RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13267
(101 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 49.6 bits (118), Expect = 2e-08
Identities = 30/38 (78%), Positives = 30/38 (78%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
G SD EEEEE EEEEEEEEEEEEEEEEEEEE EE
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 49.6 bits (118), Expect = 2e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
G D G EEEE EEEEEEEEEEEEEEEEEEEEE E
Sbjct: 854 GGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 48.5 bits (115), Expect = 5e-08
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+G + EEE EEEEEEEEEEEEEEEEEEEEEE E
Sbjct: 859 DGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 47.7 bits (113), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
G S + EEEEE EEEEEEEEEEEEEEEEEEE EE + +
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSL 896
Score = 46.9 bits (111), Expect = 2e-07
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+K + D G + + EEEEEEEEEEEEEEEEEEEEEEE E +E
Sbjct: 845 AKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 46.1 bits (109), Expect = 4e-07
Identities = 27/40 (67%), Positives = 28/40 (70%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D E EEEEE EEEEEEEEEEEEEEEEE EE +E
Sbjct: 858 SDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
Score = 37.7 bits (87), Expect = 4e-04
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 17 DEGVEEEEEVEEEEE----EEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPL 64
E ++E+ V+ + EEEEEEEEEEEEEEEE E +E E + PL
Sbjct: 843 GEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPL 894
Score = 29.2 bits (65), Expect = 0.31
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
++ EG E+E E+E EE EE E+E E E E + E
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHE 754
Score = 28.0 bits (62), Expect = 0.73
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+++++G +++E + + + EEEEEEEEEE E +E E
Sbjct: 838 NAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEE 881
Score = 26.9 bits (59), Expect = 2.0
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
++ E VE E E E E E+E E E EE EE E+E E E
Sbjct: 710 TEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG 751
Score = 26.9 bits (59), Expect = 2.0
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
E E E E E+E E E EE EE E+E E E + EV T+
Sbjct: 718 EGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Score = 26.5 bits (58), Expect = 2.7
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+K + + E E E E E E E E+E E E EE EE E E EAE
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Score = 26.5 bits (58), Expect = 3.2
Identities = 18/50 (36%), Positives = 21/50 (42%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
SK ++ G EE E E E E EE E E+E E E E E
Sbjct: 631 SKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENE 680
Score = 25.7 bits (56), Expect = 4.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 4 DFHSSKSSGRSSDDEG---VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D ++ +G + +EG E E E EE E E+E E E + E E E E+ E +
Sbjct: 634 DVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERK 690
Score = 25.7 bits (56), Expect = 5.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
G + ++ G E E+E E E + E E E E E + E+E E EA+
Sbjct: 657 GENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAK 702
Score = 25.7 bits (56), Expect = 5.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
K S + E + E E E E E +E + + E E EE E E EAE
Sbjct: 676 KGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
Score = 25.3 bits (55), Expect = 6.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EG E +E + + E E EE E E E E E E E E
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETG 735
Score = 25.0 bits (54), Expect = 9.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ E E + + E E EE E E E E E E+E E+E +E E
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEE 740
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 44.3 bits (105), Expect = 2e-06
Identities = 23/37 (62%), Positives = 23/37 (62%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
E EEEEEEEEE EEEEEEEEE E E EV
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRA 336
Score = 43.9 bits (104), Expect = 2e-06
Identities = 21/34 (61%), Positives = 22/34 (64%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
EEEEEEEEE EEEEEEEEEEE +E
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 43.5 bits (103), Expect = 3e-06
Identities = 23/31 (74%), Positives = 23/31 (74%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
EEEE EEEE EEEEEEEEEEE EEEV
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEERTFEEEV 334
Score = 43.1 bits (102), Expect = 5e-06
Identities = 25/36 (69%), Positives = 25/36 (69%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
EEEEE EEE EEEEEEEEEEE EEE V EA
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEA 341
Score = 42.7 bits (101), Expect = 6e-06
Identities = 21/30 (70%), Positives = 21/30 (70%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E EEEEEEEEE EEEEEEEEEEE
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEEEEEER 328
Score = 41.6 bits (98), Expect = 1e-05
Identities = 21/31 (67%), Positives = 21/31 (67%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E EEEEEEEE EEEEEEEEEEE E
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFE 331
Score = 36.2 bits (84), Expect = 0.001
Identities = 20/28 (71%), Positives = 20/28 (71%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
E EEEEE EEEEEEEEEEE EEE
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 35.8 bits (83), Expect = 0.002
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEE 43
++E EEEE EEEEEEEEEEE EEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 39.0 bits (91), Expect = 6e-05
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
SSDDE E EEE +E E+E+ E + E +E+++ EV K + K
Sbjct: 93 SSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
Score = 33.6 bits (77), Expect = 0.007
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
R EEEE EE +E E+E+ E + E +E++ V +
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKP 132
Score = 33.2 bits (76), Expect = 0.010
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+EEEE EEE +E E+E+ E + E +E+ + K
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKE 137
Score = 32.4 bits (74), Expect = 0.018
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+ S D+E EEE +E E+E+ E + E +E+++ E + E E P
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143
Score = 29.7 bits (67), Expect = 0.15
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
SS +++E +E E+ + E + E +E+++ E + + E E K K
Sbjct: 93 SSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
Score = 29.7 bits (67), Expect = 0.15
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE-EEVEMVKEAEVITKAP 63
F SS ++E EEE E E+E+ E + E +E+++ E + + KE
Sbjct: 88 FRELSSS--DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKK 145
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 38.9 bits (91), Expect = 1e-04
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEESAV 79
V E++ EEEE+E+EEEEEEEEE EE E E + APL T S++
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPNDDPAWTFRLSSSL 401
Query: 80 IPQEIV 85
P+ V
Sbjct: 402 SPKYAV 407
Score = 31.6 bits (72), Expect = 0.046
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+ EEE+E EEEEEEEEE EE E EE
Sbjct: 346 QKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 31.6 bits (72), Expect = 0.049
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ E EE EEEEE E +EE+E EEEEEEE E+ KE E
Sbjct: 167 LREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 30.4 bits (69), Expect = 0.10
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
+ EE+E+ EEEEEEEE EE E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 29.6 bits (67), Expect = 0.24
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEE 44
DE E+E+E EEEEEEE EE E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 29.3 bits (66), Expect = 0.26
Identities = 22/35 (62%), Positives = 24/35 (68%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EG EEEEE E E +EE+E EEEEEEE EE E
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKE 202
Score = 29.3 bits (66), Expect = 0.28
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
EEEEE EEEEE E +E EE + E E E+
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELA 320
Score = 28.1 bits (63), Expect = 0.81
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
E E+ E EEEEEEEE E +EE+E EE E + EV
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 27.7 bits (62), Expect = 1.0
Identities = 21/40 (52%), Positives = 23/40 (57%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
VE E EEEEEEE E +EE+E EEEEEE E
Sbjct: 165 VELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 27.7 bits (62), Expect = 1.2
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ E EEEEEV E +EE+E EEEEEEE EE +E E
Sbjct: 169 EGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 27.3 bits (61), Expect = 1.4
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
EEEE EEEEEE E +E EE + E EV
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEV 316
Score = 26.2 bits (58), Expect = 3.0
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E EEEEEEEE E +EE+E E E +E E + K
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPK 201
Score = 25.8 bits (57), Expect = 4.4
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EE EEEEEEEE E +E EE + E +E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLE 315
Score = 25.4 bits (56), Expect = 6.9
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
EEEEEEEEEEE E +E EE + E ++ E+
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSL 323
Score = 25.0 bits (55), Expect = 7.7
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
V E E E EEEEEEEE E +EE E +E E
Sbjct: 162 VAEVELREGEEEEEEEEVGEADEEDEGEEEEE 193
Score = 25.0 bits (55), Expect = 9.1
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
++E EE E +EE+E EEEEEEE EE +EEE
Sbjct: 172 EEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGT 206
Score = 25.0 bits (55), Expect = 9.9
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
EEEEEEEEEEE E +E EE + EV
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVR 317
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 38.4 bits (90), Expect = 2e-04
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
DD+ EEEE+V+ +EEE+EE+E+ ++E++EEEE E ++ +
Sbjct: 337 DDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380
Score = 37.7 bits (88), Expect = 4e-04
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+DE ++++ EEEE+ + +EEE+EE+E+ ++E + +E E K
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380
Score = 34.6 bits (80), Expect = 0.004
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+++ ++ EE EE+ + +EEE+EE+E+ ++E++ E +E + K
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKK 382
Score = 31.5 bits (72), Expect = 0.043
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D+E E+ + E+EE+++++ EEEEE+ + +EE + E
Sbjct: 321 EDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363
Score = 31.5 bits (72), Expect = 0.045
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
D EEE+E +E+ ++E++EEEEEEE+E+
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 30.0 bits (68), Expect = 0.15
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
G EE+E EEE+ ++E+EE+++++ EEEEE
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEE 347
Score = 30.0 bits (68), Expect = 0.17
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
G +E EEEE+ ++E+EE+++++ EEEEE+ + E
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDE 354
Score = 30.0 bits (68), Expect = 0.19
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DD+ + E+EEEEE+ ++E+EE+++++ E E
Sbjct: 310 DDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEE 345
Score = 29.6 bits (67), Expect = 0.21
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
DD+ + EE+EEEEE+ ++E+EE+++++ E ++ +
Sbjct: 305 EFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVD 350
Score = 29.2 bits (66), Expect = 0.32
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEE 44
+ D EE+EE E+ ++E++EEEEEEE+E+
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 29.2 bits (66), Expect = 0.35
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+EEEE + ++E+EE+++++ EEEEE+ ++ +E E
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEE 359
Score = 28.8 bits (65), Expect = 0.48
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
SD+E EE+E+ ++E++EEEEEEE+E+++++ E
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 28.0 bits (63), Expect = 0.83
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+++ +E+ + E++EEEEEEE+E+++++ E E
Sbjct: 345 EEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 26.9 bits (60), Expect = 2.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ S S+DD E E + ++ + EE+EEEEE+ ++E
Sbjct: 290 EEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDE 333
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 38.6 bits (90), Expect = 2e-04
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEE-------EEEEEEEEEVEMVKE 55
S +D E ++E EE+EEEEEEE+E+E ++EE EE++VE E
Sbjct: 376 FSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYE 428
Score = 37.4 bits (87), Expect = 4e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ ++ E ++ EEE+EEEEEEE+E+E +E + E +E +V +K
Sbjct: 375 AFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKY 427
Score = 34.3 bits (79), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
F + + +++ + EEE+E EEEEE+E+E +E ++EE EE
Sbjct: 376 FSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEE 420
Score = 33.6 bits (77), Expect = 0.008
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D E E+ E ++EEEE+EEEEEEE+E+E
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEG 407
Score = 33.2 bits (76), Expect = 0.011
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
++ D+E +EEEE EE+E+E +E ++EE EE++
Sbjct: 378 ALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDD 422
Score = 31.3 bits (71), Expect = 0.052
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ E + E ++EEEE+EEEEEEE+E+ KE
Sbjct: 374 DAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKE 411
Score = 29.3 bits (66), Expect = 0.32
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + E E+ E ++EEEE+EEEEEE
Sbjct: 372 ILDAFSALEIEDANTERDDEEEEDEEEEEE 401
Score = 27.4 bits (61), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+DE EEEE+ +E +E ++EE EE++ E + +
Sbjct: 391 EEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG 432
Score = 26.6 bits (59), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ E E+ E ++EEEE+EEEE E
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEE 401
Score = 25.1 bits (55), Expect = 7.8
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E E E++EEE+ E++E + + +E+E V ++ E+
Sbjct: 67 EGEAELDEEEDGEDDELSVDSGQSKEDEWVFLIDES 102
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 38.2 bits (90), Expect = 2e-04
Identities = 22/35 (62%), Positives = 22/35 (62%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
GR EEEE E EEEEEEEEEEE EE E E
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 37.8 bits (89), Expect = 2e-04
Identities = 22/34 (64%), Positives = 23/34 (67%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EG + EEEEEE EEEEEEEEEEE EE E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAE 256
Score = 36.7 bits (86), Expect = 7e-04
Identities = 22/33 (66%), Positives = 22/33 (66%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.7 bits (86), Expect = 7e-04
Identities = 21/32 (65%), Positives = 22/32 (68%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+G E EEEEE EEEEEEEEEEE EE E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 33.6 bits (78), Expect = 0.008
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ + E EEEEEE EEEEEEEEEEE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.8 bits (76), Expect = 0.012
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+ E EEEEEE EEEEEEEEEEE E +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.4 bits (75), Expect = 0.021
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ E + E EEEEEE EEEEEEEEEE EAE
Sbjct: 221 ILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 31.3 bits (72), Expect = 0.049
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEE 43
GR ++ EEEE EEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 27.8 bits (63), Expect = 0.85
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ E + E EEEEEE EEEE E +E +A
Sbjct: 221 ILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 26.3 bits (59), Expect = 2.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEE 38
+ ++E EEEEE EEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 38.5 bits (89), Expect = 2e-04
Identities = 14/39 (35%), Positives = 30/39 (76%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+D + +++++E+E+E++++EE++EEEEEE E +K
Sbjct: 143 EDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 38.1 bits (88), Expect = 3e-04
Identities = 16/34 (47%), Positives = 28/34 (82%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
S D V ++++ +E+E++++EE++EEEEEEEEE
Sbjct: 146 SPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 37.7 bits (87), Expect = 3e-04
Identities = 16/41 (39%), Positives = 31/41 (75%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
H ++ D+ +++++E E+E++++EE++EEEEEEEEE
Sbjct: 139 HLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 36.2 bits (83), Expect = 0.001
Identities = 17/36 (47%), Positives = 29/36 (80%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DD+ +E+E+ ++EE++EEEEEEEEE + ++E+ E
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
Score = 35.4 bits (81), Expect = 0.003
Identities = 12/39 (30%), Positives = 27/39 (69%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
R +E + + ++++E+E+E++++EE++EEEE E
Sbjct: 138 RHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEE 176
Score = 35.0 bits (80), Expect = 0.003
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D + DDE +E+++ EE++EEEEEEEEE + ++E+EE E
Sbjct: 144 DMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191
Score = 30.4 bits (68), Expect = 0.12
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
EE+ + ++++E+E+E++++EE++ E +E E I
Sbjct: 142 EEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 28.1 bits (62), Expect = 0.86
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EE+ + ++++E+E+E++++EE+ E +E E
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEE 177
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 37.7 bits (88), Expect = 3e-04
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+K +S+ E EEE +VE E E + ++E+E EE+ +E E K
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDK 276
Score = 34.2 bits (79), Expect = 0.006
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
F + K S +E EE + E E + ++E+E EE+ +
Sbjct: 221 FFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSL 266
Score = 26.1 bits (58), Expect = 3.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
S+ +G ++E+E EE+ EE+E+ ++ E+
Sbjct: 247 SETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDL 280
Score = 26.1 bits (58), Expect = 3.7
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+E + ++ EE+ ++EE++E+ + EE+E +E
Sbjct: 651 KEFKILDYTEEKTKKEEKKEKNKREEKERIE 681
Score = 26.1 bits (58), Expect = 3.9
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+E+++E + + EE+ ++EE++E+ + EE E ++ AE
Sbjct: 647 IEKKKEFKILDYTEEKTKKEEKKEKNKREEKERIEIAE 684
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 37.2 bits (87), Expect = 5e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E + EEEEE E E EE E ++E +
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPELDLETISA 301
Score = 35.7 bits (83), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
+ E+ + EEEEE E E EE E+++
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPELDL 296
Score = 31.0 bits (71), Expect = 0.072
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 18 EGVEEEEEVEEEEEEEEEEEE 38
+ EEEEE E E EE E
Sbjct: 273 QRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 0.12
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 21 EEEEEVEEEEEE-EEEEEEEEEEEEEEEEEV 50
E + EEEEE E E EE E + E +
Sbjct: 269 EILAQRAEEEEESSEGAAETIEEPELDLETI 299
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 36.7 bits (85), Expect = 8e-04
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D+E ++ + +EE+E EE+E E EEEE+EE E
Sbjct: 37 DEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 35.1 bits (81), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+DE E++ E+EE+E EE+E E EEEE+E VK
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
Score = 33.6 bits (77), Expect = 0.008
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+ G ++ +EE E++ +E+EE+E EE+E E+ +E E
Sbjct: 20 TFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEV 73
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 36.4 bits (85), Expect = 8e-04
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
++E E++++ +++EEEEEEE+E++EEE+EE E E E
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 35.7 bits (83), Expect = 0.001
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ + + ++ EEEEEEE+E++EEE+EEEEEE E E +E E
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 34.9 bits (81), Expect = 0.003
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+ K E EEE+ E++++ +++EEEEEEE+E++ E +E E +
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 34.1 bits (79), Expect = 0.005
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
++ + ++EEEEEEE+E++EEE+EEEEEE E KE E K
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 34.1 bits (79), Expect = 0.006
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ ++ + EEEEE E+E++EEE+EEEEEE EEE+EEE E
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 33.7 bits (78), Expect = 0.007
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
S K++ + E++ EE++E++++ +++EEEEEEE E +E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 33.7 bits (78), Expect = 0.008
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
K+ +E EEE+E +EEE+EEEEEE EEE+EEEEE++
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 33.4 bits (77), Expect = 0.010
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
+E +E+++ +++EEEEEEE+E++EEE+E E + E +
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 33.4 bits (77), Expect = 0.011
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
VE+ E+ EEE++E++++ +++EEEEE E K+ E +
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 33.0 bits (76), Expect = 0.012
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ + + +++ EEEEEE+E++EEE+EEEEEE EE + +E +
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 32.6 bits (75), Expect = 0.017
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
++ +++EEEEEEE+E++EEE+EEEEE ++ E K
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Score = 30.3 bits (69), Expect = 0.12
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
E E++ E E++E++++ +++EEEEEEE+ + +E E +
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 29.1 bits (66), Expect = 0.32
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S +++ E+ ++ EEE++E++++ +++EEE E KE +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 28.3 bits (64), Expect = 0.67
Identities = 18/38 (47%), Positives = 31/38 (81%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
+ ++E +E++E E+EEEEEE EEE+EEEEE+++++
Sbjct: 440 KEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 27.2 bits (61), Expect = 1.4
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEE 43
F K +++ +EEE+ EEEEE EEE+EEEEE++
Sbjct: 435 FAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 36.4 bits (84), Expect = 8e-04
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 2 LPDFHSSKS--SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
+PD H + S R+S EE +++ ++ E+E+E E E +EE ++
Sbjct: 525 IPDKHLYRLCWSLRNST----EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 32.5 bits (74), Expect = 0.019
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMC------RPCTSIEESAVIPQ 82
EE + + ++ E+E+E E E + ++ + + C P + EE A +
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKM 601
Query: 83 EIVNYADEAPI 93
++ + E P+
Sbjct: 602 KMTD-TSEKPL 611
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 36.4 bits (85), Expect = 0.001
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ V + EEEEEEEEEEEEEE EEE
Sbjct: 289 KEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 34.1 bits (79), Expect = 0.006
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DE ++E + + EEEEEEEEEEEEEE E
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 31.8 bits (73), Expect = 0.034
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D E +E + + + EEEEEEEEEEEEEE
Sbjct: 282 DALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 29.8 bits (68), Expect = 0.16
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+D + ++EE + + + EEEEEEEEEEEE E
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEE 315
Score = 29.1 bits (66), Expect = 0.31
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 2 LPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEE 38
L + S ++ EEEEE EEEEEEE EEE
Sbjct: 284 LDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 36.1 bits (84), Expect = 0.001
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMC 68
