Query psy13267
Match_columns 101
No_of_seqs 20 out of 22
Neff 1.7
Searched_HMMs 13730
Date Sat Aug 17 00:24:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13267.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13267hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y0jb1 g.37.1.2 (B:1-36) U-sh 13.0 32 0.0023 18.8 0.9 11 63-73 6-16 (36)
2 d1ml4a2 c.78.1.1 (A:152-308) A 7.4 30 0.0022 20.8 -0.8 31 59-98 107-137 (157)
3 d1b0nb_ a.34.1.1 (B:) SinI ant 7.3 63 0.0046 16.9 0.7 14 75-88 15-28 (31)
4 d2zdra1 b.85.1.1 (A:282-349) C 6.9 44 0.0032 18.4 -0.1 18 55-73 20-37 (68)
5 d1fzva_ g.17.1.1 (A:) Placenta 6.8 42 0.003 20.4 -0.3 6 65-70 93-98 (100)
6 d1pzwa_ g.39.1.10 (A:) Transcr 6.7 70 0.0051 16.8 0.7 8 67-74 2-9 (80)
7 d1sisa_ g.3.7.2 (A:) Toxin I5a 6.6 50 0.0037 17.8 0.0 7 67-73 1-7 (35)
8 d1v6ga2 g.39.1.3 (A:42-81) Act 6.4 24 0.0017 19.7 -1.5 14 60-73 17-30 (40)
9 d1z6ma1 c.47.1.13 (A:1-172) Hy 6.4 19 0.0014 20.8 -2.0 25 67-93 35-59 (172)
10 d1ha6a_ d.9.1.1 (A:) Macrophag 5.8 79 0.0058 17.6 0.6 24 61-88 1-24 (70)
No 1
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.05 E-value=32 Score=18.79 Aligned_cols=11 Identities=45% Similarity=1.062 Sum_probs=8.1
Q ss_pred CcccccccCCC
Q psy13267 63 PLDCMCRPCTS 73 (101)
Q Consensus 63 PLeCMCRPCT~ 73 (101)
|.-=||.||.-
T Consensus 6 parf~c~pcgi 16 (36)
T d1y0jb1 6 PARFMCLPCGI 16 (36)
T ss_dssp CCCCBCTTTCC
T ss_pred ccceeccccce
Confidence 45569999963
No 2
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=7.44 E-value=30 Score=20.85 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=22.1
Q ss_pred hhcCCcccccccCCCcccccchhHHHhhhcccCCcccccc
Q psy13267 59 ITKAPLDCMCRPCTSIEESAVIPQEIVNYADEAPISGHFA 98 (101)
Q Consensus 59 ltkAPLeCMCRPCT~iEes~viPQEia~fadegpls~~F~ 98 (101)
.++--+.|.|.| .+ +||+.=++++|-|..|+
T Consensus 107 ~~~~~i~mHplP-Rg--------~EI~~~V~d~p~S~v~~ 137 (157)
T d1ml4a2 107 AKDELRIMHPLP-RV--------DEIHPEVDNTKHAIYFR 137 (157)
T ss_dssp SCTTCEEECCSC-CS--------SSBCGGGGGSTTBCHHH
T ss_pred cCCCeEEecCCC-cC--------ceecccccCCcccHHHH
Confidence 344567888999 33 36777788888888775
No 3
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=7.33 E-value=63 Score=16.95 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.1
Q ss_pred ccccchhHHHhhhc
Q psy13267 75 EESAVIPQEIVNYA 88 (101)
Q Consensus 75 Ees~viPQEia~fa 88 (101)
-+++|-|.+|..|.
