26/119 (21%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A ++L + +K DID E+++ F++ + + L + P K
Sbjct: 263 AVNKLLNEMNMKVEDIDYFEINEAFASKVVACAKELQI-PYEK----------------- 304
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIVAL 123
+N +GG I+ GHP GA+G L +Q + E K + LG+GG +AL
Sbjct: 305 LNVNGGAIALGHPYGASGAMLVTRLFYQAKREDMKYGIA--------TLGIGGGIGLAL 355
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 37.7 bits (88), Expect = 0.005
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 18/65 (27%)
Query: 18 SDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHP 77
DID++E+++ F+A L + LG+ K +N SGG I+ GHP
Sbjct: 321 DDIDLVEINEAFAAQVLPSARELGI-DEDK-----------------LNVSGGAIALGHP 362
Query: 78 LGATG 82
G TG
Sbjct: 363 FGMTG 367
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 36.9 bits (85), Expect = 0.009
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 11 EKTQIKPSDIDVIELHDCFSANELITYEALGLC-----PVGKAKDFIDSGANTYGGKHVV 65
++ + SD+ +I++H+ F+A L + +G++K + + +
Sbjct: 322 QRAGLALSDLTLIDMHEAFAAQTLANVQMFASDKFAQENLGRSKAMGEIDMSKF------ 375
Query: 66 NPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
N GG I+ GHP ATG + +L+ G + A A GLG A I+
Sbjct: 376 NVLGGSIAYGHPFAATGARMITQTLRELKRRGGGLGLNTACAA----GGLGAAMIL 427
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 36.3 bits (84), Expect = 0.014
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 18/65 (27%)
Query: 18 SDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISKGHP 77
SDI + EL++ F++ + LGL VN +GG I+ GHP
Sbjct: 307 SDIGLFELNEAFASQSIQVIRELGLDE------------------EKVNVNGGAIALGHP 348
Query: 78 LGATG 82
LG TG
Sbjct: 349 LGCTG 353
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 35.1 bits (81), Expect = 0.030
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 18/68 (26%)
Query: 15 IKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISK 74
++ S +D E+++ FS L + LGL P VN GG +S
Sbjct: 306 LEASQVDYYEINEAFSVVALANQKLLGLDP------------------EKVNVHGGAVSL 347
Query: 75 GHPLGATG 82
GHP+G +G
Sbjct: 348 GHPIGCSG 355
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 34.8 bits (80), Expect = 0.046
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFI-DSGANTYGGKH 63
AA ++ K + DID+ E+++ F+ A+ FI D + +
Sbjct: 320 AAKKVLAKAGLTKDDIDLWEINEAFAV---------------VAEKFIRDLDLD----RD 360
Query: 64 VVNPSGGLISKGHPLGATG 82
VN +GG I+ GHP+GATG
Sbjct: 361 KVNVNGGAIALGHPIGATG 379
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 34.3 bits (79), Expect = 0.057
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGK-H 63
A ++ EK +K DID++E+++ F++ L S A +
Sbjct: 290 ATAKVLEKAGMKIGDIDLVEINEAFASVVL-------------------SWAQVHEPDMD 330
Query: 64 VVNPSGGLISKGHPLGATG 82
VN +GG I+ GHP+G+TG
Sbjct: 331 KVNVNGGAIALGHPVGSTG 349
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 34.3 bits (79), Expect = 0.065
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A +R +K +K DID+ E+++ F++ L +A G P +
Sbjct: 293 ATERALKKAGMKIDDIDLYEVNEAFASVPLAWLKATGADP---ER--------------- 334
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKR 100
+N +GG I+ GHPLGA+G L L+ + GKR
Sbjct: 335 LNVNGGAIALGHPLGASGTKLMTTLVHALK-QRGKR 369
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 33.7 bits (77), Expect = 0.11
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 4 AAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKH 63
+A R +K +++D+IE ++ F+A L + LG D+
Sbjct: 295 SATRRCLDKAGWSLAELDLIEANEAFAAQSLAVGKELGW----------DAAK------- 337
Query: 64 VVNPSGGLISKGHPLGATG 82
