RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13266
(280 letters)
>1c44_A Protein (sterol carrier protein 2); non specific lipid transfer
protein, fatty acid binding, fatty acyl COA binding,
lipid binding protein; 1.80A {Oryctolagus cuniculus}
SCOP: d.106.1.1 PDB: 1qnd_A 2c0l_B
Length = 123
Score = 116 bits (292), Expect = 4e-33
Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 152 AEDPSIFKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGK 211
+ FK + +FK +E + ++ + V+ G++AF+V++GPGGK W+++ GKG
Sbjct: 1 SSAGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 60
Query: 212 ITYNGTDKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAGP 271
+ N K + T + D D++ L++GK++PQ AFFQ KLKI GNMGLAMKL LQ Q G
Sbjct: 61 VLPNSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPG- 119
Query: 272 KIEVLRSKL 280
++KL
Sbjct: 120 -----KAKL 123
>2qzt_A Sterol carrier protein 2-like 2; mosquito, fatty acid, palmitic
acid, cholesterol, lipid transport; HET: PLM; 1.70A
{Aedes aegypti} PDB: 3bdq_A*
Length = 111
Score = 102 bits (256), Expect = 7e-28
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 159 KCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGTD 218
+ + +++ + D N GV+ ++ G + WI++ K
Sbjct: 8 SVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQ--WIVDLKQLKV--DQGVFA 63
Query: 219 KPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKL 265
P+VT V D++ + L A Q K+++ G+ LA KL ++
Sbjct: 64 SPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEV 110
>1ikt_A Estradiol 17 beta-dehydrogenase 4; ALFA-beta fold, protein-triton
X-100 complex, hydrophobic tunnel; HET: OXN; 1.75A {Homo
sapiens} SCOP: d.106.1.1
Length = 120
Score = 103 bits (257), Expect = 7e-28
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
+ +F+ + + D +V+ V+ + + G G +W I+ +G GK+
Sbjct: 6 LQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKG-GNIGAKWTIDLKSGSGKVYQGPA 64
Query: 218 D-KPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQA 269
+ T I++D D ++++ GKLDPQKAFF +LK +GN+ L+ KL + K
Sbjct: 65 KGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQMILKDY 117
>1pz4_A Sterol carrier protein 2; alpha and beta, lipid binding protein;
HET: PLM; 1.35A {Aedes aegypti} SCOP: d.106.1.1 PDB:
2ksh_A 2ksi_A*
Length = 116
Score = 99.6 bits (248), Expect = 1e-26
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
K +F + + D VY F + G G W+++ K
Sbjct: 9 LKSDEVFAKIAKRLESIDP-ANRQVEHVYKFRITQG-GKVVKNWVMDLKNVKL---VESD 63
Query: 218 DKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQA 269
D E T + D + + +G L ++A Q+K+++ G + L L
Sbjct: 64 DAAEATLTMEDDIMFAIGTGALPAKEAMAQDKMEVDGQVELIFLLEPFIASL 115
>3cnu_A Predicted coding region AF_1534; structural GE MCSG, PSI-2, protein
structure initiative, midwest center F structural
genomics; 1.90A {Archaeoglobus fulgidus dsm 4304} PDB:
3bn8_A*
Length = 116
Score = 93.5 bits (232), Expect = 3e-24
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 159 KCHNMFKLLESAMNDDDDN--LVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNG 216
+ + K + N +++ + G+ GV +++ ++ S G +
Sbjct: 3 EAKELIKKMCDLQNSNEEIQKEMAGWSGVVQYKLDGEEF-----YVEYKSDGTCEFKEGV 57
Query: 217 TDKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAGPKIEV 275
P T + + ++ G+ DP F K +I+GN+ A +L + K+ K E+
Sbjct: 58 HSSPTFTVVAPPDFWLAVLKGQEDPVSGFMMGKYRIEGNIMEAQRLAGVIKKFQGKFEL 116
>3bkr_A Sterol carrier protein-2 like-3; mosquito, fatty acid, palmitic
acid, cholesterol, lipid binding protein; HET: PLM;
1.40A {Aedes aegypti} PDB: 3bks_A*
Length = 126
Score = 71.3 bits (174), Expect = 8e-16
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 10/119 (8%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
K + L + D + F + + G +++ + K
Sbjct: 9 LKTDQILDKLNEKLAQVDRS-KRSFTVILFVHL-RQEGKVVRSVVLDFNDLKISEIELAV 66
Query: 218 --------DKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQ 268
++ + + ++D D + + + Q K+ I GN + L + +
