BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13271
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGD---STCGQRALYQIGMTGIPVF 62
+D D +LA EA +KA+ DAGI + GD T ++G +
Sbjct: 47 DDQDTSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASM 106
Query: 63 NVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKMEK 99
+ CS +++ AKQ+++SG L +G +K+ K
Sbjct: 107 DQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSK 144
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 16 EALIKALDDAGISINQ-----VQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCST 70
EA +A++ AGI +Q V + + + C +++ +G+ G P F+V C+
Sbjct: 57 EAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSM--LGIKGCPAFDVAAACAG 114
Query: 71 GSSALMLAKQFIESGS 86
+ AL +A Q+++SG+
Sbjct: 115 FTYALSVADQYVKSGA 130
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 16 EALIKALDDAGISINQ-----VQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCST 70
EA +A++ AGI +Q V + + + C ++ +G+ G P F+V C+
Sbjct: 57 EAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQS--XLGIKGCPAFDVAAACAG 114
Query: 71 GSSALMLAKQFIESGS 86
+ AL +A Q+++SG+
Sbjct: 115 FTYALSVADQYVKSGA 130
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 12 ELAKEALIKALDDAGISINQVQQACCGYVY--GDSTCGQR-ALYQIGM-TGIPVFNVNNN 67
+L A+ A++ AGI +V++A G V G+ R A+ G+ P +N
Sbjct: 34 KLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKV 93
Query: 68 CSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
C++G A+M+A Q + G D +A G E M
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMESM 124
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 16 EALIKALDDAGISINQ-----VQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCST 70
EA +A++ AGI +Q V + + + C +++ +G+ G P F+V +
Sbjct: 80 EAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSM--LGIKGCPAFDVAAAXAG 137
Query: 71 GSSALMLAKQFIESGS 86
+ AL +A Q+++SG+
Sbjct: 138 FTYALSVADQYVKSGA 153
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 10 YPELAKEALIKAL-DDAGISINQVQQACCGYVYGD-----STCGQRALYQIGMTGIPVFN 63
YP+ ++KAL + I+ +V G V G S C A Y +PV
Sbjct: 57 YPDDILAPVLKALIEKTNINPAEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRT 116
Query: 64 VNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
VN CS+G A+ I++G D + G E M
Sbjct: 117 VNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 151
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRA-----LYQIGMTGIP 60
+DT EL + L D + Q+ C G V A L I T +P
Sbjct: 51 KDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPET-VP 109
Query: 61 VFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKMEKGSLGAKSKP 108
+ VN CS+G A+ I +GS D +A G E M SL + P
Sbjct: 110 LSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESM---SLADRGNP 155
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 16 EALIKALDDAGISINQ-----VQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCST 70
EA +A++ AGI +Q V + + + C +++ +G+ G P F+V +
Sbjct: 57 EAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSM--LGIKGCPAFDVAAAXAG 114
Query: 71 GSSALMLAKQFIESGS 86
+ AL +A Q+++SG+
Sbjct: 115 FTYALSVADQYVKSGA 130
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 16 EALIKALDDAGISINQ-----VQQACCGYVYGDSTCGQRALYQIGMTGIPVFNVNNNCST 70
EA +A++ AGI +Q V + + + C ++ +G+ G P F+V +
Sbjct: 57 EAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQS--XLGIKGCPAFDVAAAXAG 114
Query: 71 GSSALMLAKQFIESGS 86
+ AL +A Q+++SG+
Sbjct: 115 FTYALSVADQYVKSGA 130
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 2 QKPKEDTDYPELAKEALIKALDDAGIS---INQVQQACCGYVYGDSTCGQRALYQIGMTG 58
Q+ + P +A A +AL+ AG+ ++ V + + + + ++IG T
Sbjct: 54 QRATAEETVPVMAVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGATP 113
Query: 59 IPVFNVNNNCSTGSSALMLAKQFIESGS-DCTLALGFEKM 97
P ++V+ C+ + A + SG+ L +G E++
Sbjct: 114 APAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERL 153
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 53 QIGMTGIPVFNVNNNCSTGSSALMLAKQFIESG-SDCTLALGFEKM 97
Q+ G+ F+++ CS AL +A FI+SG + L +G EK+
Sbjct: 96 QLKAKGVYAFDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKL 141
>pdb|4EHX|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 1.9
Angstrom Resolution
pdb|4EHY|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus In Complex
With AdpMG2+ AT 2.2 ANGSTROM RESOLUTION
Length = 315
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 39 YVYGDSTCGQRALYQIGMTGI-----PVFNVNNNCSTGS---SALMLAKQFIESGSDCTL 90
Y+Y + LY G I PV +V N GS S +M ++ C L
Sbjct: 11 YLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCIL 70
Query: 91 ALGFEKMEKGSL 102
+ G+++ KG+L
Sbjct: 71 SRGYKRKSKGTL 82
>pdb|4EHW|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 2.3
Angstrom Resolution
Length = 317
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 39 YVYGDSTCGQRALYQIGMTGI-----PVFNVNNNCSTGS---SALMLAKQFIESGSDCTL 90
Y+Y + LY G I PV +V N GS S +M ++ C L
Sbjct: 13 YLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCIL 72
Query: 91 ALGFEKMEKGSL 102
+ G+++ KG+L
Sbjct: 73 SRGYKRKSKGTL 84
>pdb|4FD5|A Chain A, Crystal Structure Of Arylalkylamine N-Acetyltransferase 2
From Aedes Aegypti
pdb|4FD6|A Chain A, Crystal Structure Of Native Arylalkylamine
N-Acetyltransferase 2 From The Yellow Fever Mosquito,
Aedes Aegypti
Length = 222
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 77 LAKQFIESGSDCTLALGFEKMEKGSLGAKSKPV 109
LAK+ IE + L GF+ M+ + GA S+ V
Sbjct: 147 LAKKLIEKSEELALDRGFQVMKTDATGAFSQRV 179
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 6 EDTDYPELAKEALIKALDDAGISINQVQQACCGYVYGDSTCGQRALYQIGMTGIP----V 61
+D + A +A KAL DAGI I ++ V D A G G+
Sbjct: 57 QDVQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVT 116
Query: 62 FNVNNNCSTGSSALMLAKQFIESG 85
F+V N C + + +A + +E G
Sbjct: 117 FDVANACLAFINGMDIAARMLERG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,132,816
Number of Sequences: 62578
Number of extensions: 105599
Number of successful extensions: 260
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 19
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)