VN +GG I+ GHP+GA+G
Sbjct: 338 -VNVNGGAIALGHPIGASG 355
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 33.0 bits (76), Expect = 0.14
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 28/116 (24%)
Query: 11 EKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDS--GANTYGGKHVVNPS 68
E+ + +D+ +I++H+ F+A L + ++ F G + G+ V+ S
Sbjct: 320 ERAGLTLADLTLIDMHEAFAAQTLANLQMFA------SERFAREKLGRSQAIGE--VDMS 371
Query: 69 -----GGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGAC 119
GG I+ GHP ATG + +LR G LGL AC
Sbjct: 372 KFNVLGGSIAYGHPFAATGARMITQTLHELRRRGG-------------GLGLTTAC 414
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 32.4 bits (74), Expect = 0.26
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A +L ++ +K DID+ EL++ F+ L + LG+ P+ +
Sbjct: 295 AVPKLLKQAGLKVDDIDLWELNEAFAVQVLYCRDTLGI-PMDR----------------- 336
Query: 65 VNPSGGLISKGHPLGATG 82
+N +GG I+ GHP G +G
Sbjct: 337 LNVNGGAIAVGHPYGVSG 354
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 31.5 bits (72), Expect = 0.53
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEAL---GLCPVGKAKDFIDSGANTYGG 61
AA L ++ + D+D+ E+++ F+A L A C + GA
Sbjct: 312 AATPLLQRHGLTLEDLDLWEINEAFAAQVLACLAAWADEEYC----REQLGLDGALGELD 367
Query: 62 KHVVNPSGGLISKGHPLGATG 82
+ +N GG I+ GHP+GA+G
Sbjct: 368 RERLNVDGGAIALGHPVGASG 388
>gnl|CDD|111382 pfam02477, Nairo_nucleo, Nucleocapsid N protein. The nucleoprotein
of the ssRNA negative-strand Nairovirus is an internal
part of the virus particle.
Length = 442
Score = 30.3 bits (68), Expect = 1.0
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 44 PVGKAKDFIDSGANTYGGKHVV--NPSGGLISK----GHPLGATGLAQCAEL 89
PV + + + GGK V NP G I+K G PL ATGLA+ AEL
Sbjct: 193 PVSR--EHVSWCREFAGGKFQVAFNPPWGDINKCGKSGIPLAATGLAKLAEL 242
>gnl|CDD|202730 pfam03704, BTAD, Bacterial transcriptional activator domain. Found
in the DNRI/REDD/AFSR family of regulators. This region
of AFSR along with the C terminal region is capable of
independently directing actinorhodin production. This
family contains TPR repeats.
Length = 146
Score = 29.2 bits (66), Expect = 1.4
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 83 LAQCAELCWQLRGEAGKRQVPNARLALQHNL--GLGGACIVALYRLG 127
L E +L G + L H L L + ALYR G
Sbjct: 65 LEARIEADLRL-GRHREALAELRALVALHPLRERLHRQLMRALYRSG 110
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 29.9 bits (68), Expect = 1.4
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 26/99 (26%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEA----------LGL-CPVGKAKDFID 53
A RL + + D D E+H+ F++ L T +A LGL P+G ID
Sbjct: 314 AVPRLLARNGLTLQDFDFYEIHEAFASQVLATLKAWEDEEYCRERLGLDAPLGS----ID 369
Query: 54 SGANTYGGKHVVNPSGGLISKGHPLGATG---LAQCAEL 89
+N +G ++ GHP ATG +A A+L
Sbjct: 370 RSK--------LNVNGSSLAAGHPFAATGGRIVATLAKL 400
>gnl|CDD|116972 pfam08392, FAE1_CUT1_RppA, FAE1/Type III polyketide synthase-like
protein. The members of this family are described as
3-ketoacyl-CoA synthases, type III polyketide synthases,
fatty acid elongases and fatty acid condensing enzymes,
and are found in both prokaryotic and eukaryotic (mainly
plant) species. The region featured in this family
contains the active site residues, as well as motifs
involved in substrate binding.
Length = 290
Score = 29.8 bits (68), Expect = 1.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 4 AAADRLYEKTQIKPSDIDVI 23
A D L+ KT ++P DI ++
Sbjct: 89 GAVDELFAKTGVRPRDIGIL 108
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase.
Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 29.3 bits (66), Expect = 2.6
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 31 ANELITYEALGLCPVGKAK--DFIDSGANTYGGKHVVNPSGGLISKGHP 77
AN + T L LC GKAK F+ S + ++ VN S L+ G
Sbjct: 1084 ANVIGTINVLNLCAEGKAKQFSFVSSTS-ALDTEYYVNLSDELVQAGGA 1131
>gnl|CDD|215459 PLN02854, PLN02854, 3-ketoacyl-CoA synthase.
Length = 521
Score = 29.2 bits (65), Expect = 2.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 5 AADRLYEKTQIKPSDIDVI 23
A D L+ KT +KP DI ++
Sbjct: 195 ALDSLFSKTGVKPRDIGIL 213
>gnl|CDD|200385 TIGR04134, lipo_with_rSAM, putative lipoprotein, rSAM/lipoprotein
system. Members of this family are Bacteroidetes
lineage putative lipoproteins that always occur in pairs
with a radical SAM enzyme, TIGR04133, from a branch of
the radical SAM superfamily in which many members
perform peptide or protein modifications. In some
members, the region distal to the Cys of the putative
lipoprotein cleavage motif is duplicated.
Length = 150
Score = 28.1 bits (63), Expect = 2.9
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 177 NLVEGFRGVYAFEVRNGPGGKSGRW-----IINTSTG---KGKITYNGTDKPEVTF 224
N V Y + G K+GR+ + + G Y G+DK E+
Sbjct: 91 NEVTFGFNKYRVIAEDIDGVKNGRYASDSVDVKMESDDFKGGSGWYEGSDKKEIDI 146
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 28.5 bits (63), Expect = 3.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKR 100
VN +GG I+ GHP+GA+G L LR K+
Sbjct: 337 VNINGGAIAIGHPIGASGGRVLITLIHGLRRAKAKK 372
>gnl|CDD|131058 TIGR02003, PTS-II-BC-unk1, PTS system, IIBC component. This model
represents a family of fused B and C components of PTS
enzyme II. This clade is a member of a larger family
which contains enzyme II's specific for a variety of
sugars including glucose (TIGR02002) and
N-acetylglucosamine (TIGR01998). None of the members of
this clade have been experimentally characterized. This
clade includes sequences from Streptococcus and
Enterococcus which also include a C-terminal A domain as
well as Bacillus and Clostridium which do not. In nearly
all cases, these species also contain an authentic
glucose-specific PTS transporter [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 548
Score = 28.8 bits (64), Expect = 4.1
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 229 VDIIDLISGK-----------------LDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAGP 271
IIDL+ G D K + K +GL K +Q GP
Sbjct: 474 TKIIDLLGGAENIADVDACMTRLRVTVKDLAKVAAEADWKKADALGLIQKDKGVQAVYGP 533
Query: 272 KIEVLRSKL 280
K +VL+S +
Sbjct: 534 KADVLKSDI 542
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 28.3 bits (64), Expect = 4.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 4 AAADRLYEKTQIKPSDIDVI 23
AA + E I DID+I
Sbjct: 56 EAAKKALEDAGIDADDIDLI 75
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 27.9 bits (63), Expect = 6.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 8 RLYEKTQIKPSDIDVIELH 26
R Y + + PSDID +E H
Sbjct: 287 RAYARAGVDPSDIDYVEAH 305
>gnl|CDD|185150 PRK15235, PRK15235, outer membrane fimbrial usher protein SefC;
Provisional.
Length = 814
Score = 28.2 bits (62), Expect = 6.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 57 NTYGGKHVVNPSGGLISKGHPLGATGLAQCAELCWQLRGE 96
N+ KH +N H LG TG+A ++L WQ RG+
Sbjct: 558 NSSSSKHDMN---------HDLGITGVAFDSQLTWQARGQ 588
>gnl|CDD|236204 PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated.
Length = 498
Score = 27.6 bits (62), Expect = 7.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 4 AAADRLYEKTQIKPSDIDVIELHDCF-SANELITYEALGL 42
AA R + DID +L+ CF SA ++ LGL
Sbjct: 296 AAGRRALALAGLGIDDIDAFDLYSCFPSAVQVAA-RELGL 334
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,247,918
Number of extensions: 1378241
Number of successful extensions: 1203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 71
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)