Sbjct: 67 TSTADYPAERIDASITIDDNDFYLVATKETSFAALIEQGKVDITGNKQAFLTLDEKFRN 125
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 50.9 bits (123), Expect = 1e-07
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 15/78 (19%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ +K + SDIDV E+++ F+A L + LGL K
Sbjct: 287 ASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEK--------------- 331
Query: 65 VNPSGGLISKGHPLGATG 82
+N +GG I+ GHPLG +G
Sbjct: 332 INLNGGAIALGHPLGCSG 349
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 51.0 bits (123), Expect = 2e-07
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + ++ + +DID IEL++ F+A L + L + K
Sbjct: 290 ATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEK--------------- 334
Query: 65 VNPSGGLISKGHPLGATG 82
VN GG I+ GHP G +G
Sbjct: 335 VNLHGGAIALGHPFGCSG 352
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 48.7 bits (117), Expect = 9e-07
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A ++ ++ + DID+ EL++ F++ L + L + K
Sbjct: 310 ATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPD---EK--------------- 351
Query: 65 VNPSGGLISKGHPLGATG 82
+N +GG I+ GHPLGATG
Sbjct: 352 LNVNGGAIAMGHPLGATG 369
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 47.9 bits (115), Expect = 1e-06
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + E+ + SD+ +IEL++ F+A L L + +
Sbjct: 301 ATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSL-SMEDQR--------------- 344
Query: 65 VNPSGGLISKGHPLGATG 82
+NP+GG I+ GHPLGA+G
Sbjct: 345 LNPNGGAIALGHPLGASG 362
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 46.4 bits (111), Expect = 4e-06
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 8 RLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNP 67
+ ++ DID+ E+++ F++ + LGL P K +N
Sbjct: 323 AAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDP---EK---------------INV 364
Query: 68 SGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLAL 109
+GG ++ GHPLGATG A L E KR+ + R +
Sbjct: 365 NGGAMAIGHPLGATG----ARCVATLLHE-MKRRGKDCRFGV 401
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 46.3 bits (111), Expect = 4e-06
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 4 AAADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKH 63
A ++ E T ++ DID+ E+++ F+A L LG+ K
Sbjct: 297 YAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDL---NK-------------- 339
Query: 64 VVNPSGGLISKGHPLGATG 82
VNP GG I+ GHPLG TG
Sbjct: 340 -VNPRGGAIALGHPLGCTG 357
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 46.0 bits (110), Expect = 6e-06
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 8 RLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNP 67
+K + SD+D+ E+++ F++ E L L P K VNP
Sbjct: 321 VALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPP---EK---------------VNP 362
Query: 68 SGGLISKGHPLGATG 82
GG ++ GHPLG TG
Sbjct: 363 LGGAVALGHPLGCTG 377
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 45.9 bits (110), Expect = 7e-06
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + +K + +DID+IE ++ F+A L L + +K
Sbjct: 299 ATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDS---SK--------------- 340
Query: 65 VNPSGGLISKGHPLGATG 82
+N +GG I+ GHP+GA+G
Sbjct: 341 LNVNGGAIALGHPIGASG 358
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 45.5 bits (109), Expect = 9e-06
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + EK D D++E+++ F+A L + L L K
Sbjct: 297 AIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDR---EK--------------- 338
Query: 65 VNPSGGLISKGHPLGATG 82
VN +G + GHP+G TG
Sbjct: 339 VNVNGSGVGLGHPIGCTG 356
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 45.1 bits (108), Expect = 1e-05
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + E + DID++E ++ F+A + L + K
Sbjct: 300 ATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDM---NK--------------- 341
Query: 65 VNPSGGLISKGHPLGATG 82