T Consensus 15 keanispeeirkyl 28 (31)
T d1b0nb_ 15 KEANISPEEIRKYL 28 (31)
T ss_dssp HHTTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 46788899998874
No 4
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=6.88 E-value=44 Score=18.36 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=13.4
Q ss_pred HhhhhhcCCcccccccCCC
Q psy13267 55 EAEVITKAPLDCMCRPCTS 73 (101)
Q Consensus 55 ~rkvltkAPLeCMCRPCT~ 73 (101)
.+.+++..=|.++ |||++
T Consensus 20 kG~~i~~~dl~~~-RP~~g 37 (68)
T d2zdra1 20 KGELLSGDNLWVK-RPGNG 37 (68)
T ss_dssp TTCBCCTTTEEEE-SCSCS
T ss_pred CCCEecHHHeEEE-CCCCC
Confidence 3556777778877 99987
No 5
>d1fzva_ g.17.1.1 (A:) Placenta growth factor-1, PLGF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.77 E-value=42 Score=20.44 Aligned_cols=6 Identities=67% Similarity=1.830 Sum_probs=4.1
Q ss_pred cccccc
Q psy13267 65 DCMCRP 70 (101)
Q Consensus 65 eCMCRP 70 (101)
.|.|||
T Consensus 93 ~C~Crp 98 (100)
T d1fzva_ 93 RCECRP 98 (100)
T ss_dssp EEEEEE
T ss_pred cccccC
Confidence 577776
No 6
>d1pzwa_ g.39.1.10 (A:) Transcription factor grauzone Cg33133-Pa, zinc finger associated domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.66 E-value=70 Score=16.84 Aligned_cols=8 Identities=38% Similarity=0.912 Sum_probs=6.2
Q ss_pred ccccCCCc
Q psy13267 67 MCRPCTSI 74 (101)
Q Consensus 67 MCRPCT~i 74 (101)
+||-|...
T Consensus 2 iCRlCl~~ 9 (80)
T d1pzwa_ 2 ICRLCLRG 9 (80)
T ss_dssp BCTTTCCB
T ss_pred ccccCCCc
Confidence 69999753
No 7
>d1sisa_ g.3.7.2 (A:) Toxin I5a {Scorpion (Buthus eupeus) [TaxId: 34648]}
Probab=6.56 E-value=50 Score=17.84 Aligned_cols=7 Identities=57% Similarity=1.545 Sum_probs=4.7
Q ss_pred ccccCCC
Q psy13267 67 MCRPCTS 73 (101)
Q Consensus 67 MCRPCT~ 73 (101)
||-||-.
T Consensus 1 mc~pcft 7 (35)
T d1sisa_ 1 MCMPCFT 7 (35)
T ss_dssp CCEECCT
T ss_pred CCcCccc
Confidence 6777753
No 8
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.44 E-value=24 Score=19.74 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=10.2
Q ss_pred hcCCcccccccCCC
Q psy13267 60 TKAPLDCMCRPCTS 73 (101)
Q Consensus 60 tkAPLeCMCRPCT~ 73 (101)
|-.--+|||..|+.
T Consensus 17 TFnGKeC~CQ~Cs~ 30 (40)
T d1v6ga2 17 TFNGKECMCQKCSL 30 (40)
T ss_dssp EEETTEEEEHHHHS
T ss_pred EEcCceeehhhcCC
Confidence 33445899999975
No 9
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.35 E-value=19 Score=20.85 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=19.1
Q ss_pred ccccCCCcccccchhHHHhhhcccCCc
Q psy13267 67 MCRPCTSIEESAVIPQEIVNYADEAPI 93 (101)
Q Consensus 67 MCRPCT~iEes~viPQEia~fadegpl 93 (101)
.|.+|...+.. |++-+..|.+.+-+
T Consensus 35 ~Cp~C~~~~~~--~~~~~~~~~~~~~~ 59 (172)
T d1z6ma1 35 RCPYCRKWFEE--SEELLAQSVKSGKV 59 (172)
T ss_dssp TCHHHHHHHHH--HHHHHHHHHHTTSE
T ss_pred CCHhHHHHHHH--Hhhhhhhhccccce
Confidence 59999888653 67778888887754
No 10
>d1ha6a_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Mouse (Mus musculus), ccl20/mip-3a [TaxId: 10090]}
Probab=5.84 E-value=79 Score=17.63 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=15.0
Q ss_pred cCCcccccccCCCcccccchhHHHhhhc
Q psy13267 61 KAPLDCMCRPCTSIEESAVIPQEIVNYA 88 (101)
Q Consensus 61 kAPLeCMCRPCT~iEes~viPQEia~fa 88 (101)
+|.|+| | ...-...|=+.-|.+|-
T Consensus 1 as~l~C-C---~~~~~~~Ip~~~I~~y~ 24 (70)
T d1ha6a_ 1 ASNYDC-C---LSYIQTPLPSRAIVGFT 24 (70)
T ss_dssp CCCCCC-S---SSBCSSCCCGGGEEEEE
T ss_pred CCCCcC-c---ccccCCccCchheeEEE
Confidence 467888 5 45555555455677774
Done!