Query psy13267
Match_columns 101
No_of_seqs 20 out of 22
Neff 1.7
Searched_HMMs 29240
Date Sat Aug 17 00:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zd7_A VPS75, vacuolar protein 27.0 12 0.00041 28.0 -0.3 6 51-56 254-259 (264)
2 2lua_A Protein MALE-specific l 18.3 43 0.0015 20.9 1.0 17 58-74 30-46 (52)
3 2qgv_A Hydrogenase-1 operon pr 13.8 39 0.0013 23.0 0.0 9 66-74 46-54 (140)
4 2kcd_A Uncharacterized protein 10.5 42 0.0014 24.0 -0.7 22 71-95 25-48 (120)
5 2ayu_A Nucleosome assembly pro 10.2 63 0.0022 26.1 0.2 33 15-47 370-402 (417)
6 2elu_A Zinc finger protein 406 10.0 70 0.0024 18.8 0.3 4 68-71 12-15 (37)
7 1v90_A Delta-paluit1, delta-pa 9.0 1.1E+02 0.0036 18.1 0.8 10 61-70 26-35 (38)
8 1xu1_R Tumor necrosis factor r 8.9 73 0.0025 19.1 0.0 12 63-74 14-25 (42)
9 2kjx_A Jumping translocation b 8.7 53 0.0018 20.9 -0.7 8 68-75 21-28 (65)
10 1kqh_A ACTX-HI:OB4219; funnel 8.7 94 0.0032 18.3 0.5 10 61-70 26-35 (38)
No 1
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=26.99 E-value=12 Score=28.02 Aligned_cols=6 Identities=0% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHh
Q psy13267 51 EMVKEA 56 (101)
Q Consensus 51 EEkK~r 56 (101)
+++.+.
T Consensus 254 ~~~~~~ 259 (264)
T 2zd7_A 254 DEEPSS 259 (264)
T ss_dssp ------
T ss_pred ccCccc
Confidence 334333
No 2
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=18.26 E-value=43 Score=20.89 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.6
Q ss_pred hhhcCCcccccccCCCc
Q psy13267 58 VITKAPLDCMCRPCTSI 74 (101)
Q Consensus 58 vltkAPLeCMCRPCT~i 74 (101)
+..+|++.|.||-|...
T Consensus 30 ~~~~sC~~C~C~GCkNP 46 (52)
T 2lua_A 30 KSYNSCAGCHCVGCKNP 46 (52)
T ss_dssp HTTCCCSSCCCSSCCCS
T ss_pred cCCCccCCCEecCcCCC
Confidence 45689999999999753
No 3
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=13.78 E-value=39 Score=23.04 Aligned_cols=9 Identities=0% Similarity=-0.263 Sum_probs=0.0
Q ss_pred cccccCCCc
Q psy13267 66 CMCRPCTSI 74 (101)
Q Consensus 66 CMCRPCT~i 74 (101)
|.|.||..+
T Consensus 46 crCgpCk~i 54 (140)
T 2qgv_A 46 KRTPEVSDN 54 (140)
T ss_dssp TTCTTTTHH
T ss_pred ccCCcHHHH
No 4
>2kcd_A Uncharacterized protein SSP0047; alpha beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus subsp}
Probab=10.51 E-value=42 Score=23.98 Aligned_cols=22 Identities=45% Similarity=0.903 Sum_probs=0.0
Q ss_pred CCCccccc--chhHHHhhhcccCCccc
Q psy13267 71 CTSIEESA--VIPQEIVNYADEAPISG 95 (101)
Q Consensus 71 CT~iEes~--viPQEia~fadegpls~ 95 (101)
|-+|+|.| |||. .|++.|||++
T Consensus 25 ce~ieE~Ae~iLPe---~~i~~~pL~~ 48 (120)
T 2kcd_A 25 CESIEEVADDILPD---QYVRLGPLSN 48 (120)
T ss_dssp EEEEEEEHHHHSCT---TTSSSSTTTT
T ss_pred HhHHHHHHHhhCcH---hhhcCCcccc
No 5
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=10.15 E-value=63 Score=26.09 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=0.0
Q ss_pred CCccchhhhHhhhhHHHHHHHHHHHHHHHHHHH
Q psy13267 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47 (101)
Q Consensus 15 ~~~~g~eeeee~eeeeeeeeee~eeeeeEEEEE 47 (101)
.|.++++++++.+-+.++.++++++++++++..