D+E + ++++E++ + ++++EEE + E EV K LD +
Sbjct: 227 DEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEK--LDAIM 277
Score = 31.5 bits (72), Expect = 0.053
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
VE + E+++ ++EEEE +E++++E++ +M
Sbjct: 216 VEIQNELDDIDDEEEERVLADEDDDDEDDMFDM 248
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 35.7 bits (82), Expect = 0.002
Identities = 27/46 (58%), Positives = 31/46 (67%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
P S +S S +E EEEEE EEEE+E EEEE E+EEEEEE E
Sbjct: 432 PSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 34.9 bits (80), Expect = 0.003
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+S+ S E EEEEE EEEEE+E EEEE E+EEEEEE E + E E+
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 34.9 bits (80), Expect = 0.003
Identities = 29/51 (56%), Positives = 34/51 (66%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S S ++ EEEEE EEEEEEE+E EEEE E+EEEEEEVE +E
Sbjct: 433 SMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483
Score = 33.3 bits (76), Expect = 0.011
Identities = 29/51 (56%), Positives = 33/51 (64%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S+ S + EEEE VEEEEEEEEEEEEEE+E EEEE E E +E
Sbjct: 426 STSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 31.0 bits (70), Expect = 0.079
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+ S ++E EEEEE +E EEEE E+EEEEEE E + E ++ +
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGS 489
Score = 31.0 bits (70), Expect = 0.081
Identities = 30/57 (52%), Positives = 35/57 (61%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+S +SG S E EEE EEEEEEEEEEEEEE+E EEEE E +E E +
Sbjct: 424 ASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADN 480
Score = 27.2 bits (60), Expect = 1.8
Identities = 26/51 (50%), Positives = 29/51 (56%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
SS+SS S E + +E EEEE EEEEEEEEEEEE E E E
Sbjct: 415 SSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEE 465
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
EE E EE +++E+EEEEE+E + A
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAA 211
Score = 33.6 bits (78), Expect = 0.009
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
V+ E + E EE +++E+EEEEE+ A ++ P
Sbjct: 174 VDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELP 217
Score = 32.5 bits (75), Expect = 0.019
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D E+ V E EE +++E+EEEEE+E ++
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208
Score = 32.5 bits (75), Expect = 0.024
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
EE+ E EE +++E+EEEEE+E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDE 204
Score = 32.1 bits (74), Expect = 0.028
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D EE+ E EE +++E+EEEEE+E ++ E+E
Sbjct: 174 VDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 31.3 bits (72), Expect = 0.060
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
+ EE+ E EE +++E+EEEEE+E + +
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSL 209
Score = 29.4 bits (67), Expect = 0.24
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
G E EE ++E+EEEEE+E ++ +E E E V E
Sbjct: 183 AHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLE 222
Score = 29.4 bits (67), Expect = 0.30
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EE+ E EE +++E+EEE E +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208
Score = 29.0 bits (66), Expect = 0.36
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+ +D E E +++E+EEEEE+E ++ +E E+ ++
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKV 220
Score = 28.2 bits (64), Expect = 0.57
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+++++ E+EE +++E+EEEEE+E ++ + + E
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPE 218
Score = 27.8 bits (63), Expect = 0.77
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
VEE + ++ E E + + +E+ EEE
Sbjct: 60 VEEAPDADDLLLAENEADAQTDEDAEEEAAA 90
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E ++ + EE+ E EE +++E+EE
Sbjct: 167 RELIDGFVDPNAEEDPAHVGSELEELDDDEDEE 199
Score = 26.3 bits (59), Expect = 3.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
+ + EE + +E+EEEEE+E ++ +E E
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 25.5 bits (57), Expect = 5.5
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
EE+ E EE +++E+E E E + A
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADES 214
Score = 25.5 bits (57), Expect = 6.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
V EE ++ E E + + +E+ EEE
Sbjct: 59 VVEEAPDADDLLLAENEADAQTDEDAEEEA 88
Score = 25.5 bits (57), Expect = 6.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
++ E E +++ +EEEEE+E ++ +E E E+V
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKV 220
Score = 25.1 bits (56), Expect = 7.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ +++E EEEEE+E ++ +E E E+ +E K
Sbjct: 186 GSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKA 226
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 35.1 bits (81), Expect = 0.002
Identities = 16/37 (43%), Positives = 31/37 (83%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + E V+EE+E +EEEEEEEEEE+E+ ++++++++
Sbjct: 161 KELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 33.2 bits (76), Expect = 0.011
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ + E + +EE E++EEEEEEEEEE+E+ ++++++ +
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 32.0 bits (73), Expect = 0.028
Identities = 15/35 (42%), Positives = 27/35 (77%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
E E+ + E+E++EEEEEEEEEE+E+ ++++ +
Sbjct: 162 ELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 30.5 bits (69), Expect = 0.085
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E++ E E E+ +EE+E++EEEEEEEEE +
Sbjct: 156 LEKKLKELEAEDVDEEDEKDEEEEEEEEEED 186
Score = 30.5 bits (69), Expect = 0.10
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ S E +E E E+ +EE+E++EEEEEEEEEE+E+ +
Sbjct: 143 TEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFD 190
Score = 30.1 bits (68), Expect = 0.12
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E++ + E E+ +EE+E++EEEEEEEEEE E + +
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 29.7 bits (67), Expect = 0.19
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ D + E + +E E E+ +EE+E++EEEEEE E E
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDE 187
Score = 29.3 bits (66), Expect = 0.28
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
K DE E++EE EEEEEEE+E+ ++++++++
Sbjct: 161 KELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 29.0 bits (65), Expect = 0.28
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+ D + +E++E EEEEEEEE+E+ ++++++++
Sbjct: 160 LKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 34.8 bits (80), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
H G D++ +EE ++ E+E E E+ E E E + E+ EE E +AE
Sbjct: 641 HQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Score = 32.2 bits (73), Expect = 0.028
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
+ DDE E E E E E + E+ EE+E+E++ E E V
Sbjct: 656 EETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGV 697
Score = 31.4 bits (71), Expect = 0.056
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+DD+ E+E E E+ E E E + E+ EE+E+E++ E + I KA
Sbjct: 658 TDDD--EDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Score = 30.2 bits (68), Expect = 0.16
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S EG EE+E+ EE +++E+E E E+ E E E
Sbjct: 637 NKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESES 677
Score = 29.1 bits (65), Expect = 0.33
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
D+ E+ E E E + E+ EE+E+E++ E E V + +A
Sbjct: 661 DEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Score = 28.7 bits (64), Expect = 0.44
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S+ +E E++ E +++E+E E E+ E E E + E E E
Sbjct: 639 SRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQE 688
Score = 27.5 bits (61), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ E +E+ E E + E+ EE+E+E++ E E V + K
Sbjct: 664 ECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVR 705
Score = 26.0 bits (57), Expect = 4.2
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DE +++ E EEE+E++ EE +++E+E E +E
Sbjct: 635 DENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIE 669
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 34.4 bits (79), Expect = 0.004
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
D+E EE+EE +EEEE+ ++EEE +EEEE+EE
Sbjct: 36 PDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 32.0 bits (73), Expect = 0.028
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
E E+EV +EEEEEE+EE++EEEE+ ++E E+ +E E K
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKK 72
Score = 32.0 bits (73), Expect = 0.034
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
VE+E E E +EEEEEE+EE++EEEE+ + E + E
Sbjct: 27 VEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEE 64
Score = 32.0 bits (73), Expect = 0.034
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
VE+E EEEEEE+EE++EEEE+ ++EEEV+ +E E K
Sbjct: 31 VEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKK 72
Score = 30.5 bits (69), Expect = 0.11
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + E +EEEE E+EE++EEEE+ ++EEE +EEE
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEE 65
Score = 29.7 bits (67), Expect = 0.21
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
E+EVE+E +EEEEEE+EE++EEEE+ + +E +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDE 63
Score = 29.0 bits (65), Expect = 0.40
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
++E+EEVEEE+EE E E E EE+ E+ ++E V
Sbjct: 494 SIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEV 528
Score = 27.0 bits (60), Expect = 1.6
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E E E+E +EEEEEE+EE++EEEE KE EV +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEE 64
Score = 26.3 bits (58), Expect = 3.0
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ K + +++ ++EEEV+EEEE+EE++++ ++ +E E + K + T+
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRN 97
Query: 63 PLD 65
P D
Sbjct: 98 PKD 100
Score = 25.9 bits (57), Expect = 4.7
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EE EE +EE E E E EE+ E+ + EEV+
Sbjct: 499 EEVEEEDEEAEVETTEPAEEDAEDSKMEEVD 529
Score = 25.5 bits (56), Expect = 5.8
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
E+EE EEE+EE E E E EE+ E K EV
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDSKMEEV 528
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 34.6 bits (80), Expect = 0.005
Identities = 11/54 (20%), Positives = 33/54 (61%)
Query: 2 LPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
L D + R +++ ++EE EE+EE + E++E+++++++++++ +
Sbjct: 110 LQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163
Score = 33.4 bits (77), Expect = 0.010
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+E +++E ++ + EE+++++EE +EE+EE
Sbjct: 105 DIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESS 141
Score = 31.9 bits (73), Expect = 0.034
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 16 DDEGVEEE--EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
DD +EEE +E ++ + EE+++++EE +EE+ E K
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKS 143
Score = 31.5 bits (72), Expect = 0.052
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
D+ + EE ++++EE +EE+EE + E++E++ + + ++ T
Sbjct: 116 YDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160
Score = 31.1 bits (71), Expect = 0.057
Identities = 11/38 (28%), Positives = 26/38 (68%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
EE+++ +EE +EE+EE + E++E+++++ + A
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161
Score = 30.3 bits (69), Expect = 0.12
Identities = 8/37 (21%), Positives = 27/37 (72%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+++++ E +EE+EE + E++E+++++++ + + E
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRE 162
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 33.8 bits (78), Expect = 0.008
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E E++++ E+EEE+++ E+ E+V EA
Sbjct: 264 PPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEA 304
Score = 32.3 bits (74), Expect = 0.028
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ EE E++++ E+EEE+++ E E++ +A
Sbjct: 263 QPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEA 304
Score = 31.1 bits (71), Expect = 0.060
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ EEE E++++ E+EEE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEE 288
Score = 30.0 bits (68), Expect = 0.18
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E +++ E+EEE+++ E+ EE +E V+ A
Sbjct: 273 PPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAA 308
Score = 28.1 bits (63), Expect = 0.81
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EEE E++++ E+E E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEE 288
Score = 26.9 bits (60), Expect = 1.7
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
+ EEE E++++ + ++ + +A +
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 25.8 bits (57), Expect = 4.8
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EEE E+++ E E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEE 288
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 33.6 bits (77), Expect = 0.009
Identities = 21/43 (48%), Positives = 23/43 (53%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
V E EEEEEEEEEEEE E E EE V + E+ A
Sbjct: 397 VVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPA 439
Score = 32.1 bits (73), Expect = 0.027
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
E+ V E EEEEEEEEEEEEE E E M +
Sbjct: 392 EKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGF 430
Score = 30.9 bits (70), Expect = 0.079
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
E EEEE EEEEEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 30.2 bits (68), Expect = 0.14
Identities = 18/34 (52%), Positives = 18/34 (52%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
EEEEE EEEEEE E E EE E EM
Sbjct: 402 AEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEM 435
Score = 25.5 bits (56), Expect = 5.8
Identities = 20/41 (48%), Positives = 21/41 (51%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
DE E +E E EEEEEEEEEEEEE E E
Sbjct: 384 DELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPME 424
Score = 25.5 bits (56), Expect = 6.3
Identities = 17/35 (48%), Positives = 18/35 (51%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
E EEEEE EEEE E E EE E E+ M
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPM 437
Score = 25.2 bits (55), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEE 41
R +++E EEEEE EE E E EE
Sbjct: 400 RWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 33.8 bits (77), Expect = 0.009
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
SDDE E EEEV E E ++E +E +E+EE +E E + E E
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDE 969
Score = 30.4 bits (68), Expect = 0.13
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
SSDDE E +E+ E +E E+ E+E E + +EE+ E E E
Sbjct: 944 SSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELE 987
Score = 30.0 bits (67), Expect = 0.19
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D+E E E++ E+E E + +EE+ E+ +E E
Sbjct: 955 DEESDESSEDLSEDESENDSSDEEDGEDWDELESKA 990
Score = 28.8 bits (64), Expect = 0.42
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S S + +DE +E E E+E E + +EE+ E+ +E E + ++
Sbjct: 945 SDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 27.7 bits (61), Expect = 1.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
SS SD+ +EE + E+ E+E E + +EE+ E+ E+ +A
Sbjct: 944 SSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKA 990
Score = 27.7 bits (61), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ ++S DE E+EE E E+ E+E E + +EE+ E+ +
Sbjct: 936 EEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWD 984
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.8 bits (75), Expect = 0.015
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
D SS D E E E+ ++E EE+E EEEE+ E E +E E++T P
Sbjct: 127 DSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEILTGNP 186
Query: 64 L 64
L
Sbjct: 187 L 187
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 32.8 bits (75), Expect = 0.016
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D +E+E EEEE+ +E EEEE E+ EEE
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGS 398
Score = 32.8 bits (75), Expect = 0.017
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
R+ D EE + +E+EEEE+ +E EEEE E+ EE
Sbjct: 359 RARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEG 397
Score = 32.4 bits (74), Expect = 0.026
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D E V+E+E+ EEE+ +E EEEE E+ EEE +
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 32.0 bits (73), Expect = 0.032
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D++ EEEE+ +E EEEE E+ EEE + E+
Sbjct: 371 DEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDG 404
Score = 31.6 bits (72), Expect = 0.038
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E+E+E EE+ +E EEEE E+ EEE + E
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408
Score = 31.2 bits (71), Expect = 0.064
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EEV+E+E+EEEE+ +E EEEE E+ E ++
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSR 401
Score = 30.9 bits (70), Expect = 0.083
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E +E+ +EEEE+ +E EEEE E+ EEE +
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 30.5 bits (69), Expect = 0.099
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ + E+EEE + +E EEEE E+ EEE + E + +
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410
Score = 30.5 bits (69), Expect = 0.12
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DE +EEEE +E EEEE E+ EEE + E+
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGS 405
Score = 29.3 bits (66), Expect = 0.24
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
++E +E E EE E+ EEE + E+ E K
Sbjct: 377 EEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKES 424
Score = 29.3 bits (66), Expect = 0.31
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+DE E+ + EEEE E+ EEE + E+ E ++ +KA
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKA 420
Score = 28.9 bits (65), Expect = 0.42
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ + E +E+E+EEEE+ +E EEEE E + ++
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 27.8 bits (62), Expect = 1.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ S+ S + + + EE +E+E+EEEE+ +E EE E
Sbjct: 344 LRNPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEE 389
Score = 25.5 bits (56), Expect = 5.4
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
RS + E E E+ EE + E+ E + + E + KE
Sbjct: 380 QRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKE 423
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 32.7 bits (75), Expect = 0.016
Identities = 8/36 (22%), Positives = 30/36 (83%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DD+ ++++++ E+++E++++++ ++E+EE++E +
Sbjct: 143 DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKEL 178
Score = 31.5 bits (72), Expect = 0.052
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
DDE +E+++ ++ ++E+EE++E +E E+ +++ + E +
Sbjct: 152 DDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQ 199
Score = 30.7 bits (70), Expect = 0.085
Identities = 10/34 (29%), Positives = 26/34 (76%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
DD+ E+++E +++++ ++E+EE++E +E E+
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182
Score = 30.7 bits (70), Expect = 0.087
Identities = 9/36 (25%), Positives = 28/36 (77%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D+ ++E++ E++++++ ++E+EE++E +E E++
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182
Score = 30.3 bits (69), Expect = 0.11
Identities = 10/42 (23%), Positives = 28/42 (66%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
DD+ +++E+ ++++ ++E+EE++E +E E+ + + E
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
Score = 30.3 bits (69), Expect = 0.11
Identities = 10/51 (19%), Positives = 36/51 (70%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
DD+ +++++ +++++E+++E++++++ ++E+EE + KE E ++
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDF 187
Score = 29.2 bits (66), Expect = 0.27
Identities = 9/42 (21%), Positives = 28/42 (66%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
DD+ +E+++ ++++++ ++E+EE++E +E E+ +
Sbjct: 148 DDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189
Score = 28.8 bits (65), Expect = 0.39
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
DD+ ++E+ E++E +E E+ ++++ +E++ E +++A K
Sbjct: 160 DDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKL 206
Score = 28.4 bits (64), Expect = 0.63
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
DD+ + ++E EE++E +E E+ ++++ +E+
Sbjct: 157 DEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 27.7 bits (62), Expect = 0.92
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
DD+ V++E+E ++E +E E+ ++++ +E++
Sbjct: 160 DDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDD 193
Score = 27.7 bits (62), Expect = 0.96
Identities = 11/50 (22%), Positives = 33/50 (66%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
+D+ +++++ ++E+EE++E +E E+ ++++ V ++E + +A D
Sbjct: 154 EDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKD 203
Score = 27.7 bits (62), Expect = 1.1
Identities = 7/37 (18%), Positives = 24/37 (64%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+D+ ++ ++ +EE++E +E E+ ++++ +E +
Sbjct: 157 DEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDD 193
Score = 25.0 bits (55), Expect = 8.6
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+ DDE E++E E E+ ++++ +E++ E
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 32.3 bits (74), Expect = 0.017
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
EE+E ++EE+EEEE++EE+++E+E EEE VK+
Sbjct: 108 ASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKV 145
Score = 30.8 bits (70), Expect = 0.071
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
SG+ +E ++ EE+EEEE++EE+++E+E EEEE
Sbjct: 102 SGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.0 bits (68), Expect = 0.12
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
V EE+ +++EE+EEEE++EE+++E+E E E +V
Sbjct: 107 VASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKV 145
Score = 29.6 bits (67), Expect = 0.18
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
E E +++ E+EEEE++EE+++E+E EEEE V+ VK
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 27.3 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
EE+E +++EE+EEEE++EE+++E E +E + K
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 26.1 bits (58), Expect = 2.8
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEE 40
H S SDD+ +EEEE +EE+++E+E EEEE
Sbjct: 105 HLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 25.7 bits (57), Expect = 3.2
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
EE+E +++EE+EEEE++EE+++ + +E E K
Sbjct: 108 ASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKV 145
Score = 25.7 bits (57), Expect = 3.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+ V EE+E +++EE+EEEE++EE++ E E E
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 32.7 bits (75), Expect = 0.017
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+++ E E+ EEEEEE++ E E+E+EE+E+EE E +
Sbjct: 276 EEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEG 317
Score = 32.7 bits (75), Expect = 0.018
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
E EEEEE ++ E E+E+EE+E+EEEEE+++
Sbjct: 284 EKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 31.9 bits (73), Expect = 0.033
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D+E +EE E EEEEEE++ E E+E+EE+E+E E + E
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDE 316
Score = 30.8 bits (70), Expect = 0.088
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
DE EE + EEEEEE++ E E+E+EE+E+ E ++ +
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDD 315
Score = 29.6 bits (67), Expect = 0.18
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
++E ++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 287 EEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 29.6 bits (67), Expect = 0.19
Identities = 14/29 (48%), Positives = 25/29 (86%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
EE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 291 EEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 28.5 bits (64), Expect = 0.48
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
++E E++ E+E+EE+E+EEEEE+++E ++
Sbjct: 287 EEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 27.7 bits (62), Expect = 0.95
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
++E + E +E+EE+E+EEEEE+++E ++
Sbjct: 287 EEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 27.3 bits (61), Expect = 1.3
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
++E E E E+EE+E+EEEEE+++E ++
Sbjct: 287 EEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 25.0 bits (55), Expect = 9.0
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
V +EE EE E+ EEEEEE++ E E+E E
Sbjct: 272 VGGDEEDLEELLEKAEEEEEEDDYSESEDEDE 303
