RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13267
(101 letters)
>d1fc6a4 c.14.1.2 (A:78-156,A:249-463) Photosystem II D1 C-terminal
processing protease {Algae (Scenedesmus obliquus)
[TaxId: 3088]}
Length = 294
Score = 27.0 bits (59), Expect = 0.34
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 11 SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEE 47
+G + GV + +++ E + E +
Sbjct: 254 AGVDINKIGVSPDVQLDPEVLPTDLEGVCRVLGSDAA 290
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 27.2 bits (59), Expect = 0.36
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEE 42
++ V +VE E++ E+ E
Sbjct: 294 EENGRVISVWKVEAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 0.83
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
EE V + E E++ E+ E
Sbjct: 293 EEENGRVISVWKVEAEDKTEKLAAALEHH 321
Score = 24.5 bits (52), Expect = 3.0
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 34 EEEEEEEEEEEEEEEE 49
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 26.3 bits (58), Expect = 0.48
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
SD+E + ++ ++ EE+E ++ E EEE +E +
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQAN 48
Score = 22.9 bits (49), Expect = 7.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 16 DDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
D + ++ EE E ++ E EEE +E E + IT
Sbjct: 9 DGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT 54
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.1 bits (57), Expect = 0.76
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 18 EGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCM 67
+ E+ +E E E E +EEE+ + ++ + I L +
Sbjct: 75 QPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTAL 124
Score = 25.4 bits (55), Expect = 1.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
E + + +E+ E E E +EEE+ + + EE +
Sbjct: 78 PEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112
Score = 25.4 bits (55), Expect = 1.7
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
G E+ + + + +E E E E +EEE E K
Sbjct: 72 GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 24.6 bits (53), Expect = 3.0
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+ + E + +E E E E +EEE+ + E E + P
Sbjct: 74 EQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIP 117
Score = 23.8 bits (51), Expect = 4.9
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDC 66
+E+ + E+ + +E E E E +EE + ++E +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPS 118
Score = 23.8 bits (51), Expect = 5.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
S E + E+ + +E E E E +EEE+ + + +E
Sbjct: 71 SGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112
Score = 23.4 bits (50), Expect = 6.2
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAP 63
+ +E+ + E+ + +E E E E + E + + +
Sbjct: 70 ISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQV 113
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.8 bits (56), Expect = 0.84
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEE 44
+++EVE+ ++ EEEE + E E+
Sbjct: 228 KQKEVEQLIKKHEEEEAKAEREK 250
Score = 25.0 bits (54), Expect = 1.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + G ++++E E+ ++ EEEE + E E+
Sbjct: 216 TRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 25.8 bits (56), Expect = 0.87
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMC 68
+E +E E EE E E E E+ E+E++ + + + +P
Sbjct: 40 NRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDK 87
Score = 25.1 bits (54), Expect = 1.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
PD + + +EE E + +E +E E EE E E E+E ++
Sbjct: 15 PDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEK 67
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 24.5 bits (53), Expect = 2.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEA 56
+E+E + E +EEEEE + +E+ + V E
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDVLFRVTER 76
Score = 23.4 bits (50), Expect = 5.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 19 GVEEEEEVEEEEEEEEEEEEEEEEEEEE 46
G +E E + E +EEEEE + +E+
Sbjct: 42 GGQELEGAQALGPEVQEEEEEPQGDEDV 69
Score = 22.6 bits (48), Expect = 9.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEE 43
+ +E + + E +EEEEE + +E+
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDV 69
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 24.6 bits (52), Expect = 3.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
S E ++ V +E+ + ++EE EE ++E
Sbjct: 331 SSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 24.4 bits (52), Expect = 3.1
Identities = 5/49 (10%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 22 EEEEVEEEEEEEEEEEEEEE-----EEEEEEEEVEMVKEAEVITKAPLD 65
++++ + E ++ + E+V V + + +A +
Sbjct: 153 TDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVV 201
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA
{Deinococcus radiodurans [TaxId: 1299]}
Length = 201
Score = 24.4 bits (52), Expect = 3.1
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 37 EEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEESAVIPQEIVNYADEA 91
+E E EV ++K E + +D +IE +P+ + A
Sbjct: 21 QEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWA 75
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 24.5 bits (52), Expect = 3.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 21 EEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ EE+ E++ E E +E+ +
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNM 31
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 24.1 bits (51), Expect = 4.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 24 EEVEEEEEEEEEEEEEEEEEEEEEEEV 50
EE +E+ E ++ E + + E EEV
Sbjct: 288 EETKEKMHEVMKKNENKYAQIEHPEEV 314
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 23.8 bits (51), Expect = 4.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEE 45
EE+E+ E E+E+EE E++++
Sbjct: 220 NPEEIEKYVAEIEKEKEENEKKKQ 243
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 23.2 bits (50), Expect = 5.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 15 SDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEE 49
+ + G + + EE+ + +E E EEE +E+E
Sbjct: 61 NTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 23.2 bits (50), Expect = 5.3
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 23 EEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+V EE+ + + +++ E E+E++E +K+ E + +
Sbjct: 81 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMR 119
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 23.2 bits (50), Expect = 5.4
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 37 EEEEEEEEEEEEEVEMVKE 55
++ E E+ + +V ++ E
Sbjct: 89 RKKGEVEQPGDTQVVLLTE 107
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 23.3 bits (49), Expect = 6.8
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEE 76
D EE+ E +E+ +++E+E+EE A+ + +
Sbjct: 55 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 114
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 23.3 bits (49), Expect = 8.7
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 17 DEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVE 51
G EEE + E E ++E E+ +
Sbjct: 344 KIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLA 378
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.295 0.120 0.313
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,695
Number of extensions: 20097
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 217
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 47 (22.3 bits)