T Consensus 370 ed~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~ 402 (417)
T 2ayu_A 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAEEQD 402 (417)
T ss_dssp C--------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc
No 6
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=10.00 E-value=70 Score=18.81 Aligned_cols=4 Identities=75% Similarity=1.987 Sum_probs=0.0
Q ss_pred cccC
Q psy13267 68 CRPC 71 (101)
Q Consensus 68 CRPC 71 (101)
||||
T Consensus 12 crfc 15 (37)
T 2elu_A 12 CRFC 15 (37)
T ss_dssp ETTT
T ss_pred HHHH
No 7
>1v90_A Delta-paluit1, delta-palutoxin IT1; insecticidal toxin, spider toxin, ICK fold, structure; NMR {Paracoelotes luctuosus} PDB: 1v91_A
Probab=8.98 E-value=1.1e+02 Score=18.11 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=0.0
Q ss_pred cCCccccccc
Q psy13267 61 KAPLDCMCRP 70 (101)
Q Consensus 61 kAPLeCMCRP 70 (101)
+.+--||||+
T Consensus 26 r~~p~C~CR~ 35 (38)
T 1v90_A 26 RSMPYCRCRN 35 (38)
T ss_dssp SSSSCCCCCB
T ss_pred CCCCcceecC
No 8
>1xu1_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 1.90A {Homo sapiens} SCOP: g.24.1.2 PDB: 1xut_A
Probab=8.85 E-value=73 Score=19.11 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=0.0
Q ss_pred CcccccccCCCc
Q psy13267 63 PLDCMCRPCTSI 74 (101)
Q Consensus 63 PLeCMCRPCT~i 74 (101)
||..+|.+|..|
T Consensus 14 ~Ll~~CisC~~~ 25 (42)
T 1xu1_R 14 HLLRDCISCASI 25 (42)
T ss_dssp TTTTEEEEGGGG
T ss_pred HHHHhhcchHhh
No 9
>2kjx_A Jumping translocation breakpoint protein; cysteine-rich domain, membrane, transmembrane, membrane PROT; NMR {Homo sapiens}
Probab=8.72 E-value=53 Score=20.87 Aligned_cols=8 Identities=38% Similarity=1.422 Sum_probs=0.0
Q ss_pred cccCCCcc
Q psy13267 68 CRPCTSIE 75 (101)
Q Consensus 68 CRPCT~iE 75 (101)
|+||+..+
T Consensus 21 C~pCs~Fe 28 (65)
T 2kjx_A 21 CSPCSNFR 28 (65)
T ss_dssp EEECCHHH
T ss_pred ccccchhh
No 10
>1kqh_A ACTX-HI:OB4219; funnel WEB, spider venom, CIS-trans isomerisation, disulfide rich, cystine knot, solution structure, spectroscopy, toxin; NMR {Hadronyche infensa} SCOP: g.3.6.2 PDB: 1kqi_A
Probab=8.65 E-value=94 Score=18.29 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=0.0
Q ss_pred cCCccccccc
Q psy13267 61 KAPLDCMCRP 70 (101)
Q Consensus 61 kAPLeCMCRP 70 (101)
+.+--||||+
T Consensus 26 ~~~p~C~Cr~ 35 (38)
T 1kqh_A 26 IFFYPCSCRP 35 (38)
T ss_dssp CSSSSEEEEC
T ss_pred CCCCceeecC
Done!