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 32.2 bits (74), Expect = 0.023
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
+EEE E + +EE EEEEE + + + +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLE 348
Score = 31.5 bits (72), Expect = 0.048
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ EEE E + +EE EEEEE +++ ++
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDL 347
Score = 29.9 bits (68), Expect = 0.17
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 26.1 bits (58), Expect = 3.7
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPL 64
++EEE E + +EE E E +++ L
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDL 347
Score = 25.7 bits (57), Expect = 4.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
RS +E E +EE EEEEE + ++ E+E
Sbjct: 310 RRRSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELE 350
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 32.5 bits (74), Expect = 0.023
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE--AEVITKAPL 64
+ DE EE + EE +EE EEEE+ E E+ +E K+ EVI P+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVIAGRPV 336
Score = 32.5 bits (74), Expect = 0.025
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E++EE +EE+ EE + EE +EE EEEE+
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 31.0 bits (70), Expect = 0.073
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
++E +E +EE++EE+ EE + EE +EE EE E
Sbjct: 276 LKELKEKKEEKDEEKSEEVKTEEVDEEFEEEE 307
Score = 30.2 bits (68), Expect = 0.14
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+E E++EE++EE+ EE + EE +EE E K
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 29.0 bits (65), Expect = 0.32
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
EG + +E++E++EE++EE+ EE + EE +EE E ++
Sbjct: 271 EGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 32.5 bits (75), Expect = 0.025
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 15/58 (25%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM---------------VKEAEVITKA 62
++ EEE+ +E+ E +E EE+E++ E V EAE + K+
Sbjct: 510 IDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRVAEVLEAEKVEKS 567
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 32.3 bits (74), Expect = 0.026
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
++ EE +EEE++EE++ ++ EE ++ EE + EV+ +
Sbjct: 64 KIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKAR-DEVLEQL 106
Score = 30.8 bits (70), Expect = 0.071
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEE 43
+K + + E +EEE+ EE++ ++ EE ++ EE
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 28.5 bits (64), Expect = 0.52
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
+ D E +EE ++EE++ ++ EE ++ EE
Sbjct: 62 AAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 28.5 bits (64), Expect = 0.60
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+ + EE +E E++EE++ ++ EE ++ EE
Sbjct: 63 AKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 28.1 bits (63), Expect = 0.73
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
D +EEE +EE++ ++ EE ++ EE + E+++
Sbjct: 63 AKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEVLE 104
Score = 27.7 bits (62), Expect = 1.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ +E + EE +EEE++EE++ ++ EE + E
Sbjct: 58 IAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVE 93
Score = 25.4 bits (56), Expect = 6.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 23 EEEVEEE----EEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
EE+ +E + EE +EEE++EE++ ++ E E KA
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKA 98
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 32.3 bits (74), Expect = 0.027
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
EEEEEEEEEEEEEEE EV M+ E+ A
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLPAS 437
Score = 32.0 bits (73), Expect = 0.037
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E EEEEEEEEEEEEEEE E + E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 31.6 bits (72), Expect = 0.040
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
VE EEEEEEEEEEEEEEE M+ A
Sbjct: 399 VERWAAEEEEEEEEEEEEEEEPVAEVMMMPA 429
Score = 30.8 bits (70), Expect = 0.080
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
E EEE EEEEEEEEEEE E E+++
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQL 434
Score = 30.4 bits (69), Expect = 0.13
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
E+E V E EEEEEEEEEEEEEEE E+
Sbjct: 393 EKEHPVVERWAAEEEEEEEEEEEEEEEPVAEV 424
Score = 29.3 bits (66), Expect = 0.32
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 35 EEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
EEEEEEEEEEEEE E V E ++ +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQ 433
Score = 29.3 bits (66), Expect = 0.32
Identities = 18/28 (64%), Positives = 18/28 (64%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
V E EEEEEEEEEEEEEEE E
Sbjct: 398 VVERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.5 bits (64), Expect = 0.48
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
VE EEEEEEEEEEEEEE E
Sbjct: 399 VERWAAEEEEEEEEEEEEEEEPVAEVMMMPA 429
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 31.8 bits (73), Expect = 0.029
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ E E EE+ E++++++E+E+E++EEE +
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 31.4 bits (72), Expect = 0.050
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D E E +EE+ E++++++E+E+ + +EA+
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 29.1 bits (66), Expect = 0.28
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ E +EE+ E++++++E+E+E++E E
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEE 70
Score = 27.9 bits (63), Expect = 0.70
Identities = 9/29 (31%), Positives = 22/29 (75%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E +E + E++++++E+E+E++EEE +
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 27.2 bits (61), Expect = 1.2
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E +EE E++++++E+E+E++EEE +
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 27.2 bits (61), Expect = 1.3
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
+ E EE+ E +++++E+E+E++EEE + + E
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 26.8 bits (60), Expect = 2.1
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
S+ + + E++ +++E+E+E++EEE + + EE
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 26.0 bits (58), Expect = 3.5
Identities = 8/34 (23%), Positives = 25/34 (73%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
++ + ++EE+ ++++++E+E+E++EEE +
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 32.2 bits (74), Expect = 0.031
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
+E + EE+E+ EE ++EEEEEEEE V+ V + I
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPI 362
Score = 30.3 bits (69), Expect = 0.12
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
+ + + E+E+ EE ++EEEEEEEE ++ + +E+
Sbjct: 325 KRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIEL 364
Score = 29.9 bits (68), Expect = 0.17
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+E+ EE+E+ EE ++EEEEEEEE +++ +
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPI 362
Score = 28.4 bits (64), Expect = 0.55
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
S + + EE+ + EE ++EEEEEEEE ++ ++ +
Sbjct: 324 SKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPI 362
Score = 28.0 bits (63), Expect = 0.93
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPL 64
+E++ EE+E+ EE ++EEEE E +V+ P+
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPI 362
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 32.1 bits (73), Expect = 0.032
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
EE E E EE+EE+++E+++
Sbjct: 579 NEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 0.11
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D E E E E EE+EE+++E+++
Sbjct: 573 DPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.4 bits (66), Expect = 0.24
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E EE E E EE+EE+++E+ +
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 0.32
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEE 38
+ S + E + E EE+EE+++E+++
Sbjct: 579 NEASEETETITVPENNEEDEEDDDEDDD 606
Score = 26.3 bits (58), Expect = 3.4
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEE 39
+ ++ +S++ E EE+EE+++E+++
Sbjct: 572 YDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 25.5 bits (56), Expect = 5.5
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEE 41
+ E E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 32.0 bits (72), Expect = 0.032
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEE 49
EE EE+ + E + E EEE+EEEE E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIE 110
Score = 31.2 bits (70), Expect = 0.058
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
+E EE+ + E + E EEE+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 31.2 bits (70), Expect = 0.072
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
G E EEE + E + E EEE+EEEE E + E+
Sbjct: 83 GEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEV 116
Score = 30.8 bits (69), Expect = 0.092
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
E EE EEE+ + E + E EEE+EEEE
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEE 108
Score = 30.4 bits (68), Expect = 0.12
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
E E EEE+ + E + E EEE+EEEE+E + EV PLD
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIE-APDPEV---NPLD 120
Score = 28.1 bits (62), Expect = 0.70
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE----MVKEA-EVITKA 62
+G +++E + E E EEE+EEEE E + E + E + +EA + + KA
Sbjct: 82 AGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDAEGLSGLAREACDALKKA 138
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 31.7 bits (73), Expect = 0.036
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK-AP 63
E+ E +EE E EEEEE++EE++ + ++ +V+ + AP
Sbjct: 65 EQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMRFAP 108
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 31.6 bits (72), Expect = 0.039
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
SS S SSDD E E+ +++ EEEEEEEE EV V
Sbjct: 5 GSSSDSPYSSDDSPSLEPPELPPKKKGRRRVSPVEEEEEEEEAEVVAV 52
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 31.7 bits (72), Expect = 0.042
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D E EE E +E EE+E E + E EE E + E +++E
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSE 287
Score = 29.8 bits (67), Expect = 0.20
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
D + E EE E +E EE+E E + E EE EM
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEM 277
Score = 26.7 bits (59), Expect = 2.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DE ++++ + E+ E EE E +E EE+E E
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAE 266
Score = 26.7 bits (59), Expect = 2.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + G + E+ E EE E +E EE+E E + E E
Sbjct: 231 ADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
Score = 25.6 bits (56), Expect = 6.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DE E+E E + E EE E + E E+ E +E +
Sbjct: 258 DESEEDEAEATDGEGEEGEMDAAEASEDSESDESD 292
Score = 25.2 bits (55), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
++D EG E E + E E+ E +E +E+ E E
Sbjct: 267 ATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 31.3 bits (71), Expect = 0.053
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
F SS + + +E++EE EE+ EE +E+EEE+ E+E
Sbjct: 36 SFRSSSNPMPPIPLQLLEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.4 bits (66), Expect = 0.25
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTS 73
E+ EE+EE+ EE +E+EEE+ E+E ++ + K P D +S
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFSILGHP-MCLKRPRDGDSSSSSS 101
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEE 48
E++ E+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 31.5 bits (71), Expect = 0.056
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEE------EEEEEEEEEEVEMVKE 55
+ + V EEEE E EE+EE E+E E+ EEEEEEE++ +K+
Sbjct: 132 KPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 28.5 bits (63), Expect = 0.57
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ V EEEEE E EE+EE E+E + V+ E E
Sbjct: 137 DLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEE 171
Score = 26.5 bits (58), Expect = 2.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEE-EEEEEEEEEEEEEVEMVKE 55
D + SS + + + V + EEEEE E EE+EE E+E ++V E
Sbjct: 113 DEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDE 165
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 31.1 bits (71), Expect = 0.061
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 30 EEEEEEEEEEEEEEEEEEEEVEM 52
EEEEEEE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDMG 305
Score = 30.0 bits (68), Expect = 0.17
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 26 VEEEEEEEEEEEEEEEEEEEE 46
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 0.19
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 27 EEEEEEEEEEEEEEEEEEEEE 47
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 0.19
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 28 EEEEEEEEEEEEEEEEEEEEE 48
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 0.19
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 29 EEEEEEEEEEEEEEEEEEEEE 49
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 0.19
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 23 EEEVEEEEEEEEEEEEEEEEE 43
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.2 bits (66), Expect = 0.24
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 20 VEEEEEVEEEEEEEEEEEEEE 40
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.8 bits (65), Expect = 0.40
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 22 EEEEVEEEEEEEEEEEEEEEE 42
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 0.46
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 24 EEVEEEEEEEEEEEEEEEEEE 44
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 0.48
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEE 37
S+ ++ ++ EEEEEEE++
Sbjct: 273 SAAAAAAAAAAAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 0.53
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 25 EVEEEEEEEEEEEEEEEEEEE 45
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.1 bits (63), Expect = 0.65
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 21 EEEEEVEEEEEEEEEEEEEEE 41
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 1.5
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEE 36
L + ++ ++ ++ EEEEEEE++
Sbjct: 268 ALANPSAAAAAAAAAAAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 31.1 bits (70), Expect = 0.064
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ E EE+EEEEEEEEEEEE +V V++
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEK 251
Score = 29.1 bits (65), Expect = 0.31
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEE 34
+ SS SD E E+EEE EEEEEEEE
Sbjct: 212 LRTPPNSSSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 28.7 bits (64), Expect = 0.41
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEE 39
SS G + E E +EEEEEEEEEEEE
Sbjct: 218 SSSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 28.4 bits (63), Expect = 0.54
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 23 EEEVEEEEEEEEEEEEEEEEE 43
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 27.6 bits (61), Expect = 0.93
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 25 EVEEEEEEEEEEEEEEEEEEE 45
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 26.4 bits (58), Expect = 2.4
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 21 EEEEEVEEEEEEEEEEEEEE 40
+ E E+EEEEEEEEEEEE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 30.7 bits (69), Expect = 0.071
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
D EE EE EEE E+ E+ +EE+EE EE EE
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSK 64
Score = 29.5 bits (66), Expect = 0.21
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
S E VEE+EE E+ E+ +EE+EE EE EEE
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 28.7 bits (64), Expect = 0.40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
DE + + + EE EE+EEE E+ E+ +EE+EE E V+E +
Sbjct: 19 DEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKA 65
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 30.9 bits (70), Expect = 0.081
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
EE+E + E EE E E E EE++ +
Sbjct: 144 EEKELLREVEELESRLATEPSPAPELEEQLAL 175
Score = 30.5 bits (69), Expect = 0.095
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ S ++ +++ E EVEE E E E EE+ +E
Sbjct: 132 ELGSFYEYPKTDEEK--ELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 29.3 bits (66), Expect = 0.27
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
E+E E EE E E E EE+ M K
Sbjct: 145 EKELLREVEELESRLATEPSPAPELEEQLALMEK 178
Score = 28.2 bits (63), Expect = 0.61
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ +EE E E EE E E E E + E
Sbjct: 141 KTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 26.2 bits (58), Expect = 3.6
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
E + EE+E E EE E E E+ ++ ++ K+
Sbjct: 138 EYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKS 179
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 30.4 bits (69), Expect = 0.099
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E + + E EE E +EEE E E+ E K+
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E + + EE EE E +EEE E K+ K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 26.5 bits (59), Expect = 2.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
+ EE EE E +EEE E E++E
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESK 193
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 30.3 bits (69), Expect = 0.10
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
EE++EEEEEEE E EEEEEEE+EEE+ E + +
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIK 59
Score = 29.2 bits (66), Expect = 0.34
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
VEE+ E EEEEE E EEEEEEE+EEE++E
Sbjct: 16 VEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 28.4 bits (64), Expect = 0.55
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
S +E +EEEEE E E EEEEEEE+EEE++E+ + K E+
Sbjct: 10 SKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEI 58
Score = 26.9 bits (60), Expect = 1.7
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
K S E EEEE EE E EEEEEEE+EEE++E
Sbjct: 7 EKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 30.3 bits (69), Expect = 0.10
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ E+EEE EEE E EE +EEE+ +E E+E ++ +E
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKRE 134
Score = 29.9 bits (68), Expect = 0.12
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+E+EE EEEE E EE +EEE+ +E E+E+ +K +
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREK 135
Score = 29.9 bits (68), Expect = 0.14
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
G ++ EEEEEVE EE +EEE+ +E E+E + + E +E E
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 29.2 bits (66), Expect = 0.24
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ + +++ +EEEEEEE E EE +EEE+ +E +E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLE 125
Score = 26.9 bits (60), Expect = 1.6
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ E ++EEE+++E E+E + + E+ E E ++ E++KE
Sbjct: 110 EVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKE 149
Score = 26.1 bits (58), Expect = 3.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
++E VE EE EEE+ +E E+E + + E+ E E
Sbjct: 104 EEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENER 141
Score = 24.9 bits (55), Expect = 6.6
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ + +++E+EEEEEEE E EE +EE ++ + E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLE 125
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 30.4 bits (69), Expect = 0.11
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EE E E EE EE + E+ + E++ ++E
Sbjct: 833 YEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
Score = 28.8 bits (65), Expect = 0.43
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
V+ E+E EE EEE EE EE + E+V+ + +
Sbjct: 822 VKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDID 859
Score = 28.4 bits (64), Expect = 0.52
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
E EEE EE EE + E+ + E++ ++E+ ++
Sbjct: 835 EPEEETAEEPEEVDPEDVKSEDDIDDEDTGQL 866
Score = 28.0 bits (63), Expect = 0.88
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E + EE EE EE EE + E+ + E++ ++
Sbjct: 829 EPLPYEEPEEETAEEPEEVDPEDVKSEDDIDD 860
Score = 27.7 bits (62), Expect = 1.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
EE EE EE EE + E+ + E++ ++E+
Sbjct: 833 YEEPEEETAEEPEEVDPEDVKSEDDIDDED 862
Score = 27.3 bits (61), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
+ + + E E EE EEE EE EE + E VK + I
Sbjct: 820 YKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDI 858
Score = 27.3 bits (61), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ + E E + EE EEE EE EE + E+ + + + +
Sbjct: 823 KTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDD 860
Score = 26.9 bits (60), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
EE EEE EE EE + E+ + E++ + E
Sbjct: 833 YEEPEEETAEEPEEVDPEDVKSEDDIDDED 862
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 30.5 bits (69), Expect = 0.11
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEE---EEEEEEEEEEEEEEEVEMV 53
G SDDEG +++ +E+ E + +++ +E+ E+ + + V
Sbjct: 246 GIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDNV 290
Score = 28.2 bits (63), Expect = 0.73
Identities = 7/51 (13%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEE----EEEEEEEEVEM 52
S + +G++ ++E + +++++E+ E + +++ +E+ E
Sbjct: 233 AKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGED 283
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 30.2 bits (68), Expect = 0.11
Identities = 22/38 (57%), Positives = 24/38 (63%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
DDEG E E+ EEEE EE EE+EEEE EEE E
Sbjct: 66 DDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFE 103
Score = 25.2 bits (55), Expect = 6.6
Identities = 21/45 (46%), Positives = 23/45 (51%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
PD GR + EEE EE EE+EEEE EEE EE E
Sbjct: 60 PDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 30.5 bits (69), Expect = 0.12
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
R ++ E EE E E+ E EE+ E E E E E+ P
Sbjct: 392 REEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQP 442
Score = 30.1 bits (68), Expect = 0.12
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
EEE E EE E E+ E EE+ E+ + E E + L+
Sbjct: 393 EEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438
Score = 30.1 bits (68), Expect = 0.16
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ E+ E EE+ E E+E E+E+E E E E
Sbjct: 404 ERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEE 445
Score = 28.6 bits (64), Expect = 0.46
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ EE E E+ E EE+ E E+E + + E +
Sbjct: 395 EEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEE 444
Score = 28.6 bits (64), Expect = 0.57
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
R+ +D + E + E+E E+E+E EE + EEEEE
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 27.8 bits (62), Expect = 0.79
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E E+ E + EEEE + E EE E E + AE
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAE 415
Score = 27.8 bits (62), Expect = 0.83
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D S + ++D V E EEEE + E EE E E+ E E + E
Sbjct: 369 DIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRE 422
Score = 27.1 bits (60), Expect = 1.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E E+ E+E E+E+E EE + EEEE
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 26.7 bits (59), Expect = 2.0
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
S +E + E EE E E+ E EE+ E +
Sbjct: 389 ISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
Score = 26.7 bits (59), Expect = 2.2
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+ E EE +E E+ E EE+ E E+ ++ +
Sbjct: 396 EALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443
Score = 26.7 bits (59), Expect = 2.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ E E+ E E+E E+E+E E +E E
Sbjct: 410 QAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 26.7 bits (59), Expect = 2.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
R ++ EE+ E E+E E+E+E EE + E +EA
Sbjct: 405 RLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 26.3 bits (58), Expect = 3.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EEE + E EE E E+ E EE+ + +
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
Score = 25.1 bits (55), Expect = 8.1
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEESAVIP 81
E + E E+ + E + EEEE + E E EAE +A D R + E
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433
Query: 82 QEIVNYADEAP 92
++ + A
Sbjct: 434 EDELEEAQPEE 444
Score = 25.1 bits (55), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPL 64
+ E+ + EEEE + E EE E E+ ++A + PL
Sbjct: 383 AKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPL 426
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar
iron transporter VIT1.