VN +GG I+ GHP+G +G
Sbjct: 342 VNVNGGAIAIGHPIGCSG 359
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 44.0 bits (105), Expect = 2e-05
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG P +
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP---SI--------------- 336
Query: 65 VNPSGGLISKGHPLGATG 82
VN +GG I+ GHP+GA+G
Sbjct: 337 VNVNGGAIAIGHPIGASG 354
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 43.6 bits (104), Expect = 4e-05
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + K D+D+ E+++ F+A + LGL P K
Sbjct: 300 AIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNP---EK--------------- 341
Query: 65 VNPSGGLISKGHPLGATG 82
VN GG I+ GHPLGA+G
Sbjct: 342 VNIEGGAIALGHPLGASG 359
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 42.9 bits (102), Expect = 5e-05
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 1 MTKA---AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGAN 57
A AA + + +K DI + E+++ FS L + L + P K
Sbjct: 293 FPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDP---QK-------- 341
Query: 58 TYGGKHVVNPSGGLISKGHPLGATG 82
VN +GG +S GHP+G +G
Sbjct: 342 -------VNINGGAVSLGHPIGMSG 359
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 39/227 (17%), Positives = 70/227 (30%), Gaps = 94/227 (41%)
Query: 68 SGGLISK-----GHPLG---ATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGAC 119
S GLI GH LG A LA A++ ++++
Sbjct: 1749 SKGLIPADATFAGHSLGEYAA--LASLADV-----------------MSIE--------- 1780
Query: 120 IVALYRLGFPTAHRPKAAQAQIANHPVAASN---IAEDPSIFKCHNMFKLLESAMNDDDD 176
+L + +R Q + + SN IA +P + +
Sbjct: 1781 --SLVEV---VFYRGMTMQVAVPRDELGRSNYGMIAINPG-----RVAASFS---QEALQ 1827
Query: 177 NLVEGFRGVYAFEVRNGPGGKSGR--WIINTSTGKGKITYNGTDKPEVTFIV-NDVDIID 233
+VE G ++G I+N YN ++ D+ +D
Sbjct: 1828 YVVERV------------GKRTGWLVEIVN---------YN---VENQQYVAAGDLRALD 1863
Query: 234 LISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAGPKIEVLRSKL 280
++ L N +K+Q + + +LQK +E + L
Sbjct: 1864 TVTNVL--------NFIKLQK-----IDIIELQKS--LSLEEVEGHL 1895
Score = 35.0 bits (80), Expect = 0.031
Identities = 50/246 (20%), Positives = 75/246 (30%), Gaps = 116/246 (47%)
Query: 75 GHP---LGATGLAQCAELCWQLRGEAGK--RQVPNAR---LALQHNLGLGGACIV----- 121
G P L + L Q Q++ K +P + ++L N G +V
Sbjct: 333 GVPSPMLSISNLTQE-----QVQDYVNKTNSHLPAGKQVEISL-VN---GAKNLVVSGPP 383
Query: 122 -ALYRLGFPTAHRPKAA----QAQIANH-----------PVAASNIAEDPSIFKCHNMFK 165
+LY L T + KA Q++I PVA+ P F H+
Sbjct: 384 QSLYGLNL-TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS------P--F--HS--H 430
Query: 166 LLESAMNDDDDNLVEG---FRG------VYAFE----VRN-------------------- 192
LL A + + +LV+ F VY +R
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 193 --------------GPGGKSGRWIINTSTGKGKITYNGTDKPEVTFIVNDVDIIDLISGK 238
GPGG SG + T + K +GT V +I ++G
Sbjct: 491 ETTTQFKATHILDFGPGGASG---LGVLTHRNK---DGT----------GVRVI--VAGT 532
Query: 239 LDPQKA 244
LD
Sbjct: 533 LDINPD 538
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural
genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB:
1wfr_A
Length = 130
Score = 35.6 bits (81), Expect = 0.004
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 170 AMNDDDDNLVE--GFRGVYAFEVRNGPG---GKSGRWIINTSTGKGKITYNGTDKPEVTF 224
+N+ + + G A VR P K +++ G + + E F
Sbjct: 15 KLNESEAYRKAASTWEGSLALAVRPDPKAGFPKGVAVVLDLWHGACRGAKAVEGEAEADF 74
Query: 225 IVND--VDIIDLISGKLDPQKAFFQNKLKI-QGNMGLAMKLTKL 265
++ +++ G+L+P A + L++ +G + +
Sbjct: 75 VIEADLATWQEVLEGRLEPLSALMRGLLELKKGTIAALAPYAQA 118
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.18
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 15 IKPSDIDVIELHDC-FSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLIS 73
+ D+ V H AN+ + + + + G + L
Sbjct: 1332 LTIDDLGVASFHGTSTKANDKNESATI--------NEMMKHLGRSEGNPVIGVFQKFLT- 1382
Query: 74 KGHPLGATG 82
GHP GA G
Sbjct: 1383 -GHPKGAAG 1390
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 30.6 bits (69), Expect = 0.60
