RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13266
(280 letters)
>d1c44a_ d.106.1.1 (A:) Sterol carrier protein 2 (SCP2) {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 123
Score = 113 bits (283), Expect = 4e-32
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
FK + +FK +E + ++ + V+ G++AF+V++GPGGK W+++ GKG + N
Sbjct: 7 FKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSD 66
Query: 218 DKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQAGP 271
K + T + D D++ L++GK++PQ AFFQ KLKI GNMGLAMKL LQ Q G
Sbjct: 67 KKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGK 120
>d1ikta_ d.106.1.1 (A:) SCP2-like domain of MFE-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 115
Score = 93.5 bits (232), Expect = 1e-24
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
+ +F+ + + D +V+ V+ + + G G +W I+ +G GK+
Sbjct: 1 LQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKG-GNIGAKWTIDLKSGSGKVYQGPA 59
Query: 218 D-KPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKLQKQ 268
+ T I++D D ++++ GKLDPQKAFF +LK +GN+ L+ KL + K
Sbjct: 60 KGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQMILKD 111
>d1pz4a_ d.106.1.1 (A:) Sterol carrier protein 2 (SCP2) {Yellow
fever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 113
Score = 77.3 bits (190), Expect = 1e-18
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWIINTSTGKGKITYNGT 217
K +F + + D VY F + G G W+++ K
Sbjct: 6 LKSDEVFAKIAKRLESIDP-ANRQVEHVYKFRITQG-GKVVKNWVMDLKNVKL---VESD 60
Query: 218 DKPEVTFIVNDVDIIDLISGKLDPQKAFFQNKLKIQGNMGLAMKLTKL 265
D E T + D + + +G L ++A Q+K+++ G + L L
Sbjct: 61 DAAEATLTMEDDIMFAIGTGALPAKEAMAQDKMEVDGQVELIFLLEPF 108
>d1wfra_ d.106.1.1 (A:) Hypothetical protein TT1886 (TTHA0401)
{Thermus thermophilus [TaxId: 274]}
Length = 143
Score = 65.7 bits (160), Expect = 5e-14
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 181 GFRGVYAFEVRNGPGGKSG---RWIINTSTGKGKIT--YNGTDKPEVTFIVNDVDIIDLI 235
+ G A VR P +++ G + G + + + +++
Sbjct: 35 TWEGSLALAVRPDPKAGFPKGVAVVLDLWHGACRGAKAVEGEAEADFVIEADLATWQEVL 94
Query: 236 SGKLDPQKAFFQNKLKI-QGNMGLAMKLTKLQK 267
G+L+P A + L++ +G + + +
Sbjct: 95 EGRLEPLSALMRGLLELKKGTIAALAPYAQAAQ 127
>d2cfua1 d.106.1.3 (A:530-655) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 51.5 bits (123), Expect = 4e-09
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 186 YAFEVRNGPGGKSGRWIINTSTGKGKITYNGTD-KPEVTFIVNDVDIIDLISGKLDPQKA 244
+ +R G++ +++ T ++ D+ L+ ++ +
Sbjct: 32 LSINLRLPDIGEN--YLLELKNSHLNNLRGVQSEDAGQTVSIDRADLNRLLLKEVSAVRL 89
Query: 245 FFQNKLKIQGNMGLAMKLTKLQKQAGPKIEVL 276
F+ KLK GN L +L + +++
Sbjct: 90 VFEGKLKSSGNPLLLGQLFGMLGDFDFWFDIV 121
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 49.9 bits (119), Expect = 2e-08
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A+ + E+ K D+D++E ++ F+A + LG +
Sbjct: 27 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGW------------------DPSI 68
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
VN +GG I+ GHP+GA+G L ++++ ++ + L G+G A +
Sbjct: 69 VNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGL----ATLCIGGGMGVAMCI 121
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 48.1 bits (114), Expect = 6e-08
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 15 IKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHVVNPSGGLISK 74
+ SD+ +IEL++ F+A L L + +NP+GG I+
Sbjct: 36 LSFSDLGLIELNEAFAAQALAVLREWSLSMEDQ----------------RLNPNGGAIAL 79
Query: 75 GHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
GHPLGA+G L ++R + + + +G G A +V
Sbjct: 80 GHPLGASGARILTTLVHEMRRRKVQFGL----ATMCIGVGQGIAVVV 122
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 44.1 bits (104), Expect = 2e-06
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 24/117 (20%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A ++ E T ++ DID+ E+++ F+A L LG+ +
Sbjct: 29 AIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDL------------------NK 70
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPNARLALQHNLGLGGACIV 121
VNP GG I+ GHPLG TG Q A + +L+ + V +++ G+G A I
Sbjct: 71 VNPRGGAIALGHPLGCTGARQVATILRELKK--DQIGV----VSMCIGTGMGAAAIF 121
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 41.2 bits (96), Expect = 2e-05
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 5 AADRLYEKTQIKPSDIDVIELHDCFSANELITYEALGLCPVGKAKDFIDSGANTYGGKHV 64
A + ++ + +DID IEL++ F+A L + L + K
Sbjct: 28 ATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEK--------------- 72
Query: 65 VNPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQV 102
VN GG I+ GHP G +G L ++ G +
Sbjct: 73 VNLHGGAIALGHPFGCSGARISGTLLNVMKQNGGTFGL 110
>d1bvsa1 a.5.1.1 (A:148-203) DNA helicase RuvA subunit, C-terminal
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 56
Score = 25.3 bits (55), Expect = 1.8
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 122 ALYRLGFPTAHRPKAAQAQIANHPVAASNIAEDPS 156
AL LGF A QA+ A V + +D +
Sbjct: 10 ALVGLGFA------AKQAEEATDQVLDGELGKDGA 38
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 26.4 bits (58), Expect = 2.6
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 9 LYEKTQIKPSDIDVIELHDCFSANELI 35
K ++ ++ D +E++ F +++
Sbjct: 42 TIRKEDVRATEKDKVEIYKSFRPGDIV 68
>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
(RecC), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 304
Score = 26.1 bits (57), Expect = 5.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 228 DVDIIDLISGKLDPQKAFFQNKLKIQ 253
V + L P +AFFQ +L++
Sbjct: 14 TVPLETLQRFWAHPVRAFFQMRLQVN 39
>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 172
Score = 25.6 bits (56), Expect = 6.5
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 158 FKCHNMFKLLESAMNDDDDNLVEGFRGVYAFEVRNGPGGKSGRWI 202
++ + + + + E +G A+ GP + R+
Sbjct: 63 LNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLNTRYF 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,036,842
Number of extensions: 48104
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 14
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)