Length = 209
Score = 30.0 bits (68), Expect = 0.12
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
V+ E ++EE E E E+ E E + E E EE E+
Sbjct: 55 SVKSERDLEEAELEREKRELENDPEGEREELAEI 88
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 30.0 bits (68), Expect = 0.13
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+E VEEE E E EE E+E EEE EEE E E+ ++A++
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKI 46
Score = 25.3 bits (56), Expect = 5.5
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
EE+ + EEE EE E EE E+E EEE VE EAE++ +
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEE 42
Score = 25.3 bits (56), Expect = 5.6
Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
EE EVEE E+E EEE EEE E E + E K AE
Sbjct: 12 VEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
Score = 25.3 bits (56), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
++ VEE E E EEE EEE E E +EE+ + E+ + +
Sbjct: 13 EETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLD 54
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 30.0 bits (68), Expect = 0.13
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
D V+++ ++EEE+ E+++E EE E + +V
Sbjct: 138 DPTVDDKPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 28.8 bits (65), Expect = 0.31
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEVE 51
V+++ + EEE+ E+++E EE E ++
Sbjct: 141 VDDKPKIEEEKAEKDQEPEESETKLS 166
Score = 28.1 bits (63), Expect = 0.61
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEE 41
DD+ EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.1 bits (63), Expect = 0.71
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
++ + EEE+ E+++E EE E + V
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 27.3 bits (61), Expect = 1.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+++ + EEE+ E+++E EE E + ++ K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHK 173
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 30.4 bits (68), Expect = 0.13
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
E E+ + E E++ EE E E+E+E+E E E +EAE KA
Sbjct: 583 EAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKA 624
Score = 27.3 bits (60), Expect = 1.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
R E + E E + EE E E+E+E+E E E E E E +A
Sbjct: 581 REEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKA 624
Score = 25.4 bits (55), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
EE E+ + E E++ EE E E+E+E E +E E
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKERERERE 615
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 30.1 bits (69), Expect = 0.13
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+++ +E+EEE+EE+EE EEE + +E +KEA
Sbjct: 473 DLDLGKEDEEEKEEKEEAEEEFKPLLERLKEA 504
Score = 26.6 bits (60), Expect = 2.1
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEE---EEEEEEEEEEVEMVKEAE 57
L +F + D + +E+E E+EE+EE EEE + E +E ++V+ V+ +
Sbjct: 457 YLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVRLSH 516
Query: 58 VITKAP 63
+T +P
Sbjct: 517 RLTDSP 522
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 30.2 bits (69), Expect = 0.14
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 16/70 (22%)
Query: 14 SSDDEGV-EEEEEVEEEEEEE---------------EEEEEEEEEEEEEEEEVEMVKEAE 57
++DD +EE EE +++ +EE+EE EEE E E E V EA
Sbjct: 253 TADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEAL 312
Query: 58 VITKAPLDCM 67
+ P+D +
Sbjct: 313 ALPPPPVDDI 322
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 30.1 bits (69), Expect = 0.15
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
E++++E E +E + + AE I+
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETIS 569
Score = 28.2 bits (64), Expect = 0.61
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
+D+ +E E +E + EE E +
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETI 568
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 30.2 bits (69), Expect = 0.15
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 11 SGRSSDDEGVEEEEEVE-----------EEEEEEEEEEEEEEEEEEEEEEVE 51
+ E E E+VE EE EEE++++ +++ +E+++E VE
Sbjct: 334 ENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 30.0 bits (67), Expect = 0.16
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCM 67
+ + R EG ++ E+ +EE E E E E E + +E + K ++ +
Sbjct: 544 NGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEIYSLLKKTINRI 603
Query: 68 CRPCTSIEESAVIPQEIVNYADE 90
+ IP+ I+N ++
Sbjct: 604 --------DMNKIPRPIINTQEK 618
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 29.7 bits (67), Expect = 0.17
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 14 SSDDEGVEEEEEVEE--EEEEEEEEEEEEEEEEEEEEEVEMVKE 55
SD + +E+E E E+ +++EE E ++++E EE++ V++
Sbjct: 69 LSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQK 112
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 29.7 bits (67), Expect = 0.17
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
E + +++ E EE +E ++ ++VE K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKK 194
Score = 26.6 bits (59), Expect = 2.1
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
++ +++EE EE +E + +V TK
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVETK 193
Score = 26.2 bits (58), Expect = 3.3
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E + +++EE EE +E ++ K K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.8 bits (68), Expect = 0.17
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
S VEEEE +EE + E EEE + E EE E E +AE AP
Sbjct: 32 KSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAP 81
Score = 29.4 bits (67), Expect = 0.22
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
KS + ++E +EE E EEE + E EE E EEE A +A
Sbjct: 30 EVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAA 86
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 29.7 bits (68), Expect = 0.17
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
++ E EE EEEE E EEE + V + +
Sbjct: 331 KKAAELAAEEAEEEEAAEPEEESWDDVLPVDPL 363
Score = 26.6 bits (60), Expect = 2.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 33 EEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
E++ E EE EEEE +E P+D
Sbjct: 329 REKKAAELAAEEAEEEEAAEPEEESWDDVLPVD 361
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 29.8 bits (67), Expect = 0.18
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
K S DD+ + E +E +E+EEEEE EEEEEEE+E+E
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 27.9 bits (62), Expect = 0.75
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
S D + VEE+E E+EEEEE EEEEEEE+E+E
Sbjct: 246 KSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 27.9 bits (62), Expect = 0.85
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
S D+E +++ + EE+E +E+EEEEE EEEEEEE+ +
Sbjct: 247 SDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 26.7 bits (59), Expect = 1.8
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
++ S V+ ++ +EE+++++ + EE+E +E+EEE E +E E
Sbjct: 229 AAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 25.2 bits (55), Expect = 8.2
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D+ +++++ + EE+E +E+EEEEE EEEEEE +
Sbjct: 246 KSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEED 282
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 29.5 bits (67), Expect = 0.19
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
G E+ E E EE E E+E+ EEE+EEEE+E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEG 32
Score = 29.5 bits (67), Expect = 0.24
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+ EEE+EE E E+E+ EEE+EEEE+E + +
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQ 39
Score = 29.1 bits (66), Expect = 0.30
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ E++EEE EE E E+E+ EEE+EEEE+ +
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 25.3 bits (56), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E+ EEE EE E E+E+ E E +E +
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEK 30
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 29.6 bits (67), Expect = 0.20
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+E +EEE EE+EE EE E +EE E
Sbjct: 218 RAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.5 bits (66), Expect = 0.21
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
EG EE +EE E+E E +E EE E E+ V+ ++
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDL 379
Score = 29.1 bits (65), Expect = 0.34
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEE--EEEEEEEEEEEEVEMVKEAEV 58
K G +E +EE E E E +E EE E E E + ++ E + E E+
Sbjct: 337 KQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETEI 388
Score = 28.7 bits (64), Expect = 0.38
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ V E++E + EE +EE E+E E +E E+ +
Sbjct: 330 EVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMEL 371
Score = 24.9 bits (54), Expect = 8.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+ S DE E+E E++E EE E E E + ++
Sbjct: 336 EKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 29.5 bits (67), Expect = 0.23
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 16 DDEGVEEEEE------VEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
DD+G + EE VE E E + E+E E+ + + +++ +AEV
Sbjct: 3 DDKGTDPEEGGSGWFLVEAEAECSDGEDELEDLFDTGSDISDLIDDAEV 51
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
D G+ E E + EEE E E E
Sbjct: 114 EQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSE 147
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 29.6 bits (67), Expect = 0.24
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
SSD E EE++E ++ +E+ +EE EE+EEE EE E E E ++
Sbjct: 128 ESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASE 176
Score = 28.1 bits (63), Expect = 0.77
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S DD+ EEE EVEE+E+ ++E E + E ++E E + E E
Sbjct: 94 SDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137
Score = 27.3 bits (61), Expect = 1.2
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 10 SSGRSSDDEG--VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
SDDEG ++ E + E E + E+EEE++E ++ +E+ + E
Sbjct: 107 EEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEE 156
Score = 26.9 bits (60), Expect = 1.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D+ +EEEE E EE+E+ ++E E + E ++E E E
Sbjct: 92 LESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Score = 26.5 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
++E ++E E E +++++EEEE E EE+E+ + E
Sbjct: 80 EEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 26.5 bits (59), Expect = 2.2
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
E E+ +E +++++EEEE E EE+E+ ++E E +
Sbjct: 87 EAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 26.5 bits (59), Expect = 2.5
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ + ++G+E +++ ++EEEE E EE+E+ ++E E +VE KE E
Sbjct: 81 EERKKKEAEQGLESDDD-DDEEEEWEVEEDEDSDDEGEWIDVESDKEIES 129
Score = 26.2 bits (58), Expect = 3.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S + E E E+EEE++E ++ +E+ +EE E +EA
Sbjct: 112 SDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAA 162
Score = 25.8 bits (57), Expect = 4.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
S + + E+EEE +E ++ +E+ +EE EE+EEE E + KA
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKA 174
Score = 25.4 bits (56), Expect = 6.2
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
+ +EE +++E E+ E +++++EEEE EVE
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEE 108
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 29.3 bits (66), Expect = 0.25
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 8/54 (14%)
Query: 8 SKSSGRSSDDE-GVEEEEEVEE-------EEEEEEEEEEEEEEEEEEEEEVEMV 53
++ + E E V E E E + EEE E V
Sbjct: 123 GEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSV 176
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 29.4 bits (66), Expect = 0.26
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 22 EEEEVEEEEEEEEEEEEEE----EEEEEEEEEVEMVKEAEV 58
EEE+V + EEE+EEE E + +++ ++ +
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDE 41
Score = 29.0 bits (65), Expect = 0.34
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
++++ ++E + +++E E+E+E+EE++EE E +AE+
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEI 57
Score = 29.0 bits (65), Expect = 0.41
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+E V + EE+EEE E + +++E
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEV 34
Score = 27.1 bits (60), Expect = 2.0
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
+ + EE +EEE E + +++E
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVP 35
Score = 25.9 bits (57), Expect = 3.9
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE--EEEVEMVKEAEVITKAPLDCM 67
RS+ + ++E E+E+E+EE++EE E + E + E +KE + K + +
Sbjct: 22 ARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQKI 79
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 29.4 bits (66), Expect = 0.26
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
V+EEE +++E + E E EE EEEV
Sbjct: 240 VQEEESIDDELDVLREIEAEEAGIGPIEEEVV 271
Score = 29.0 bits (65), Expect = 0.41
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
++ +E + + E E EE EEE + +
Sbjct: 243 EESIDDELDVLREIEAEEAGIGPIEEEVVDSQA 275
Score = 28.6 bits (64), Expect = 0.45
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EEE +E + E E EE EEE V+
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVD 272
Score = 27.1 bits (60), Expect = 1.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
++E +++E +V E E EE EEE + +
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAAN 277
Score = 25.9 bits (57), Expect = 3.7
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
D+ V E E EE EEE + + +E
Sbjct: 245 SIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 25.1 bits (55), Expect = 8.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
E+ +EEE ++E + E E EE + ++E V
Sbjct: 238 ELVQEEESIDDELDVLREIEAEEAGIGPIEEEVV 271
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.6 bits (67), Expect = 0.26
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.2 bits (66), Expect = 0.28
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S+ S R ++ + E++++ E ++ E+E++E++E++
Sbjct: 1345 SASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDD 1387
Score = 28.5 bits (64), Expect = 0.51
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEE 41
+S +++ EV++ E+E++E++E+++
Sbjct: 1354 RRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 28.5 bits (64), Expect = 0.55
Identities = 7/31 (22%), Positives = 22/31 (70%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEE 43
+ D E++++ E ++ E+E++E++E+++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 26.9 bits (60), Expect = 2.2
Identities = 8/41 (19%), Positives = 23/41 (56%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
S R + + E +++ E ++ E+E++E++E+++
Sbjct: 1348 QSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 26.5 bits (59), Expect = 2.4
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVE 51
+ + E++++ E ++ E+E++E +
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDD 1384
Score = 25.8 bits (57), Expect = 4.3
Identities = 7/41 (17%), Positives = 22/41 (53%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
++S S ++ + E++++ E ++ E+E++E+
Sbjct: 1343 QASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDED 1383
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 28.9 bits (65), Expect = 0.28
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
++ S + + +E+EE EEE EEE+EE +E E+E EE+ V++
Sbjct: 72 AANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKE 121
Score = 28.9 bits (65), Expect = 0.31
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
D+G E+E+ E EEE EEE+EE +E E+E EE + IT
Sbjct: 80 DKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITN 124
Score = 26.6 bits (59), Expect = 2.1
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
++ ++ ++ + +E+EE EEE EEE+EE +E E+ K + K
Sbjct: 73 ANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKE 121
Score = 26.2 bits (58), Expect = 2.7
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
K D+E EE EE +EE +E E+E EE+ E E+E+
Sbjct: 81 KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEIT 123
Score = 26.2 bits (58), Expect = 2.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
P S +++ + + +++E E EE +EEE+E E++E++ + E E
Sbjct: 35 FFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEES 91
Score = 25.9 bits (57), Expect = 4.4
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEE---EEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ + +S D E E EE EEE+E E++E++ + E+E+EE E E +E E +
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDE 105
Score = 25.1 bits (55), Expect = 7.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+ G + ++ EEE EE+EE +E E+E EE+ E E E+
Sbjct: 77 DKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITN 124
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 29.3 bits (66), Expect = 0.29
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E + EE E+ E+ E+ E +EE + E+ K+ +
Sbjct: 457 QSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVK 498
Score = 28.1 bits (63), Expect = 0.79
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
S V+E EE E+ E+ E+ E +EE + V +
Sbjct: 449 LKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPK 495
Score = 26.6 bits (59), Expect = 2.9
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
K S + EE + E+ E+ E +EE ++E ++V+ + E +
Sbjct: 454 EFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDT 505
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 29.0 bits (65), Expect = 0.30
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E E+++E ++E EEE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.4 bits (66), Expect = 0.30
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
K G D+ EE E + +EE+ ++EE E++++E+ +E+ E ++ E
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 27.8 bits (62), Expect = 0.82
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
KS+ S D+ E +E ++ ++ ++ E ++E + EE E
Sbjct: 357 KSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAE 399
Score = 27.1 bits (60), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ ++ EV++E + EE E + +EE+ ++EE E
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE 413
Score = 25.1 bits (55), Expect = 6.8
Identities = 8/38 (21%), Positives = 27/38 (71%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEE 44
S ++ ++ +++ +EE E +++E+ +E++E+ +++E
Sbjct: 395 SEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 25.1 bits (55), Expect = 7.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ E ++E + EE E + +EE+ ++EE E++
Sbjct: 382 TKKLGEVKDETDASEEAEAKAKEEKLKQEENEKK 415
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 29.2 bits (65), Expect = 0.32
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
G + + + E EE E +E E K A
Sbjct: 376 PGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 28.0 bits (62), Expect = 0.76
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 3/70 (4%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSI 74
D + + + E EE E + + E AP+ +P
Sbjct: 376 PGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPE--KAAPIPDPAKPDELA 433
Query: 75 -EESAVIPQE 83
P E
Sbjct: 434 VAGPGDDPAE 443
Score = 28.0 bits (62), Expect = 0.80
Identities = 8/48 (16%), Positives = 13/48 (27%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
D + + + + EE E +E E EV
Sbjct: 369 ADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEV 416
Score = 26.5 bits (58), Expect = 2.8
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 9 KSSGRSSD-DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+S+ + E E E+ + + + + E E +E
Sbjct: 358 ESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASE 407
Score = 25.7 bits (56), Expect = 5.7
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 9/62 (14%)
Query: 4 DFHSSKSSGRSSDDEGVEEEE---------EVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
S + + + +E E+ + + E EE E E
Sbjct: 355 RDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEP 414
Query: 55 EA 56
E
Sbjct: 415 EV 416
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 29.1 bits (66), Expect = 0.32
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E E E E EE EEE EEE+E +++
Sbjct: 25 DPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQ 67
Score = 25.7 bits (57), Expect = 4.3
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E E E EE EEE + E E
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEE 60
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism
/ General function prediction only].