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDC----FSANELITYEALGLCPVGKAKDFIDSGA 56
+ K AA + ++ + S I + + + LGL P K GA
Sbjct: 110 LGKEAAVKAIDEWGLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGA 169
Query: 57 NTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
G V+ + L + + G+ L C+E+
Sbjct: 170 --AAGGTVLRLAKDLA-ENNK-GSRVLIVCSEIT 199
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 30.3 bits (68), Expect = 0.63
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDCFSAN----ELITYEALGLCPVGKAKDFIDSGA 56
+ K AA ++ S I + + + + LGL P K GA
Sbjct: 118 LAKEAAISAIKQWGQPKSKITHLVFATTSGVDMPGADFQLAKLLGLRPTVKRVMLYQQGA 177
Query: 57 NTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
Y G V+ + L + + GA L C+E+
Sbjct: 178 --YAGATVLRVAKDLA-ENNK-GARVLVACSEVT 207
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 29.2 bits (65), Expect = 1.4
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDC----FSANELITYEALGLCPVGKAKDFIDSGA 56
+ K AA++ ++ S I + + + LGL P K G
Sbjct: 128 LAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGC 187
Query: 57 NTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
+ G V+ + L + + GA L C+E
Sbjct: 188 --FAGGTVLRMAKDLA-ENNR-GARVLVICSETT 217
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 29.1 bits (65), Expect = 1.5
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIEL----HDCFSANELITYEALGLCPVGKAKDFIDSGA 56
+ K AA++ ++ S+I + + LGL +
Sbjct: 105 LAKEAAEKAIKEWGRPKSEITHLVFCSISGIDMPGADYRLATLLGLPLTVNR--LMIYSQ 162
Query: 57 NTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
+ G ++ + L + + GA L E+
Sbjct: 163 ACHMGAAMLRIAKDLA-ENNR-GARVLVVACEIT 194
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 28.8 bits (64), Expect = 1.9
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDC----FSANELITYEALGLCPVGKAKDFIDSGA 56
+ AA + E+ S+I + + + + LGL GA
Sbjct: 118 LGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGA 177
Query: 57 NTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
Y G V+ + L + + GA L CAEL
Sbjct: 178 --YAGGTVMRYAKDLA-ENNR-GARVLVVCAELT 207
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 28.0 bits (62), Expect = 3.8
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 10/95 (10%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDCF-----SANELITYEALGLCPVGKAKDFIDSG 55
+ AA + + +D+D + + + + L L +
Sbjct: 140 YGERAARGALQIAGLDVADVDCLITSNSTTPALPGLDVALA-NRLPLRG--DTMLLPATQ 196
Query: 56 ANTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
G + + L+ P L +E
Sbjct: 197 WACVAGTRSLALAADLV-AADP-DRVVLVVISEAL 229
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus
faecalis} PDB: 3il5_A* 3il4_A*
Length = 321
Score = 27.9 bits (63), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVI 23
+ A +L EK+ + S+ID I
Sbjct: 55 LCHQVAKQLLEKSGKQASEIDFI 77
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 27.9 bits (62), Expect = 4.4
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIEL-----HDCFSANELITYEALGLCPVGKAKDFIDSG 55
+ K AA + ++ S I + + D A+ +T + LGL P K G
Sbjct: 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLT-KLLGLRPYVKRYMMYQQG 163
Query: 56 ANTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
A + G V+ + L + + GA L C+E+
Sbjct: 164 A--FAGGTVLRLAKDLA-ENNK-GARVLVVCSEVT 194
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 28.0 bits (62), Expect = 4.4
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 17/84 (20%)
Query: 15 IKPSDIDVIELHDCFS-ANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLIS 73
+ D+ V H + AN+ + I G N G+
Sbjct: 1512 LTIDDLGVASFHGTSTVANDKNESDV------------ICQQLKHLGRTKG-NAVLGIFQ 1558
Query: 74 K---GHPLGATGLAQCAELCWQLR 94
K GHP GA G L
Sbjct: 1559 KYLTGHPKGAAGAWMLNGCLQVLN 1582
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 27.5 bits (61), Expect = 5.1
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDCFSAN--------ELITYEALGLCPVGKAKDFI 52