Length = 324
Score = 29.1 bits (66), Expect = 0.32
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
+ EV E +E+ E E E++ + E E +K+A+ +
Sbjct: 10 KLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAV 48
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 28.9 bits (65), Expect = 0.34
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
D++ + + E+ E ++ EE +E +E E EEV A + P
Sbjct: 140 DEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEP 187
Score = 26.2 bits (58), Expect = 3.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
R+ + + +EE +EV+E E EE ++ +E E+ M
Sbjct: 153 RTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTM 192
Score = 25.0 bits (55), Expect = 7.7
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDC 66
E+ E ++ EE +E +E E EE ++ + ++ +
Sbjct: 151 EDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSR 194
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 28.8 bits (64), Expect = 0.38
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ + SS + D +GV E +++E + +EEE+ ++++ E
Sbjct: 252 YKQNLSSNKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDN 298
Score = 28.4 bits (63), Expect = 0.54
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
G SDD+ + +EEE+ ++++ E+ ++ + + A
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNGA 314
Score = 28.4 bits (63), Expect = 0.59
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
DF S DDEG + EEE+ ++++ E+ ++ +E
Sbjct: 263 DFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDE 308
Score = 26.5 bits (58), Expect = 3.0
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S+K + G E +++ + +EEE+ ++++ E+ ++
Sbjct: 258 SNKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDD 300
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 28.9 bits (64), Expect = 0.40
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEE-------EEEEEEEEEEEEEEEEEEEVE 51
S+ S S +EG++E + E E EE+E EEE+EEEE E
Sbjct: 737 KSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKE 788
Score = 25.4 bits (55), Expect = 7.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 5 FHSSKSSGRSSDD-EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
F+S +SD EE+E EEE+EEEE +E + ++++ M+K V A
Sbjct: 754 FYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLKSLPVFASA 812
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.8 bits (65), Expect = 0.43
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
EEE+ ++ EEE +EE +E++EE+++EE + +
Sbjct: 268 EEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 28.0 bits (63), Expect = 0.76
Identities = 14/29 (48%), Positives = 24/29 (82%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
EEEE++ + EEE +EE +E++EE+++EE
Sbjct: 267 EEEEKILKAAEEERQEEAQEKKEEKKKEE 295
Score = 27.2 bits (61), Expect = 1.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E +EE +E++EE+++EE E + + EE
Sbjct: 279 ERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 27.2 bits (61), Expect = 1.5
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+++ ++ EE +EE +E++EE+++EE E + +
Sbjct: 269 EEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 26.8 bits (60), Expect = 1.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
E +EE E++EE+++EE E + + EE
Sbjct: 276 AEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 26.8 bits (60), Expect = 2.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
EEE EE +E++EE+++EE E + + E ++ E
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLE 312
Score = 26.4 bits (59), Expect = 2.2
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
R ++E + + E E +EE +E++EE+++EE E + +E
Sbjct: 265 REEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 24.9 bits (55), Expect = 8.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
EEE+ + EEE +EE +E++EE + + + K
Sbjct: 268 EEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 28.9 bits (64), Expect = 0.44
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ ++V EEEE E +EE EE EE+++E ++ E +
Sbjct: 236 DGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDE 272
Score = 25.0 bits (54), Expect = 9.1
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
EEE E++EE EE EE+++E E+ E + E K E I
Sbjct: 243 EEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEI 281
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 28.6 bits (64), Expect = 0.44
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E E EEE +E ++ + ++ EE ++ E E++ +A
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPE-ELMFDAV 315
Score = 27.1 bits (60), Expect = 1.9
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 13 RSSDDEGVEEEEE----VEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
R++ E + E E EEE +E ++ + ++ EE + + E
Sbjct: 262 RATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.5 bits (64), Expect = 0.45
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 26 VEEEEEEEEEEEEEEEE 42
VEEEEEE +EEEEEE
Sbjct: 73 VEEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 28 EEEEEEEEEEEEEEEE 43
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 29 EEEEEEEEEEEEEEEE 44
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 30 EEEEEEEEEEEEEEEE 45
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 31 EEEEEEEEEEEEEEEE 46
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 32 EEEEEEEEEEEEEEEE 47
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 33 EEEEEEEEEEEEEEEE 48
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 34 EEEEEEEEEEEEEEEE 49
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 25.4 bits (56), Expect = 4.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 21 EEEEEVEEEEEEEEE 35
EEEEE +EEEEEE
Sbjct: 75 EEEEENGNDEEEEEE 89
Score = 24.6 bits (54), Expect = 7.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 20 VEEEEEVEEEEEEEEEE 36
VEEEEE +EEEEEE
Sbjct: 73 VEEEEEENGNDEEEEEE 89
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.8 bits (64), Expect = 0.45
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+D ++ ++ E++E+ E+ EE +E EE + VK E
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDE 4086
Score = 28.4 bits (63), Expect = 0.70
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
++D+ E+ EE +E EE E+ + +EE E+ E
Sbjct: 4056 AEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGE 4092
Score = 28.0 bits (62), Expect = 0.81
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEE 44
D S++ SD GV ++ V E E + EEE ++ +EE
Sbjct: 3851 DLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Score = 26.5 bits (58), Expect = 2.7
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
DD E+++ +E+E+EEE ++ ++E + + E
Sbjct: 3940 DDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Score = 26.1 bits (57), Expect = 3.8
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 16 DDEGVEEEE----EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ E E E ++ E E + EEE ++ +EEV + E
Sbjct: 3854 ESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPE 3897
Score = 26.1 bits (57), Expect = 4.3
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
SK + ++ +E+E EEE ++ ++E + + +E
Sbjct: 3937 SKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 3978
Score = 25.7 bits (56), Expect = 5.4
Identities = 11/59 (18%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEE---EEEEEEEEEEEEEEEVEMVKEAEV 58
P+ + + S+++ E +E++ E+++ +E+E+EEE ++ + E+
Sbjct: 3911 PNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969
Score = 25.7 bits (56), Expect = 5.7
Identities = 8/36 (22%), Positives = 23/36 (63%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D++ +EE ++E+ ++++ + E++E+ E+ E
Sbjct: 4033 DEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFE 4068
Score = 25.3 bits (55), Expect = 6.8
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
S +D+ E++ +E+E+EEE ++ ++E + +++ LD
Sbjct: 3937 SKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLD 3988
Score = 25.0 bits (54), Expect = 9.0
Identities = 9/44 (20%), Positives = 27/44 (61%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
S ++ S ++ + +E+++ +E+E+EEE ++ ++E++
Sbjct: 3927 SAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQ 3970
>gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O),
Tet(W), and OtrA, containing tetracycline resistant
proteins. Tet(M), Tet(O), Tet(W), and OtrA are
tetracycline resistance genes found in Gram-positive and
Gram-negative bacteria. Tetracyclines inhibit protein
synthesis by preventing aminoacyl-tRNA from binding to
the ribosomal acceptor site. This subfamily contains
tetracycline resistance proteins that function through
ribosomal protection and are typically found on mobile
genetic elements, such as transposons or plasmids, and
are often conjugative. Ribosomal protection proteins are
homologous to the elongation factors EF-Tu and EF-G.
EF-G and Tet(M) compete for binding on the ribosomes.
Tet(M) has a higher affinity than EF-G, suggesting these
two proteins may have overlapping binding sites and that
Tet(M) must be released before EF-G can bind. Tet(M) and
Tet(O) have been shown to have ribosome-dependent GTPase
activity. These proteins are part of the GTP translation
factor family, which includes EF-G, EF-Tu, EF2, LepA,
and SelB.
Length = 237
Score = 28.4 bits (64), Expect = 0.47
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEE------EEEEEEEEEEEEEEVEMVKEAEV 58
+ D ++E++E E +E EE E + E +++A +
Sbjct: 155 GLYPNICDTNNIDDEQIETVAEGNDELLEKYLSGGPLEELELDNELSARIQKASL 209
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 28.7 bits (64), Expect = 0.48
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
V + E +EEE EEEEE + EE E E E+ A
Sbjct: 392 GHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEVPALQMPAASA 437
Score = 25.6 bits (56), Expect = 5.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 33 EEEEEEEEEEEEEEEEEVEMVKEAEVITKAPL 64
E +EEE EEEEE + EM E + +
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFEVPALQM 432
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 28.5 bits (64), Expect = 0.48
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDC 66
SS+SS ++ E ++ EE++ E + E EEE E + E E K P DC
Sbjct: 123 SSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPEDC 182
Query: 67 MCRPC 71
C
Sbjct: 183 FPEGC 187
Score = 26.2 bits (58), Expect = 2.7
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 2 LPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEE 39
L + SS S G + D E EEEEE EEEEE +E E+
Sbjct: 144 LEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 25.0 bits (55), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ +++ E + E EEEEEE EEEEE +E E
Sbjct: 135 KKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPE 180
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 28.5 bits (64), Expect = 0.49
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D E EE+EE E E+ E EE EE V
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVA 241
Score = 26.9 bits (60), Expect = 1.9
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
EE EE+EE E E+ +E E
Sbjct: 207 PEEAEEKEEAAAETAGVEDAAAAAAEAEEGE 237
Score = 24.6 bits (54), Expect = 9.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EE EE+EE E E+ E + E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEE 238
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 28.4 bits (64), Expect = 0.49
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+E + +E E +E+ EEE + + EEE+ + + A
Sbjct: 9 NEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDA 54
Score = 28.4 bits (64), Expect = 0.56
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
DE E + + EEE + + EEE + + V +A
Sbjct: 13 DFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDA 54
Score = 28.4 bits (64), Expect = 0.58
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
++D +E +E+ EEE + + EEE + +
Sbjct: 7 DLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 27.6 bits (62), Expect = 0.97
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+++ +E VE +E+ EEE + + EEE +
Sbjct: 4 KVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLS 44
Score = 27.6 bits (62), Expect = 1.1
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D E +E+ EEE + + EEE +
Sbjct: 4 KVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 26.8 bits (60), Expect = 1.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ K + D + E EV +E+ EEE + + EEE
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLS 44
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 28.6 bits (64), Expect = 0.50
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S + D+ + E+ E+E++ +E+E++++ EEEE + ++++
Sbjct: 205 SMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSD 255
Score = 25.9 bits (57), Expect = 3.4
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
DD+ EEEE + E+ + EE E E E E +
Sbjct: 232 EDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASAD 274
Score = 25.2 bits (55), Expect = 7.7
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+ DD +E+++ EEEE + E+ + EE EA
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEA 268
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 28.4 bits (63), Expect = 0.52
Identities = 12/33 (36%), Positives = 28/33 (84%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
G E EEE EEE+++EE+++++++E+E++++ +
Sbjct: 42 GKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDD 74
Score = 28.4 bits (63), Expect = 0.61
Identities = 10/40 (25%), Positives = 36/40 (90%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
G+ +++E +EEE++ EE+++++++E+E++++++++E++ +
Sbjct: 42 GKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDED 81
Score = 27.3 bits (60), Expect = 1.5
Identities = 11/34 (32%), Positives = 26/34 (76%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+E EEE EEE+++EE+++++++E+E + + +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDD 76
Score = 27.3 bits (60), Expect = 1.6
Identities = 11/40 (27%), Positives = 30/40 (75%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ EEE EE+++EE+++++++E+E++++++ + E E
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 25.0 bits (54), Expect = 8.3
Identities = 8/35 (22%), Positives = 31/35 (88%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+E ++EE+ +++++E+E++++++++E++E+E+ +
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 25.0 bits (54), Expect = 9.9
Identities = 7/33 (21%), Positives = 30/33 (90%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
+D+ E++++ ++E+E++++++++E++E+E+++
Sbjct: 53 EDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 28.7 bits (65), Expect = 0.53
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+DE + EE ++ + EEEEEEEEEE E E+ E V
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKELFGEDLV 555
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 28.6 bits (64), Expect = 0.53
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
S++S +D +EE ++ E E+E E + E ++ EEE +
Sbjct: 435 SRNSVMMDEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQD 478
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 28.4 bits (64), Expect = 0.56
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEE 43
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.0 bits (63), Expect = 0.78
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEV 50
E +E E EE E EE +EE E+
Sbjct: 240 AEADEAEPEEAETEEAQEEAAEKPP 264
Score = 27.7 bits (62), Expect = 0.99
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEM 52
E +E E EE E EE +EE E
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKPP 264
Score = 26.9 bits (60), Expect = 1.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEE 45
E E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.5 bits (59), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEE 46
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.5 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEE 42
R + E +E EE E EE +EE E+
Sbjct: 233 RDALARLAEADEAEPEEAETEEAQEEAAEK 262
Score = 26.1 bits (58), Expect = 3.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEE 44
E + E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 28.4 bits (63), Expect = 0.58
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
++ E+ E E EE E EEE E+ E E
Sbjct: 365 DDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 28.0 bits (62), Expect = 0.89
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
S S + + E++E E EE E EEE E+ E+E
Sbjct: 355 SSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 27.3 bits (60), Expect = 1.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
+ K + + E E EEEVE+ E+E + + +++E E
Sbjct: 367 ILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELEN 410
Score = 27.3 bits (60), Expect = 1.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
SS D+ + E+ E EE E EEE E+ E+E
Sbjct: 355 SSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 26.1 bits (57), Expect = 4.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
SS + + + + E E EE E EEE E+ E+
Sbjct: 355 SSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYED 394
Score = 26.1 bits (57), Expect = 4.3
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEE 44
+L + E E EE E EEE E+ E+E
Sbjct: 352 ILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 25.7 bits (56), Expect = 5.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E E EE E EEE E+ E+E + + + E E
Sbjct: 374 EIENRNPEESEHEEEVEDYEDENDHSKRICDDDELE 409
Score = 25.0 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D V E++ ++ E+ E E EE E EE
Sbjct: 354 DSSSVPLEKQFDDILYFEKMEIENRNPEESEHEE 387
Score = 25.0 bits (54), Expect = 9.9
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ +E E E EEE E+ E+E + + + + ++
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELEN 410
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 28.2 bits (64), Expect = 0.62
Identities = 9/43 (20%), Positives = 9/43 (20%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
EE E E E E A AP
Sbjct: 78 EEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAP 120
Score = 27.8 bits (63), Expect = 0.88
Identities = 10/44 (22%), Positives = 11/44 (25%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+EEE E E E E E A A
Sbjct: 76 IEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAA 119
Score = 27.4 bits (62), Expect = 1.4
Identities = 10/39 (25%), Positives = 11/39 (28%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+EEE E E E E E A A
Sbjct: 75 VIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAA 113
Score = 26.7 bits (60), Expect = 1.9
Identities = 7/45 (15%), Positives = 7/45 (15%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
E E E E E E A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPA 121
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 28.4 bits (64), Expect = 0.62
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
EEE + EEE E E EE EEEE EM+
Sbjct: 165 VEEEALTSTEEELELVSESAEEGVLEEEEREMIN 198
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 28.5 bits (64), Expect = 0.63
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ EE+ ++++++E+++EEE + EE ++ AE
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKARIEIAEA 772
Score = 27.4 bits (61), Expect = 1.2
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEV 50
+ VEE+ ++++++E+++EEE + EE+
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 26.2 bits (58), Expect = 3.1
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ E + ++++++E+++EEE + EE+ +E
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 26.2 bits (58), Expect = 3.2
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
EE+ ++++++E+++EEE + EE+ E+
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 25.8 bits (57), Expect = 4.9
Identities = 9/36 (25%), Positives = 25/36 (69%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
G+ ++ + + EE ++++++E+++EEE + EE+
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 25.4 bits (56), Expect = 7.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
EE+ +++++E+++EEE + EE+ E E
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKARIEIAEA 772
Score = 25.4 bits (56), Expect = 7.2
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D E + E+ ++++++E+++EEE + EE+
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 28.3 bits (63), Expect = 0.65
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
SS S +EE +V+ + E EE E E+E E E+ +
Sbjct: 42 SSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQ 86
Score = 27.5 bits (61), Expect = 1.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
D +S SS S E +E + + + E EE E E+E EVE +
Sbjct: 36 DSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQ 86
Score = 26.8 bits (59), Expect = 2.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E E E + EE+ EEE+ E + + + EVE +E
Sbjct: 262 AKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 25.2 bits (55), Expect = 8.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
DFH+ + + VEEE ++ + +EE EE + E
Sbjct: 413 DFHAIVPNNIPEELYWVEEEHQIYRKLQEERRLREEAIRAKAE 455
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 28.4 bits (63), Expect = 0.67
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+E E E E +E +E E + E E EEE V+ ++
Sbjct: 224 EQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDL 266
Score = 28.0 bits (62), Expect = 0.73
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
DD E+EE+ ++++ E E+EE+ E E E +E
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQE 237
Score = 27.2 bits (60), Expect = 1.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
+++G E E E +E E + E E EEE
Sbjct: 222 ENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 25.7 bits (56), Expect = 5.7
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+++ G + E E EE+ ++++ E E+EE+ E E E
Sbjct: 200 AEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGE 234
Score = 24.9 bits (54), Expect = 9.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+E E+ E E +E +E E + E E E EMV+
Sbjct: 223 NEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQ 260
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 28.1 bits (63), Expect = 0.69
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+ +EE E E E E + E E+
Sbjct: 955 ETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT 995
Score = 25.4 bits (56), Expect = 6.0
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEES 77
E V VE E EE E + EE VE + AP+ E+
Sbjct: 880 EPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIA--APVT---------EQP 928
Query: 78 AVIPQEIVNYADEAP 92
VI + V A E
Sbjct: 929 QVITESDVAVAQEVA 943
Score = 25.4 bits (56), Expect = 6.1
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 10/54 (18%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI----------TKAP 63
E E + E E E E EV + E T+AP
Sbjct: 971 AEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAP 1024
>gnl|CDD|233046 TIGR00603, rad25, DNA repair helicase rad25. All proteins in this
family for which functions are known are DNA-DNA
helicases used for the initiation of nucleotide excision
repair and transacription as part of the TFIIH
complex.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 732
Score = 28.2 bits (63), Expect = 0.69
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEE------EEEEEEVEMVKE 55
P F S+G+ ++G + + E EEEEE+E+EE E ++E+VE VK+
Sbjct: 164 PGFTGGASAGQLEANQGESAVPKDIADFYELEEEEEDEDEETATHSFEIDQEQVEEVKK 222
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 28.3 bits (63), Expect = 0.72
Identities = 10/30 (33%), Positives = 26/30 (86%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + +E E+++ +E+E+++E+E+E+E+E+E
Sbjct: 881 ISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 26.3 bits (58), Expect = 2.9
Identities = 9/25 (36%), Positives = 21/25 (84%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEE 43
E+++ E+E+++E+E+E+E+E+E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 25.9 bits (57), Expect = 4.8
Identities = 10/25 (40%), Positives = 22/25 (88%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVE 51
E E+++ +E+E+++E+E+E+E+E E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.0 bits (63), Expect = 0.72
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
S + + ++E + E+E++E EEE E E E +E E+E E +E
Sbjct: 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 27.8 bits (62), Expect = 0.73
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EE E+ ++E +E EE+E + ++E++E+ E
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKE 123
Score = 26.3 bits (58), Expect = 2.6
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
EE E E++E +E EE+E + ++E++E + K AE + K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKK 133
Score = 25.5 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 27/34 (79%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
+E +E++EV +E EE+E + ++E++E++E++V
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 28.1 bits (63), Expect = 0.75
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEE 40
DF + G E E +EE++++++E
Sbjct: 442 DFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
Score = 25.1 bits (55), Expect = 9.4
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
SG + E +E + + E E +EE++++++EV
Sbjct: 440 SGDFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEV 479
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 28.0 bits (63), Expect = 0.77
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
MLP+F + D +E EE +E + EEE++E + E +E + VK+ +
Sbjct: 467 MLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKDVRL 524
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase/S1 RNA-binding domain protein; Reviewed.