+ AA + + +DI + + N + LGL P +
Sbjct: 99 LAAEAAKKAIAEWGRPAADITHL----VVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLH 154
Query: 53 DSGANTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
+G + G + + L + GA L AEL
Sbjct: 155 LNGC--FAGCAALRLAKDLA-ENSR-GARVLVVAAELT 188
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 27.0 bits (61), Expect = 6.0
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVI 23
M AA + + P ++D+I
Sbjct: 53 MATQAAKEALREANLSPEELDLI 75
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 27.0 bits (61), Expect = 6.5
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVI 23
+ A + L + +D +
Sbjct: 53 LAFKAVEDLLRRHPGALEGVDAV 75
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 27.3 bits (61), Expect = 6.6
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVI 23
M AA++ E+ I +
Sbjct: 120 MAVTAAEQAIERWGKPRERIGAV 142
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP:
c.8.2.3
Length = 141
Score = 26.5 bits (58), Expect = 6.6
Identities = 9/93 (9%), Positives = 23/93 (24%), Gaps = 17/93 (18%)
Query: 51 FIDSGANTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC----------WQLRGEAGKR 100
+ GG ++ G++ + + +A + + L
Sbjct: 20 VTKEYISFLGG---IDKETGIVKEDCEIKGESVAGRILVFPGGKGSTVGSYVLLNLRKNG 76
Query: 101 QVPNARLALQHNLGLGGACIVALYRLGFPTAHR 133
P A + + + +A P
Sbjct: 77 VAPKAIINKKTETIIAVGAAMA----EIPLVEV 105
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 27.0 bits (61), Expect = 6.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVI 23
+ A+ + I+P DID+I
Sbjct: 54 LAYEASVKAIADAGIQPEDIDMI 76
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A
{Clostridium thermocellum}
Length = 156
Score = 26.5 bits (58), Expect = 7.2
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 184 GVYAFEVR--NGPGGKSGRWIINTSTGKGKITYNGTDKPEVTF 224
G Y V+ N + N I+ NG + F
Sbjct: 60 GTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYF 102
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 27.1 bits (61), Expect = 7.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVI 23
M AA E QI P DI++I
Sbjct: 61 MGFEAAKNAIEAAQINPQDIELI 83
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 26.9 bits (59), Expect = 7.6
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIEL-----HDCFSANELITYEALGLCPVGKAKDFIDSG 55
+ K A+ ++ S+I I + + A + LGL P + +
Sbjct: 123 LAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGAELATA-KLLGLRP--NVRRVMMYQ 179
Query: 56 ANTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
+ G V+ + L + + GA LA C+E+
Sbjct: 180 QGAFAGATVLRVAKDLA-ENNA-GARVLAICSEVT 212
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 26.7 bits (60), Expect = 8.7
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVI 23
+ + A ++L + ID +
Sbjct: 69 LCRKAGEKLLAGLGWQADSIDAL 91
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 27.2 bits (60), Expect = 8.7
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 11/81 (13%)
Query: 15 IKPSDIDVIELHDC-FSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLIS 73
+ D+ V H AN+ + + + + G + L
Sbjct: 1531 LTIDDLGVASFHGTSTKANDKNESATI--------NEMMKHLGRSEGNPVIGVFQKFLT- 1581
Query: 74 KGHPLGATGLAQCAELCWQLR 94
GHP GA G L
Sbjct: 1582 -GHPKGAAGAWMMNGALQILN 1601
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 26.8 bits (59), Expect = 9.7
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 1 MTKAAADRLYEKTQIKPSDIDVIELHDC----FSANELITYEALGLCPVGKAKDFIDSGA 56
+ K AA + ++ S I + + + + L L P K F+
Sbjct: 101 LGKEAALKAIKEWGQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDP--SVKRFMFYHL 158
Query: 57 NTYGGKHVVNPSGGLISKGHPLGATGLAQCAELC 90
Y G V+ + + + + GA L C+E+
Sbjct: 159 GCYAGGTVLRLAKDIA-ENNK-GARVLIVCSEMT 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,347,069
Number of extensions: 268795
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 51
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)