Length = 647
Score = 28.0 bits (63), Expect = 0.78
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
++G S+ D +EE + E + EE EE E+ E E E ++ + V
Sbjct: 258 TAGASTPDWIIEEVIKKMSELDNMEEVEENEQLEYMNELEKQIRRGDIV 306
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 28.1 bits (62), Expect = 0.79
Identities = 10/53 (18%), Positives = 27/53 (50%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
D ++ + S+ E E + ++E+++ EE++ E +++++ KE
Sbjct: 87 DVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKER 139
Score = 25.8 bits (56), Expect = 5.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
S+ E E + ++E+++ EE++ E + ++ E E I
Sbjct: 96 SESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERI 140
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 28.1 bits (63), Expect = 0.85
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
+++EE++ E+EE+E +E++ + +++E + KE E + KA +
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIP 592
Score = 26.9 bits (60), Expect = 1.8
Identities = 11/43 (25%), Positives = 32/43 (74%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
D E ++ E+E +E +E++ + +++EE++++E+E +++A++
Sbjct: 549 DKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 25.0 bits (55), Expect = 8.6
Identities = 8/38 (21%), Positives = 23/38 (60%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
EE+E +E++ + +++EE++ + +++ E P +
Sbjct: 558 EEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAE 595
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 28.1 bits (62), Expect = 0.86
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ D+E ++ E EE EEEE + E + E+E+ E EAE
Sbjct: 427 AGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAE 470
Score = 26.2 bits (57), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
DD+ E + E +EE ++ E EE EEE ++E + K +
Sbjct: 415 DDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
Score = 25.4 bits (55), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
DD EE EEEE + E + E+E+ E +E E+
Sbjct: 435 DDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAEL 471
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 27.3 bits (61), Expect = 0.94
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
V EE E E EEE EEEE +++ E++ + L
Sbjct: 13 VRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLP 58
Score = 26.9 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
K + R+ + E E E EEEEE E E+EE+
Sbjct: 10 KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEEL 51
Score = 25.0 bits (55), Expect = 7.0
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E E E EEE EEEEE E E E + E
Sbjct: 16 EEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEEL 55
Score = 24.6 bits (54), Expect = 8.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S + +++ E EE EEEEE E E+E
Sbjct: 7 SRRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDE 49
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 28.0 bits (62), Expect = 0.95
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
F S+ S R +D++ + E EEE + E E E E +
Sbjct: 475 FSSANSLERGADEDYLIVNGTNEPYEEEVIKTNENENFPLENESPCD 521
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking.
Sec14-like Golgi-trafficking domain The GOLD domain is
always found combined with lipid- or
membrane-association domains.
Length = 136
Score = 27.3 bits (61), Expect = 0.95
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
SD V E +EEEEEE EEEE E + E
Sbjct: 44 SDAVSVHVSESSDEEEEEEAEEEEAETGDVE 74
Score = 26.2 bits (58), Expect = 2.3
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ V E +EEEEEE EEEE E +VE
Sbjct: 45 DAVSVHVSESSDEEEEEEAEEEEAETGDVE 74
Score = 25.8 bits (57), Expect = 3.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
E +EEEEEE EEEE E + E +
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 27.7 bits (62), Expect = 0.98
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+EEE V+E++ E EE EEE E EE ++ E +E +
Sbjct: 131 DEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 26.6 bits (59), Expect = 2.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
F K ++E V+E++ EE EEE E EE +++E +E + + +T
Sbjct: 121 FKRPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQA 179
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 27.7 bits (62), Expect = 0.98
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E+E EEEEEE EE EEE EE+ + + K A
Sbjct: 146 ELELPEEEEEEPEEMEEELEEDAADRDARKRAA 178
Score = 26.6 bits (59), Expect = 2.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
++E E EE EE EE+ + + + EE +E+ E+ + ++VI
Sbjct: 151 EEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQVI 194
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 27.9 bits (62), Expect = 0.99
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
S K + S D+ EEE E E+E + EE E++ ++EEEE+ + E + +
Sbjct: 157 KSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDG 209
Score = 26.7 bits (59), Expect = 2.2
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+K S + E ++++E E E E+E + EE E++ ++EEE + E
Sbjct: 154 KTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSE 202
Score = 26.3 bits (58), Expect = 3.2
Identities = 20/87 (22%), Positives = 38/87 (43%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCM 67
+K + S + +E + ++EEE E E+E + EE E++ + E ++++ + D M
Sbjct: 151 AKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGM 210
Query: 68 CRPCTSIEESAVIPQEIVNYADEAPIS 94
+ EE P N S
Sbjct: 211 LVDSSDEEEGEEAPSINYNEDTSESES 237
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function
prediction only].
Length = 128
Score = 27.4 bits (61), Expect = 1.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
E +EE E EE+ +E +EEE E EE + + E++ K +
Sbjct: 18 ELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGIT 65
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 27.6 bits (61), Expect = 1.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
SS S + E E + E E++E+ EE EEE+ EEE K +
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 27.2 bits (60), Expect = 1.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
S S +D E++ E + E E++E+ EE EEE+ E ++ K
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLK 342
Score = 27.2 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
S +S ++ E E+++ E + E E++E+ EE EEE+ E
Sbjct: 288 SDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNE 329
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 27.7 bits (62), Expect = 1.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
G + E + + E E+ EE EEEE +EE E + +EA ++ +
Sbjct: 502 GAAKYPENPDNKTEELLYEKLLIEEAEEEEIDEEAEILDKAQQEATMVAE 551
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 27.4 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
EG+ EE + + EEE ++E E E E E
Sbjct: 239 EGLLEESDDDGEEESDDESAWEGFESEYEP 268
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 27.4 bits (61), Expect = 1.2
Identities = 12/42 (28%), Positives = 29/42 (69%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
K + S+D+E V EEE +++ E ++ ++++E++++EE+
Sbjct: 70 QKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEK 111
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 27.2 bits (61), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E V EE E E E++EE +E E E+E +E + + ++
Sbjct: 9 PQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQ 49
Score = 25.7 bits (57), Expect = 4.0
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S++++ +E+ EE E E E++EE +E E E+E + + AE
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAE 45
Score = 25.3 bits (56), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E+ E E E E++EE +E E E+E +E + E E
Sbjct: 11 EQVSEEIEAEVEQQEEADEAELEDELDEADARIAELE 47
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 27.1 bits (61), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+EE E+E EEE EE+ + + E+E E EV+++
Sbjct: 87 DEEIELELNLTEEELEEKYKGKLEKEYEG----PLYEVVSR 123
Score = 24.8 bits (55), Expect = 8.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
DE +E E + EEE EE+ + + E+E E EV
Sbjct: 85 DKDEEIELELNLTEEELEEKYKGKLEKEYEGPLYEV 120
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 27.0 bits (60), Expect = 1.3
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
D+ ++ E + ++ EE EEEEE+EE+ E E +V +K++
Sbjct: 5 DDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSN 45
Score = 25.8 bits (57), Expect = 3.3
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
E+ +++ + E ++++ EE EEEEE+EE+
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEED 29
Score = 25.8 bits (57), Expect = 4.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
++ + + ++++ EE EEEEE+EE+ E E V
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDV 38
Score = 25.4 bits (56), Expect = 4.7
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
E+ + + E ++++ EE EEEEE+EE+ E ++ ++V + +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSN 45
Score = 25.4 bits (56), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
S D E +++ EE EEEEE+EE+ E E +
Sbjct: 4 SDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 27.2 bits (61), Expect = 1.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
GVE + +E EE + E E+E+ E+ E E + E KA
Sbjct: 260 GVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 26.4 bits (59), Expect = 3.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E +E+E EE + E E+E+ E+ E EE ++ +E
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREE 299
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 26.4 bits (59), Expect = 1.3
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D + + E EEEEE E+ E E+EE+EEE++++
Sbjct: 39 DYDYDSDAEWEEEEEGEDLESEDEEDEEEDDDD 71
Score = 24.5 bits (54), Expect = 5.8
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
D EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
>gnl|CDD|215252 PLN02458, PLN02458, transferase, transferring glycosyl groups.
Length = 346
Score = 27.2 bits (60), Expect = 1.3
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
+ + V E E E+EEEE ++ + ++T
Sbjct: 78 INAQTPVPAPARSAESETASLLEKEEEEPKLAPRRLVIIVT 118
Score = 26.4 bits (58), Expect = 2.4
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
E E E+EEEE ++ VI P
Sbjct: 85 PAPARSAESETASLLEKEEEEPKLAPRRLVIIVTP 119
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 27.1 bits (61), Expect = 1.3
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 16 DDEGVEEEEEVE-----EEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
D+E +EEEEE E +E+E +EEEEEE E+E EA
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 27.5 bits (61), Expect = 1.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E+++ E ++++ E+E ++ E+E E K+AE
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Score = 26.3 bits (58), Expect = 3.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E+E + E+E +E++++ EE ++ K+AE
Sbjct: 98 AEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Score = 25.9 bits (57), Expect = 4.1
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
E+ ++ E+++ EE ++++ E+E ++ E E + E +A
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA 120
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 27.4 bits (62), Expect = 1.4
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
R + E E E E E EEE ++ + E+E+
Sbjct: 298 RKRQEAAEAEAEAAEAEAAAEPEEESWDDVLPVDPLELEL 337
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 27.3 bits (61), Expect = 1.4
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
S + +D G EE +V+ ++E ++ E++ +++
Sbjct: 141 SLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
Score = 25.7 bits (57), Expect = 4.8
Identities = 9/46 (19%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 10 SSGRSSDDEGVEEEEEVEEEE-EEEEEEEEEEEEEEEEEEEVEMVK 54
S + + G E+ ++EE + + ++E ++ E++ +++ +VK
Sbjct: 138 GSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDDAPIVK 183
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 27.4 bits (62), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+EE E EEEE EEE + EEEE++ + ++
Sbjct: 326 LEETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDED 361
Score = 27.0 bits (61), Expect = 1.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 18 EGVEE---------EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+G++E EE E EEEE EEE + EEEE++ + ++ +
Sbjct: 313 QGLDELLYAVAELLEETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDED 361
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 27.2 bits (61), Expect = 1.4
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEE----EEEEEEEEEEEEEEVEMVKE 55
++E E E E E+ E +EE +EEE++ +E +
Sbjct: 20 PKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRR 66
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 26.8 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE---AEVI 59
E EE EEEEEE+++ ++ E+E+ E ++ K +V+
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKVV 152
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 27.2 bits (60), Expect = 1.4
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+EE EE +E++EEEE EEEEE + VK
Sbjct: 328 DEEMLEETQEQQEEEENEEEEENDTVK 354
Score = 26.9 bits (59), Expect = 2.3
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEE 37
D+E +EE +E +EEEE EEEEE
Sbjct: 328 DEEMLEETQEQQEEEENEEEEE 349
Score = 26.1 bits (57), Expect = 4.1
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 30 EEEEEEEEEEEEEEEEEEEEVEM 52
EE +E++EEEE EEEEE + V++
Sbjct: 333 EETQEQQEEEENEEEEENDTVKL 355
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 26.9 bits (60), Expect = 1.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
DE E + +EE++ +EEE + + EE +E E
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKERER 122
Score = 26.5 bits (59), Expect = 2.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
D+ + EE++ +EEE + + EE +E E E +
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 26.6 bits (59), Expect = 1.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+E + EE +EE EE E + E E K+A I K
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILK 40
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 26.9 bits (60), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEE--------EEEEVEMVKEAEVITK 61
EE+ EE+E E+EE+E +EE+E+E EE E + + + K
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 26.1 bits (58), Expect = 3.0
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEE 49
+EE+ EE+E E+EE+E +EE+E+E
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKE 37
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 27.3 bits (60), Expect = 1.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 31 EEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+ E+EE E+EEE + E VEM ++++
Sbjct: 266 QREQEETRTEDEEEPDSEAVEMYLDSDI 293
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 27.1 bits (60), Expect = 1.6
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEES 77
+ ++ ++ ++E+EE E EE + EE EE + + E+ I+ S
Sbjct: 62 KTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLS 121
Score = 26.3 bits (58), Expect = 2.5
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
+ EE E+ EE + EE EE +++ + E AEV + +D
Sbjct: 68 KKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVID 119
Score = 24.8 bits (54), Expect = 10.0
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
K+ + + E V E E + EE EE +++ + E + + +
Sbjct: 66 KTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEV 112
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 27.0 bits (60), Expect = 1.6
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
S DD + ++++ + EEEE+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
Score = 25.5 bits (56), Expect = 6.3
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEE-EEEEEEEEE 47
+ R D + E+ ++++++ + EEEE+
Sbjct: 22 TDSGESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEEEDG 63
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 26.9 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
D E + E +++E +E EEE+ +EEEEE
Sbjct: 207 DGEAMPIENHLQQESSLNDETEEEQPDEEEEE 238
Score = 24.9 bits (55), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEE 49
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 26.9 bits (60), Expect = 1.7
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ D E EE E+ EEEE EEEE EEE E EEE++E E+ + E +
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDK 58
Score = 25.4 bits (56), Expect = 5.2
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
SD E EE + EE EE E+ EEEE EEEE EEE ++ E+
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEI 45
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 26.5 bits (59), Expect = 1.8
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
F K DD+ ++++ +++ +EE+ +EE++E+EE+EE
Sbjct: 86 KFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 26.5 bits (59), Expect = 1.8
Identities = 10/33 (30%), Positives = 26/33 (78%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
D+ + +++ + +++ +EE+ +EE++E+EE+EE
Sbjct: 97 GDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 25.0 bits (55), Expect = 6.8
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
K + D + ++++ +++ +EE+ +EE++E+EE+EE
Sbjct: 89 KKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 24.6 bits (54), Expect = 9.7
Identities = 9/39 (23%), Positives = 25/39 (64%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ +G ++ + + +++ +EE+ +EE++E+EE+ E
Sbjct: 91 KKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 27.0 bits (60), Expect = 1.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 17 DEGVEEEEEVEEE----------EEEEEEEEEEEEEEEEEEEEVEM 52
EG++E E E E ++ ++ EEE E +EEEE E+
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 27.1 bits (60), Expect = 1.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
F + R + EEEEE E+++++ ++E+E+E+ EEV E+ V
Sbjct: 123 QFEDDITRYREDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKE 182
Query: 64 LD 65
D
Sbjct: 183 DD 184
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 27.0 bits (60), Expect = 1.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 29 EEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E + + EEE + E + VKE
Sbjct: 329 ARAAAEAAKVKREEESAQAEAKDSVKE 355
Score = 25.8 bits (57), Expect = 5.0
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
E + + EEE + E ++ E ++ AE+
Sbjct: 329 ARAAAEAAKVKREEESAQAEAKDSVKEQLRTAEI 362
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 27.0 bits (60), Expect = 1.9
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 18 EGVEEEEEVEEEE-----EEEEEEEEEEEEEEEEEEEVEM 52
EG+EE E E E EEE E E++ ++EE+E EM
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 26.8 bits (60), Expect = 2.0
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEE--EEEEEEEEEEEEVEMVK 54
D+ G+ + E+ E EE E E E + +++++ + +
Sbjct: 596 DPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDDAAR 638
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 26.7 bits (59), Expect = 2.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
V E ++ ++ +EE E E+EEEEEE EE
Sbjct: 419 VSEYQQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 26.6 bits (59), Expect = 2.0
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+D+G EE+ E EE E+EE E+ EE E + EE + + + K
Sbjct: 26 EDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENK 71
Score = 26.3 bits (58), Expect = 3.3
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 4 DFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
H + ++E EE++ EE+ E EE E+EE E+ EE EV++ + + K
Sbjct: 8 AKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNK 65
Score = 25.1 bits (55), Expect = 8.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E E EE+E+EE E+ EE E + EE ++E +KE
Sbjct: 27 DKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKE 68
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 26.3 bits (58), Expect = 2.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 34 EEEEEEEEEEEEEEEEVEMVKE 55
++EEE+EEE E +E E++ E
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGE 117
Score = 26.3 bits (58), Expect = 2.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
++EEE+EEE E +EEE E +++K+
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGEIRDLLKQ 124
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 26.7 bits (59), Expect = 2.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
EE +E+ EE EEEE ++ V+ +++
Sbjct: 782 EENDLDEQLLLLPEELEEEETKKPVVLVDTIQDVRSTDV 820
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved
in conjugation with cellular fusion (mating) and
invasive growth. A high throughput localisation study
has localised RXT2 to the nucleus.
Length = 141
Score = 26.2 bits (58), Expect = 2.2
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEE 46
E+ ++++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.2 bits (58), Expect = 2.3
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEE 41
R +D G ++++ ++E++EE + E+++E
Sbjct: 46 RIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.4 bits (56), Expect = 4.2
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEE 47
+E+ ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.4 bits (56), Expect = 4.3
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEE 42
D++G + +++ E++E++EE + E+++E
Sbjct: 45 PRIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 26.8 bits (59), Expect = 2.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEE 40
S +DE +E+EV+ E+E + EE++
Sbjct: 371 SDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 26.5 bits (58), Expect = 2.4
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
EE++ EE+EEEE EEE ++EE + ++
Sbjct: 216 EEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 26.5 bits (58), Expect = 2.8
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + ++ + + +E +E + EE++ +EE+EEEE EEE
Sbjct: 193 KAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEE 232
Score = 25.4 bits (55), Expect = 7.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+E EE++ +EE+EEEE EEE ++EE + +
Sbjct: 211 QEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 25.4 bits (55), Expect = 7.1
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEE 48
+E + EE++ +EE+EEEE EEE ++EE
Sbjct: 211 QEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 25.0 bits (54), Expect = 8.7
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S E ++E + E++ +EE+EEEE EEE ++EE +
Sbjct: 202 LLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members
catalyze various methylation steps in cobalamin
(vitamin B12) biosynthesis, other members like
Diphthine synthase and Ribosomal RNA small subunit
methyltransferase I (RsmI) act on other substrates. The
function of this subfamily is not known.
Length = 255
Score = 26.5 bits (59), Expect = 2.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E E+ E EEE++ + EE V++++EA
Sbjct: 67 NLEAEKSPREAFEEEKKRQREEFVKVIREA 96
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 26.4 bits (59), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E +EE E EE EE+ EE E+ + E K A+ ++
Sbjct: 88 AETLEERREIREEAEEKWEEALEKGDLEEARKYAQRSSR 126
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 26.6 bits (59), Expect = 2.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
D+ V + EE+ EE ++ EE E ++EE+ + +++E
Sbjct: 605 DEFAVVDSEELRRAIEEWKKRFEERERRQKEEDILRIIEE 644
Score = 25.8 bits (57), Expect = 4.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E + + +EEE E+E EEEE E K + + +
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEE 429
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 26.3 bits (58), Expect = 2.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+ + E +EE E E+EEEE+ ++EEEE++
Sbjct: 141 TREQEELEEALEFEKEEEEQRRLLLQKEEEEQQ 173
Score = 25.5 bits (56), Expect = 6.4
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E+EE E E E+EEEE+ ++EEEE +M K
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKR 177
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 26.1 bits (58), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+E ++EEE ++E EE E E E E+E K
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKA 133
Score = 25.7 bits (57), Expect = 3.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
R S E +EEE +E EE E E E E E ++
Sbjct: 98 RQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 26.4 bits (58), Expect = 2.8
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEE 49
E +++E EE+ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.4 bits (58), Expect = 3.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
E + +E EE+ E+E +E + +
Sbjct: 57 PSEAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.4 bits (58), Expect = 3.1
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
R + V E ++++E EE+ E+E +E + +
Sbjct: 49 RVAAPPSVPSEAALQQDEGEEQRVEQELGQESSDSK 84
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation
termination are recognised and rapidly degraded by
eukaryotic cells through a pathway known as
nonsense-mediated mRNA decay. In Saccharomyces
cerevisiae, three trans-acting factors (Upf1 to Upf3)
are required for nonsense-mediated mRNA decay.
Length = 171
Score = 26.2 bits (58), Expect = 2.8
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S S D+G E+EE EE+E++E +EEE + ++E++E
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDE 40
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 25.7 bits (57), Expect = 2.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 32 EEEEEEEEEEEEEEEEEEVEM 52
E ++EE++EEEEEE + +M
Sbjct: 78 AAEAKKEEKKEEEEEESDDDM 98
Score = 24.2 bits (53), Expect = 9.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 27 EEEEEEEEEEEEEEEEEEEE 46
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 24.2 bits (53), Expect = 9.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 28 EEEEEEEEEEEEEEEEEEEE 47
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 24.2 bits (53), Expect = 9.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 29 EEEEEEEEEEEEEEEEEEEE 48
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 24.2 bits (53), Expect = 9.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 30 EEEEEEEEEEEEEEEEEEEE 49
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 26.3 bits (58), Expect = 2.9
Identities = 6/48 (12%), Positives = 25/48 (52%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
S D+ +++ + +++ +++E+ + + + E +E V+++
Sbjct: 109 DTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQ 156
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 25.7 bits (57), Expect = 3.0
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEE 49
EE++EEEEEEEE+EE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 25.7 bits (57), Expect = 3.0
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
EE++EEEEEEEE+EE EEE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 25.7 bits (57), Expect = 3.2
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVE 51
EE++EEEEEEEE+EE EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 25.7 bits (57), Expect = 3.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 25.7 bits (57), Expect = 3.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEM 52
EE++EEEEEEEE+EE EE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAA 98
Score = 25.3 bits (56), Expect = 4.0
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
EE++EEEEEEEE+EE EEE
Sbjct: 69 AAAAAAAAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 26.4 bits (59), Expect = 3.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E+ +EEE EE E+ E +EE E+ ++
Sbjct: 208 EDPGNDEEEAREEVEKLESGDEEAELWRKF 237
Score = 25.7 bits (57), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEE 46
EE+ +EEE EE E+ E +EE E
Sbjct: 207 EEDPGNDEEEAREEVEKLESGDEEAE 232
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 26.5 bits (58), Expect = 3.2
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+D E E VE E E ++ EE+ +
Sbjct: 797 AKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 25.3 bits (55), Expect = 6.8
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEE----EEEEEEEEEEEEVEMVKEA 56
+ ++ + + ++G ++E E E E E ++ EE+ + + VK+
Sbjct: 787 LSTTIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKK 846
Query: 57 E 57
+
Sbjct: 847 K 847
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 25.7 bits (57), Expect = 3.2
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E EEE+ +E EEE E E E E VKE E + K
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKLLK 120
>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated.
Length = 203
Score = 26.0 bits (58), Expect = 3.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEE 46
+V EE E EEE EE
Sbjct: 182 KVLARPEEVEAEEEVAVAAEEA 203
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 26.2 bits (57), Expect = 3.3
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEE 45
RS + +E+ +++ + E E E E
Sbjct: 51 RSCQGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
>gnl|CDD|216289 pfam01080, Presenilin, Presenilin. Mutations in presenilin-1 are a
major cause of early onset Alzheimer's disease. It has
been found that presenilin-1 binds to beta-catenin
in-vivo. This family also contains SPE proteins from
C.elegans.
Length = 403
Score = 26.3 bits (58), Expect = 3.4
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S SS S + EE E+ E + E+ EEEEE
Sbjct: 281 ESDSSETESQSDSSLAPEEDAAEQPEVQSNSLPSNEKREEEEE 323
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97
family. This model family represents the major capsid
protein component of the heads (capsids) of
bacteriophage HK97, phi-105, P27, and related phage.
This model represents one of several analogous families
lacking detectable sequence similarity. The gene
encoding this component is typically located in an
operon encoding the small and large terminase subunits,
the portal protein and the prohead or maturation
protease [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 384
Score = 26.2 bits (58), Expect = 3.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+ E+E++ E EEE+ E + +EE ++ + E++ ++E
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELL 55
Score = 25.8 bits (57), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+DE + E EE + E + +EE ++ + E + EE+
Sbjct: 20 EDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELL 55
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 25.0 bits (55), Expect = 3.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
D G E + E + +E+E E E E EEE
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.0 bits (55), Expect = 3.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEE 42
+G S E +V+E+E E E E EEE
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 24.2 bits (53), Expect = 6.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
S ++ R + E ++E E + +E+E E E E EE
Sbjct: 10 SLAAAARPLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEE 52
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 26.4 bits (58), Expect = 3.4
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 37 EEEEEEEEEEEEEVEMVKEAEVITK 61
E +EE+ E+++ VE+ + T+
Sbjct: 606 VELDEEDTEDDDAVELPSTPSMGTQ 630
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 26.4 bits (58), Expect = 3.4
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 23/79 (29%)
Query: 7 SSKSSGRSSDDEGVEEE--------------EEVEEEE-----EEEEEEEEEEEEEEEEE 47
S SS S D+ EEE EEV E E E+E + +E E + + +E
Sbjct: 461 ESSSSDGSGHDDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQE 520
Query: 48 EEV----EMVKEAEVITKA 62
EE E+ +E V+ KA
Sbjct: 521 EEAAAAKEITEEENVLAKA 539
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 26.0 bits (57), Expect = 3.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 30 EEEEEEEEEEEEEEEEEEEEVEMVKEAEVI 59
E++E E +E E E VK + V+
Sbjct: 180 EQQEAETDEVMETIERNPHHSLSVKSSTVV 209
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 25.8 bits (57), Expect = 3.7
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEE 41
F S+ SS+DE E+EE+ + E ++
Sbjct: 112 FVSAPVPHHSSEDENDEDEEDNADRAGIESGIDDSAP 148
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 26.0 bits (57), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
VEE E+ +E + EEE E+E E+ +EE + K +
Sbjct: 370 VEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVAL 408
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 25.7 bits (57), Expect = 3.7
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
+ + E+EE E E ++ E
Sbjct: 95 NKLRRKLEKEEPEAPAPAPPAEEVLLTE 122
Score = 24.9 bits (55), Expect = 6.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 26 VEEEEEEEEEEEEEEEEEEEEEEEV 50
+ + + E+EE E EEV
Sbjct: 94 INKLRRKLEKEEPEAPAPAPPAEEV 118
Score = 24.9 bits (55), Expect = 6.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEE 44
+ + E+EE E EE
Sbjct: 93 AINKLRRKLEKEEPEAPAPAPPAEEV 118
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 26.0 bits (58), Expect = 3.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
D+E VEE E +E E E +EE+ ++ + +E
Sbjct: 398 DEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAF 440
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 25.8 bits (57), Expect = 4.0
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEE--EEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
S + VE+E EVEEEE E+++++E ++E++E+++++ +MV+ K
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 25.8 bits (56), Expect = 4.0
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
E+ +E E++EE+E E EE+ EE+ ++ E E++++ E T++ D
Sbjct: 149 EKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDD 193
Score = 25.0 bits (54), Expect = 8.5
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+E ++E E+ EE+E E EE+ EE+ ++ E E +E
Sbjct: 148 EEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIE 182
Score = 25.0 bits (54), Expect = 9.0
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+E EE+EE E E EE+ +E E++EE+E E
Sbjct: 133 QEREELEERMEWERREEKIDEREDQEEQERE 163
Score = 24.6 bits (53), Expect = 9.9
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E E EE +E E EE+ +E E++EE+E E E + ++E
Sbjct: 134 EREELEERMEWERREEKIDEREDQEEQEREREEQTIEE 171
>gnl|CDD|234065 TIGR02937, sigma70-ECF, RNA polymerase sigma factor, sigma-70
family. This model encompasses all varieties of the
sigma-70 type sigma factors including the ECF subfamily.
A number of sigma factors have names with a different
number than 70 (i.e. sigma-38), but in fact, all except
for the Sigma-54 family (TIGR02395) are included within
this family. Several PFAM models hit segments of these
sequences including Sigma-70 region 2 (pfam04542) and
Sigma-70, region 4 (pfam04545), but not always above
their respective trusted cutoffs.
Length = 158
Score = 25.8 bits (57), Expect = 4.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+ EE + + EEE E+EEE E ++EA
Sbjct: 74 LRRELDLLEELLDSDPSPEEELEQEEEREALREA 107
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 25.8 bits (57), Expect = 4.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+EE+E+ + E+EE+ E EE+ E+E E +++ +
Sbjct: 64 AKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQ 103
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 25.3 bits (56), Expect = 4.0
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEE--EEEEEEEVEMVKEA 56
D E+EEE E + + E+E+ + E EEEEEE+ +++E
Sbjct: 67 GDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEEG 109
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 26.0 bits (58), Expect = 4.2
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
E EEEEEVEEEE + E + + E + +
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPE 271
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 26.0 bits (58), Expect = 4.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
+ + G+E E E E+EE E+ E E+ EE+E E
Sbjct: 840 KLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 25.7 bits (57), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
+E E +EE E+ E E+ EE+EEE+
Sbjct: 849 LEGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
>gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2. This model
discriminates eubacterial (and mitochondrial)
translation initiation factor 2 (IF-2), encoded by the
infB gene in bacteria, from similar proteins in the
Archaea and Eukaryotes. In the bacteria and in
organelles, the initiator tRNA is charged with
N-formyl-Met instead of Met. This translation factor
acts in delivering the initator tRNA to the ribosome.
It is one of a number of GTP-binding translation
factors recognized by the pfam model GTP_EFTU [Protein
synthesis, Translation factors].
Length = 587
Score = 25.9 bits (57), Expect = 4.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
EE + E EE E EE++E+ +V+ V+T
Sbjct: 55 EEFGVKVEVRVTLEETEAEEQDEDSGDLLVERPPVVT 91
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 25.8 bits (57), Expect = 4.3
Identities = 9/35 (25%), Positives = 10/35 (28%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
V E E E E E EEE +
Sbjct: 120 AAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 25.7 bits (57), Expect = 4.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 34 EEEEEEEEEEEEEEEEVEMVK 54
+ E+EE EEE+ ++V
Sbjct: 161 GKSEKEEPEEEKTPAPDKIVS 181
>gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the
terminal step of translocation in bacteria. Peptide
chain release factor 3 (RF3) is a protein involved in
the termination step of translation in bacteria.
Termination occurs when class I release factors (RF1 or
RF2) recognize the stop codon at the A-site of the
ribosome and activate the release of the nascent
polypeptide. The class II release factor RF3 then
initiates the release of the class I RF from the
ribosome. RF3 binds to the RF/ribosome complex in the
inactive (GDP-bound) state. GDP/GTP exchange occurs,
followed by the release of the class I RF. Subsequent
hydrolysis of GTP to GDP triggers the release of RF3
from the ribosome. RF3 also enhances the efficiency of
class I RFs at less preferred stop codons and at stop
codons in weak contexts.
Length = 268
Score = 25.6 bits (57), Expect = 4.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
EE + ++ + +E E+ E+ EE+E+V+ A
Sbjct: 194 EETKGLDDPKLDELLGEDLAEQLREELELVEGA 226
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 25.9 bits (57), Expect = 4.5
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEESAVIPQE 83
E+ EEE E E E E++EE EE V+ A AP D E A P
Sbjct: 140 EDDEEEALEVLEGEGEDDEEAAAEEYFSRVRPA----LAPDDGHPHLFKWGPEWARKPPR 195
Query: 84 IVNYADEA 91
+++ A
Sbjct: 196 VLSTALVE 203
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 25.4 bits (56), Expect = 4.6
Identities = 6/27 (22%), Positives = 6/27 (22%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEE 48
E E E EEE
Sbjct: 129 AAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 25.8 bits (58), Expect = 4.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
EEE EE+ + + E +EE E V EA
Sbjct: 505 AALLEEETEEQIAKIKAEWQEEHEEVLEA 533
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 25.6 bits (57), Expect = 4.7
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
EE+EE E EE EE+ EE +EE + E K A+ ++
Sbjct: 41 AEEIEERREVREEAEEKYEEAKEEGDLEEARKYAQRSSR 79
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein
is found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 25.8 bits (57), Expect = 4.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
G ++EEE E+E E+E++ +E E +E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 25.4 bits (56), Expect = 5.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVK 54
+++E E+E+E E+E++ +E E +E V K
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNK 47
Score = 25.0 bits (55), Expect = 8.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
++ EEE+E+E E+E++ +E E +E + + I K P
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNP 54
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 25.1 bits (56), Expect = 4.8
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
E +EEEE++E E EEE EE E E E ++E +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 24.7 bits (55), Expect = 8.3
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
EE++E+ E EEE EE E E EEE EE +
Sbjct: 6 EEDDEMRELAEEELEELEAELEEELEELLKLL 37
>gnl|CDD|234338 TIGR03742, PRTRC_F, PRTRC system protein F. A novel genetic system
characterized by seven (usually) major proteins,
including a ParB homolog and a ThiF homolog, is commonly
found on plasmids or in bacterial chromosomal regions
near phage, plasmid, or transposon markers. It is most
common among the beta Proteobacteria. We designate the
system PRTRC, or ParB-Related,ThiF-Related Cassette.
This protein family is designated protein F. It is the
most divergent of the families.
Length = 342
Score = 25.9 bits (57), Expect = 4.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
E +EEE EE +E++E+ E +V++A
Sbjct: 166 ETDEEEALEELCDEDDEDREAYLPSVVEQA 195
>gnl|CDD|235224 PRK04140, PRK04140, hypothetical protein; Provisional.
Length = 317
Score = 25.6 bits (57), Expect = 4.8
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA----EVITKAPLD 65
++ E+ ++E E+ EE+ E+E + ++ KAP D
Sbjct: 187 DILEKVRDDEVTPEDPEEDPFEKEILNVLTRLGFDVLPTKKAPFD 231
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 25.8 bits (57), Expect = 4.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVIT 60
EE + EE E +EE E+ E+ EE+E + +
Sbjct: 112 EELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDL 149
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 25.5 bits (56), Expect = 4.9
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
V EE EEEE EE EE EE E
Sbjct: 156 AAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 25.5 bits (56), Expect = 5.1
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
E V E++ E EE EEEE EE E E
Sbjct: 145 EAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEES 184
Score = 25.5 bits (56), Expect = 5.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
EE EEEE EE EE EE E
Sbjct: 155 AAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4. All proteins in this
family for which functions are known are involved in
targeting nucleotide excision repair to specific regions
of the genome.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 713
Score = 25.6 bits (56), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEE 47
EE E E EE E+ +EE+E+E+
Sbjct: 661 EEFREAIETAWEEIEQIQEEKEQEKHR 687
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus.
This family represents the C-terminus (approximately
500 residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have
been proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 25.6 bits (56), Expect = 5.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEE----EEEVEMVKEAEV 58
D G++E+ +E E+ ++EE E +EE E+++ + E +V
Sbjct: 46 DLGLDEDGYLEGEDGLLDDEEGPEGGDEEGGWDVEDDLVLPPELDV 91
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 25.8 bits (57), Expect = 5.0
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEE-----VEEEEEEE---------EEEEEEEEEEEEEEE 48
D + R +D E + V+E+ E + E E E+E +
Sbjct: 210 ADLSMTPLEARRADAEDSRDTVLLGPDFVDEDIRAEMASIDDESFSSLSDSESESEDEID 269
Query: 49 EVEM 52
E E+
Sbjct: 270 EAEV 273
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 25.6 bits (56), Expect = 5.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 10 SSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
R D +E EE E + ++E+E E+ E+ E + E + E
Sbjct: 235 LEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYITSE 280
Score = 25.2 bits (55), Expect = 6.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ E + E+E EE E + ++E+E E+ E K IT
Sbjct: 234 NLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYITSE 280
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 25.7 bits (57), Expect = 5.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
+++E+E+E+ +EE E E E E E M +
Sbjct: 549 NLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587
Score = 25.7 bits (57), Expect = 5.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEE 47
EE+ EV EE +E++EE E E EEE
Sbjct: 365 EEQNEVVEEADEQQEENEARAEAAEEE 391
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 25.8 bits (56), Expect = 5.1
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 21 EEEEEVEEEEEEEEEEEEEEE-EEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEESAV 79
+E+ +EE+E +E+ E+ + E+ E++ +E+ EV T+ P + + V
Sbjct: 98 KEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNPQPQV 157
Query: 80 IPQ 82
PQ
Sbjct: 158 QPQ 160
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 25.7 bits (56), Expect = 5.1
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
P +H EG + E EE +EE+ E E+ EE V+ V
Sbjct: 339 PGWHEPLFEVGPETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSN 391
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 25.0 bits (55), Expect = 5.2
Identities = 19/26 (73%), Positives = 19/26 (73%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEM 52
EEEEEEEEEEEEEEEE EE M
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEAM 97
Score = 24.6 bits (54), Expect = 6.8
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEE 46
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 24.6 bits (54), Expect = 7.3
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
EEEEEEEEEEEEEEEE EEE +
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMA 98
Score = 24.2 bits (53), Expect = 9.8
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEE 44
E EEEEEEEEEEEEEE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 25.5 bits (56), Expect = 5.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+E+ EEE++ E ++++ EE E E ++
Sbjct: 73 KEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Score = 25.5 bits (56), Expect = 5.8
Identities = 9/36 (25%), Positives = 24/36 (66%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
++E++ EEE++ E ++++ EE E + + E +++
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Score = 25.1 bits (55), Expect = 7.7
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
++E+ EEE++ E ++++ EE E + + E E +
Sbjct: 71 KDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASA 112
Score = 25.1 bits (55), Expect = 8.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 9 KSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
K S + ++ EEE++ E ++++ EE E + + EE + E
Sbjct: 66 KKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 25.4 bits (56), Expect = 5.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+E+ E EEE+ +EEE E + E+ + ++A+ + K
Sbjct: 119 LEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
>gnl|CDD|218562 pfam05342, Peptidase_M26_N, M26 IgA1-specific
Metallo-endopeptidase N-terminal region. These
peptidases, which cleave mammalian IgA, are found in
Gram-positive bacteria. Often found associated with
pfam00746, they may be attached to the cell wall.
Length = 252
Score = 25.3 bits (56), Expect = 5.3
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEM--VKEAEVITK 61
V + E E E EE+ + + ++VE+ + + E+
Sbjct: 14 TMVYDRGEGSETETLEEKPVQLDLKKVELKNISDVELYKV 53
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 25.8 bits (56), Expect = 5.5
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
+S ++ +S ++ VE E + EEE ++EEEE+E+ EE+E V+E EV+ + D
Sbjct: 75 ASIANDKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDD 133
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 25.6 bits (56), Expect = 5.8
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
S E E++ + EEE E ++++EE+ +E+E ++ KEA+ +A
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQA 49
>gnl|CDD|215104 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase;
Provisional.
Length = 891
Score = 25.6 bits (56), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEV 50
G S DE E + E+E+E+EE + E +E +V
Sbjct: 360 GYVSKDESFGTSETRADLLEDEDEDEEVVVDGEVDEGDV 398
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of
the eukaryotic cytosol and of the Archaea are more
similar to glutaminyl-tRNA synthetases than to
bacterial glutamyl-tRNA synthetases. This model models
just the eukaryotic cytosolic and archaeal forms of the
enzyme. In some eukaryotes, the glutamyl-tRNA
synthetase is part of a longer, multifunctional
aminoacyl-tRNA ligase. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases, including all known archaeal enzymes (as
of 2010) may act on both tRNA(gln) and tRNA(glu)
[Protein synthesis, tRNA aminoacylation].
Length = 556
Score = 25.6 bits (56), Expect = 5.9
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
EE +E + + +++E++ + E+ K EV+ +
Sbjct: 59 PEEQKELMKRLGLDIKKKEKKRKGLRELPGAKMGEVVMRFA 99
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 25.4 bits (56), Expect = 5.9
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
EG EE E+E+ + EEE+E+++E++++ E M+++ K
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKE 363
Score = 25.4 bits (56), Expect = 6.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E + EE + E EE E E EEE +EE + + +
Sbjct: 383 EARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGR 422
Score = 25.4 bits (56), Expect = 6.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
++EE + E EE E E EEE +EEE E K
Sbjct: 385 RKKEENDAEIEELRRELEGEEESDEEENEEPSKKN 419
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 25.3 bits (56), Expect = 6.0
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEM 52
EEE + +E E+ E+ +++ +++ E
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 25.3 bits (56), Expect = 6.3
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E + +E E+ E+ +++ +++EEE +
Sbjct: 35 ERQASADESSEDASEDGSDDDSDDDEEEPIY 65
Score = 24.9 bits (55), Expect = 7.0
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
+E + + E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 24.9 bits (55), Expect = 9.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMV 53
EEE +E E+ E+ +++ +++E E +
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPI 64
>gnl|CDD|234877 PRK00964, PRK00964, tetrahydromethanopterin S-methyltransferase
subunit A; Provisional.
Length = 225
Score = 25.4 bits (56), Expect = 6.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+K G ++ V E EE+ EEEEEE + + EE E + ++
Sbjct: 151 CIAKDPGAFDEEPMVVELEEIGGEEEEEEGGPKADPAEEAVEARIRAIERK 201
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 24.5 bits (54), Expect = 6.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 30 EEEEEEEEEEEEEEEEEEEEVEM 52
EEE++EEEEEEEE+ +M
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDDM 83
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 25.6 bits (56), Expect = 6.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
DDE V++ + E EE E + EE E +
Sbjct: 182 YVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERK 219
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 25.4 bits (55), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEE 38
S +S +SS G EE+ + + EEEE E+E+
Sbjct: 140 SITSSQSSASSGFVEEKSLSDVEEEEAEQED 170
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 25.2 bits (55), Expect = 7.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
G+ S E +E+ E EEE E + E + EEEE +
Sbjct: 270 GKYSIQEYLEDRERYEEELAERQATEADFCEEEEAK 305
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 25.0 bits (55), Expect = 7.1
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
SK D+ +++++ E+++E+E E++ E+ + E + + E +
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
Score = 24.7 bits (54), Expect = 9.6
Identities = 4/45 (8%), Positives = 29/45 (64%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDC 66
+++ ++++++++++++++ E+++E+E + +++ L
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 25.0 bits (55), Expect = 7.1
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
R + + EE EE E+++EEEE +E EE+ +E+EE E +K + V+ +
Sbjct: 38 REGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEE 86
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 25.3 bits (56), Expect = 7.3
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 23/69 (33%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEE------------------EEEEEEEEEEEEEEEE 47
HS+ S D +EEVEE ++ EEE E E E + E +
Sbjct: 266 HST-----SDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320
Query: 48 EEVEMVKEA 56
E VE + +
Sbjct: 321 EAVEFAEAS 329
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 25.3 bits (55), Expect = 7.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA---EVITKAPLDCMCRPCTSI 74
+ V E+ + E +E + E EE +E E + E+I A L + + TS+
Sbjct: 404 LQRVNEKTQSLRERNQELQAEVEERQEAEAHLKKTQGELIQAAKLAVVGQTMTSL 458
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 25.2 bits (55), Expect = 7.4
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 5 FHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
S + +D+ E +V E E +E E+ +E EE+ + + E E
Sbjct: 671 ELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEE 723
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 24.9 bits (55), Expect = 7.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 25 EVEEEEEEEEEEEEEEEEEEEEEEE 49
E EE EEEE E EEE +
Sbjct: 274 EPPAEEIEEEEPEVLPEEELNTMKP 298
Score = 24.9 bits (55), Expect = 7.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 27 EEEEEEEEEEEEEEEEEEEEEEE 49
EE EEEE E EEE +
Sbjct: 277 AEEIEEEEPEVLPEEELNTMKPS 299
Score = 24.9 bits (55), Expect = 8.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 28 EEEEEEEEEEEEEEEEEEEEEEVE 51
E EE EEEE E EEE ++
Sbjct: 274 EPPAEEIEEEEPEVLPEEELNTMK 297
Score = 24.9 bits (55), Expect = 8.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
+ V + E EE EEEE E EEE
Sbjct: 265 KTVNWLQYFEPPAEEIEEEEPEVLPEEELNT 295
Score = 24.9 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEE 48
E EE EEEE E EEE +
Sbjct: 274 EPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 25.1 bits (56), Expect = 7.7
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 23/64 (35%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEE------------------EEEEEEEEEEEEEEEE 47
HS+ S D +EEVEE ++ EEE E E + E E
Sbjct: 233 HST-----SDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVE 287
Query: 48 EEVE 51
E VE
Sbjct: 288 EAVE 291
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor
Elf1; Provisional.
Length = 99
Score = 24.6 bits (54), Expect = 7.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEE 47
E ++E +E + EE EEE E E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 25.3 bits (55), Expect = 7.8
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1 MLPDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEE 39
M D K G S +D+ E + +V+EE++ + E+
Sbjct: 1 MATDMQ--KLIGTSEEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 25.3 bits (55), Expect = 7.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
EE +EEE + + +EE++ + E+ + + V
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREKHIPVTGMVSV 47
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 25.0 bits (54), Expect = 7.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 12 GRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
D E +EE E E +EE + + +E EE+EE+ E
Sbjct: 289 VSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDE 328
Score = 25.0 bits (54), Expect = 8.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
S+ +E E EE + + +E EE+EE++E EE E
Sbjct: 290 SEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENE 333
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 24.9 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
E+EE E + E+E E+ ++EEE E
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREA 109
>gnl|CDD|153040 pfam12606, RELT, Tumour necrosis factor receptor superfamily
member 19. This family of proteins is found in
bacteria and eukaryotes. Proteins in this family are
typically between 49 and 288 amino acids in length.
There are two completely conserved residues (K and Y)
that may be functionally important. The members of
tumor necrosis factor receptor (TNFR) superfamily have
been designated as the "guardians of the immune system"
due to their roles in immune cell proliferation,
differentiation, activation, and death (apoptosis). The
messenger RNA of RELT is especially abundant in
hematologic tissues such as spleen, lymph node, and
peripheral blood leukocytes as well as in leukemias and
lymphomas. RELT is able to activate the NF-kappaB
pathway and selectively binds tumor necrosis factor
receptor-associated factor 1.
Length = 50
Score = 23.7 bits (52), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 25 EVEEEEEEEEEEEEEEEEE 43
V+ E+E EE++EEE+EE
Sbjct: 32 TVDPLEDEPEEKKEEEKEE 50
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 25.1 bits (54), Expect = 8.3
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 13 RSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
+ +++ EE+E + E ++E EE ++ EE +++E E K+AE + KA
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 25.0 bits (54), Expect = 8.3
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E+ E+E +E+EE+ ++ +E+ EE +VE VKE
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKE 240
>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7. RPN7 (known as the
non ATPase regulatory subunit 6 in higher eukaryotes)
is one of the lid subunits of the 26S proteasome and
has been shown in Saccharomyces cerevisiae to be
required for structural integrity. The 26S proteasome
is is involved in the ATP-dependent degradation of
ubiquitinated proteins.
Length = 174
Score = 24.8 bits (55), Expect = 8.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
D+ VEE + EEE EE + E ++ +E +EE+
Sbjct: 1 DEAWVEELRKKNEEELEELDAELKDAKENLGKEEIRRALLD 41
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 25.0 bits (55), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
GV EEE++E E+E +E EE ++ E + E
Sbjct: 267 SRGVVSEEELKEIEKEVRKEIEEAVKKAESDPEPN 301
>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction
only].
Length = 346
Score = 25.0 bits (55), Expect = 8.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLD 65
+EE++EE E EE EE + + + K E + K L+
Sbjct: 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE 337
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 24.9 bits (55), Expect = 9.4
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMC 68
G E++ + ++E E ++ EE + ++ + K +
Sbjct: 487 TGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 25.0 bits (55), Expect = 9.5
Identities = 11/41 (26%), Positives = 28/41 (68%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
E+ + + +E EEE+ ++E+ ++E+EE+ +++ E E+ +
Sbjct: 556 PEDVKALDADELEEEDADDEDPDDEDEEQRDILGEMEIAAR 596
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds including sugars, ions, peptides,
and more complex organic molecules. The nucleotide
binding domain shows the highest similarity between all
members of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 276
Score = 24.9 bits (55), Expect = 9.7
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 12 GRSSDD--EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKA 62
GR+S D E+ VE + +EEE + E E+ + + I++
Sbjct: 47 GRASADLIRSGAEKAVVEGVFDISDEEEAKALLLELGIEDDDDLIIRREISRK 99
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 24.8 bits (54), Expect = 9.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
EEE ++E EE E+E+++ + E E +EE E ++ E
Sbjct: 78 EEERLLDELEELEKEDDDLDGELVELQEEKEQLENEE 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.295 0.120 0.313
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,470,155
Number of extensions: 518617
Number of successful extensions: 20676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9994
Number of HSP's successfully gapped: 4123
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 53 (24.0 bits)